RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10996
         (192 letters)



>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 73

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 122 PSGCTVGNVTYQENQEWRLDACTSCVCKDRSHHCTQRICS--VTCSNPMTIPNQCCPLCL 179
              C      Y +   W+ + C  CVC   +  C   IC     C +P     +CCP+C 
Sbjct: 7   AGSCVQDGQRYNDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICP 66

Query: 180 GECTNS 185
            +   +
Sbjct: 67  ADLAAA 72



 Score = 33.8 bits (77), Expect = 0.002
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 6  ENGTSWLSADCEECKCERGIKFCSKVECPKLPEACTKSEI-GQCCPVC 52
           +   W    C  C C+ G   C  + C  + +  +     G+CCP+C
Sbjct: 18 NDKDVWKPEPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPIC 65



 Score = 33.4 bits (76), Expect = 0.002
 Identities = 13/38 (34%), Positives = 13/38 (34%)

Query: 52 CLDCTCREGKVLCYSQQCPAAACSNPRPPEPGTCCPRC 89
          C  C C  G VLC    C             G CCP C
Sbjct: 28 CRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPIC 65


>d2pw4a1 d.380.1.1 (A:1-184) Uncharacterized protein Jann2411
           {Jannaschia sp. ccs1 [TaxId: 290400]}
          Length = 184

 Score = 29.1 bits (65), Expect = 0.24
 Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)

Query: 139 RLDACTSCVCK----DRSHHCTQRICSVTCSN 166
           R   C +  C     D S + T++ CS+ C N
Sbjct: 143 RFGICNAHRCDRVYFDTSRNGTRQYCSLACQN 174


>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon
           Thermoplasma acidophilum, beta chain [TaxId: 2303]}
          Length = 152

 Score = 24.6 bits (53), Expect = 6.0
 Identities = 4/43 (9%), Positives = 13/43 (30%)

Query: 140 LDACTSCVCKDRSHHCTQRICSVTCSNPMTIPNQCCPLCLGEC 182
           L        +        ++   T ++ ++  ++     LG  
Sbjct: 88  LSRAGIYAVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTA 130


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.135    0.480 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 792,148
Number of extensions: 43377
Number of successful extensions: 323
Number of sequences better than 10.0: 1
Number of HSP's gapped: 257
Number of HSP's successfully gapped: 94
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.3 bits)