RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10998
(514 letters)
>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP:
a.118.1.14
Length = 260
Score = 228 bits (583), Expect = 5e-72
Identities = 124/265 (46%), Positives = 171/265 (64%), Gaps = 10/265 (3%)
Query: 179 DEDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEF 238
+ ++ +++VR +LNKLTP+ F + Q ++T +RL VIDLVF+KAI EPSFS
Sbjct: 6 IKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVA 65
Query: 239 YAKMCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEI 298
YA MC ++ +V KP N VNF+ LLLN+CQKEFEK++ ++ + K E+
Sbjct: 66 YANMCRCLVTLKVPMADKPGNT------VNFRKLLLNRCQKEFEKDKADDDVFEKKQKEL 119
Query: 299 EAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTE 358
EA PE++ L EE + R+RS+GN +FIGEL+KL MLT IMH C+ +LLK +
Sbjct: 120 EAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHD 179
Query: 359 EEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVID 418
EE LE C+LL+TIGKDL+ +K +M YF ME++ ++ SSR+RFMLQDVID
Sbjct: 180 EESLECLCRLLTTIGKDLD-FEKAKPRMDQYFNQMEKIVKERK---TSSRIRFMLQDVID 235
Query: 419 LRKNKWIPRRNENKPKTIQQIQYEA 443
LR W+ RR + PKTI+QI EA
Sbjct: 236 LRLCNWVSRRADQGPKTIEQIHKEA 260
>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation,
ATP-binding, phosphoprotein, protein biosynthesis,
translation regulation; HET: AMP; 2.6A {Saccharomyces
cerevisiae} PDB: 2vsx_E*
Length = 284
Score = 190 bits (482), Expect = 9e-57
Identities = 74/291 (25%), Positives = 126/291 (43%), Gaps = 44/291 (15%)
Query: 165 LRESENAWRP---------------NNNCDEDEKFYKQVRGVLNKLTPENFESMKMQFKE 209
L S N W P + ++ ++++ +LNKLT E F+++ +
Sbjct: 2 LVPSANRWVPKFKSKKTEKKLAPDGKTELLDKDEVERKMKSLLNKLTLEMFDAISSEILA 61
Query: 210 FP-----INTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKDGKR 264
+ L VI+ +F KA EP +S YA++C +++K D T +GK
Sbjct: 62 IANISVWETNGETLKAVIEQIFLKACDEPHWSSMYAQLCGKVVKELNPDITDE-TNEGKT 120
Query: 265 PSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKR 324
+ L+ +C EF+K ++ + +E E E ++R
Sbjct: 121 GPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMSE--------EYYAAASAKRR 172
Query: 325 SVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEP----LERACKLLSTIGKDLESHD 380
+G RFIG LY+LN+LT K+M C L+K + P LE +LL+T+G+ E+
Sbjct: 173 GLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDS 232
Query: 381 KDPTQ--------MKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRKNK 423
Q + F ++ + ISSR++F L D+ +LR +K
Sbjct: 233 FRTGQATLEGSQLLDSLFGILDNIIQTAK---ISSRIKFKLIDIKELRHDK 280
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP,
EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Length = 234
Score = 153 bits (388), Expect = 9e-44
Identities = 59/266 (22%), Positives = 100/266 (37%), Gaps = 59/266 (22%)
Query: 174 PNNNCDEDEKFYKQVRGVLNKLT--PENFESMKMQFKEF---PINTTKRLDKVIDLVFQK 228
+ V+ LN LT P +FE+ QF E + T L ++++L++Q+
Sbjct: 9 GGQQMGRGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQ 68
Query: 229 AIAEPSFSEFYAKMCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEE 288
A + P+FS A++C + + NF+ LLL +C+ E+E +
Sbjct: 69 ATSIPNFSYMGARLCNYLSHHLTISPQS----------GNFRQLLLQRCRTEYEVKD--- 115
Query: 289 RKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELY--------KLNM 340
+ + + RKR F+GELY +
Sbjct: 116 ------------------------QAAKGDEVTRKRFHAFVLFLGELYLNLEIKGTNGQV 151
Query: 341 LTTKIMHHCISELLKKTE----EEPLERACKLLSTIGKDLESHDKDPTQ--MKGYFTTME 394
I+ + ELL ++ L A KLL G LE K+ + M+ +E
Sbjct: 152 TRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKMDMEEIIQRIE 211
Query: 395 ELASKKNSHAISSRVRFMLQDVIDLR 420
+ N S V+ ML +++LR
Sbjct: 212 NVVLDAN---CSRDVKQMLLKLVELR 234
>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente
eukaryotic structural genomics, CESG, structural
genomics, function; HET: MSE; 1.92A {Danio rerio}
Length = 224
Score = 151 bits (382), Expect = 6e-43
Identities = 38/253 (15%), Positives = 84/253 (33%), Gaps = 56/253 (22%)
Query: 192 LNKLTPENFESMKMQFKEFPI--NTTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKR 249
++F+ + + + + L+KV ++ +++ + FS ++CY +++
Sbjct: 8 KEDYKIQSFDLETQKLLKTALKDPGSVDLEKVSSVIVDQSLKDQVFSREAGRICYTIVQA 67
Query: 250 EVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKE 309
E F+ LLN+ Q+EF+ E +++
Sbjct: 68 EAKQTN----------GSVFRRNLLNRLQQEFKAREETRKRS------------------ 99
Query: 310 LRLMFEEEERLIRKRSVGNCRFIGELYKLNMLT-------TKIMHHCISELLKKTE---E 359
+ V FI ++ + ++ C+ L + E
Sbjct: 100 ------------TQEWVCLVSFICNIFDYLKVNNMPMVALVHPVYDCLFRLAQSDALKNE 147
Query: 360 EPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDL 419
E ++ L IG LE + M F + + + +SS R +L ++++
Sbjct: 148 EEVDCLVLQLHRIGDQLEKMNVQ--LMDELFNLLRDGFLLQED--LSSMGRLLLLEILEF 203
Query: 420 RKNKWIPRRNENK 432
R W K
Sbjct: 204 RAGGWKLSDTAQK 216
>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA
decay protein, RNA-binding protein, N domain, MIF4G
domain; 1.95A {Homo sapiens} SCOP: a.118.1.14
Length = 248
Score = 66.2 bits (161), Expect = 2e-12
Identities = 28/165 (16%), Positives = 58/165 (35%), Gaps = 22/165 (13%)
Query: 309 ELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEP------- 361
++RL E + +R + + +F+GELY M+ + ++ +
Sbjct: 85 DIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPDGSPSSLD 144
Query: 362 -------LERACKLLSTIGKDLESHDKDP------TQMKGYFTTMEELASKKNSHAISSR 408
+ C +L T G+ + + Y + L H
Sbjct: 145 PPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTKDHPFPID 204
Query: 409 VRFMLQDVIDLRKNKWIPRRN-ENKPKTIQQIQYEAESEKFGNVN 452
+ +M+ D ++L + K + E + +Q ++ E K G VN
Sbjct: 205 IDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREF-LIKLGLVN 248
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.3 bits (140), Expect = 4e-09
Identities = 70/489 (14%), Positives = 141/489 (28%), Gaps = 162/489 (33%)
Query: 11 TVL-------PKLKHNYQEGVYTISLANYSA-----------YHEFKYQWS--------- 43
T + K++ ++ ++L N ++ ++ W+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 44 PINQEGVKKYSRDFLLELQFEAMSKPKPANLPDLEIVLKDLSKPSYPNKNSNISHNIMPH 103
+ ++ R L SKP L +VL ++ N+ N
Sbjct: 224 KLRIHSIQAELRRLL-------KSKPYENCL----LVLLNVQ-------NAKAW-NAFNL 264
Query: 104 G------SRNNDILFPHYANKPGNMRQNIRQQ--------QPVLKARSIQGGKVPKPAPK 149
+R + A ++ + +LK + +P+
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324
Query: 150 -SPNIVLSI---SLKDDIKLRESENAWRPNNNCDEDEKFYKQVRGVLNKLTPENFESMKM 205
+P LSI S++D + +N W+ + NCD K + LN L P + M
Sbjct: 325 TNP-RRLSIIAESIRDGLAT--WDN-WK-HVNCD---KLTTIIESSLNVLEPAEYRKM-- 374
Query: 206 QFKEFPINTTKRLDKVIDLVFQKA--IAEPSFSEFYAKMCYEMMKREVVDETKP---VNK 260
F + F + I S + + + VV++ V K
Sbjct: 375 -FDRLSV-------------FPPSAHIPTILLSLIWFDVIKSDV-MVVVNKLHKYSLVEK 419
Query: 261 DGKRPSVNFKNLLLNKCQKEFEKNEFEER------------KNDIKLDEI---------- 298
K +++ ++ L K + +D+ +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 299 ---EAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLK 355
E E+ R++F L + RF+ + KI H
Sbjct: 480 HLKNIEHP-ERMTLFRMVF-----L-------DFRFLEQ---------KIRHDST----- 512
Query: 356 KTEEEPLERACKLLSTIGKDLESH-----DKDPTQMKGYFTTMEELASKKNSHAISSR-- 408
+ +L+T+ L+ + D DP + + + K + I S+
Sbjct: 513 -----AWNASGSILNTLQ-QLKFYKPYICDNDPK-YERLVNAILDFLPKIEENLICSKYT 565
Query: 409 --VRFMLQD 415
+R L
Sbjct: 566 DLLRIALMA 574
Score = 54.1 bits (129), Expect = 1e-07
Identities = 69/520 (13%), Positives = 152/520 (29%), Gaps = 115/520 (22%)
Query: 49 GVKKYS-RDFLLELQFEAMSKPKPANLPDLEIV-LKDLSKPSYPNKNSNISHNI-MPHGS 105
G +Y +D L + A + + + ++D+ K I H I
Sbjct: 12 GEHQYQYKDILSVFE--------DAFVDNFDCKDVQDMPKSIL--SKEEIDHIIMSKDAV 61
Query: 106 RNNDILFPHYANKPGNMRQN-----IRQQQPVLKARSIQGGKVPKPAPKSPNIVLSISLK 160
LF +K M Q +R L + I+ + S + I +
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP-IK----TEQRQPSMMTRMYIEQR 116
Query: 161 D----DIKLRESENAWRPNNNCDEDEKFYKQVRGVLNKLTPENF---ESMKMQFKEFPIN 213
D D ++ N R + Y ++R L +L P + + K
Sbjct: 117 DRLYNDNQVFAKYNVSRL--------QPYLKLRQALLELRPAKNVLIDGVLGSGK----- 163
Query: 214 TTKRLDKVIDLVFQKAIAEPSFSEFYAKMCYEMMKREVVDETKPVNKDGKRPSVNFKNLL 273
T LD + Q F F+ + V+ + + K + N+ +
Sbjct: 164 TWVALDVCLSYKVQCK---MDFKIFWLNLKNCNSPETVL---EMLQKLLYQIDPNWTSRS 217
Query: 274 LNKCQKEFEKNEFEERKND-----------IKLDEIEAEQDPEKKKELRLMFEEEERLI- 321
+ + + + + L + Q+ + F +++
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV---QNAKAWN----AFNLSCKILL 270
Query: 322 --RKRSVGN-------CRFIGELYKLNMLTTKIMHHCISELLKKTEEEPLERACK----L 368
R + V + + + + + ++ + L + ++ P E
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE-VLTTNPRR 329
Query: 369 LSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRV--------RFMLQDVIDLR 420
LS I + + +D + + + K + I S + R M +
Sbjct: 330 LSIIAESI----RDGLATWDNW---KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 421 KNKWIPRR------NENKPKTIQQIQYEAESEKFGNVNKKPLLDKPYSLEKPMLDNDRKS 474
+ IP + + + + K+ V K+P K ++ P + +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVV--VNKLHKYSLVEKQP---KESTISIPSIYLE--- 434
Query: 475 AFQQQQKDWNKPNNPI---YKASYQFDKTKFVSIRVSNAF 511
+ + ++ + I Y FD + + F
Sbjct: 435 -LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473
Score = 43.3 bits (101), Expect = 2e-04
Identities = 22/155 (14%), Positives = 49/155 (31%), Gaps = 32/155 (20%)
Query: 343 TKIMHHCISELLKKTEEEPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNS 402
T + ++L E+ + + D K + EE+ S
Sbjct: 11 TGEHQYQYKDILSVFEDA-----------FVDNFDCKDV-QDMPKSILSK-EEIDHIIMS 57
Query: 403 HAISSRVRFML-----------QDVID--LRKN-KWI--PRRNENKPKTIQQIQYEAESE 446
S + Q ++ LR N K++ P + E + ++ Y + +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 447 KFGNVNKKPLLDKPYSLEKPMLDNDRKSAFQQQQK 481
+ N N + K Y++ + + A + +
Sbjct: 118 RLYNDN--QVFAK-YNVSRLQPYLKLRQALLELRP 149
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 2e-04
Identities = 43/281 (15%), Positives = 71/281 (25%), Gaps = 117/281 (41%)
Query: 226 FQKAIAEP-----------SFSEFYAK-MCYEMMKREVVDETKPVNKDGKRPSVNFKNLL 273
F K + EP + +E K + Y V +P +K G+ V L
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGY------VSSLVEP-SKVGQFDQV-LNLCL 88
Query: 274 LNKCQKEFEKNEFEE---RKNDI-----KLDEIEAEQDPEKKKELRLMFE---------- 315
EFE NDI KL + + K+ ++
Sbjct: 89 ----------TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFD 138
Query: 316 --EEERLIRKRSVGNCRFI----G----ELYKLNMLTTKIMHHCISEL--LKKTEEEPLE 363
L R GN + + G + Y EL L +T +
Sbjct: 139 KKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-------------FEELRDLYQTYHVLVG 185
Query: 364 RACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDLRKNK 423
L+ + L + + FT +++ +
Sbjct: 186 D---LIKFSAETLSELIRTTLDAEKVFT-----------------------QGLNIL--E 217
Query: 424 WIPRRNENKPKT---------------IQQIQYEAESEKFG 449
W+ N P IQ Y ++ G
Sbjct: 218 WL-ENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold,
ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Length = 997
Score = 33.6 bits (77), Expect = 0.16
Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 18/186 (9%)
Query: 155 LSISLKDDIKLRESENAWRPNNNCDEDE---KFYKQVRGVLNKLTPENFESMKMQFKEFP 211
L D + + + +E+ +R L + E E K +
Sbjct: 597 LEKEGFDRYEWKVELFIKKMVAGKEEEARALAQELGIREELLERIREIREECKQDEERVR 656
Query: 212 -------INTTKRLDKVIDLVFQKAIA---EPSFSEFYAKMCYEMMKREVVDETKPV--- 258
I T + + ID + +P S FY ++M+ D +
Sbjct: 657 ALGGLFIIGTERHESRRIDNQLRGRAGRQGDPGGSRFYVSFDDDLMRLFASDRVIAMLDR 716
Query: 259 --NKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQDPEKKKELRLMFEE 316
D + + + QK E F RK ++ D++ + Q + RL+
Sbjct: 717 MGFDDSEPIEHPMVTRSIERAQKRVEDRNFAIRKQLLQFDDVLSRQREVIYAQRRLILLG 776
Query: 317 EERLIR 322
++ ++
Sbjct: 777 KDEEVK 782
>1w6k_A Lanosterol synthase; cyclase, cholesterol, monotopic membrane
protein, B-octyl-glucoside, isomerase, steroid
biosynthesis; HET: BOG LAN; 2.1A {Homo sapiens} SCOP:
a.102.4.2 a.102.4.2 PDB: 1w6j_A*
Length = 732
Score = 30.2 bits (67), Expect = 1.9
Identities = 11/74 (14%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 41 QWSPINQEGVKKYSRDFLLELQFEAMSKPKPANLPDLEIVLKDLSKPSYPNKNSNISHNI 100
W+P + + + R L + + + A P ++ + ++L Y ++I
Sbjct: 220 DWAPAHPSTLWCHCRQVYLPMSYCYAVRLSAAEDPLVQSLRQEL----YVEDFASIDWLA 275
Query: 101 MPHGSRNNDILFPH 114
+ +++ PH
Sbjct: 276 QRNNVAPDELYTPH 289
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 2.0
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 287 EERKNDI-KLDEIEAEQDPE----KKKELRLMFEEEERLIRKRSVGN 328
EE++ + +LD + E KK+L + + + K + N
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINN 138
Score = 28.6 bits (63), Expect = 3.5
Identities = 6/26 (23%), Positives = 14/26 (53%), Gaps = 3/26 (11%)
Query: 299 EAEQDPEKKKELRLMFEEEERLIRKR 324
Q+PE ++ R EE+ + +++
Sbjct: 79 RLTQEPESIRKWR---EEQRKRLQEL 101
>1t1v_A SH3BGRL3, SH3 domain-binding glutamic acid-rich protein-LIK;
glutaredoxin, thioredoxin fold, protein 3D-structure,
X-RAY crystallography; 1.60A {Mus musculus} SCOP:
c.47.1.14 PDB: 1j0f_A 1sj6_A
Length = 93
Score = 27.1 bits (60), Expect = 5.3
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 6/48 (12%)
Query: 289 RKNDIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELY 336
I+ ++ QD + E+R ++ G Y
Sbjct: 29 DGKRIQYQLVDISQDNALRDEMR------TLAGNPKATPPQIVNGNHY 70
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 5.8
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 11/36 (30%)
Query: 123 RQNIRQQQPVLKARSIQGGKVPKPAPKSPNIVLSIS 158
+Q +++ Q LK + AP L+I
Sbjct: 19 KQALKKLQASLKLYA------DDSAP-----ALAIK 43
>1vff_A Beta-glucosidase; glycosyl hydrolase, membrane-bound enzyme,
thermostability, TIM barrel, alkylglucosides; 2.50A
{Pyrococcus horikoshii} SCOP: c.1.8.4
Length = 423
Score = 27.9 bits (63), Expect = 9.8
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 10/52 (19%)
Query: 18 HNYQEGVYTISLANYSAYHEFKYQWS-------PINQEGVKKYSR--DFLLE 60
Y++ + ++ Y+AY F +WS N++ KY D LL
Sbjct: 50 ELYRDDIQLMTSLGYNAYR-FSIEWSRLFPEENKFNEDAFMKYREIIDLLLT 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.131 0.377
Gapped
Lambda K H
0.267 0.0439 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,560,136
Number of extensions: 444495
Number of successful extensions: 737
Number of sequences better than 10.0: 1
Number of HSP's gapped: 711
Number of HSP's successfully gapped: 35
Length of query: 514
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 416
Effective length of database: 3,965,535
Effective search space: 1649662560
Effective search space used: 1649662560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.2 bits)