Query psy10998
Match_columns 514
No_of_seqs 215 out of 692
Neff 5.9
Searched_HMMs 29240
Date Fri Aug 16 15:34:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hu3_A EIF4GII; heat repeat, t 100.0 1.1E-61 3.9E-66 484.2 21.1 252 182-443 9-260 (260)
2 2vso_E Eukaryotic initiation f 100.0 6.5E-55 2.2E-59 440.6 23.0 247 165-426 2-284 (284)
3 3rk6_A Polyadenylate-binding p 100.0 3.9E-48 1.3E-52 381.2 15.2 199 182-420 17-234 (234)
4 2i2o_A EIF4G-like protein; pro 100.0 1.5E-44 5.3E-49 353.5 14.7 190 195-429 11-213 (224)
5 1uw4_B UPF2, regulator of nons 99.7 8.6E-16 2.9E-20 151.7 16.7 212 184-443 4-240 (248)
6 1h2v_C 80 kDa nuclear CAP bind 98.7 9.9E-08 3.4E-12 107.9 16.1 191 182-426 6-227 (771)
7 4b89_A General negative regula 95.6 0.25 8.4E-06 48.5 14.8 188 181-419 31-224 (249)
8 4gmj_A CCR4-NOT transcription 95.1 0.3 1E-05 47.4 13.5 189 182-419 5-201 (229)
9 1rf8_B Eukaryotic initiation f 94.8 0.011 3.6E-07 50.2 2.0 27 48-78 59-85 (100)
10 3hxi_C Eukaryotic translation 94.4 0.012 4.3E-07 35.8 1.0 18 49-66 4-21 (21)
11 3u0r_A Apoptosis inhibitor 5; 58.7 94 0.0032 33.3 12.7 88 182-276 176-268 (507)
12 3ldz_A STAM-1, signal transduc 29.4 2E+02 0.007 24.9 8.3 108 326-446 23-135 (140)
13 1juq_A ADP-ribosylation factor 29.4 2.1E+02 0.0072 25.8 8.6 111 326-446 31-146 (171)
14 1x5b_A Signal transducing adap 27.7 2.4E+02 0.0082 25.2 8.6 105 327-444 34-144 (163)
15 3zyq_A Hepatocyte growth facto 26.2 2.7E+02 0.0093 26.1 9.1 109 327-446 27-139 (226)
16 3gs3_A Symplekin, LD45768P; he 21.1 3E+02 0.01 26.5 8.4 69 328-396 73-145 (257)
17 3g2s_A C-terminal fragment of 20.8 3.9E+02 0.013 23.5 8.5 111 326-446 29-144 (149)
No 1
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14
Probab=100.00 E-value=1.1e-61 Score=484.17 Aligned_cols=252 Identities=48% Similarity=0.802 Sum_probs=185.9
Q ss_pred HHHHHHHHHHhhcCCccchHHHHHHhhccccCcHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhccccCCCCCCCCC
Q psy10998 182 EKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKD 261 (514)
Q Consensus 182 e~l~rkVr~iLNKLTp~nFd~l~~qll~l~I~t~e~L~~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~~ev~~e~~~v~~d 261 (514)
+.+.|+|+++||||||+||+.|+.+|+++++.+.+.|++||++||+||++||+|+.|||+||..|....++. .+
T Consensus 9 ~~l~r~v~giLNKLT~~nf~~i~~ql~~~~i~~~~~l~~vi~~if~kA~~ep~f~~~YA~Lc~~L~~~~~p~------~~ 82 (260)
T 1hu3_A 9 QELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPM------AD 82 (260)
T ss_dssp HHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC---------
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhCCc------cc
Confidence 899999999999999999999999999999999999999999999999999999999999999998755554 23
Q ss_pred CCCccccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHhhcccC
Q psy10998 262 GKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNML 341 (514)
Q Consensus 262 ~~~~~~~FR~~LL~rCQ~eFe~~~~~~~~~~~k~keie~~~d~e~kkel~~~~eE~~~~~rrR~lGnirFIGELfk~~mL 341 (514)
+++.+..||++||++||++|++.+.+....+++.++++.+.++++++.+..++++...+.|+|++|+|+||||||+++||
T Consensus 83 ~~~~~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~e~ee~~~~~k~r~lg~i~FIgeLy~~~~l 162 (260)
T 1hu3_A 83 KPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKML 162 (260)
T ss_dssp ------CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCS
T ss_pred CCccchHHHHHHHHHHHHHHhcccchhhhHHHHhhhhcccCCHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHhcCCC
Confidence 34467889999999999999998765444444556676666777777776666665567889999999999999999999
Q ss_pred cHHHHHHHHHHhhcCCCChhHHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHh
Q psy10998 342 TTKIMHHCISELLKKTEEEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRK 421 (514)
Q Consensus 342 t~~Im~~cI~~LL~~~dEeslEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k~~~~lssRIRFMIqdliDLR~ 421 (514)
+++|||+||..||.+++|++|||+|.||+|||+.|+.+ .++..|+.||.+|+.++.+ .++|+|+||||+||+|||+
T Consensus 163 ~~~i~~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~~-~~~~~l~~~f~~l~~~~~~---~~ls~Rirfmi~~l~dLR~ 238 (260)
T 1hu3_A 163 TEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFE-KAKPRMDQYFNQMEKIVKE---RKTSSRIRFMLQDVIDLRL 238 (260)
T ss_dssp CHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCCT-TTHHHHHHHHHHHHHHHHS---CSSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999985 4678999999999999864 4899999999999999999
Q ss_pred CCCCCCCCCCCCCCHHHHHHHH
Q psy10998 422 NKWIPRRNENKPKTIQQIQYEA 443 (514)
Q Consensus 422 nnW~~r~~~~~PkTI~qI~kea 443 (514)
|||++++.+.+||||+|||+||
T Consensus 239 ~~W~~~~~~~~pkti~~i~~ea 260 (260)
T 1hu3_A 239 CNWVSRRADQGPKTIEQIHKEA 260 (260)
T ss_dssp TTTCC-----------------
T ss_pred cCCCCCccccCCCcHHHHHhhC
Confidence 9999999999999999999997
No 2
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*
Probab=100.00 E-value=6.5e-55 Score=440.58 Aligned_cols=247 Identities=30% Similarity=0.555 Sum_probs=190.2
Q ss_pred ccccCCcccCCCC---C------C------hhHHHHHHHHHHhhcCCccchHHHHHHhhcccc-----CcHHHHHHHHHH
Q psy10998 165 LRESENAWRPNNN---C------D------EDEKFYKQVRGVLNKLTPENFESMKMQFKEFPI-----NTTKRLDKVIDL 224 (514)
Q Consensus 165 L~~senaW~P~~~---~------d------e~e~l~rkVr~iLNKLTp~nFd~l~~qll~l~I-----~t~e~L~~VI~l 224 (514)
|.+|+|+|+|++. . | +.+.+.|+|++|||||||+||+.|+.+|+++++ ++.+.|++||++
T Consensus 2 l~~s~~~w~P~~~~~~~~~~~~~~~~~~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~vi~~ 81 (284)
T 2vso_E 2 LVPSANRWVPKFKSKKTEKKLAPDGKTELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKAVIEQ 81 (284)
T ss_dssp -----CCCCCC---------------CCCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHHHHHH
T ss_pred CCCCCCCCCChhhhcccccccCCCcccccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHHHHHH
Confidence 6789999999984 1 1 238999999999999999999999999999886 678999999999
Q ss_pred HHHhhhcCCcchHHHHHHHHHHHhcc---ccCCCCCCCCCCCCccccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhh
Q psy10998 225 VFQKAIAEPSFSEFYAKMCYEMMKRE---VVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAE 301 (514)
Q Consensus 225 IFeKAi~Ep~fs~~YA~LC~~L~~~e---v~~e~~~v~~d~~~~~~~FR~~LL~rCQ~eFe~~~~~~~~~~~k~keie~~ 301 (514)
||+||++||+||.|||+||..|.... +.++. ..++.....||++||++||++|++.+.+.....+.....+
T Consensus 82 If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~----~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e-- 155 (284)
T 2vso_E 82 IFLKACDEPHWSSMYAQLCGKVVKELNPDITDET----NEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLE-- 155 (284)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC-------CCTHHHHHHHHHHHHHHHHHHCCCSSCC-----------
T ss_pred HHHHHHcCcchHHHHHHHHHHHHHhcCccccccc----ccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhh--
Confidence 99999999999999999999998732 11110 1122234679999999999999987643222111111110
Q ss_pred cChHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHhhcccCcHHHHHHHHHHhhc----CCCChhHHHHHHHHHHHhhhhh
Q psy10998 302 QDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLK----KTEEEPLERACKLLSTIGKDLE 377 (514)
Q Consensus 302 ~d~e~kkel~~~~eE~~~~~rrR~lGnirFIGELfk~~mLt~~Im~~cI~~LL~----~~dEeslEcLc~LL~tiGk~Ld 377 (514)
.+.+..+. ++..+.|+|++|+|+||||||+++||+++|||+||..||. .++|++|||||.||+|||+.||
T Consensus 156 -----~e~~~~e~-~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld 229 (284)
T 2vso_E 156 -----PEMMSEEY-YAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFE 229 (284)
T ss_dssp --------CCTTH-HHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred -----hhhhhhHH-HHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 01111111 1224678899999999999999999999999999999997 7999999999999999999999
Q ss_pred cCCC--------CchhHHHHHHHHHHHHhhhcCCCCChHHHHHHHHHHHHHhC-CCCC
Q psy10998 378 SHDK--------DPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRKN-KWIP 426 (514)
Q Consensus 378 ~~~k--------~~~~md~~F~~L~~i~~~k~~~~lssRIRFMIqdliDLR~n-nW~~ 426 (514)
..+. ++..|+.||.+|+.++.+ .++|+||||||+||+|||+| ||++
T Consensus 230 ~~~~~~~~~~~~~~~~md~~f~~l~~l~~~---~~ls~RirFml~dlidLR~n~~W~~ 284 (284)
T 2vso_E 230 TDSFRTGQATLEGSQLLDSLFGILDNIIQT---AKISSRIKFKLIDIKELRHDKNWNS 284 (284)
T ss_dssp SCC--------CHHHHHHHHHHHHHHHHTT---SCCCHHHHHHHHHHHHHHHTSTTC-
T ss_pred cccccccccchhhHHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHHHHhcccCCCC
Confidence 8742 257999999999999864 48999999999999999997 9985
No 3
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-48 Score=381.24 Aligned_cols=199 Identities=31% Similarity=0.483 Sum_probs=173.3
Q ss_pred HHHHHHHHHHhhcCC--ccchHHHHHHhhcc---ccCcHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhccccCCCC
Q psy10998 182 EKFYKQVRGVLNKLT--PENFESMKMQFKEF---PINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETK 256 (514)
Q Consensus 182 e~l~rkVr~iLNKLT--p~nFd~l~~qll~l---~I~t~e~L~~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~~ev~~e~~ 256 (514)
+.+.|+|++|||||| |+||+.++++|+++ .+++.+.|++||++||+||++||+||+|||+||+.|... .+.
T Consensus 17 ~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi~ep~fs~~YA~LC~~l~~~-l~~--- 92 (234)
T 3rk6_A 17 STLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQATSIPNFSYMGARLCNYLSHH-LTI--- 92 (234)
T ss_dssp -CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSSTTCHHHHHHHHHHHHHH-CCC---
T ss_pred HHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHh-cCC---
Confidence 689999999999999 99999999999987 688999999999999999999999999999999999873 221
Q ss_pred CCCCCCCCccccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHh
Q psy10998 257 PVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELY 336 (514)
Q Consensus 257 ~v~~d~~~~~~~FR~~LL~rCQ~eFe~~~~~~~~~~~k~keie~~~d~e~kkel~~~~eE~~~~~rrR~lGnirFIGELf 336 (514)
...+..||++||++||++|++.+.+. ..| + +.|+|++|+|+||||||
T Consensus 93 ------~~~~~~Fr~lLL~rcQ~eFe~~~~~~------------~~d------------~---~~k~r~lg~i~FIgELf 139 (234)
T 3rk6_A 93 ------SPQSGNFRQLLLQRCRTEYEVKDQAA------------KGD------------E---VTRKRFHAFVLFLGELY 139 (234)
T ss_dssp ------CCTTCCHHHHHHHHHHHHHTTHHHHT------------SSC------------H---HHHHHHHHHHHHHHHHH
T ss_pred ------CCchhHHHHHHHHHHHHHHHhhHHhh------------hcc------------H---HHHHHHHHHHHHHHHHH
Confidence 01346899999999999999865210 001 0 24689999999999999
Q ss_pred hc--------ccCcHHHHHHHHHHhhc----CCCChhHHHHHHHHHHHhhhhhcC--CCCchhHHHHHHHHHHHHhhhcC
Q psy10998 337 KL--------NMLTTKIMHHCISELLK----KTEEEPLERACKLLSTIGKDLESH--DKDPTQMKGYFTTMEELASKKNS 402 (514)
Q Consensus 337 k~--------~mLt~~Im~~cI~~LL~----~~dEeslEcLc~LL~tiGk~Ld~~--~k~~~~md~~F~~L~~i~~~k~~ 402 (514)
++ +|++++|||.||.+||. +|+|++|||+|.||+|||+.||+. ++++..||.||++|+.++.+
T Consensus 140 ~~l~~~~~~~~~l~e~I~~~ci~~Ll~~l~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~~md~~f~rl~~i~~~--- 216 (234)
T 3rk6_A 140 LNLEIKGTNGQVTRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIENVVLD--- 216 (234)
T ss_dssp HHCCEECTTSSEECCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH---
T ss_pred hhhcccccccchhHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHhC---
Confidence 98 89999999999998775 599999999999999999999972 25678999999999999876
Q ss_pred CCCChHHHHHHHHHHHHH
Q psy10998 403 HAISSRVRFMLQDVIDLR 420 (514)
Q Consensus 403 ~~lssRIRFMIqdliDLR 420 (514)
..+|+||||||+||||||
T Consensus 217 ~~ls~Rirfml~dlieLR 234 (234)
T 3rk6_A 217 ANCSRDVKQMLLKLVELR 234 (234)
T ss_dssp CCCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhC
Confidence 489999999999999997
No 4
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}
Probab=100.00 E-value=1.5e-44 Score=353.50 Aligned_cols=190 Identities=21% Similarity=0.403 Sum_probs=158.8
Q ss_pred CCccchHHHHHHhhccccC--cHHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhccccCCCCCCCCCCCCccccHHHH
Q psy10998 195 LTPENFESMKMQFKEFPIN--TTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKDGKRPSVNFKNL 272 (514)
Q Consensus 195 LTp~nFd~l~~qll~l~I~--t~e~L~~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~~ev~~e~~~v~~d~~~~~~~FR~~ 272 (514)
.+-++|+..+.+++...+. +...|++||++||+||++||+||.|||+||..|...+.+. ..+..||++
T Consensus 11 ~~i~~f~~~~q~ll~~~~~~~~~~~l~~vi~lIfeKAi~ep~fs~~YA~LC~~L~~~~~~~----------~g~~~Fr~~ 80 (224)
T 2i2o_A 11 YKIQSFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQAEAKQ----------TNGSVFRRN 80 (224)
T ss_dssp CCCTTSCHHHHHHHHHHHHCGGGSCHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHH----------HSCCHHHHH
T ss_pred cchhccCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcccc----------ccchHHHHH
Confidence 3456677777776655443 3446899999999999999999999999999998764321 123459999
Q ss_pred HHHHHHHHHHhhhhhhhhhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHhhc----c--cCc-HHH
Q psy10998 273 LLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKL----N--MLT-TKI 345 (514)
Q Consensus 273 LL~rCQ~eFe~~~~~~~~~~~k~keie~~~d~e~kkel~~~~eE~~~~~rrR~lGnirFIGELfk~----~--mLt-~~I 345 (514)
||++||++|++.. |..++.|+|++|||+||||||++ + +++ ++|
T Consensus 81 LLn~cQ~eFe~~e------------------------------e~~~~~k~r~lG~i~FIgELf~~l~~~~~~~~~l~~i 130 (224)
T 2i2o_A 81 LLNRLQQEFKARE------------------------------ETRKRSTQEWVCLVSFICNIFDYLKVNNMPMVALVHP 130 (224)
T ss_dssp HHHHHHHHHHTHH------------------------------HHHHHCHHHHHHHHHHHHHHHHHSCBTTBCCGGGHHH
T ss_pred HHHHHHHHHHChH------------------------------HHHHHHHHHHhHHHHHHHHHHhHhcccCcchHHHHHH
Confidence 9999999999631 11234688999999999999999 8 466 889
Q ss_pred HHHHHHHhhcC---CCChhHHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHH-HHhhhcCCCCChHHHHHHHHHHHHHh
Q psy10998 346 MHHCISELLKK---TEEEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEE-LASKKNSHAISSRVRFMLQDVIDLRK 421 (514)
Q Consensus 346 m~~cI~~LL~~---~dEeslEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~-i~~~k~~~~lssRIRFMIqdliDLR~ 421 (514)
||.||..||.. |+|++|||||.||+|||+.||.. .+..||.||.+|+. ++++ .++|+||||||+||||||+
T Consensus 131 ~~~cl~~Ll~~~~~p~Ee~lEcl~~LL~tvG~~Ld~~--~~~~md~~f~~l~~~l~~~---~~ls~RiRfml~dlieLR~ 205 (224)
T 2i2o_A 131 VYDCLFRLAQSDALKNEEEVDCLVLQLHRIGDQLEKM--NVQLMDELFNLLRDGFLLQ---EDLSSMGRLLLLEILEFRA 205 (224)
T ss_dssp HHHHHHHHTSHHHHTSHHHHHHHHHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHHhcC---cCCCHHHHHHHHHHHHHHH
Confidence 99999999986 79999999999999999999987 34899999999999 6653 4899999999999999999
Q ss_pred CCCCCCCC
Q psy10998 422 NKWIPRRN 429 (514)
Q Consensus 422 nnW~~r~~ 429 (514)
+||++++.
T Consensus 206 ~~W~~~~~ 213 (224)
T 2i2o_A 206 GGWKLSDT 213 (224)
T ss_dssp TTSCCCHH
T ss_pred CCCCCCch
Confidence 99999864
No 5
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Probab=99.67 E-value=8.6e-16 Score=151.65 Aligned_cols=212 Identities=15% Similarity=0.300 Sum_probs=150.3
Q ss_pred HHHHHHHHh-hcCCccchHHHHHHhhccccCcHHHHHHHHHHHHHhhhcCCcchHHH--HHHHHHHHhccccCCCCCCCC
Q psy10998 184 FYKQVRGVL-NKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFY--AKMCYEMMKREVVDETKPVNK 260 (514)
Q Consensus 184 l~rkVr~iL-NKLTp~nFd~l~~qll~l~I~t~e~L~~VI~lIFeKAi~Ep~fs~~Y--A~LC~~L~~~ev~~e~~~v~~ 260 (514)
+...||.+| -.|+..+.+.++++|..+...+++....++ .+|-++. .-.|..++ |.|...|...
T Consensus 4 ~~~fir~Li~~~L~~~~~~~vlk~lrKl~W~D~e~~~~l~-k~l~~~~-~~ky~nI~~lA~ll~~L~~~----------- 70 (248)
T 1uw4_B 4 LQEYVRKLLYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVI-CCMINIW-NVKYNSIHCVANLLAGLVLY----------- 70 (248)
T ss_dssp HHHHHHHHHHTTCSTTSHHHHHHHHHTSCTTSHHHHHHHH-HHHHCGG-GSCGGGHHHHHHHHHHHTTT-----------
T ss_pred HHHHHHHHHHHHcccccHHHHHHHHHcCCCCcHHHHHHHH-HHhcchh-hcccchHHHHHHHHHHHHhh-----------
Confidence 345677777 788899999999999999988877654444 3455553 34565554 5555555432
Q ss_pred CCCCccccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHhhccc
Q psy10998 261 DGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNM 340 (514)
Q Consensus 261 d~~~~~~~FR~~LL~rCQ~eFe~~~~~~~~~~~k~keie~~~d~e~kkel~~~~eE~~~~~rrR~lGnirFIGELfk~~m 340 (514)
...|--.+++..-++.... +|.-..+.++|.+++|+||||||+.+|
T Consensus 71 -----~~~~~i~vVD~vlE~Ir~g-----------------------------LE~n~~~~nQrRia~vkyLgELYny~l 116 (248)
T 1uw4_B 71 -----QEDVGIHVVDGVLEDIRLG-----------------------------MEVNQPKFNQRRISSAKFLGELYNYRM 116 (248)
T ss_dssp -----CHHHHHHHHHHHHHHHHHH-----------------------------HHHCCGGGHHHHHHHHHHHHHHHHTTS
T ss_pred -----ChHHhhhhHHHHHHHHHHH-----------------------------HhcCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 1235555554443332211 111112455678999999999999999
Q ss_pred CcHHHHHHHHHHhhcC--C-----CChh-------HHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHHHhhh------
Q psy10998 341 LTTKIMHHCISELLKK--T-----EEEP-------LERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKK------ 400 (514)
Q Consensus 341 Lt~~Im~~cI~~LL~~--~-----dEes-------lEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k------ 400 (514)
++..+|++|+-.|+.- + ++.+ |+++|.||.|||..++.. .++..||.|+..++..+-.+
T Consensus 117 v~s~vIf~~Ly~li~fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~~-~~~kkLd~fL~ffQ~Y~~~K~~~~~~ 195 (248)
T 1uw4_B 117 VESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRG-SSKRKLDCFLVYFQRYVWWKKSLEVW 195 (248)
T ss_dssp SCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSH-HHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred CChHHHHHHHHHHHcCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHHhhccccccc
Confidence 9999999999999873 2 4555 999999999999999976 45788999999999885211
Q ss_pred -cCCCCChHHHHHHHHHHHH-HhCCCCCCCCCCCCCCHHHHHHHH
Q psy10998 401 -NSHAISSRVRFMLQDVIDL-RKNKWIPRRNENKPKTIQQIQYEA 443 (514)
Q Consensus 401 -~~~~lssRIRFMIqdliDL-R~nnW~~r~~~~~PkTI~qI~kea 443 (514)
....+|.+|+||++|++++ |.+-|..+.-+++...+++|.++.
T Consensus 196 ~k~~plP~~vef~l~D~~~~lrp~~~~~~~~eEa~~~v~~le~~~ 240 (248)
T 1uw4_B 196 TKDHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREF 240 (248)
T ss_dssp CSSSCCCHHHHHHHHHHHHHHCTTCCCCSSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhcccCcccCCHHHHHHHHHHHHHHH
Confidence 1246999999999999998 877777666566666666665544
No 6
>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*
Probab=98.74 E-value=9.9e-08 Score=107.93 Aligned_cols=191 Identities=15% Similarity=0.240 Sum_probs=145.4
Q ss_pred HHHHHHHHHHhhcCCc-------cchHHHHHHhhccccCc-HHHHHHHHHHHHHhhhcCCcchHHHHHHHHHHHhccccC
Q psy10998 182 EKFYKQVRGVLNKLTP-------ENFESMKMQFKEFPINT-TKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVD 253 (514)
Q Consensus 182 e~l~rkVr~iLNKLTp-------~nFd~l~~qll~l~I~t-~e~L~~VI~lIFeKAi~Ep~fs~~YA~LC~~L~~~ev~~ 253 (514)
+++..++++++-+|+. +++..|+..|. .+ ...-..+++.|+.-++..|.++..||-|..-|...
T Consensus 6 ~~~~~~l~~lI~rlge~~~~s~~~~l~~L~~~l~----~~l~~~r~~i~~~l~~~~~~~P~Kt~vyAaLVgllN~k---- 77 (771)
T 1h2v_C 6 NETEDHLESLICKVGEKSACSLESNLEGLAGVLE----ADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNAR---- 77 (771)
T ss_dssp ----CHHHHHHHTTTSSCSSCHHHHHHHHHHHHH----HTHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTT----
T ss_pred ccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHH----HHHHhhHHHHHHHHHHHHHhCCCcchHHHHHHHHHHcC----
Confidence 5678899999999997 34444444432 22 23334588888998999999999999998877652
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHhhhhhhHHHHHH
Q psy10998 254 ETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIG 333 (514)
Q Consensus 254 e~~~v~~d~~~~~~~FR~~LL~rCQ~eFe~~~~~~~~~~~k~keie~~~d~e~kkel~~~~eE~~~~~rrR~lGnirFIG 333 (514)
...|...++.++...|...... ...+++...++|||
T Consensus 78 ------------~pe~G~~lv~~l~~~f~~~l~~--------------------------------~~~~~~k~~lrFLa 113 (771)
T 1h2v_C 78 ------------NYNFGGEFVEAMIRQLKESLKA--------------------------------NNYNEAVYLVRFLS 113 (771)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHHHHT--------------------------------TCHHHHHHHHHHHH
T ss_pred ------------ChhHHHHHHHHHHHHHHHHHHc--------------------------------cChHHHHHHHHHHH
Confidence 1369999999999998864310 01245668999999
Q ss_pred HHhhcccCcHHHHHHHHHHhhcCCCC---------hhHHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHHHhhhcC--
Q psy10998 334 ELYKLNMLTTKIMHHCISELLKKTEE---------EPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNS-- 402 (514)
Q Consensus 334 ELfk~~mLt~~Im~~cI~~LL~~~dE---------eslEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k~~-- 402 (514)
+|...+++++..+..++..|+...+| ..+.|++..|.-||+.|-.. .+..++.+|++++.++..++.
T Consensus 114 ~L~n~~Vv~~~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~--~~~~l~~lle~~~~yl~~r~~~~ 191 (771)
T 1h2v_C 114 DLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEK--KDAEMDRIFANTESYLKRRQKTH 191 (771)
T ss_dssp HHHHTTSBCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTCCCTT
T ss_pred HhccCCeecHHHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHhcCccc
Confidence 99999999999999999999987543 46788999999999999764 467899999999998754321
Q ss_pred ------------CCCChHHHHHHHHHHHHHhCCCCC
Q psy10998 403 ------------HAISSRVRFMLQDVIDLRKNKWIP 426 (514)
Q Consensus 403 ------------~~lssRIRFMIqdliDLR~nnW~~ 426 (514)
.....++.+|+..|..+|+|+|..
T Consensus 192 ~~ll~~~~~~~~~~~~~~l~~L~~ql~~lr~~~w~~ 227 (771)
T 1h2v_C 192 VPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQE 227 (771)
T ss_dssp HHHHCSBCCCSSCCCCBHHHHHHHHHHHHHHTTTCC
T ss_pred hhhhhccccCCCCchhhHHHHHHHHHHHHHHCCCCC
Confidence 112479999999999999999974
No 7
>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B
Probab=95.62 E-value=0.25 Score=48.52 Aligned_cols=188 Identities=16% Similarity=0.159 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHhhcCCccchHHHHHHhhccccCcHHHHHHHHH-HHHHhhhcCCcchHHHHHHHHHHHhccccCCCCCCC
Q psy10998 181 DEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVID-LVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVN 259 (514)
Q Consensus 181 ~e~l~rkVr~iLNKLTp~nFd~l~~qll~l~I~t~e~L~~VI~-lIFeKAi~Ep~fs~~YA~LC~~L~~~ev~~e~~~v~ 259 (514)
++++..+|-.++|-||++|++.-++++.++- +++...=+.. +|.+.|..||+|-.+|++|+..+...
T Consensus 31 ~~~v~dki~Fi~NNls~~Nl~~k~~el~~~l--~~~y~~WFA~YLV~~Ra~~EpN~H~lY~~~l~~l~~~---------- 98 (249)
T 4b89_A 31 PKDVVEKVLFVLNNVTLANLNNKVDELKKSL--TPNYFSWFSTYLVTQRAKTEPNYHDLYSKVIVAMGSG---------- 98 (249)
T ss_dssp CHHHHHHHHHHHHHCCTTTHHHHHHHHHHHC--CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH----------
T ss_pred CHHHHhhhhhhhhcCChHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHhCCH----------
Confidence 3799999999999999999999999987642 3444444444 46778999999999999998887642
Q ss_pred CCCCCccccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHhhcc
Q psy10998 260 KDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLN 339 (514)
Q Consensus 260 ~d~~~~~~~FR~~LL~rCQ~eFe~~~~~~~~~~~k~keie~~~d~e~kkel~~~~eE~~~~~rrR~lGnirFIGELfk~~ 339 (514)
.+-+.+++.. |..... ....+ ++. +.+| ..-+.+| .++|-|=.-.
T Consensus 99 --------~L~~~vl~~T---~~~i~~--LL~~~---~i~----~~eR-------------s~LKNLG--~WLG~iTLar 143 (249)
T 4b89_A 99 --------LLHQFMVNVT---LRQLFV--LLSTK---DEQ----AIDK-------------KHLKNLA--SWLGCITLAL 143 (249)
T ss_dssp --------HHHHHHHHHH---HHHHHH--HHTBS---CGG----GSCH-------------HHHHHHH--HHHHHHTGGG
T ss_pred --------HHHHHHHHHH---HHHHHH--Hhhhc---ccC----hHHH-------------HHHHHHH--HHHhHHHHhc
Confidence 1333333322 221110 00000 011 0011 1122344 5666665432
Q ss_pred cCcHHHHHHHHHHhhcC-----CCChhHHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHHHhhhcCCCCChHHHHHHH
Q psy10998 340 MLTTKIMHHCISELLKK-----TEEEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQ 414 (514)
Q Consensus 340 mLt~~Im~~cI~~LL~~-----~dEeslEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k~~~~lssRIRFMIq 414 (514)
=-+-..-+-.++.||-. .=+.-|-.+|++|..|-..--.. ...+++-.++.-|.++... ..+-.-++|-|+
T Consensus 144 NkPI~~~~ld~K~LL~eay~~g~L~~vIPFVcKvLe~~k~SkiFk-PPNPWt~~IL~lL~Ely~~---~~LKlnlkFEIE 219 (249)
T 4b89_A 144 NKPIKHKNIAFREMLIEAYKENRLEIVVPFVTKILQRASESKIFK-PPNPWTVGILKLLIELNEK---ANWKLSLTFEVE 219 (249)
T ss_dssp TCCCCTTTBCHHHHHHHHHHHTCHHHHHHHHHHHHGGGTTCSSSS-TTCHHHHHHHHHHHHHHHH---SCCCHHHHHHHH
T ss_pred CCCchhcccCHHHHHHHHHHcCCeEEEeeHHHHHHHhcccCCccC-CCCchHHHHHHHHHHHHhC---cchhHhHHHHHH
Confidence 10000000012222211 11245667788887775332222 1248899999999998875 378889999999
Q ss_pred HHHHH
Q psy10998 415 DVIDL 419 (514)
Q Consensus 415 dliDL 419 (514)
-|...
T Consensus 220 vL~k~ 224 (249)
T 4b89_A 220 VLLKS 224 (249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98754
No 8
>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A
Probab=95.14 E-value=0.3 Score=47.42 Aligned_cols=189 Identities=14% Similarity=0.205 Sum_probs=106.3
Q ss_pred HHHHHHHHHHhhcCCccchHHHHHHhhccccCcHHHHHHHH-HHHHHhhhcCCcchHHHHHHHHHHHhccccCCCCCCCC
Q psy10998 182 EKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVI-DLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNK 260 (514)
Q Consensus 182 e~l~rkVr~iLNKLTp~nFd~l~~qll~l~I~t~e~L~~VI-~lIFeKAi~Ep~fs~~YA~LC~~L~~~ev~~e~~~v~~ 260 (514)
|++..+|-.++|-||++|+++-++++.++- +++...=++ =+|.+.|-.||+|-.+|++|...|...
T Consensus 5 e~v~dki~Fi~NNls~~N~~~k~~elk~~l--~~~y~~Wfa~YLV~~Ras~EpN~h~lY~~fl~~l~~~----------- 71 (229)
T 4gmj_A 5 ENIQEKIAFIFNNLSQSNMTQKVEELKETV--KEEFMPWVSQYLVMKRVSIEPNFHSLYSNFLDTLKNP----------- 71 (229)
T ss_dssp HHHHHHHHHHHHSCCSSTHHHHHHHHHHHS--CGGGHHHHHHHHHHHTTTTCGGGHHHHHHHHHHHTCH-----------
T ss_pred HHhhhhheeehhcCCHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHhChH-----------
Confidence 678999999999999999999999987642 233333333 356677888999999999998776431
Q ss_pred CCCCccccHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcChHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHhhccc
Q psy10998 261 DGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNM 340 (514)
Q Consensus 261 d~~~~~~~FR~~LL~rCQ~eFe~~~~~~~~~~~k~keie~~~d~e~kkel~~~~eE~~~~~rrR~lGnirFIGELfk~~m 340 (514)
.|-+.+++. .|..... .-+.++. ..++.+| ..-+.+| .++|-|=.-.=
T Consensus 72 -------~l~~~vl~~---T~~~i~~--LL~s~~~-----~~~~~eR-------------~~LKNLG--~WLG~lTLarn 119 (229)
T 4gmj_A 72 -------EFNKMVLNE---TYRNIKV--LLTSDKA-----AANFSDR-------------SLLKNLG--HWLGMITLAKN 119 (229)
T ss_dssp -------HHHHHHHHH---HHHHHHH--HHTSCCC-----TTCHHHH-------------HHHHHHH--HHHHHHTGGGT
T ss_pred -------HHHHHHHHH---HHHHHHH--HHhhccc-----ccchHHH-------------HHHHHHH--HHHHHHHHccC
Confidence 244444443 2222110 0000000 0111111 1223445 56777654321
Q ss_pred CcHHHHHHHHHHhhcCCCC-------hhHHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHHHhhhcCCCCChHHHHHH
Q psy10998 341 LTTKIMHHCISELLKKTEE-------EPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFML 413 (514)
Q Consensus 341 Lt~~Im~~cI~~LL~~~dE-------eslEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k~~~~lssRIRFMI 413 (514)
.+-..-+-.++.||-..-+ --|-.+|++|..|-+.--.. ...+++-.++.-|.++... ..+..-++|=|
T Consensus 120 kPI~~~~l~~K~LL~eay~~g~~rL~~viPFVcKvLe~~~~S~iFk-PPNPW~~~IL~lL~Ely~~---~~lKlnlkFEI 195 (229)
T 4gmj_A 120 KPILHTDLDVKSLLLEAYVKGQQELLYVVPFVAKVLESSIRSVVFR-PPNPWTMAIMNVLAELHQE---HDLKLNLKFEI 195 (229)
T ss_dssp CCCCTTTCCHHHHHHHHHHHCHHHHHHHHHHHHHHHHTTTTCTTTS-TTCHHHHHHHHHHHHHHHC---TTSCHHHHHHH
T ss_pred CCchhcccCHHHHHHHHHHCCCceEEEeehhHHHHHHhcccCCcCC-CCChhHHHHHHHHHHHHhC---ccchhhHHHHH
Confidence 1100001112333322111 13345666666654321111 1248899999999998764 36788899999
Q ss_pred HHHHHH
Q psy10998 414 QDVIDL 419 (514)
Q Consensus 414 qdliDL 419 (514)
+-+..-
T Consensus 196 EvLfk~ 201 (229)
T 4gmj_A 196 EVLCKN 201 (229)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888754
No 9
>1rf8_B Eukaryotic initiation factor 4F subunit P150; protein biosynthesis, translation regulat biosynthetic protein, translation; HET: MTN M7G; NMR {Saccharomyces cerevisiae} SCOP: a.210.1.1
Probab=94.81 E-value=0.011 Score=50.23 Aligned_cols=27 Identities=26% Similarity=0.315 Sum_probs=23.0
Q ss_pred CccccccHHHHhhccCccCCCCCCCCCCchH
Q psy10998 48 EGVKKYSRDFLLELQFEAMSKPKPANLPDLE 78 (514)
Q Consensus 48 ~gKk~Ydr~fLl~lq~~~~~~~kP~~lP~~~ 78 (514)
.||.+||+.||| ||...|..||+ +.++
T Consensus 59 ~~Kf~Ydp~FLL--QF~~v~~~kpd--~~w~ 85 (100)
T 1rf8_B 59 HVKYTYGPTFLL--QFKDKLNVKAD--AEWV 85 (100)
T ss_dssp SCSSCCCHHHHH--HHHHHHCCCCS--SHHH
T ss_pred CCccccChHHHH--HHHHHhccCCC--HHHH
Confidence 689999999996 77899999997 5553
No 10
>3hxi_C Eukaryotic translation initiation factor 4E- binding protein 1; protein-mRNA CAP complex, acetylation, phosphoprotein, protein synthesis inhibitor; HET: GTG; 1.80A {Homo sapiens} PDB: 3hxg_C*
Probab=94.39 E-value=0.012 Score=35.81 Aligned_cols=18 Identities=33% Similarity=0.562 Sum_probs=15.0
Q ss_pred ccccccHHHHhhccCccC.....
Q psy10998 49 GVKKYSRDFLLELQFEAM..... 66 (514)
Q Consensus 49 gKk~Ydr~fLl~lq~~~~..... 66 (514)
.|..|||.|||.++..|.
T Consensus 4 TrIiYdR~fLl~~rnSP~..... 21 (21)
T 3hxi_C 4 GRIIYDRKFLMECRNSPVxxxxx 26 (26)
T ss_pred eEEEEeHHHHHHhccCCC.....
Confidence 478999999998887663
No 11
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=58.70 E-value=94 Score=33.32 Aligned_cols=88 Identities=17% Similarity=0.194 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhhcCCccchHHHHHHhhcccc-CcHHHHHHHHHHHHHhhhcCCcc----hHHHHHHHHHHHhccccCCCC
Q psy10998 182 EKFYKQVRGVLNKLTPENFESMKMQFKEFPI-NTTKRLDKVIDLVFQKAIAEPSF----SEFYAKMCYEMMKREVVDETK 256 (514)
Q Consensus 182 e~l~rkVr~iLNKLTp~nFd~l~~qll~l~I-~t~e~L~~VI~lIFeKAi~Ep~f----s~~YA~LC~~L~~~ev~~e~~ 256 (514)
.-+...++.+|-.+|-+.|.-++.=|..+.+ .+......++++|.++|=-+..| .....++..++... .+-
T Consensus 176 ~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~A-LP~--- 251 (507)
T 3u0r_A 176 ELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQA-VPL--- 251 (507)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHH-GGG---
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHH-HHH---
Confidence 6678888999999999999999976666664 46777889999999998554444 46677777777664 332
Q ss_pred CCCCCCCCccccHHHHHHHH
Q psy10998 257 PVNKDGKRPSVNFKNLLLNK 276 (514)
Q Consensus 257 ~v~~d~~~~~~~FR~~LL~r 276 (514)
......++.|-.++.++
T Consensus 252 ---FS~~v~StkFv~y~~~k 268 (507)
T 3u0r_A 252 ---FSKNVHSTRFVTYFCEQ 268 (507)
T ss_dssp ---CBTTBCCHHHHHHHHHH
T ss_pred ---hccCCChHHHHHHHHHh
Confidence 11222345566666544
No 12
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=29.38 E-value=2e+02 Score=24.92 Aligned_cols=108 Identities=12% Similarity=0.040 Sum_probs=62.3
Q ss_pred hhHHHHHHHHhhcccCcHHHHHHHHHHhhcCCCChhHHHHHHH----HHHHhhhhhcCCCCchhHHHHHHHHHHHHhhhc
Q psy10998 326 VGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEPLERACKL----LSTIGKDLESHDKDPTQMKGYFTTMEELASKKN 401 (514)
Q Consensus 326 lGnirFIGELfk~~mLt~~Im~~cI~~LL~~~dEeslEcLc~L----L~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k~ 401 (514)
++.+.=|+++.+.+-...+-...+|++-|.+.+....-..+.| ++.||..+...-.++..|+. |..++.
T Consensus 23 w~~ileicD~I~~~~~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~e----l~~l~~--- 95 (140)
T 3ldz_A 23 WGLILDICDKVGQSRTGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASE----VSNVLN--- 95 (140)
T ss_dssp HHHHHHHHHHHTTSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHH----HHHHHH---
T ss_pred HHHHHHHHHHHHCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHH----HHHHhc---
Confidence 3556667888887766666666667776776665433333444 45557777643123445554 444553
Q ss_pred CCCCChHHHHHHHHHHHHHhCCCCCCCC-CCCCCCHHHHHHHHHHh
Q psy10998 402 SHAISSRVRFMLQDVIDLRKNKWIPRRN-ENKPKTIQQIQYEAESE 446 (514)
Q Consensus 402 ~~~lssRIRFMIqdliDLR~nnW~~r~~-~~~PkTI~qI~keae~e 446 (514)
+.+..++-.|..+|.- |..... +..-.-|.+.+++...+
T Consensus 96 --~~~~~Vk~kil~li~~----W~~~f~~~~~l~~i~~~Y~~Lk~~ 135 (140)
T 3ldz_A 96 --KGHPKVCEKLKALMVE----WTDEFKNDPQLSLISAMIKNLKEQ 135 (140)
T ss_dssp --HSCHHHHHHHHHHHHH----HHHHHTTCGGGTHHHHHHHHHHHT
T ss_pred --cCCHHHHHHHHHHHHH----HHHHhCCCCCchHHHHHHHHHHHc
Confidence 2467888888888874 443221 11223477777776543
No 13
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=29.37 E-value=2.1e+02 Score=25.81 Aligned_cols=111 Identities=9% Similarity=0.072 Sum_probs=67.3
Q ss_pred hhHHHHHHHHhhcccCcHHHHHHHHHHhhcCCCChh----HHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHHHhhhc
Q psy10998 326 VGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEP----LERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKN 401 (514)
Q Consensus 326 lGnirFIGELfk~~mLt~~Im~~cI~~LL~~~dEes----lEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k~ 401 (514)
++.+.-|+++.+.+-...+....+|++-|.+.+... |..|=.+++.||+.+..+-.+ ..+++.|..++..+.
T Consensus 31 w~~ileicD~I~~~~~~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas----~~Fl~eL~kl~~~k~ 106 (171)
T 1juq_A 31 WEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGK----FRFLNELIKVVSPKY 106 (171)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTS----HHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhh----HHHHHHHHHHhcccc
Confidence 356667777777776666666666777777766543 444444556678777654122 344445566664321
Q ss_pred -CCCCChHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHh
Q psy10998 402 -SHAISSRVRFMLQDVIDLRKNKWIPRRNENKPKTIQQIQYEAESE 446 (514)
Q Consensus 402 -~~~lssRIRFMIqdliDLR~nnW~~r~~~~~PkTI~qI~keae~e 446 (514)
....+..||-.|..+|.--..... ..|+ |.+.+++...+
T Consensus 107 ~~~~~~~~Vk~kil~li~~W~~~f~-----~~~~-i~~~y~~Lk~~ 146 (171)
T 1juq_A 107 LGDRVSEKVKTKVIELLYSWTMALP-----EEAK-IKDAYHMLKRQ 146 (171)
T ss_dssp CCTTSCHHHHHHHHHHHHHHHHHCT-----TCHH-HHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcC-----CCcH-HHHHHHHHHHC
Confidence 135788999999999987553322 1353 66776666543
No 14
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=27.69 E-value=2.4e+02 Score=25.19 Aligned_cols=105 Identities=10% Similarity=-0.016 Sum_probs=59.7
Q ss_pred hHHHHHHHHhhcccCcHHHHHHHHHHhhcCCCChh----HHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHHHhhhcC
Q psy10998 327 GNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEP----LERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNS 402 (514)
Q Consensus 327 GnirFIGELfk~~mLt~~Im~~cI~~LL~~~dEes----lEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k~~ 402 (514)
+.+.-|+++.+.+-...+....+|++-|.+.+... |..|=.+++.||..+..+-..+..|+ .|..++..
T Consensus 34 ~~~leicD~I~~~~~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~----el~~l~~~--- 106 (163)
T 1x5b_A 34 SLIMDICDKVGSTPNGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFAT----EVRAVIKN--- 106 (163)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHH----HHHHHHHT---
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHH----HHHHHHcc---
Confidence 44555667777666666666666776677666543 33444445566777764412234444 44555542
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCCCCCCC--CCHHHHHHHHH
Q psy10998 403 HAISSRVRFMLQDVIDLRKNKWIPRRNENKP--KTIQQIQYEAE 444 (514)
Q Consensus 403 ~~lssRIRFMIqdliDLR~nnW~~r~~~~~P--kTI~qI~keae 444 (514)
+....|+-.|..+|..-..... ..| .-|.+.+++..
T Consensus 107 -~~~~~Vk~kil~li~~W~~~f~-----~~~~l~~i~~~Y~~Lk 144 (163)
T 1x5b_A 107 -KAHPKVCEKLKSLMVEWSEEFQ-----KDPQFSLISATIKSMK 144 (163)
T ss_dssp -TCCHHHHHHHHHHHHHHHHHTT-----TCSTTHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHhc-----CCcccHHHHHHHHHHH
Confidence 4567888888888876443222 123 23566666654
No 15
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.19 E-value=2.7e+02 Score=26.09 Aligned_cols=109 Identities=16% Similarity=0.172 Sum_probs=63.7
Q ss_pred hHHHHHHHHhhcccCcHHHHHHHHHHhhcCCCChh----HHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHHHhhhcC
Q psy10998 327 GNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEP----LERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNS 402 (514)
Q Consensus 327 GnirFIGELfk~~mLt~~Im~~cI~~LL~~~dEes----lEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k~~ 402 (514)
+.+.-|.++.+.+-...+....+|.+-|.+.++.. |..|=.+++.+|..+..+-.++..| +.|.+++..
T Consensus 27 ~~ileicD~I~~~~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl----~~l~~l~~~--- 99 (226)
T 3zyq_A 27 ESILQICDLIRQGDTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTM----EELKDLLKR--- 99 (226)
T ss_dssp HHHHHHHHHHHTTSSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHH----HHHHHHHHH---
T ss_pred HHHHHHHHHHhCCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHH----HHHHHHhcc---
Confidence 45555777777766666665566666666666543 3444445566688776541223334 445555543
Q ss_pred CCCChHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHh
Q psy10998 403 HAISSRVRFMLQDVIDLRKNKWIPRRNENKPKTIQQIQYEAESE 446 (514)
Q Consensus 403 ~~lssRIRFMIqdliDLR~nnW~~r~~~~~PkTI~qI~keae~e 446 (514)
..+..|+-.|..||..-...... +..=+-|.+++++...+
T Consensus 100 -~~~~~Vk~kil~li~~W~~~f~~---~~~l~~i~~~Y~~Lk~~ 139 (226)
T 3zyq_A 100 -QVEVNVRNKILYLIQAWAHAFRN---EPKYKVVQDTYQIMKVE 139 (226)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHTTT---CGGGHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHHHHHhCC---CcchHHHHHHHHHHHhc
Confidence 56788888888888765532221 11112477777777654
No 16
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=21.08 E-value=3e+02 Score=26.54 Aligned_cols=69 Identities=10% Similarity=0.105 Sum_probs=41.2
Q ss_pred HHHHHHHHhhcccCcHHHHHHHHHHhhcCCCCh----hHHHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHH
Q psy10998 328 NCRFIGELYKLNMLTTKIMHHCISELLKKTEEE----PLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEEL 396 (514)
Q Consensus 328 nirFIGELfk~~mLt~~Im~~cI~~LL~~~dEe----slEcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i 396 (514)
.+.||+|.|+.+.--..-+..++..||.+.+.. .|.|++.+...+=..+-..+.....+.+.++.|..+
T Consensus 73 ~~~Fi~e~~~~k~~l~~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~l 145 (257)
T 3gs3_A 73 VVAFVEQVCKVKVELLPHVINVVSMLLRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLI 145 (257)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHH
Confidence 457999999887654455566777888765543 445666665555555544422223455566665554
No 17
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=20.80 E-value=3.9e+02 Score=23.51 Aligned_cols=111 Identities=9% Similarity=0.058 Sum_probs=67.0
Q ss_pred hhHHHHHHHHhhcccCcHHHHHHHHHHhhcCCCChhH----HHHHHHHHHHhhhhhcCCCCchhHHHHHHHHHHHHhhhc
Q psy10998 326 VGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEPL----ERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKN 401 (514)
Q Consensus 326 lGnirFIGELfk~~mLt~~Im~~cI~~LL~~~dEesl----EcLc~LL~tiGk~Ld~~~k~~~~md~~F~~L~~i~~~k~ 401 (514)
++.+.-|+++.+.+-...+....+|.+-|.+.++... ..|=.+++.||..+..+=.+ ..+++.|.+++..+-
T Consensus 29 w~~ileicD~I~~~~~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias----~~Fl~eL~kl~~~k~ 104 (149)
T 3g2s_A 29 WASINGFCEQLNEDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGK----FRFLNELIKVVSPKY 104 (149)
T ss_dssp HHHHHHHHHHGGGSSSHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTS----HHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHCCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhh----HHHHHHHHHHHcccc
Confidence 4666778888888777777666677776777666443 34444455667777654112 334444566664320
Q ss_pred -CCCCChHHHHHHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHHHHh
Q psy10998 402 -SHAISSRVRFMLQDVIDLRKNKWIPRRNENKPKTIQQIQYEAESE 446 (514)
Q Consensus 402 -~~~lssRIRFMIqdliDLR~nnW~~r~~~~~PkTI~qI~keae~e 446 (514)
....+..++-.|..+|.--..... ..|+ |.+..++..++
T Consensus 105 ~~~~~~~~Vk~kil~li~~W~~~f~-----~~p~-i~~~Y~~Lk~~ 144 (149)
T 3g2s_A 105 LGSRTSEKVKNKILELLYSWTVGLP-----EEVK-IAEAYQMLKKQ 144 (149)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHCT-----TCHH-HHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhC-----CCch-HHHHHHHHHHC
Confidence 024688999999999987554331 2354 66666665543
Done!