BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10999
(447 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EA0|A Chain A, Alpha Subunit Of A. Brasilense Glutamate Synthase
pdb|1EA0|B Chain B, Alpha Subunit Of A. Brasilense Glutamate Synthase
Length = 1479
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/375 (50%), Positives = 240/375 (64%), Gaps = 27/375 (7%)
Query: 25 FQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATG 84
Q+A +N++ + ++ E + LR L+ + PV + EVE I KRF T
Sbjct: 798 LQQAVTNDSYTTFKKYSE-QVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKRFITP 856
Query: 85 AMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGD-ENQRSAIKQGKLYPKT 143
MS G++S EAH TL AMN+IGAKS++GEGGE+P R+ + +N SAIKQ
Sbjct: 857 GMSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGDNWNSAIKQ------- 909
Query: 144 YCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTK 203
VASGRFGVT+ YL +L+IK+AQGAKPGEGG+LPG+KVT+
Sbjct: 910 ------------------VASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTE 951
Query: 204 DIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARIXXXXXXXXXXXXXXX 263
IA RHS PGV LISPPPHHDIYSIEDLA+LIYDLK NP+A++
Sbjct: 952 MIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAA 1011
Query: 264 XXXXXXXEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADG 323
+ I+ISG+ GGTGAS T IK AGLPWE+G++E HQVL LN LR RV L+ DG
Sbjct: 1012 GVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDG 1071
Query: 324 QIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGK 383
++TG D+V+AA+LGA+E G+ TA LI MGC M+R+CH NTCPVG+ QD +LR+KF G
Sbjct: 1072 GLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGT 1131
Query: 384 PEHVINYLFMLAEEV 398
PE V+N LAEEV
Sbjct: 1132 PEKVVNLFTFLAEEV 1146
>pdb|2VDC|A Chain A, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|B Chain B, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|C Chain C, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|D Chain D, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|E Chain E, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications.
pdb|2VDC|F Chain F, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization Behavior
In Solution: Functional Implications
Length = 1472
Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/375 (50%), Positives = 240/375 (64%), Gaps = 27/375 (7%)
Query: 25 FQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATG 84
Q+A +N++ + ++ E + LR L+ + PV + EVE I KRF T
Sbjct: 798 LQQAVTNDSYTTFKKYSE-QVNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKRFITP 856
Query: 85 AMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGD-ENQRSAIKQGKLYPKT 143
MS G++S EAH TL AMN+IGAKS++GEGGE+P R+ + +N SAIKQ
Sbjct: 857 GMSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGDNWNSAIKQ------- 909
Query: 144 YCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTK 203
VASGRFGVT+ YL +L+IK+AQGAKPGEGG+LPG+KVT+
Sbjct: 910 ------------------VASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTE 951
Query: 204 DIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARIXXXXXXXXXXXXXXX 263
IA RHS PGV LISPPPHHDIYSIEDLA+LIYDLK NP+A++
Sbjct: 952 MIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAA 1011
Query: 264 XXXXXXXEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADG 323
+ I+ISG+ GGTGAS T IK AGLPWE+G++E HQVL LN LR RV L+ DG
Sbjct: 1012 GVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDG 1071
Query: 324 QIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGK 383
++TG D+V+AA+LGA+E G+ TA LI MGC M+R+CH NTCPVG+ QD +LR+KF G
Sbjct: 1072 GLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGT 1131
Query: 384 PEHVINYLFMLAEEV 398
PE V+N LAEEV
Sbjct: 1132 PEKVVNLFTFLAEEV 1146
>pdb|1LLW|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Complex With
2-Oxoglutarate
pdb|1LLZ|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Reduced Enzyme
pdb|1LM1|A Chain A, Structural Studies On The Synchronization Of Catalytic
Centers In Glutamate Synthase: Native Enzyme
pdb|1OFD|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFD|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate At 2.0 Angstrom Resolution
pdb|1OFE|A Chain A, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
pdb|1OFE|B Chain B, Glutamate Synthase From Synechocystis Sp In Complex With
2-Oxoglutarate And L-Don At 2.45 Angstrom Resolution
Length = 1520
Score = 347 bits (889), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 183/376 (48%), Positives = 231/376 (61%), Gaps = 8/376 (2%)
Query: 25 FQEAASNNNKNAYDRFR--ESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFA 82
++ + NN AYD + ++ + LR LDF + + EVE IVKRF
Sbjct: 812 YKVGGNGNNGEAYDHYELYRQYLKDRPVTALRDLLDFNADQPAISLEEVESVESIVKRFC 871
Query: 83 TGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQGKLYPK 142
TG MS G++S EAH TLA AMN++GAKSN+GEGGE+ RYL+ D + P
Sbjct: 872 TGGMSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEG---NSPTLPH 928
Query: 143 TYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVT 202
+ + D +ASGRFGVT YL L+IKMAQGAKPGEGG+LPG KV+
Sbjct: 929 LHGLQNG---DTANSAIKQIASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVS 985
Query: 203 KDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARIXXXXXXXXXXXXXX 262
+ IA R S PGV LISPPPHHDIYSIEDLA+LIYDL NP A++
Sbjct: 986 EYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIA 1045
Query: 263 XXXXXXXXEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQAD 322
+ I ISGHDGGTGAS + IK+AG PWELGV E H+VL N LR RV+L+AD
Sbjct: 1046 AGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRAD 1105
Query: 323 GQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG 382
G ++TG+DVV+AAL+GA+E G + +I GC M R CH N CPVG+ATQ LR++F G
Sbjct: 1106 GGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKG 1165
Query: 383 KPEHVINYLFMLAEEV 398
P V+N+ + +AEEV
Sbjct: 1166 VPGQVVNFFYFIAEEV 1181
>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZF|B Chain B, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound
pdb|1SZG|A Chain A, A198g:l230a Flavocytochrome B2 With Sulfite Bound
pdb|1SZG|B Chain B, A198g:l230a Flavocytochrome B2 With Sulfite Bound
Length = 511
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 388 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 441
>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1FCB|B Chain B, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms
Resolution
pdb|1KBI|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBI|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 511
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 388 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 441
>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LDC|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
pdb|1LCO|B Chain B, X-Ray Structure Of Two Complexes Of The Y143f
Flavocytochrome B2 Mutant Crystallized In The Presence
Of Lactate Or Phenyl-Lactate
Length = 511
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 388 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 441
>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
pdb|2OZ0|B Chain B, Mechanistic And Structural Studies Of H373q
Flavocytochrome B2: Effects Of Mutating The Active Site
Base
Length = 511
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 388 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 441
>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate
pdb|1SZE|B Chain B, L230a Mutant Flavocytochrome B2 With Benzoylformate
Length = 511
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 388 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 441
>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
pdb|1LTD|B Chain B, The 2.6 Angstroms Refined Structure Of The Escherichia
Coli Recombinant Saccharomyces Cerevisiae
Flavocytochrome B2-Sulphite Complex
Length = 506
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 383 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 436
>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
pdb|1KBJ|B Chain B, Crystallographic Study Of The Recombinant Flavin-Binding
Domain Of Baker's Yeast Flavocytochrome B2: Comparison
With The Intact Wild- Type Enzyme
Length = 412
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 289 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 342
>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant
pdb|1QCW|B Chain B, Flavocytochrome B2, Arg289lys Mutant
Length = 410
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 29/54 (53%)
Query: 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354
+AET +L NL+ ++ + DG +R G DV+ A LGA +GL L C
Sbjct: 287 LAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSC 340
>pdb|3KN5|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN5|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
In With Amp-Pnp
pdb|3KN6|A Chain A, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
pdb|3KN6|B Chain B, Crystal Structure Of The C-Terminal Kinase Domain Of Msk1
Length = 325
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 33 NKNAYDRFRES-NMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATGAMSF 88
N+N YD + ++ + Y+ L GQ+ F +HD+ + + A EI+K+ G SF
Sbjct: 182 NQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTS---AVEIMKKIKKGDFSF 235
>pdb|1N7K|A Chain A, Unique Tetrameric Structure Of Deoxyribose Phosphate
Aldolase From Aeropyrum Pernix
pdb|1N7K|B Chain B, Unique Tetrameric Structure Of Deoxyribose Phosphate
Aldolase From Aeropyrum Pernix
Length = 234
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 319 LQADGQIRTGFDVVVAALLGADEIGLSTA 347
++A G IR+G D V+A GAD IG S+A
Sbjct: 195 VKASGGIRSGIDAVLAVGAGADIIGTSSA 223
>pdb|3SR7|A Chain A, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|B Chain B, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|C Chain C, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
pdb|3SR7|D Chain D, Crystal Structure Of S. Mutans Isopentenyl Pyrophosphate
Isomerase
Length = 365
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 304 THQVLALNN--LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349
T QVL LN L +V + A G IR D++ A +LGA +GLS L
Sbjct: 265 TAQVL-LNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTML 311
>pdb|3RJL|A Chain A, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|B Chain B, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|C Chain C, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|D Chain D, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|E Chain E, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|F Chain F, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|G Chain G, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
pdb|3RJL|H Chain H, Crystal Structure Of 1-Pyrroline-5-Carboxylate
Dehydrogenase From Bacillus Licheniformis (Target
Nysgrc-000337)
Length = 538
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 61/135 (45%), Gaps = 22/135 (16%)
Query: 290 IKNAGLPWELGVAETHQVLALNNLRSRVVLQ-ADGQ--------------IRTGFDVVVA 334
+K AG PW A+T + + +R +++ A G+ TG VV+
Sbjct: 121 VKEAGKPWNEADADTAEAIDFMEYYARQMIELAKGKPVNSREGERNQYVYTPTGVTVVIP 180
Query: 335 A--LLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLF 392
L A G + AP++T +++ + PV IA + E+ ++ +G P+ V+N++
Sbjct: 181 PWNFLFAIMAGTTVAPIVTGNTVVLKPA--SAAPV-IAAKFVEVLEE-SGLPKGVVNFVP 236
Query: 393 MLAEEVSRDYRAESP 407
EV DY + P
Sbjct: 237 GSGAEVG-DYLVDHP 250
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.135 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,537,768
Number of Sequences: 62578
Number of extensions: 549684
Number of successful extensions: 1336
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1316
Number of HSP's gapped (non-prelim): 19
length of query: 447
length of database: 14,973,337
effective HSP length: 102
effective length of query: 345
effective length of database: 8,590,381
effective search space: 2963681445
effective search space used: 2963681445
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)