Query psy10996
Match_columns 192
No_of_seqs 179 out of 1160
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 15:32:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10996.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10996hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u5m_A Cartilage, alpha 1 type 99.6 8.2E-15 2.8E-19 96.9 6.8 63 122-184 7-71 (73)
2 1u5m_A Cartilage, alpha 1 type 99.3 4.7E-12 1.6E-16 83.6 6.1 52 2-53 14-66 (73)
3 3bk3_C Crossveinless 2, bone m 99.1 9.5E-11 3.3E-15 75.7 4.1 57 123-180 8-67 (67)
4 3bk3_C Crossveinless 2, bone m 98.8 4.7E-09 1.6E-13 67.7 4.7 41 12-52 23-65 (67)
5 2xtt_A Protease inhibitor SGPI 96.2 0.0062 2.1E-07 33.9 3.7 30 5-35 4-34 (36)
6 2xtt_A Protease inhibitor SGPI 96.1 0.0063 2.1E-07 33.9 3.3 28 133-161 5-33 (36)
7 1gl0_I Protease inhibitor LCMI 95.8 0.015 5.2E-07 31.9 3.9 30 5-35 4-34 (35)
8 1gl0_I Protease inhibitor LCMI 94.9 0.028 9.7E-07 30.8 3.2 27 133-160 5-32 (35)
9 1xhh_A Beta-microseminoprotein 94.6 0.029 1E-06 37.7 3.4 35 123-157 13-48 (91)
10 1wo9_A HI-1, trypsin inhibitor 94.5 0.028 9.5E-07 31.0 2.6 27 133-160 5-32 (35)
11 3ix0_A Beta-microseminoprotein 93.6 0.051 1.7E-06 36.9 3.0 37 121-157 14-51 (94)
12 1wo9_A HI-1, trypsin inhibitor 93.5 0.07 2.4E-06 29.4 2.9 30 5-35 4-34 (35)
13 3tvj_I Protease inhibitor SGPI 90.4 0.25 8.6E-06 27.5 2.8 28 133-161 8-37 (38)
14 3tvj_I Protease inhibitor SGPI 89.8 0.35 1.2E-05 26.9 3.1 31 4-35 6-38 (38)
15 3ix0_A Beta-microseminoprotein 87.6 0.6 2.1E-05 31.5 3.8 30 2-31 23-52 (94)
16 1xhh_A Beta-microseminoprotein 87.1 0.58 2E-05 31.4 3.4 30 2-31 20-49 (91)
17 3ejh_A Fibronectin; fibronecti 74.9 2.4 8E-05 28.4 2.9 35 124-158 2-43 (93)
18 2cg7_A Fibronectin; signaling 72.1 3.8 0.00013 27.2 3.4 36 122-157 46-89 (90)
19 2ec3_A Fibronectin; complement 69.9 3.7 0.00013 25.7 2.7 37 122-158 17-60 (68)
20 1o9a_A Fibronectin; cell adhes 67.9 3.2 0.00011 27.8 2.3 35 123-157 3-42 (93)
21 2rl0_A Fibronectin; 4F15F1, be 63.7 6.5 0.00022 26.0 3.2 35 123-157 46-89 (89)
22 2j5h_A Teratocarcinoma-derived 61.2 3.6 0.00012 23.1 1.3 24 137-160 12-35 (41)
23 1bx7_A Hirustasin; anti-coagul 35.9 37 0.0013 20.1 3.0 31 147-177 16-46 (55)
24 1skz_A Antistasin; factor XA i 23.1 23 0.00079 24.7 0.6 24 156-179 29-52 (119)
No 1
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2
Probab=99.55 E-value=8.2e-15 Score=96.95 Aligned_cols=63 Identities=27% Similarity=0.828 Sum_probs=58.2
Q ss_pred CcceeeCCEEecCCCeeccCCcceeEECCCCceeecccc-CC-CCCCCccCCCCCcccccCCccC
Q psy10996 122 PSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRIC-SV-TCSNPMTIPNQCCPLCLGECTN 184 (192)
Q Consensus 122 ~~~C~~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~C-~~-~C~~~~~~~g~CCp~C~~~~~~ 184 (192)
..+|+|+|++|.+|++|++++|++|+|.+|.+.|..+.| ++ .|++++.++|+|||+|.+....
T Consensus 7 ~~~C~~~G~~y~~ge~W~~d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p~~~~GeCCPvC~~~~~~ 71 (73)
T 1u5m_A 7 AGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPADLAA 71 (73)
T ss_dssp CSCEESSSCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCCCSSCSCCSCCSSSSC
T ss_pred CCCeeECCEEEcCCCEECCcCcCceECCCCcEEeccccCCCccCCCCCcccCCCcCCCCCCcccC
Confidence 468999999999999999999999999999999999999 66 9999999999999999876543
No 2
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2
Probab=99.29 E-value=4.7e-12 Score=83.59 Aligned_cols=52 Identities=23% Similarity=0.808 Sum_probs=45.5
Q ss_pred CceecCCCEEecCCCeeeEECCCceEEeeecCCCC-CCCCccccCCCcccCCC
Q psy10996 2 NESCENGTSWLSADCEECKCERGIKFCSKVECPKL-PEACTKSEIGQCCPVCL 53 (192)
Q Consensus 2 G~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~Cp~~-~C~~~~~~~g~CCp~C~ 53 (192)
|+.|++|++|++++|++|+|.+|.+.|..+.|+.+ .|+.+...+|+|||+|+
T Consensus 14 G~~y~~ge~W~~d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p~~~~GeCCPvC~ 66 (73)
T 1u5m_A 14 GQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICP 66 (73)
T ss_dssp SCEECSSCEECSCSSEEEEEETTEEEEEECCCSCCSSCSCCCCCSSCSCCSCC
T ss_pred CEEEcCCCEECCcCcCceECCCCcEEeccccCCCccCCCCCcccCCCcCCCCC
Confidence 78999999999989999999999999999999877 78777777777777763
No 3
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}
Probab=99.07 E-value=9.5e-11 Score=75.75 Aligned_cols=57 Identities=25% Similarity=0.674 Sum_probs=51.0
Q ss_pred cceeeCCEEecCCCeeccCCcceeEECCCCceeecccc-CCC--CCCCccCCCCCcccccC
Q psy10996 123 SGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRIC-SVT--CSNPMTIPNQCCPLCLG 180 (192)
Q Consensus 123 ~~C~~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~~~C-~~~--C~~~~~~~g~CCp~C~~ 180 (192)
..|.++|++|.++. |..++|+.|+|++|.+.|.++.| ++. |..++..+|+|||+|.+
T Consensus 8 ~~C~~eGe~~~~~~-~~~~~C~~C~C~~G~v~C~~~~CP~l~~~C~~~~~~~g~CCp~C~~ 67 (67)
T 3bk3_C 8 ASCENEGEVLHIPN-ITDNPCISCVCLNQKAECKQEKCAPLAEDCALVVKQTGACCEKCKG 67 (67)
T ss_dssp CBCSSTTCEECCTT-TTTSTTEEEEECSSBEEEEECCCCCCCTTCCCEECCTTCSSCEECC
T ss_pred CceEECCEEEeCCC-ccCCCcceeEecCCceEEccccCCCCccccCCcccCCCCcCcCcCc
Confidence 57999999998764 88889999999999999999999 677 99888889999999963
No 4
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio}
Probab=98.81 E-value=4.7e-09 Score=67.74 Aligned_cols=41 Identities=27% Similarity=0.672 Sum_probs=35.9
Q ss_pred ecCCCeeeEECCCceEEeeecCCCCC--CCCccccCCCcccCC
Q psy10996 12 LSADCEECKCERGIKFCSKVECPKLP--EACTKSEIGQCCPVC 52 (192)
Q Consensus 12 ~~~~C~~C~C~~g~v~C~~~~Cp~~~--C~~~~~~~g~CCp~C 52 (192)
..++|++|+|++|.+.|.++.||.+. |..++..+|+|||.|
T Consensus 23 ~~~~C~~C~C~~G~v~C~~~~CP~l~~~C~~~~~~~g~CCp~C 65 (67)
T 3bk3_C 23 TDNPCISCVCLNQKAECKQEKCAPLAEDCALVVKQTGACCEKC 65 (67)
T ss_dssp TTSTTEEEEECSSBEEEEECCCCCCCTTCCCEECCTTCSSCEE
T ss_pred cCCCcceeEecCCceEEccccCCCCccccCCcccCCCCcCcCc
Confidence 44789999999999999999999887 888877889999887
No 5
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A
Probab=96.19 E-value=0.0062 Score=33.89 Aligned_cols=30 Identities=37% Similarity=1.077 Sum_probs=26.6
Q ss_pred ecCCCEEecCCCeeeEEC-CCceEEeeecCCC
Q psy10996 5 CENGTSWLSADCEECKCE-RGIKFCSKVECPK 35 (192)
Q Consensus 5 y~~G~~w~~~~C~~C~C~-~g~v~C~~~~Cp~ 35 (192)
-.+|++|. +.|.+|+|. +|.+.|+...|+.
T Consensus 4 C~pG~~~~-~dCNtC~C~~~G~W~CT~~~Cp~ 34 (36)
T 2xtt_A 4 CEPGQTKK-QDCNTCRCGSDGVWACTRMGCPP 34 (36)
T ss_dssp SCTTCEEE-ETTEEEEECTTSCEEEECCCCCC
T ss_pred CCCCCEEE-CCCCccCCCCCCEEeeeCCcCCC
Confidence 35799999 489999999 9999999999984
No 6
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A
Probab=96.07 E-value=0.0063 Score=33.88 Aligned_cols=28 Identities=29% Similarity=0.681 Sum_probs=24.6
Q ss_pred cCCCeeccCCcceeEEC-CCCceeeccccC
Q psy10996 133 QENQEWRLDACTSCVCK-DRSHHCTQRICS 161 (192)
Q Consensus 133 ~~G~~w~~~~C~~C~C~-~g~v~C~~~~C~ 161 (192)
.+|++|+. +|.+|+|. +|.+.|+++.|+
T Consensus 5 ~pG~~~~~-dCNtC~C~~~G~W~CT~~~Cp 33 (36)
T 2xtt_A 5 EPGQTKKQ-DCNTCRCGSDGVWACTRMGCP 33 (36)
T ss_dssp CTTCEEEE-TTEEEEECTTSCEEEECCCCC
T ss_pred CCCCEEEC-CCCccCCCCCCEEeeeCCcCC
Confidence 46888888 79999999 999999998883
No 7
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1
Probab=95.76 E-value=0.015 Score=31.89 Aligned_cols=30 Identities=30% Similarity=0.814 Sum_probs=26.1
Q ss_pred ecCCCEEecCCCeeeEECC-CceEEeeecCCC
Q psy10996 5 CENGTSWLSADCEECKCER-GIKFCSKVECPK 35 (192)
Q Consensus 5 y~~G~~w~~~~C~~C~C~~-g~v~C~~~~Cp~ 35 (192)
-.+|++|. +.|..|+|.+ |+..|+.+.|.+
T Consensus 4 C~PG~~~k-~~CN~C~C~~~G~~~CTlk~C~P 34 (35)
T 1gl0_I 4 CTPGQVKQ-QDCNTCTCTPTGVWGCTLMGCQP 34 (35)
T ss_dssp CCTTCEEE-CSSCEEEECTTSCEEEECCCCCC
T ss_pred cCCCcccc-cCCCccCCCCCCeEEEEeecccC
Confidence 35799999 6899999977 899999999974
No 8
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1
Probab=94.88 E-value=0.028 Score=30.79 Aligned_cols=27 Identities=26% Similarity=0.571 Sum_probs=23.5
Q ss_pred cCCCeeccCCcceeEECC-CCceeecccc
Q psy10996 133 QENQEWRLDACTSCVCKD-RSHHCTQRIC 160 (192)
Q Consensus 133 ~~G~~w~~~~C~~C~C~~-g~v~C~~~~C 160 (192)
.+|+.|+. .|..|+|.+ |...|+++.|
T Consensus 5 ~PG~~~k~-~CN~C~C~~~G~~~CTlk~C 32 (35)
T 1gl0_I 5 TPGQVKQQ-DCNTCTCTPTGVWGCTLMGC 32 (35)
T ss_dssp CTTCEEEC-SSCEEEECTTSCEEEECCCC
T ss_pred CCCccccc-CCCccCCCCCCeEEEEeecc
Confidence 36889986 799999985 9999999888
No 9
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A
Probab=94.58 E-value=0.029 Score=37.72 Aligned_cols=35 Identities=23% Similarity=0.713 Sum_probs=30.9
Q ss_pred ccee-eCCEEecCCCeeccCCcceeEECCCCceeec
Q psy10996 123 SGCT-VGNVTYQENQEWRLDACTSCVCKDRSHHCTQ 157 (192)
Q Consensus 123 ~~C~-~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~ 157 (192)
..|. ++|+.+.-|++|+.+.|..|+|.+..+.|-.
T Consensus 13 ~~C~D~~G~kh~l~s~W~T~dC~~C~C~~~Gi~CC~ 48 (91)
T 1xhh_A 13 NECQDLKGVSHPLNSVWKTKDCEECTCGQDAISCCN 48 (91)
T ss_dssp TEEEETTTEEEECCCCEECSSSEEEEECSSEEEEEE
T ss_pred CCCCcCCCcEEeCCCeECCCCceEeEecCCCcEeec
Confidence 4699 8999999999999999999999977777765
No 10
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1
Probab=94.48 E-value=0.028 Score=31.02 Aligned_cols=27 Identities=26% Similarity=0.745 Sum_probs=24.1
Q ss_pred cCCCeeccCCcceeEEC-CCCceeecccc
Q psy10996 133 QENQEWRLDACTSCVCK-DRSHHCTQRIC 160 (192)
Q Consensus 133 ~~G~~w~~~~C~~C~C~-~g~v~C~~~~C 160 (192)
.+|++++. +|.+|+|. +|.+.|+...|
T Consensus 5 ~pG~ti~~-dCNtCtC~~~g~W~CT~~~C 32 (35)
T 1wo9_A 5 TPGQTKKQ-DCNTCTCTPTGIWGCTRKAC 32 (35)
T ss_dssp CTTCEEEE-TTEEEEECTTSCEECCCSSS
T ss_pred CCCCEEEC-CCCceECCCCCEEcCCCCCC
Confidence 46888888 89999999 99999999877
No 11
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A
Probab=93.55 E-value=0.051 Score=36.86 Aligned_cols=37 Identities=24% Similarity=0.668 Sum_probs=29.3
Q ss_pred CCccee-eCCEEecCCCeeccCCcceeEECCCCceeec
Q psy10996 121 VPSGCT-VGNVTYQENQEWRLDACTSCVCKDRSHHCTQ 157 (192)
Q Consensus 121 ~~~~C~-~~g~~y~~G~~w~~~~C~~C~C~~g~v~C~~ 157 (192)
...+|. ++|+.|.-|++|+.+.|..|+|.+..+.|-.
T Consensus 14 ~~~~C~D~dG~~h~l~S~W~T~~C~~C~C~~~Gi~CC~ 51 (94)
T 3ix0_A 14 STRKCMDLKGNKHPINSEWQTDNCETCTCYETEISCCT 51 (94)
T ss_dssp ---CEECTTSCEECTTCEEECTTSEEEEECSSEEEEEE
T ss_pred CCCcCCCCCCCEEeCCCEECCCCCcEeEecCCCceecc
Confidence 347898 7899999999999999999999865566544
No 12
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1
Probab=93.46 E-value=0.07 Score=29.39 Aligned_cols=30 Identities=33% Similarity=0.884 Sum_probs=26.1
Q ss_pred ecCCCEEecCCCeeeEEC-CCceEEeeecCCC
Q psy10996 5 CENGTSWLSADCEECKCE-RGIKFCSKVECPK 35 (192)
Q Consensus 5 y~~G~~w~~~~C~~C~C~-~g~v~C~~~~Cp~ 35 (192)
-.+|++++. +|.+|+|. +|...|+...|+.
T Consensus 4 c~pG~ti~~-dCNtCtC~~~g~W~CT~~~C~~ 34 (35)
T 1wo9_A 4 CTPGQTKKQ-DCNTCTCTPTGIWGCTRKACRT 34 (35)
T ss_dssp CCTTCEEEE-TTEEEEECTTSCEECCCSSSSC
T ss_pred CCCCCEEEC-CCCceECCCCCEEcCCCCCCCC
Confidence 467999995 89999999 9999999998873
No 13
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=90.35 E-value=0.25 Score=27.52 Aligned_cols=28 Identities=25% Similarity=0.735 Sum_probs=22.1
Q ss_pred cCCCeeccCCcceeEEC-CCC-ceeeccccC
Q psy10996 133 QENQEWRLDACTSCVCK-DRS-HHCTQRICS 161 (192)
Q Consensus 133 ~~G~~w~~~~C~~C~C~-~g~-v~C~~~~C~ 161 (192)
.+|++|+. .|.+|+|. +|. ..|+.+.||
T Consensus 8 ~Pg~tFk~-~CNtC~C~~dG~~a~CT~k~Cp 37 (38)
T 3tvj_I 8 EPGTTFKD-KCNTCRCGSDGKSAVCTKLWCN 37 (38)
T ss_dssp CTTCEEEE-TTEEEEECTTSSCEEEECCEEC
T ss_pred CCCCeeec-cCceeECCCCCceeEeecccCC
Confidence 47889997 89999997 566 478887663
No 14
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A
Probab=89.78 E-value=0.35 Score=26.91 Aligned_cols=31 Identities=35% Similarity=1.021 Sum_probs=24.7
Q ss_pred eecCCCEEecCCCeeeEECC-Cc-eEEeeecCCC
Q psy10996 4 SCENGTSWLSADCEECKCER-GI-KFCSKVECPK 35 (192)
Q Consensus 4 ~y~~G~~w~~~~C~~C~C~~-g~-v~C~~~~Cp~ 35 (192)
.-.+|++|. +.|.+|+|.. |. ..|+.+.||+
T Consensus 6 ~C~Pg~tFk-~~CNtC~C~~dG~~a~CT~k~Cp~ 38 (38)
T 3tvj_I 6 TCEPGTTFK-DKCNTCRCGSDGKSAVCTKLWCNQ 38 (38)
T ss_dssp CCCTTCEEE-ETTEEEEECTTSSCEEEECCEECC
T ss_pred ccCCCCeee-ccCceeECCCCCceeEeecccCCc
Confidence 346899999 5999999964 54 6899998873
No 15
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A
Probab=87.60 E-value=0.6 Score=31.50 Aligned_cols=30 Identities=20% Similarity=0.617 Sum_probs=25.8
Q ss_pred CceecCCCEEecCCCeeeEECCCceEEeee
Q psy10996 2 NESCENGTSWLSADCEECKCERGIKFCSKV 31 (192)
Q Consensus 2 G~~y~~G~~w~~~~C~~C~C~~g~v~C~~~ 31 (192)
|+.|.-|++|..+.|..|.|....+.|-..
T Consensus 23 G~~h~l~S~W~T~~C~~C~C~~~Gi~CC~~ 52 (94)
T 3ix0_A 23 GNKHPINSEWQTDNCETCTCYETEISCCTL 52 (94)
T ss_dssp SCEECTTCEEECTTSEEEEECSSEEEEEEC
T ss_pred CCEEeCCCEECCCCCcEeEecCCCceeccC
Confidence 789999999999999999998777777643
No 16
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A
Probab=87.10 E-value=0.58 Score=31.35 Aligned_cols=30 Identities=30% Similarity=0.711 Sum_probs=26.3
Q ss_pred CceecCCCEEecCCCeeeEECCCceEEeee
Q psy10996 2 NESCENGTSWLSADCEECKCERGIKFCSKV 31 (192)
Q Consensus 2 G~~y~~G~~w~~~~C~~C~C~~g~v~C~~~ 31 (192)
|+.+.-|+.|..+.|..|.|.+..+.|-..
T Consensus 20 G~kh~l~s~W~T~dC~~C~C~~~Gi~CC~~ 49 (91)
T 1xhh_A 20 GVSHPLNSVWKTKDCEECTCGQDAISCCNT 49 (91)
T ss_dssp TEEEECCCCEECSSSEEEEECSSEEEEEEC
T ss_pred CcEEeCCCeECCCCceEeEecCCCcEeecC
Confidence 788999999999999999999888877653
No 17
>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B*
Probab=74.90 E-value=2.4 Score=28.38 Aligned_cols=35 Identities=20% Similarity=0.541 Sum_probs=27.9
Q ss_pred ceeeCCEEecCCCeecc----CCcceeEEC---CCCceeecc
Q psy10996 124 GCTVGNVTYQENQEWRL----DACTSCVCK---DRSHHCTQR 158 (192)
Q Consensus 124 ~C~~~g~~y~~G~~w~~----~~C~~C~C~---~g~v~C~~~ 158 (192)
.|+.+|..|..|++|.. .-=..|+|. .|.+.|...
T Consensus 2 ~C~~~g~~Y~VG~~w~k~~e~G~mm~CTC~G~GrG~wkC~~~ 43 (93)
T 3ejh_A 2 QCIVDDITYNVQDTFHKKHEEGHMLNCTCFGQGRGRWKCDPV 43 (93)
T ss_dssp EEEETTEEEETTEEEEEECTTSCEEEEEEEETTTTEEEEEEC
T ss_pred ccEECCcEEecCCEEEecccCCCEEEeEEcCCCcccEEecCC
Confidence 58999999999999964 255689997 367888764
No 18
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A
Probab=72.06 E-value=3.8 Score=27.25 Aligned_cols=36 Identities=25% Similarity=0.652 Sum_probs=27.6
Q ss_pred CcceeeCCEEecCCCeeccC-----CcceeEEC---CCCceeec
Q psy10996 122 PSGCTVGNVTYQENQEWRLD-----ACTSCVCK---DRSHHCTQ 157 (192)
Q Consensus 122 ~~~C~~~g~~y~~G~~w~~~-----~C~~C~C~---~g~v~C~~ 157 (192)
...|..+|+.|.-|++|... .=..|+|. .|.+.|..
T Consensus 46 ~~~C~~~g~~Y~IGetW~k~~~~~~~~~~CtClGngkGew~C~p 89 (90)
T 2cg7_A 46 ANRCHEGGQSYKIGDTWRRPHETGGYMLECVCLGNGKGEWTCKP 89 (90)
T ss_dssp TTEEEETTEEEETTCEEEEECTTSSSEEEEEEEETTTTEEEEEE
T ss_pred cceeeeCCcEEecCceEeeccccCCceEEEEEeCCCcccEEeee
Confidence 35799999999999999752 24589997 35688764
No 19
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=69.89 E-value=3.7 Score=25.68 Aligned_cols=37 Identities=22% Similarity=0.604 Sum_probs=28.3
Q ss_pred CcceeeCCEEecCCCeecc--C--CcceeEEC---CCCceeecc
Q psy10996 122 PSGCTVGNVTYQENQEWRL--D--ACTSCVCK---DRSHHCTQR 158 (192)
Q Consensus 122 ~~~C~~~g~~y~~G~~w~~--~--~C~~C~C~---~g~v~C~~~ 158 (192)
...|..+|+.|+.|++|.. + -=..|+|. .|.+.|...
T Consensus 17 ~~~C~d~G~~YrIGe~W~r~~e~G~mm~CtClGnGrGe~~C~~~ 60 (68)
T 2ec3_A 17 SRWCHDNGVNYKIGEKWDRQGENGQMMSCTCLGNGKGEFKCDPH 60 (68)
T ss_dssp SSCBCSSSCCBCTTCEEEEECSSSSEEEEEEEETTTTEEEEEEC
T ss_pred cCceecCCeeEEcCceEeecccCCCEEEEEEecCCcccEEeeCc
Confidence 3679889999999999964 1 35579997 467888764
No 20
>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A
Probab=67.93 E-value=3.2 Score=27.77 Aligned_cols=35 Identities=29% Similarity=0.688 Sum_probs=26.6
Q ss_pred cceeeCCEEecCCCeecc---CCcceeEECC-CC-ceeec
Q psy10996 123 SGCTVGNVTYQENQEWRL---DACTSCVCKD-RS-HHCTQ 157 (192)
Q Consensus 123 ~~C~~~g~~y~~G~~w~~---~~C~~C~C~~-g~-v~C~~ 157 (192)
..|..+|+.|..|++|.. +.=..|+|.. +. +.|..
T Consensus 3 ~~C~d~G~~Y~iGeqWer~~~G~~l~CTC~G~g~G~~C~s 42 (93)
T 1o9a_A 3 PGCYDNGKHYQINQQWERTYLGNALVCTCYGGSRGFNCES 42 (93)
T ss_dssp SSCBCSSCBCCTTCEEEEEETTEEEEEEECSSTTCEEEEE
T ss_pred ceEEcCCeEeecCCEEeeccCCCEEEEEEcCCCcceEecC
Confidence 579999999999999963 3455799973 32 77854
No 21
>2rl0_A Fibronectin; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 2.00A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1fbr_A 2rky_A
Probab=63.73 E-value=6.5 Score=26.05 Aligned_cols=35 Identities=17% Similarity=0.619 Sum_probs=25.7
Q ss_pred cceeeC--CEEecCCCeeccC----CcceeEEC---CCCceeec
Q psy10996 123 SGCTVG--NVTYQENQEWRLD----ACTSCVCK---DRSHHCTQ 157 (192)
Q Consensus 123 ~~C~~~--g~~y~~G~~w~~~----~C~~C~C~---~g~v~C~~ 157 (192)
..|..+ |+.|.-|++|... .=..|+|. .|.+.|.+
T Consensus 46 ~~C~D~~tG~~Y~iGetW~k~~~~G~~~~C~C~GngrGew~Ce~ 89 (89)
T 2rl0_A 46 NRCNDQDTRTSYRIGDTWSKKDNRGNLLQCICTGNGRGEWKCER 89 (89)
T ss_dssp TEEEETTTTEEEETTCEEEEECSSSCEEEEEEEETTTTEEEEEC
T ss_pred CcccccCCceEEEcCceeecCccCCcEEEEEEeCCCceeEEecC
Confidence 467776 9999999999742 35678886 46667653
No 22
>2j5h_A Teratocarcinoma-derived growth factor; hormone/growth factor, EGF-CFC family, cripto, tumour progression, cysteine-rich domains; NMR {Mus musculus} SCOP: g.3.11.7
Probab=61.23 E-value=3.6 Score=23.14 Aligned_cols=24 Identities=25% Similarity=0.721 Sum_probs=20.9
Q ss_pred eeccCCcceeEECCCCceeecccc
Q psy10996 137 EWRLDACTSCVCKDRSHHCTQRIC 160 (192)
Q Consensus 137 ~w~~~~C~~C~C~~g~v~C~~~~C 160 (192)
.|....|.+|+|..|...|.+.+-
T Consensus 12 ~W~~k~C~LCRC~~G~LhCfp~~~ 35 (41)
T 2j5h_A 12 TWLPKKCSLCRCWHGQLHCLPQTF 35 (41)
T ss_dssp TCSSCCCCCCCCCSSSCCSCCSSS
T ss_pred CeeecCceEEEeecCceEEccccc
Confidence 588889999999999999887654
No 23
>1bx7_A Hirustasin; anti-coagulant, peptidic inhibitors, conformational flexibility, serine protease inhibitor; 1.20A {Hirudo medicinalis} SCOP: g.3.15.1 PDB: 1bx8_A 1hia_I
Probab=35.90 E-value=37 Score=20.11 Aligned_cols=31 Identities=19% Similarity=0.561 Sum_probs=21.4
Q ss_pred EECCCCceeeccccCCCCCCCccCCCCCccc
Q psy10996 147 VCKDRSHHCTQRICSVTCSNPMTIPNQCCPL 177 (192)
Q Consensus 147 ~C~~g~v~C~~~~C~~~C~~~~~~~g~CCp~ 177 (192)
.|.++.-.|+...|...|+++++....-|++
T Consensus 16 ~c~~~kcvC~~~~Cri~Cp~GFk~DeNGCe~ 46 (55)
T 1bx7_A 16 VCLKGKCVCNEVHCRIRCKYGLKKDENGCEY 46 (55)
T ss_dssp EEETTEEEECCCCCCCCCTTCBCCCTTSCCC
T ss_pred EEecCcEEeehhheEEeCCCcceECCCCCcc
Confidence 3455666777777777899988766655655
No 24
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor, thrombosis; 1.90A {Haementeria officinalis} SCOP: g.3.15.1 g.3.15.1
Probab=23.13 E-value=23 Score=24.68 Aligned_cols=24 Identities=21% Similarity=0.564 Sum_probs=13.5
Q ss_pred eccccCCCCCCCccCCCCCccccc
Q psy10996 156 TQRICSVTCSNPMTIPNQCCPLCL 179 (192)
Q Consensus 156 ~~~~C~~~C~~~~~~~g~CCp~C~ 179 (192)
....|.+.|++++...+..|++|.
T Consensus 29 ~~~~C~l~C~~Gf~~D~~GC~~C~ 52 (119)
T 1skz_A 29 SGVRCRVHCPHGFQRSRYGCEFCK 52 (119)
T ss_dssp CCCSSCCCCTTCEEECTTSCEEEE
T ss_pred ccCccCCcCCCcceECCCCCCCCC
Confidence 334444566666666666666553
Done!