RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10996
         (192 letters)



>gnl|CDD|215712 pfam00093, VWC, von Willebrand factor type C domain.  The high
           cutoff was used to prevent overlap with pfam00094.
          Length = 57

 Score = 36.2 bits (84), Expect = 6e-04
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 125 CTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS-VTCSNPMTIPN--QCCPLC 178
           C    V Y+  + W+ D CT C C D    C +  C  + C +P       +CCP+C
Sbjct: 1   CVQNGVVYENGETWKPDLCTICTCDDGKVLCDKITCPPLDCPSPRLEIPPGECCPVC 57



 Score = 31.6 bits (72), Expect = 0.032
 Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 51 VCLDCTCREGKVLCYSQQCPAAACSNPRP-PEPGTCCPRC 89
          +C  CTC +GKVLC    CP   C +PR    PG CCP C
Sbjct: 18 LCTICTCDDGKVLCDKITCPPLDCPSPRLEIPPGECCPVC 57



 Score = 27.8 bits (62), Expect = 0.64
 Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 6  ENGTSWLSADCEECKCERGIKFCSKVECPKL--PEACTKSEIGQCCPVC 52
          ENG +W    C  C C+ G   C K+ CP L  P    +   G+CCPVC
Sbjct: 9  ENGETWKPDLCTICTCDDGKVLCDKITCPPLDCPSPRLEIPPGECCPVC 57


>gnl|CDD|214564 smart00214, VWC, von Willebrand factor (vWF) type C domain. 
          Length = 59

 Score = 31.3 bits (71), Expect = 0.038
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 125 CTVGNVTYQENQEWRLDACTSCVCKDRSH-HCTQRIC--SVTCSNPMTI--PNQCCPLC 178
           C      Y + + W+ D C  C C D +   C    C     C NP  +  P +CCP C
Sbjct: 1   CVHNGRVYNDGETWKPDPCQICTCLDGTTVLCDPVECPPPPDCPNPERVKPPGECCPRC 59



 Score = 25.9 bits (57), Expect = 3.3
 Identities = 20/42 (47%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 51 VCLDCTCREGK-VLCYSQQCPAA-ACSNPRPPE-PGTCCPRC 89
           C  CTC +G  VLC   +CP    C NP   + PG CCPRC
Sbjct: 18 PCQICTCLDGTTVLCDPVECPPPPDCPNPERVKPPGECCPRC 59


>gnl|CDD|236584 PRK09602, PRK09602, translation-associated GTPase; Reviewed.
          Length = 396

 Score = 29.4 bits (67), Expect = 1.1
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 20/48 (41%)

Query: 144 TSCVCKDRSHHCTQRICSVTCSNPMTIPNQCCPLCLGECTNSVRFIPI 191
             C CK+    C  R                     G+C +  RFIP+
Sbjct: 47  VECPCKELGVKCNPR--------------------NGKCIDGTRFIPV 74


>gnl|CDD|239799 cd04271, ZnMc_ADAM_fungal, Zinc-dependent metalloprotease,
           ADAM_fungal subgroup. The adamalysin_like or ADAM (A
           Disintegrin And Metalloprotease) family of
           metalloproteases are integral membrane proteases acting
           on a variety of extracellular targets. They are involved
           in shedding soluble peptides or proteins from the cell
           surface. This subfamily contains fungal ADAMs, whose
           precise function has yet to be determined.
          Length = 228

 Score = 28.9 bits (65), Expect = 1.5
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)

Query: 152 SHHCTQRICSVTCSNPMTIPNQCCPLCLGECTNSVRFI 189
            H CT    S TCS+      QCCPL    C  + ++I
Sbjct: 160 VHDCT----SGTCSDGSVGSQQCCPLSTSTCDANGQYI 193


>gnl|CDD|225542 COG2995, PqiA, Uncharacterized paraquat-inducible protein A
           [Function unknown].
          Length = 418

 Score = 28.9 bits (65), Expect = 1.9
 Identities = 12/40 (30%), Positives = 13/40 (32%), Gaps = 7/40 (17%)

Query: 50  PVCLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRC 89
           P  L    REG   C         C    P +    CPRC
Sbjct: 209 PQTLATGAREGLRSC-------LCCHYILPHDAEPRCPRC 241


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.135    0.480 

Gapped
Lambda     K      H
   0.267   0.0603    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,744,496
Number of extensions: 714595
Number of successful extensions: 592
Number of sequences better than 10.0: 1
Number of HSP's gapped: 572
Number of HSP's successfully gapped: 45
Length of query: 192
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 100
Effective length of database: 6,857,034
Effective search space: 685703400
Effective search space used: 685703400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.6 bits)