RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10996
(192 letters)
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two
SUB-domain architecture, beta-sheet, structural protein;
NMR {Homo sapiens} SCOP: g.27.1.2
Length = 73
Score = 43.8 bits (103), Expect = 1e-06
Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 122 PSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS--VTCSNPMTIPNQCCPLCL 179
C Y + W+ + C CVC + C IC C +P +CCP+C
Sbjct: 7 AGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICP 66
Query: 180 GECTNS 185
+ +
Sbjct: 67 ADLAAA 72
Score = 34.2 bits (78), Expect = 0.003
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 6 ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEI-GQCCPVCLD 54
+ W C C C+ G C + C + + + G+CCP+C
Sbjct: 18 NDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPA 67
Score = 33.0 bits (75), Expect = 0.010
Identities = 13/38 (34%), Positives = 13/38 (34%)
Query: 52 CLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRC 89
C C C G VLC C G CCP C
Sbjct: 28 CRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPIC 65
>3f6k_A Sortilin; protein sorting receptor, 10-bladed beta-propeller,
Cys-rich ssortilin, sortilin VPS10P-D, protein-peptide
complex, DEVE protein; HET: NAG BMA PGE; 2.00A {Homo
sapiens}
Length = 685
Score = 31.1 bits (69), Expect = 0.22
Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 11/118 (9%)
Query: 57 CREGKVLCYSQQCPAAACSNPRPPEPGT----CCPRCAGADEITALVVENDGNDKDCGDA 112
C G + + ++ C N R C C+ D + ND C +
Sbjct: 557 CILGYKEQFLRLRKSSMCQNGRDYVVTKQPSIC--LCSLEDFLCDFGYYRPENDSKCVEQ 614
Query: 113 LLPKPADLVPSGCTVGNVTYQENQEWR---LDACTSCVCKDRSHHCTQRICSVTCSNP 167
K D C G + +R D C V R ++ C+ +P
Sbjct: 615 PELKGHD--LEFCLYGREEHLTTNGYRKIPGDKCQGGVNPVREVKDLKKKCTSNFLSP 670
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta
superfamily, BMP modulator proteins, chordin, BMP
inhibitor, chondrogenesis; 2.70A {Danio rerio}
Length = 67
Score = 27.0 bits (59), Expect = 0.97
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 52 CLDCTCREGKVLCYSQQCPAAACSNPRP-PEPGTCCPRCAG 91
C+ C C K C ++C A + G CC +C G
Sbjct: 27 CISCVCLNQKAECKQEKCAPLAEDCALVVKQTGACCEKCKG 67
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.5 bits (63), Expect = 0.99
Identities = 10/54 (18%), Positives = 13/54 (24%), Gaps = 13/54 (24%)
Query: 86 CPRCAGADEITALVVENDGNDKDCGDALLPKPADLVPSGCTVGNVTYQENQEWR 139
CP C +V D C G + + EWR
Sbjct: 24 CPECKVYP--PKIVERFSEGDVVCAL-----------CGLVLSDKLVDTRSEWR 64
>2pw4_A Uncharacterized protein DUF1470; YP_510353.1, protein of unknown
function DUF1470, structural genomics, joint center for
structural genomics, JCSG; HET: MSE; 1.45A {Jannaschia
SP} SCOP: d.380.1.1 PDB: 3h0n_A*
Length = 188
Score = 27.8 bits (61), Expect = 1.9
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 139 RLDACTSCVCK----DRSHHCTQRICSVTCSNPM 168
R C + C D S + T++ CS+ C N +
Sbjct: 144 RFGICNAHRCDRVYFDTSRNGTRQYCSLACQNRV 177
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition,
kinase-INH complex, rubredoxin fold, TPR domain,
transferase; HET: AXX; 2.40A {Mycobacterium
tuberculosis}
Length = 681
Score = 28.3 bits (63), Expect = 2.0
Identities = 7/18 (38%), Positives = 8/18 (44%)
Query: 72 AACSNPRPPEPGTCCPRC 89
A +NP PE C C
Sbjct: 23 ALMTNPVVPESKRFCWNC 40
>2v4b_A Adamts-1; zymogen, protease, hydrolase, metalloprotease,
heparin-binding, metalloproteinase, metzincin,
glycoprotein metal-binding; 2.00A {Homo sapiens} PDB:
2jih_A 3q2g_A* 3q2h_A*
Length = 300
Score = 26.7 bits (59), Expect = 5.1
Identities = 13/75 (17%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 106 DKDCGDALLPKPADLVPSGCTVGNVTYQENQEWRLDACTSC-VCKDRSHHCTQRICSVTC 164
D G+ L+ KP + + + +Y N++ + C D + C+ C+ T
Sbjct: 204 DNGHGECLMDKPQNPIQLPGDLPGTSYDANRQCQFTFGEDSKHCPDAASTCSTLWCTGTS 263
Query: 165 SNPMTIPNQCCPLCL 179
C
Sbjct: 264 G-----GVLVCQTKH 273
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS
finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2
b.113.1.1 g.39.1.8
Length = 364
Score = 26.1 bits (57), Expect = 8.0
Identities = 11/64 (17%), Positives = 17/64 (26%), Gaps = 4/64 (6%)
Query: 32 ECPKLPEACTKSEIGQCCPVCLDCTCREGKVLC--YSQQCPAAACSNPRPPEPGTCCPRC 89
+ T G P+ R+ + +Q P + PP R
Sbjct: 269 SSLQDRHGRTIWFQGDPGPLA--PKGRKSRKKKSKATQLSPEDRVEDALPPSKAPSRTRR 326
Query: 90 AGAD 93
A D
Sbjct: 327 AKRD 330
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative
splicing, disulfide bond, polymorphism, secreted,
protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A
Length = 94
Score = 25.1 bits (54), Expect = 8.3
Identities = 12/72 (16%), Positives = 20/72 (27%), Gaps = 6/72 (8%)
Query: 109 CGDALLPKPADLVPSGCT-VGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICSVTCSNP 167
C C + + N EW+ D C +C C + C + + P
Sbjct: 2 CYFIPNEGVPGDSTRKCMDLKGNKHPINSEWQTDNCETCTCYETEISCCTLVST-----P 56
Query: 168 MTIPNQCCPLCL 179
+ C
Sbjct: 57 VGYDKDNCQRIF 68
>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, disease mutation,
heme biosynthesis, iron, iron-sulfur, lyase, membrane,
metal-BIN mitochondrion; HET: CHD HEM GOL; 1.60A {Homo
sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A*
2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 3aqi_A*
2pnj_A* 2po5_A* 2po7_A*
Length = 359
Score = 26.0 bits (58), Expect = 9.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 43 SEIGQCCPVCLDCTCREGKVLCYSQQ 68
++ CP+C++ CRE K SQQ
Sbjct: 333 KQLTLSCPLCVNPVCRETKSFFTSQQ 358
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.135 0.480
Gapped
Lambda K H
0.267 0.0564 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,983,281
Number of extensions: 182015
Number of successful extensions: 1226
Number of sequences better than 10.0: 1
Number of HSP's gapped: 927
Number of HSP's successfully gapped: 311
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.9 bits)