BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10998
(514 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HU3|A Chain A, Middle Domain Of Human Eif4gii
Length = 260
Score = 177 bits (449), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 101/262 (38%), Positives = 139/262 (53%), Gaps = 10/262 (3%)
Query: 182 EKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAK 241
++ +++VR +LNKLTP+ F + Q ++T +RL VIDLVF+KAI EPSFS YA
Sbjct: 9 QELFRKVRSILNKLTPQXFNQLXKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYAN 68
Query: 242 MCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQXXXXXXXXXXXXXDIKLDEIEAE 301
C ++ +V KP N +VNF+ LLLN+CQ + K E+EA
Sbjct: 69 XCRCLVTLKVPXADKPGN------TVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAA 122
Query: 302 QDPXXXXXXXXXXXXXXXXXXKRSVGNCRFIGELYKLNMLTTKIMHHCISXXXXXXXXXX 361
P +RS+GN +FIGEL+KL LT I H C+
Sbjct: 123 SAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKXLTEAIXHDCVVKLLKNHDEES 182
Query: 362 XXRACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRK 421
C+LL+TIGKDL+ P + YF E++ ++ + SSR+RF LQDVIDLR
Sbjct: 183 LECLCRLLTTIGKDLDFEKAKP-RXDQYFNQXEKIVKERKT---SSRIRFXLQDVIDLRL 238
Query: 422 NKWIPRRNENKPKTIQQIQYEA 443
W+ RR + PKTI+QI EA
Sbjct: 239 CNWVSRRADQGPKTIEQIHKEA 260
>pdb|2VSO|E Chain E, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|F Chain F, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|E Chain E, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|F Chain F, Crystal Structure Of A Translation Initiation Complex
Length = 284
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 66/266 (24%), Positives = 117/266 (43%), Gaps = 38/266 (14%)
Query: 179 DEDEKFYKQVRGVLNKLTPENFESMK---MQFKEFPINTT--KRLDKVIDLVFQKAIAEP 233
D+DE ++++ +LNKLT E F+++ + + T + L VI+ +F KA EP
Sbjct: 32 DKDE-VERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQIFLKACDEP 90
Query: 234 SFSEFYAKMCYEMMKR---EVVDETKPVNKDGKRPSVNFKNLLLNKCQXXXXXXXXXXXX 290
+S YA++C +++K ++ DET K G + +++ L+ +C
Sbjct: 91 HWSSMYAQLCGKVVKELNPDITDETNE-GKTGPKLVLHY---LVARCHAEFDKGWT---- 142
Query: 291 XDIKLDEIEAEQDPXXXXXXXXXXXXXXXXXXK-RSVGNCRFIGELYKLNMLTTKIMHHC 349
D++ +D K R +G RFIG LY+LN+LT K+M C
Sbjct: 143 -----DKLPTNEDGTPLEPEMMSEEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFEC 197
Query: 350 ----ISXXXXXXXXXXXXRACKLLSTIGKDLESHDKDPTQ--------MKGYFTTMEELA 397
+ +LL+T+G+ E+ Q + F ++ +
Sbjct: 198 FRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLDSLFGILDNII 257
Query: 398 SKKNSHAISSRVRFMLQDVIDLRKNK 423
+ ISSR++F L D+ +LR +K
Sbjct: 258 ---QTAKISSRIKFKLIDIKELRHDK 280
>pdb|3RK6|A Chain A, Crystal Structure Of The Middle Domain Of Human Paip1
pdb|3RK6|B Chain B, Crystal Structure Of The Middle Domain Of Human Paip1
Length = 234
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/96 (30%), Positives = 49/96 (51%), Gaps = 15/96 (15%)
Query: 188 VRGVLNKLT--PENFESMKMQFKEF---PINTTKRLDKVIDLVFQKAIAEPSFSEFYAKM 242
V+ LN LT P +FE+ QF E + T L ++++L++Q+A + P+FS A++
Sbjct: 23 VQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARL 82
Query: 243 CYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQ 278
C + + P S NF+ LLL +C+
Sbjct: 83 CNYLSHHLTI---SP-------QSGNFRQLLLQRCR 108
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 19/105 (18%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 163 IKLRESENAWRPNNNCDEDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVI 222
I RE+ + P + D+ + +V + ++L + F ++ I + K +
Sbjct: 342 ITYRETSLLFDPKTSSASDKLWVTRV--IAHELAHQWFGNLVTMEWWNDIWLNEGFAKYM 399
Query: 223 DLVFQKAIA-EPSFSEFYAKMCYEMMKREVVDETKPVNKDGKRPS 266
+L+ A E F +++ +C+E++ ++ ++ ++P++K + P+
Sbjct: 400 ELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKPAETPT 444
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/105 (18%), Positives = 52/105 (49%), Gaps = 3/105 (2%)
Query: 163 IKLRESENAWRPNNNCDEDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVI 222
I RE+ + P + D+ + +V + ++L + F ++ I + K +
Sbjct: 342 ITYRETSLLFDPKTSSASDKLWVTRV--IAHELAHQWFGNLVTMEWWNDIWLKEGFAKYM 399
Query: 223 DLVFQKAIA-EPSFSEFYAKMCYEMMKREVVDETKPVNKDGKRPS 266
+L+ A E F +++ +C+E++ ++ ++ ++P++K + P+
Sbjct: 400 ELIAVNATYPELQFDDYFLNVCFEVITKDSLNSSRPISKPAETPT 444
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,233,632
Number of Sequences: 62578
Number of extensions: 571886
Number of successful extensions: 865
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 847
Number of HSP's gapped (non-prelim): 22
length of query: 514
length of database: 14,973,337
effective HSP length: 103
effective length of query: 411
effective length of database: 8,527,803
effective search space: 3504927033
effective search space used: 3504927033
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)