RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10998
         (514 letters)



>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 243

 Score =  190 bits (483), Expect = 7e-58
 Identities = 110/246 (44%), Positives = 155/246 (63%), Gaps = 10/246 (4%)

Query: 180 EDEKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFY 239
           + ++ +++VR +LNKLTP+ F  +  Q     ++T +RL  VIDLVF+KAI EPSFS  Y
Sbjct: 7   KTQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAY 66

Query: 240 AKMCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIE 299
           A MC  ++  +          D    +VNF+ LLLN+CQKEFEK++ ++   + K  E+E
Sbjct: 67  ANMCRCLVTLK------VPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELE 120

Query: 300 AEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEE 359
           A   PE++  L    EE +   R+RS+GN +FIGEL+KL MLT  IMH C+ +LLK  +E
Sbjct: 121 AASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE 180

Query: 360 EPLERACKLLSTIGKDLESHDKDPTQMKGYFTTMEELASKKNSHAISSRVRFMLQDVIDL 419
           E LE  C+LL+TIGKDL+       +M  YF  ME++  ++     SSR+RFMLQDVIDL
Sbjct: 181 ESLECLCRLLTTIGKDLDFEKA-KPRMDQYFNQMEKIVKERK---TSSRIRFMLQDVIDL 236

Query: 420 RKNKWI 425
           R   W+
Sbjct: 237 RLCNWV 242


>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 248

 Score =  129 bits (325), Expect = 7e-35
 Identities = 33/292 (11%), Positives = 86/292 (29%), Gaps = 69/292 (23%)

Query: 182 EKFYKQVRGVLNKLTPENFESMKMQFKEFPINTTKRLDKVIDLVFQKAIAEPSFSEFYAK 241
           +++ +++  +   L+    E +  Q ++ P    +  D VI  +      + +     A 
Sbjct: 5   QEYVRKL--LYKDLSKVTTEKVLRQMRKLPWQDQEVKDYVICCMINIWNVKYNSIHCVAN 62

Query: 242 MCYEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAE 301
           +   ++                +   +    +++   ++        +            
Sbjct: 63  LLAGLVL--------------YQE--DVGIHVVDGVLEDIRLGMEVNQPKF--------- 97

Query: 302 QDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEEP 361
                                +R + + +F+GELY   M+ + ++   +           
Sbjct: 98  --------------------NQRRISSAKFLGELYNYRMVESAVIFRTLYSFTSFGVNPD 137

Query: 362 --------------LERACKLLSTIGKDLESHDKDP------TQMKGYFTTMEELASKKN 401
                         +   C +L T G+  +               + Y    + L     
Sbjct: 138 GSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKLDCFLVYFQRYVWWKKSLEVWTK 197

Query: 402 SHAISSRVRFMLQDVIDLRKNKWIPRRN-ENKPKTIQQIQYEAESEKFGNVN 452
            H     + +M+ D ++L + K     + E   + +Q ++ E    K G VN
Sbjct: 198 DHPFPIDIDYMISDTLELLRPKIKLCNSLEESIRQVQDLEREFLI-KLGLVN 248


>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding
           protein {Human (Homo sapiens) [TaxId: 9606]}
          Length = 262

 Score = 44.9 bits (106), Expect = 9e-06
 Identities = 32/269 (11%), Positives = 74/269 (27%), Gaps = 77/269 (28%)

Query: 188 VRGVLNKLTPENFESMKMQFKE----FPINTTKRLDKVIDLVFQKAIAEPSFSEFYAKMC 243
           +  ++ K+  ++  S++   +        +      K++ L+   A   P     Y  + 
Sbjct: 3   LESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLV 62

Query: 244 YEMMKREVVDETKPVNKDGKRPSVNFKNLLLNKCQKEFEKNEFEERKNDIKLDEIEAEQD 303
                  +++              NF    +    ++ ++           L        
Sbjct: 63  G------LLNARNY----------NFGGEFVEAMIRQLKE----------SLKA------ 90

Query: 304 PEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLNMLTTKIMHHCISELLKKTEEE--P 361
                E   +                RF+ +L   +++    M       +  T+EE  P
Sbjct: 91  -NNYNEAVYLV---------------RFLSDLVNCHVIAAPSMVAMFENFVSVTQEEDVP 134

Query: 362 LERACKLLSTIGKDL-----ESHDKDPTQMKGYFTTMEELASKKNS-------------- 402
             R    +      L     E ++K   +M   F   E    ++                
Sbjct: 135 QVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKP 194

Query: 403 HAISSRVRFMLQDVIDLRKNKW----IPR 427
           H     +  +   +  L+K++W    I R
Sbjct: 195 HPQEEYLDCLWAQIQKLKKDRWQERHILR 223


>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
           permease {Salmonella typhimurium [TaxId: 90371]}
          Length = 258

 Score = 27.1 bits (60), Expect = 5.1
 Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 6/97 (6%)

Query: 292 DIKLDEIEAEQDPEKKKELRLMFEEEERLIRKRSVGNCRFIGELYKLN--MLTTKIMHHC 349
            I ++        +K  +L++  + + RL+R R +     + + + L   M   + +   
Sbjct: 58  AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR-LT---MVFQHFNLWSHMTVLENVMEA 113

Query: 350 ISELLKKTEEEPLERACKLLSTIGKDLESHDKDPTQM 386
             ++L  ++ +  ERA K L+ +G D  +  K P  +
Sbjct: 114 PIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 150


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,890,062
Number of extensions: 92540
Number of successful extensions: 222
Number of sequences better than 10.0: 1
Number of HSP's gapped: 215
Number of HSP's successfully gapped: 22
Length of query: 514
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 425
Effective length of database: 1,185,626
Effective search space: 503891050
Effective search space used: 503891050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.4 bits)