Query psy10999
Match_columns 447
No_of_seqs 372 out of 2356
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 15:34:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0069 GltB Glutamate synthas 100.0 2.2E-99 5E-104 784.8 33.5 388 1-421 87-481 (485)
2 KOG0399|consensus 100.0 3.7E-98 8E-103 807.7 23.0 410 1-439 875-1290(2142)
3 PRK11750 gltB glutamate syntha 100.0 3.8E-95 8E-100 821.9 35.6 405 1-439 781-1189(1485)
4 PF01645 Glu_synthase: Conserv 100.0 3.7E-90 7.9E-95 702.8 28.9 363 16-410 1-368 (368)
5 cd02808 GltS_FMN Glutamate syn 100.0 1E-68 2.2E-73 554.2 34.9 358 31-420 16-389 (392)
6 KOG0538|consensus 100.0 1.8E-41 3.9E-46 331.0 18.9 283 65-420 50-353 (363)
7 PRK11197 lldD L-lactate dehydr 100.0 3.9E-40 8.4E-45 338.0 20.4 294 65-423 52-378 (381)
8 PLN02493 probable peroxisomal 100.0 8E-40 1.7E-44 333.9 22.2 282 66-421 53-355 (367)
9 PF01070 FMN_dh: FMN-dependent 100.0 1.6E-40 3.4E-45 339.9 15.5 287 66-421 41-356 (356)
10 cd04736 MDH_FMN Mandelate dehy 100.0 1.3E-39 2.7E-44 332.1 21.5 287 66-416 47-360 (361)
11 PLN02979 glycolate oxidase 100.0 2.4E-39 5.2E-44 328.4 22.6 290 53-420 40-353 (366)
12 cd03332 LMO_FMN L-Lactate 2-mo 100.0 6.1E-39 1.3E-43 329.6 18.6 333 23-420 22-383 (383)
13 TIGR02708 L_lactate_ox L-lacta 100.0 3.2E-37 6.9E-42 315.1 24.1 321 15-420 8-358 (367)
14 PLN02535 glycolate oxidase 100.0 3.3E-37 7.1E-42 315.0 20.6 279 66-421 55-354 (364)
15 cd02922 FCB2_FMN Flavocytochro 100.0 3.6E-36 7.9E-41 306.3 25.8 272 69-417 50-343 (344)
16 cd04737 LOX_like_FMN L-Lactate 100.0 2.6E-36 5.6E-41 307.6 22.1 273 66-418 55-349 (351)
17 COG1304 idi Isopentenyl diphos 100.0 1.8E-34 3.8E-39 294.5 18.2 282 63-423 46-351 (360)
18 PRK05437 isopentenyl pyrophosp 100.0 4.5E-34 9.7E-39 292.2 18.9 279 62-422 39-338 (352)
19 cd02811 IDI-2_FMN Isopentenyl- 100.0 6.8E-33 1.5E-37 280.9 21.1 267 62-416 31-325 (326)
20 TIGR02151 IPP_isom_2 isopenten 100.0 1.8E-31 3.9E-36 271.3 18.7 277 61-419 31-328 (333)
21 cd02809 alpha_hydroxyacid_oxid 100.0 1.5E-28 3.2E-33 246.3 22.7 236 68-416 49-298 (299)
22 PRK05458 guanosine 5'-monophos 99.9 1.6E-21 3.5E-26 197.2 18.1 267 62-417 16-310 (326)
23 TIGR01306 GMP_reduct_2 guanosi 99.9 2.6E-20 5.7E-25 187.8 18.7 268 62-418 13-308 (321)
24 PRK06843 inosine 5-monophospha 99.8 6.3E-18 1.4E-22 175.2 17.1 166 230-417 179-380 (404)
25 cd00381 IMPDH IMPDH: The catal 99.8 8.3E-18 1.8E-22 170.8 17.4 167 230-418 120-319 (325)
26 PRK08649 inosine 5-monophospha 99.7 2.5E-17 5.4E-22 169.6 15.6 169 232-416 176-361 (368)
27 TIGR01305 GMP_reduct_1 guanosi 99.7 6.5E-17 1.4E-21 162.7 15.5 175 231-427 136-340 (343)
28 PTZ00314 inosine-5'-monophosph 99.7 1.9E-16 4E-21 169.1 14.2 163 233-417 270-466 (495)
29 PRK05096 guanosine 5'-monophos 99.7 6.6E-16 1.4E-20 155.4 14.8 178 231-430 137-344 (346)
30 TIGR01302 IMP_dehydrog inosine 99.6 1.6E-15 3.4E-20 160.4 14.8 165 230-416 250-449 (450)
31 PRK05567 inosine 5'-monophosph 99.6 2.9E-15 6.3E-20 159.8 14.5 165 230-416 254-453 (486)
32 PF03060 NMO: Nitronate monoox 99.6 1.7E-15 3.8E-20 154.1 9.7 104 234-356 127-230 (330)
33 PRK07107 inosine 5-monophospha 99.6 6.1E-15 1.3E-19 157.6 14.3 166 233-417 271-471 (502)
34 PF00478 IMPDH: IMP dehydrogen 99.6 2.7E-15 5.8E-20 153.1 9.7 178 230-418 134-335 (352)
35 TIGR01304 IMP_DH_rel_2 IMP deh 99.6 9.9E-15 2.2E-19 150.3 13.4 160 236-416 180-363 (369)
36 TIGR01303 IMP_DH_rel_1 IMP deh 99.6 2.5E-14 5.5E-19 151.9 15.1 166 230-417 251-455 (475)
37 PLN02274 inosine-5'-monophosph 99.6 2E-14 4.3E-19 153.8 13.4 175 233-418 277-473 (505)
38 COG2070 Dioxygenases related t 99.5 3.1E-14 6.6E-19 145.3 11.5 107 234-356 118-224 (336)
39 cd04743 NPD_PKS 2-Nitropropane 99.5 8.4E-14 1.8E-18 140.7 12.4 106 236-355 96-212 (320)
40 TIGR03151 enACPred_II putative 99.5 9.8E-14 2.1E-18 140.1 12.7 194 75-356 8-201 (307)
41 PRK07565 dihydroorotate dehydr 99.5 9.4E-13 2E-17 134.2 14.4 174 231-443 152-330 (334)
42 PRK07807 inosine 5-monophospha 99.4 9.3E-13 2E-17 140.1 14.2 177 230-417 253-457 (479)
43 cd04742 NPD_FabD 2-Nitropropan 99.4 2E-12 4.3E-17 134.8 12.4 90 258-356 165-259 (418)
44 PLN02826 dihydroorotate dehydr 99.3 3.1E-11 6.7E-16 126.2 17.5 156 219-417 226-405 (409)
45 cd04739 DHOD_like Dihydroorota 99.3 2.2E-11 4.7E-16 124.0 13.6 149 230-421 149-305 (325)
46 TIGR02814 pfaD_fam PfaD family 99.3 3.7E-11 8.1E-16 126.1 14.3 89 259-356 171-264 (444)
47 TIGR01037 pyrD_sub1_fam dihydr 99.2 9.2E-11 2E-15 117.6 14.1 148 227-417 140-297 (300)
48 cd04740 DHOD_1B_like Dihydroor 99.2 5.9E-10 1.3E-14 111.5 15.7 145 227-417 137-294 (296)
49 KOG2550|consensus 99.1 1.8E-10 3.8E-15 117.8 8.2 167 228-417 276-475 (503)
50 PRK07259 dihydroorotate dehydr 99.1 1.8E-09 3.8E-14 108.5 15.3 145 227-417 140-297 (301)
51 COG0167 PyrD Dihydroorotate de 99.1 6.3E-10 1.4E-14 112.2 11.3 157 224-420 140-308 (310)
52 PRK05286 dihydroorotate dehydr 99.0 5.6E-09 1.2E-13 107.2 15.2 124 225-350 187-323 (344)
53 cd02940 DHPD_FMN Dihydropyrimi 99.0 3.3E-09 7.2E-14 106.7 12.2 118 227-350 151-286 (299)
54 PLN02495 oxidoreductase, actin 98.9 1.3E-08 2.7E-13 105.9 13.2 165 227-430 165-348 (385)
55 PRK02506 dihydroorotate dehydr 98.9 2.4E-08 5.2E-13 101.2 14.7 151 228-418 141-306 (310)
56 cd04738 DHOD_2_like Dihydrooro 98.9 9.8E-09 2.1E-13 104.6 11.4 123 226-350 179-314 (327)
57 PRK08318 dihydropyrimidine deh 98.9 1.7E-08 3.8E-13 106.0 12.3 149 227-417 151-317 (420)
58 cd02810 DHOD_DHPD_FMN Dihydroo 98.8 2.8E-08 6E-13 98.9 12.8 118 227-350 145-277 (289)
59 TIGR01036 pyrD_sub2 dihydrooro 98.8 2.3E-08 5.1E-13 102.3 12.2 124 225-350 184-322 (335)
60 cd04741 DHOD_1A_like Dihydroor 98.8 7.4E-08 1.6E-12 96.8 15.3 120 228-350 141-277 (294)
61 TIGR00736 nifR3_rel_arch TIM-b 98.7 7.9E-08 1.7E-12 93.6 11.9 104 228-350 119-225 (231)
62 PF01180 DHO_dh: Dihydroorotat 98.6 1.7E-07 3.7E-12 94.0 8.2 122 226-350 143-278 (295)
63 TIGR00737 nifR3_yhdG putative 98.5 7.8E-07 1.7E-11 90.3 12.5 106 229-350 116-227 (319)
64 PF04131 NanE: Putative N-acet 98.5 2.3E-07 4.9E-12 87.2 7.8 96 230-348 79-176 (192)
65 cd02911 arch_FMN Archeal FMN-b 98.5 7.4E-07 1.6E-11 86.9 11.3 97 228-347 124-222 (233)
66 PRK10415 tRNA-dihydrouridine s 98.5 1.1E-06 2.5E-11 89.4 12.6 107 228-350 117-229 (321)
67 cd02801 DUS_like_FMN Dihydrour 98.5 1.2E-06 2.5E-11 84.1 11.5 106 229-350 108-218 (231)
68 PRK01130 N-acetylmannosamine-6 98.5 8.3E-07 1.8E-11 85.2 9.8 101 231-349 106-206 (221)
69 cd04722 TIM_phosphate_binding 98.4 2.7E-06 5.8E-11 77.6 10.6 102 229-346 98-200 (200)
70 PRK10550 tRNA-dihydrouridine s 98.4 3.8E-06 8.2E-11 85.4 12.5 107 229-350 116-229 (312)
71 cd04729 NanE N-acetylmannosami 98.4 2.8E-06 6.1E-11 81.6 10.8 101 232-350 111-211 (219)
72 cd02803 OYE_like_FMN_family Ol 98.3 4.8E-06 1E-10 84.3 12.7 109 232-350 194-316 (327)
73 cd04730 NPD_like 2-Nitropropan 98.3 4.7E-06 1E-10 80.3 11.3 103 234-355 93-195 (236)
74 COG3010 NanE Putative N-acetyl 98.3 1.7E-05 3.7E-10 75.4 13.2 96 231-348 115-212 (229)
75 TIGR00742 yjbN tRNA dihydrouri 98.2 1.1E-05 2.5E-10 82.1 12.2 114 228-350 107-228 (318)
76 PRK11815 tRNA-dihydrouridine s 98.2 1.6E-05 3.4E-10 81.5 12.6 113 229-350 118-238 (333)
77 PF01207 Dus: Dihydrouridine s 98.1 1.3E-05 2.8E-10 81.3 9.7 107 228-350 106-218 (309)
78 cd02931 ER_like_FMN Enoate red 98.1 3.9E-05 8.5E-10 80.0 12.6 110 232-350 204-340 (382)
79 KOG1436|consensus 98.0 5E-05 1.1E-09 76.3 12.1 149 224-417 225-395 (398)
80 COG0042 tRNA-dihydrouridine sy 98.0 3.8E-05 8.2E-10 78.5 11.4 110 227-350 118-233 (323)
81 cd02933 OYE_like_FMN Old yello 98.0 5.5E-05 1.2E-09 77.7 12.0 102 232-350 205-319 (338)
82 cd04728 ThiG Thiazole synthase 98.0 4.4E-05 9.5E-10 74.7 10.3 77 257-349 132-208 (248)
83 PRK00208 thiG thiazole synthas 98.0 4.5E-05 9.7E-10 74.7 10.3 77 257-349 132-208 (250)
84 PRK11750 gltB glutamate syntha 98.0 5.4E-05 1.2E-09 89.1 12.7 128 261-418 602-731 (1485)
85 cd04735 OYE_like_4_FMN Old yel 98.0 6.8E-05 1.5E-09 77.4 12.0 108 232-350 197-318 (353)
86 PRK00507 deoxyribose-phosphate 98.0 7.3E-05 1.6E-09 72.5 11.3 102 229-349 105-212 (221)
87 TIGR00343 pyridoxal 5'-phospha 97.9 4.4E-05 9.6E-10 76.0 9.8 103 234-350 104-233 (287)
88 cd04734 OYE_like_3_FMN Old yel 97.9 0.00011 2.3E-09 75.7 12.8 110 232-350 194-320 (343)
89 cd04733 OYE_like_2_FMN Old yel 97.9 0.00012 2.6E-09 75.0 12.4 109 232-350 202-327 (338)
90 cd04727 pdxS PdxS is a subunit 97.9 7.8E-05 1.7E-09 74.2 10.5 104 233-350 101-230 (283)
91 PRK13523 NADPH dehydrogenase N 97.9 0.0001 2.2E-09 75.8 11.0 106 232-350 195-310 (337)
92 PRK05848 nicotinate-nucleotide 97.8 0.00019 4.2E-09 71.7 11.2 96 230-349 166-261 (273)
93 KOG2335|consensus 97.7 0.0006 1.3E-08 69.9 14.1 137 228-381 125-267 (358)
94 cd02930 DCR_FMN 2,4-dienoyl-Co 97.7 0.00024 5.3E-09 73.2 11.4 108 232-350 190-311 (353)
95 TIGR00262 trpA tryptophan synt 97.7 0.00098 2.1E-08 66.0 15.1 37 316-352 198-234 (256)
96 cd02932 OYE_YqiM_FMN Old yello 97.7 0.00032 6.9E-09 71.8 11.9 107 232-350 207-325 (336)
97 PF04898 Glu_syn_central: Glut 97.7 0.00024 5.1E-09 71.3 10.6 128 261-417 147-276 (287)
98 COG1902 NemA NADH:flavin oxido 97.7 0.00041 8.8E-09 72.1 12.5 108 232-350 202-323 (363)
99 PRK07695 transcriptional regul 97.7 0.00044 9.5E-09 65.5 11.2 97 236-350 86-182 (201)
100 COG0274 DeoC Deoxyribose-phosp 97.7 0.0002 4.3E-09 69.2 8.7 103 228-348 107-215 (228)
101 PF05690 ThiG: Thiazole biosyn 97.6 0.00036 7.8E-09 67.9 10.2 77 257-349 132-208 (247)
102 cd04731 HisF The cyclase subun 97.6 0.0003 6.5E-09 68.4 10.0 75 260-350 153-228 (243)
103 cd00331 IGPS Indole-3-glycerol 97.6 0.00062 1.3E-08 65.1 11.9 99 230-350 108-206 (217)
104 cd04732 HisA HisA. Phosphorib 97.6 0.00071 1.5E-08 65.1 12.3 75 260-350 150-224 (234)
105 TIGR03572 WbuZ glycosyl amidat 97.6 0.00067 1.5E-08 65.5 12.0 73 260-348 157-230 (232)
106 PF04481 DUF561: Protein of un 97.6 0.00032 6.9E-09 67.4 8.8 110 228-348 101-217 (242)
107 TIGR00126 deoC deoxyribose-pho 97.6 0.00079 1.7E-08 64.9 11.5 98 230-347 102-206 (211)
108 PRK13125 trpA tryptophan synth 97.5 0.0034 7.3E-08 61.6 15.9 105 230-351 116-220 (244)
109 cd02929 TMADH_HD_FMN Trimethyl 97.5 0.00064 1.4E-08 70.7 11.3 108 232-350 203-324 (370)
110 PRK01033 imidazole glycerol ph 97.5 0.00062 1.4E-08 67.3 10.6 76 259-351 155-232 (258)
111 PRK13585 1-(5-phosphoribosyl)- 97.5 0.0011 2.4E-08 64.3 12.0 76 259-350 152-227 (241)
112 PRK08255 salicylyl-CoA 5-hydro 97.5 0.00072 1.6E-08 76.6 12.1 107 232-350 604-722 (765)
113 PRK08385 nicotinate-nucleotide 97.5 0.0011 2.4E-08 66.4 11.6 96 231-349 168-263 (278)
114 TIGR00007 phosphoribosylformim 97.5 0.00047 1E-08 66.4 8.6 74 260-350 149-223 (230)
115 CHL00162 thiG thiamin biosynth 97.4 0.00029 6.2E-09 69.2 6.6 77 258-350 147-223 (267)
116 PRK04180 pyridoxal biosynthesi 97.4 0.00075 1.6E-08 67.6 9.5 103 234-350 111-239 (293)
117 TIGR00735 hisF imidazoleglycer 97.4 0.0016 3.5E-08 64.1 11.7 76 259-350 158-234 (254)
118 cd00959 DeoC 2-deoxyribose-5-p 97.4 0.0021 4.7E-08 61.2 12.0 95 230-344 101-202 (203)
119 PRK14024 phosphoribosyl isomer 97.4 0.0013 2.7E-08 64.4 10.5 75 260-350 150-227 (241)
120 CHL00200 trpA tryptophan synth 97.4 0.0051 1.1E-07 61.2 14.9 51 299-352 188-238 (263)
121 cd04747 OYE_like_5_FMN Old yel 97.3 0.002 4.2E-08 67.0 11.8 104 232-350 197-333 (361)
122 TIGR00735 hisF imidazoleglycer 97.3 0.00097 2.1E-08 65.7 8.8 76 259-350 33-108 (254)
123 PRK00748 1-(5-phosphoribosyl)- 97.3 0.001 2.3E-08 64.0 8.3 75 260-351 150-226 (233)
124 PRK00278 trpC indole-3-glycero 97.2 0.0028 6.1E-08 62.9 11.4 99 230-350 147-245 (260)
125 PRK05283 deoxyribose-phosphate 97.2 0.0029 6.3E-08 62.7 11.0 99 230-342 115-221 (257)
126 PRK00043 thiE thiamine-phospha 97.2 0.0025 5.4E-08 60.2 10.1 78 259-349 114-192 (212)
127 PRK10605 N-ethylmaleimide redu 97.2 0.0041 8.8E-08 64.6 12.4 101 232-350 212-326 (362)
128 cd04731 HisF The cyclase subun 97.1 0.0016 3.5E-08 63.3 8.5 96 258-370 29-127 (243)
129 TIGR03128 RuMP_HxlA 3-hexulose 97.1 0.0053 1.2E-07 58.0 11.6 101 231-349 90-190 (206)
130 PRK02083 imidazole glycerol ph 97.1 0.0016 3.5E-08 63.9 8.2 74 260-350 157-232 (253)
131 PF00724 Oxidored_FMN: NADH:fl 97.1 0.0011 2.3E-08 68.2 6.7 110 232-350 202-326 (341)
132 PLN02411 12-oxophytodienoate r 97.1 0.0058 1.2E-07 64.2 12.2 109 232-350 218-347 (391)
133 PRK14024 phosphoribosyl isomer 97.1 0.002 4.4E-08 63.0 8.2 74 260-350 36-109 (241)
134 PRK11840 bifunctional sulfur c 97.1 0.0039 8.4E-08 63.6 10.4 77 257-349 206-282 (326)
135 PRK02083 imidazole glycerol ph 97.1 0.0024 5.1E-08 62.7 8.7 75 259-350 33-108 (253)
136 PRK07428 nicotinate-nucleotide 97.0 0.0061 1.3E-07 61.5 11.6 95 232-350 182-276 (288)
137 PRK00748 1-(5-phosphoribosyl)- 97.0 0.003 6.6E-08 60.8 8.8 76 259-350 33-108 (233)
138 PRK13111 trpA tryptophan synth 97.0 0.018 4E-07 57.1 14.4 107 230-352 129-235 (258)
139 TIGR01304 IMP_DH_rel_2 IMP deh 97.0 0.0076 1.6E-07 62.8 12.0 98 228-346 117-217 (369)
140 PRK08649 inosine 5-monophospha 97.0 0.0055 1.2E-07 63.8 10.7 98 229-346 117-216 (368)
141 cd04724 Tryptophan_synthase_al 96.9 0.011 2.4E-07 57.9 12.2 107 230-352 116-222 (242)
142 PTZ00314 inosine-5'-monophosph 96.9 0.013 2.7E-07 63.5 13.5 67 260-345 244-310 (495)
143 cd04726 KGPDC_HPS 3-Keto-L-gul 96.9 0.0096 2.1E-07 55.9 11.1 99 231-349 91-190 (202)
144 PRK13587 1-(5-phosphoribosyl)- 96.9 0.011 2.4E-07 57.7 11.8 74 260-350 152-226 (234)
145 PRK04302 triosephosphate isome 96.9 0.012 2.6E-07 56.9 11.8 106 230-350 101-207 (223)
146 cd04732 HisA HisA. Phosphorib 96.8 0.0053 1.1E-07 59.1 8.9 75 260-350 33-107 (234)
147 cd00564 TMP_TenI Thiamine mono 96.8 0.0066 1.4E-07 55.9 9.1 77 259-349 105-182 (196)
148 cd04723 HisA_HisF Phosphoribos 96.8 0.012 2.6E-07 57.3 11.3 73 260-350 150-223 (233)
149 COG0159 TrpA Tryptophan syntha 96.8 0.052 1.1E-06 54.1 15.7 49 301-353 193-241 (265)
150 PRK07028 bifunctional hexulose 96.7 0.016 3.6E-07 61.3 12.4 99 232-349 96-194 (430)
151 PF01729 QRPTase_C: Quinolinat 96.7 0.013 2.9E-07 54.6 9.9 94 232-350 66-160 (169)
152 PLN02591 tryptophan synthase 96.7 0.051 1.1E-06 53.8 14.4 108 230-352 118-225 (250)
153 PRK07896 nicotinate-nucleotide 96.6 0.017 3.7E-07 58.3 10.9 94 231-349 185-278 (289)
154 TIGR00734 hisAF_rel hisA/hisF 96.6 0.0088 1.9E-07 58.0 8.4 48 296-350 171-218 (221)
155 PLN02334 ribulose-phosphate 3- 96.6 0.03 6.5E-07 54.2 11.9 102 232-349 104-206 (229)
156 cd00958 DhnA Class I fructose- 96.6 0.018 3.8E-07 55.7 10.3 65 262-350 149-219 (235)
157 COG2022 ThiG Uncharacterized e 96.6 0.0067 1.5E-07 59.0 7.2 77 258-350 140-216 (262)
158 cd01568 QPRTase_NadC Quinolina 96.5 0.02 4.4E-07 57.1 10.6 89 234-348 169-258 (269)
159 PF00977 His_biosynth: Histidi 96.5 0.014 3.1E-07 56.7 9.3 75 258-349 149-224 (229)
160 PRK05742 nicotinate-nucleotide 96.5 0.017 3.7E-07 58.0 10.1 89 233-349 177-265 (277)
161 COG0106 HisA Phosphoribosylfor 96.5 0.026 5.6E-07 55.4 11.0 99 234-350 112-226 (241)
162 cd01572 QPRTase Quinolinate ph 96.5 0.017 3.7E-07 57.6 9.8 89 233-349 169-258 (268)
163 cd00945 Aldolase_Class_I Class 96.4 0.06 1.3E-06 49.5 12.7 100 229-345 96-201 (201)
164 TIGR00078 nadC nicotinate-nucl 96.4 0.027 5.8E-07 56.2 10.8 89 232-348 164-253 (265)
165 PF00290 Trp_syntA: Tryptophan 96.4 0.097 2.1E-06 52.1 14.6 51 299-353 184-234 (259)
166 TIGR01334 modD putative molybd 96.3 0.027 5.9E-07 56.6 10.4 94 230-348 173-266 (277)
167 PRK13585 1-(5-phosphoribosyl)- 96.3 0.016 3.5E-07 56.2 8.5 74 260-349 36-109 (241)
168 cd01571 NAPRTase_B Nicotinate 96.3 0.066 1.4E-06 54.4 13.0 104 232-350 170-278 (302)
169 PRK06543 nicotinate-nucleotide 96.3 0.033 7.2E-07 56.0 10.7 92 230-348 177-268 (281)
170 PRK08883 ribulose-phosphate 3- 96.3 0.088 1.9E-06 51.1 13.3 105 232-349 95-199 (220)
171 TIGR03572 WbuZ glycosyl amidat 96.3 0.015 3.3E-07 56.1 7.9 74 260-350 34-108 (232)
172 PRK06106 nicotinate-nucleotide 96.3 0.035 7.7E-07 55.8 10.7 91 232-349 180-270 (281)
173 PRK08072 nicotinate-nucleotide 96.2 0.041 9E-07 55.2 11.0 91 232-349 174-264 (277)
174 PRK06559 nicotinate-nucleotide 96.2 0.037 8E-07 55.9 10.6 92 231-349 182-273 (290)
175 COG0157 NadC Nicotinate-nucleo 96.2 0.04 8.7E-07 55.1 10.6 93 231-348 173-265 (280)
176 TIGR00693 thiE thiamine-phosph 96.2 0.026 5.6E-07 52.9 8.9 77 260-349 107-184 (196)
177 PRK13587 1-(5-phosphoribosyl)- 96.2 0.025 5.4E-07 55.3 9.0 70 261-349 36-109 (234)
178 PRK06096 molybdenum transport 96.2 0.041 8.9E-07 55.5 10.6 93 230-347 174-266 (284)
179 cd00956 Transaldolase_FSA Tran 96.1 0.075 1.6E-06 51.2 11.9 101 234-352 92-192 (211)
180 TIGR01182 eda Entner-Doudoroff 96.1 0.031 6.8E-07 53.7 9.1 91 231-352 45-142 (204)
181 PRK04128 1-(5-phosphoribosyl)- 96.1 0.021 4.6E-07 55.6 8.0 47 296-349 60-106 (228)
182 cd01573 modD_like ModD; Quinol 96.1 0.063 1.4E-06 53.8 11.4 91 233-348 171-261 (272)
183 PRK09016 quinolinate phosphori 96.0 0.045 9.7E-07 55.4 10.2 90 232-349 195-284 (296)
184 cd00429 RPE Ribulose-5-phospha 96.0 0.1 2.2E-06 48.9 12.2 72 268-349 126-198 (211)
185 COG0214 SNZ1 Pyridoxine biosyn 96.0 0.035 7.5E-07 54.2 8.8 35 316-350 208-242 (296)
186 PLN02716 nicotinate-nucleotide 95.9 0.068 1.5E-06 54.4 11.0 101 234-349 188-294 (308)
187 PRK04169 geranylgeranylglycery 95.9 0.033 7.2E-07 54.5 8.5 65 267-349 152-217 (232)
188 PRK14114 1-(5-phosphoribosyl)- 95.9 0.023 5.1E-07 55.8 7.3 70 262-349 150-227 (241)
189 cd04723 HisA_HisF Phosphoribos 95.9 0.023 4.9E-07 55.4 7.2 73 260-349 39-111 (233)
190 PRK07226 fructose-bisphosphate 95.8 0.041 8.8E-07 54.7 8.8 65 262-350 166-236 (267)
191 PTZ00170 D-ribulose-5-phosphat 95.8 0.11 2.3E-06 50.7 11.5 109 234-348 54-204 (228)
192 PRK01033 imidazole glycerol ph 95.8 0.044 9.6E-07 54.2 8.9 74 260-350 34-108 (258)
193 TIGR01163 rpe ribulose-phospha 95.8 0.13 2.7E-06 48.4 11.6 75 265-349 122-197 (210)
194 TIGR02129 hisA_euk phosphoribo 95.7 0.032 6.9E-07 55.3 7.5 67 260-349 42-108 (253)
195 PF00218 IGPS: Indole-3-glycer 95.7 0.05 1.1E-06 54.0 8.8 100 230-351 145-244 (254)
196 cd02812 PcrB_like PcrB_like pr 95.7 0.032 7E-07 54.2 7.4 68 262-349 141-208 (219)
197 TIGR00007 phosphoribosylformim 95.7 0.056 1.2E-06 52.0 8.9 74 260-350 32-106 (230)
198 TIGR01949 AroFGH_arch predicte 95.6 0.076 1.6E-06 52.4 9.6 93 234-350 123-232 (258)
199 PF01884 PcrB: PcrB family; I 95.5 0.035 7.7E-07 54.2 7.0 65 267-349 151-215 (230)
200 PF01791 DeoC: DeoC/LacD famil 95.5 0.11 2.3E-06 50.6 10.3 74 262-348 152-233 (236)
201 cd00405 PRAI Phosphoribosylant 95.5 0.074 1.6E-06 50.4 9.0 95 234-350 86-186 (203)
202 TIGR01919 hisA-trpF 1-(5-phosp 95.5 0.042 9.1E-07 54.1 7.5 47 296-349 180-229 (243)
203 PRK06978 nicotinate-nucleotide 95.4 0.12 2.7E-06 52.2 10.6 88 233-348 193-280 (294)
204 PRK09140 2-dehydro-3-deoxy-6-p 95.4 0.1 2.2E-06 50.1 9.7 33 316-349 151-183 (206)
205 TIGR00259 thylakoid_BtpA membr 95.4 0.079 1.7E-06 52.7 8.9 73 257-349 158-231 (257)
206 PRK13802 bifunctional indole-3 95.4 0.14 3.1E-06 57.5 11.9 100 230-351 147-246 (695)
207 cd00452 KDPG_aldolase KDPG and 95.3 0.049 1.1E-06 51.3 6.9 70 258-349 106-175 (190)
208 PRK13957 indole-3-glycerol-pho 95.3 0.21 4.6E-06 49.4 11.5 101 228-351 136-236 (247)
209 PRK06843 inosine 5-monophospha 95.3 0.15 3.3E-06 53.8 11.1 67 260-345 156-222 (404)
210 TIGR01305 GMP_reduct_1 guanosi 95.3 0.17 3.7E-06 52.1 11.0 98 224-345 75-178 (343)
211 PRK13586 1-(5-phosphoribosyl)- 95.2 0.067 1.5E-06 52.3 7.7 33 317-349 190-222 (232)
212 PRK06512 thiamine-phosphate py 95.2 0.17 3.7E-06 49.1 10.3 75 260-350 122-197 (221)
213 COG0134 TrpC Indole-3-glycerol 95.1 0.21 4.6E-06 49.5 10.9 100 230-351 143-242 (254)
214 PRK05581 ribulose-phosphate 3- 95.1 0.25 5.4E-06 46.9 11.1 104 232-349 98-202 (220)
215 TIGR00875 fsa_talC_mipB fructo 95.0 0.32 7E-06 47.1 11.8 79 261-352 114-192 (213)
216 TIGR01919 hisA-trpF 1-(5-phosp 95.0 0.11 2.3E-06 51.3 8.6 46 297-349 62-107 (243)
217 TIGR01769 GGGP geranylgeranylg 95.0 0.11 2.5E-06 49.9 8.6 66 262-345 140-205 (205)
218 cd00381 IMPDH IMPDH: The catal 95.0 0.33 7.1E-06 49.8 12.5 94 228-345 68-163 (325)
219 PF03437 BtpA: BtpA family; I 95.0 0.19 4.2E-06 49.9 10.4 70 259-349 161-231 (254)
220 PRK14114 1-(5-phosphoribosyl)- 95.0 0.11 2.4E-06 51.0 8.7 72 260-349 34-106 (241)
221 PF00478 IMPDH: IMP dehydrogen 95.0 0.28 6E-06 51.0 11.8 102 225-345 68-177 (352)
222 cd00452 KDPG_aldolase KDPG and 94.9 0.23 4.9E-06 46.7 10.2 82 232-344 42-123 (190)
223 PRK02615 thiamine-phosphate py 94.9 0.13 2.8E-06 53.3 9.1 78 259-350 250-327 (347)
224 COG0107 HisF Imidazoleglycerol 94.8 0.15 3.3E-06 49.8 8.8 74 261-350 35-108 (256)
225 PF00977 His_biosynth: Histidi 94.8 0.039 8.4E-07 53.7 4.8 71 260-350 33-107 (229)
226 PRK04128 1-(5-phosphoribosyl)- 94.8 0.025 5.4E-07 55.1 3.5 35 316-350 182-216 (228)
227 COG4981 Enoyl reductase domain 94.7 0.29 6.3E-06 53.0 11.3 229 79-376 35-300 (717)
228 TIGR01768 GGGP-family geranylg 94.7 0.17 3.7E-06 49.3 8.9 65 268-349 148-212 (223)
229 PRK13586 1-(5-phosphoribosyl)- 94.6 0.16 3.5E-06 49.6 8.6 73 260-349 34-106 (232)
230 PRK01362 putative translaldola 94.3 0.57 1.2E-05 45.4 11.6 79 261-352 114-192 (214)
231 PRK08227 autoinducer 2 aldolas 94.3 0.28 6.1E-06 49.0 9.7 89 230-348 127-229 (264)
232 TIGR00640 acid_CoA_mut_C methy 94.3 0.38 8.3E-06 43.0 9.6 74 258-348 42-116 (132)
233 PRK12653 fructose-6-phosphate 94.2 0.89 1.9E-05 44.2 12.6 78 262-352 117-194 (220)
234 TIGR00734 hisAF_rel hisA/hisF 94.2 0.17 3.7E-06 49.0 7.6 68 260-349 40-112 (221)
235 PRK07188 nicotinate phosphorib 94.1 0.54 1.2E-05 48.9 11.6 116 231-350 188-315 (352)
236 PRK09427 bifunctional indole-3 94.0 0.48 1E-05 50.9 11.4 99 230-351 146-244 (454)
237 cd04726 KGPDC_HPS 3-Keto-L-gul 94.0 0.88 1.9E-05 42.5 11.9 89 234-345 42-133 (202)
238 PRK06015 keto-hydroxyglutarate 93.9 0.29 6.2E-06 47.0 8.5 90 232-352 42-138 (201)
239 PLN02460 indole-3-glycerol-pho 93.8 0.33 7.2E-06 50.1 9.3 105 230-351 217-323 (338)
240 PRK08662 nicotinate phosphorib 93.8 0.79 1.7E-05 47.5 12.2 104 233-351 187-294 (343)
241 PF02581 TMP-TENI: Thiamine mo 93.7 0.25 5.4E-06 46.0 7.7 75 259-347 105-179 (180)
242 PRK09722 allulose-6-phosphate 93.7 1.6 3.5E-05 42.7 13.5 105 232-350 97-202 (229)
243 cd00331 IGPS Indole-3-glycerol 93.7 0.1 2.2E-06 49.8 5.1 73 258-349 33-105 (217)
244 PLN02446 (5-phosphoribosyl)-5- 93.7 0.24 5.1E-06 49.5 7.7 69 260-349 47-115 (262)
245 COG0352 ThiE Thiamine monophos 93.6 1.1 2.4E-05 43.3 12.0 80 258-351 113-192 (211)
246 cd00516 PRTase_typeII Phosphor 93.5 0.83 1.8E-05 45.4 11.4 102 234-350 170-272 (281)
247 PRK07455 keto-hydroxyglutarate 93.4 0.24 5.1E-06 46.8 6.9 71 258-349 114-184 (187)
248 PRK05718 keto-hydroxyglutarate 93.2 0.49 1.1E-05 45.8 8.9 82 232-344 53-134 (212)
249 cd02072 Glm_B12_BD B12 binding 93.1 0.85 1.8E-05 40.8 9.6 71 258-344 39-114 (128)
250 COG0269 SgbH 3-hexulose-6-phos 93.1 1 2.2E-05 43.7 10.7 92 234-348 45-140 (217)
251 TIGR01306 GMP_reduct_2 guanosi 93.0 0.81 1.7E-05 47.0 10.5 93 228-345 67-165 (321)
252 PRK06552 keto-hydroxyglutarate 93.0 0.47 1E-05 45.9 8.4 82 232-344 51-135 (213)
253 COG0106 HisA Phosphoribosylfor 92.9 0.55 1.2E-05 46.2 8.8 69 262-349 37-108 (241)
254 PRK06552 keto-hydroxyglutarate 92.9 0.58 1.3E-05 45.2 8.9 88 234-349 100-187 (213)
255 PLN02446 (5-phosphoribosyl)-5- 92.8 0.38 8.3E-06 48.0 7.7 69 262-348 169-241 (262)
256 KOG1606|consensus 92.6 0.33 7.1E-06 46.9 6.6 34 316-349 207-242 (296)
257 TIGR02134 transald_staph trans 92.6 2.8 6.1E-05 41.3 13.3 103 234-352 103-206 (236)
258 PF01081 Aldolase: KDPG and KH 92.5 0.29 6.3E-06 46.8 6.2 91 232-353 46-143 (196)
259 PRK13307 bifunctional formalde 92.5 2.3 4.9E-05 44.9 13.4 99 229-348 262-361 (391)
260 PRK05096 guanosine 5'-monophos 92.5 1.2 2.6E-05 46.0 10.9 98 224-345 76-179 (346)
261 PLN02417 dihydrodipicolinate s 92.3 1.1 2.4E-05 44.8 10.4 93 263-397 29-125 (280)
262 TIGR02313 HpaI-NOT-DapA 2,4-di 92.3 1.1 2.4E-05 45.1 10.5 94 263-398 28-125 (294)
263 PRK08745 ribulose-phosphate 3- 92.1 3.3 7.1E-05 40.4 13.1 101 232-348 99-202 (223)
264 cd00951 KDGDH 5-dehydro-4-deox 92.1 1.1 2.3E-05 45.0 10.0 72 263-350 28-106 (289)
265 PRK12656 fructose-6-phosphate 91.9 2.4 5.3E-05 41.3 11.9 79 261-352 118-196 (222)
266 TIGR01859 fruc_bis_ald_ fructo 91.9 3.3 7.2E-05 41.7 13.3 119 260-409 156-278 (282)
267 PRK13813 orotidine 5'-phosphat 91.7 0.55 1.2E-05 44.8 7.1 30 319-348 165-195 (215)
268 PRK08999 hypothetical protein; 91.7 0.5 1.1E-05 47.6 7.1 73 260-347 237-310 (312)
269 PRK08091 ribulose-phosphate 3- 91.5 3.2 7E-05 40.6 12.3 105 232-348 105-210 (228)
270 COG0107 HisF Imidazoleglycerol 91.4 0.39 8.5E-06 47.0 5.7 45 299-350 189-234 (256)
271 PRK12655 fructose-6-phosphate 91.3 2.7 5.9E-05 40.9 11.5 78 262-352 117-194 (220)
272 PRK13306 ulaD 3-keto-L-gulonat 91.3 1.8 4E-05 41.7 10.3 42 234-278 45-89 (216)
273 PLN02274 inosine-5'-monophosph 91.2 1.1 2.4E-05 48.8 9.5 67 260-345 251-317 (505)
274 PRK03620 5-dehydro-4-deoxygluc 91.2 1.6 3.5E-05 44.2 10.2 90 263-398 35-131 (303)
275 PLN02495 oxidoreductase, actin 91.0 2.9 6.3E-05 44.0 12.2 111 228-349 96-218 (385)
276 TIGR01302 IMP_dehydrog inosine 91.0 0.5 1.1E-05 50.6 6.7 67 260-345 227-293 (450)
277 PLN02617 imidazole glycerol ph 91.0 0.88 1.9E-05 49.9 8.6 77 261-350 272-359 (538)
278 cd00408 DHDPS-like Dihydrodipi 90.8 2.2 4.7E-05 42.3 10.6 91 263-398 25-122 (281)
279 PRK07565 dihydroorotate dehydr 90.7 3.4 7.3E-05 42.4 12.2 108 228-347 85-199 (334)
280 PLN02617 imidazole glycerol ph 90.6 0.69 1.5E-05 50.7 7.4 75 259-350 441-517 (538)
281 TIGR03128 RuMP_HxlA 3-hexulose 90.6 2.7 5.8E-05 39.6 10.6 90 233-346 40-134 (206)
282 COG2185 Sbm Methylmalonyl-CoA 90.5 1.5 3.4E-05 39.9 8.3 67 260-343 54-120 (143)
283 cd00952 CHBPH_aldolase Trans-o 90.5 1.9 4E-05 43.9 10.0 94 263-398 36-133 (309)
284 PLN02898 HMP-P kinase/thiamin- 90.1 1.2 2.6E-05 48.2 8.7 75 260-349 401-479 (502)
285 COG0269 SgbH 3-hexulose-6-phos 90.0 6 0.00013 38.5 12.3 104 229-349 92-196 (217)
286 TIGR00683 nanA N-acetylneurami 89.8 2.5 5.5E-05 42.5 10.2 75 264-350 29-108 (290)
287 PRK07114 keto-hydroxyglutarate 89.6 2.1 4.6E-05 41.7 9.1 89 234-353 55-153 (222)
288 PRK06852 aldolase; Validated 89.6 3.5 7.6E-05 42.1 11.0 70 261-348 193-268 (304)
289 PRK03512 thiamine-phosphate py 89.4 1.8 3.8E-05 41.7 8.4 77 260-350 113-191 (211)
290 PRK00230 orotidine 5'-phosphat 89.3 3.5 7.7E-05 40.1 10.5 46 234-280 44-91 (230)
291 TIGR01303 IMP_DH_rel_1 IMP deh 89.3 1.1 2.4E-05 48.5 7.5 68 260-346 228-295 (475)
292 PRK03903 transaldolase; Provis 89.0 12 0.00026 37.7 14.1 56 297-352 158-217 (274)
293 PRK04147 N-acetylneuraminate l 88.8 3.2 6.9E-05 41.7 10.1 94 263-398 31-129 (293)
294 PRK12376 putative translaldola 88.7 13 0.00028 36.6 13.9 59 290-352 148-206 (236)
295 PRK09250 fructose-bisphosphate 88.7 4.9 0.00011 41.7 11.4 83 262-348 223-321 (348)
296 COG0329 DapA Dihydrodipicolina 88.6 2.3 5.1E-05 43.1 9.0 96 263-400 32-131 (299)
297 COG1908 FrhD Coenzyme F420-red 88.6 1 2.3E-05 39.8 5.5 42 317-372 33-74 (132)
298 PRK14057 epimerase; Provisiona 88.5 5.9 0.00013 39.5 11.4 103 232-348 112-224 (254)
299 TIGR02129 hisA_euk phosphoribo 88.5 0.66 1.4E-05 46.1 4.8 48 296-350 188-237 (253)
300 PRK05567 inosine 5'-monophosph 88.4 1.2 2.6E-05 48.1 7.2 67 260-345 231-297 (486)
301 PRK05458 guanosine 5'-monophos 88.4 3.4 7.3E-05 42.6 10.0 95 228-345 70-168 (326)
302 cd00954 NAL N-Acetylneuraminic 88.2 3.9 8.5E-05 40.9 10.3 91 263-398 28-126 (288)
303 PF00682 HMGL-like: HMGL-like 88.1 3.1 6.7E-05 40.0 9.1 58 227-284 163-223 (237)
304 PRK13957 indole-3-glycerol-pho 88.0 1.1 2.3E-05 44.5 5.9 71 258-347 63-133 (247)
305 TIGR03249 KdgD 5-dehydro-4-deo 87.9 3.8 8.3E-05 41.2 10.1 72 263-350 33-111 (296)
306 COG0176 MipB Transaldolase [Ca 87.9 23 0.0005 35.0 15.0 132 207-352 55-207 (239)
307 PRK01130 N-acetylmannosamine-6 87.7 5.6 0.00012 38.0 10.6 93 234-345 46-146 (221)
308 PRK06801 hypothetical protein; 87.7 9.6 0.00021 38.6 12.6 76 261-352 160-240 (286)
309 TIGR00674 dapA dihydrodipicoli 87.5 5 0.00011 40.0 10.5 73 263-350 26-105 (285)
310 PF00834 Ribul_P_3_epim: Ribul 87.4 1.5 3.2E-05 42.0 6.4 105 231-348 93-197 (201)
311 cd04729 NanE N-acetylmannosami 87.4 4.2 9.1E-05 38.9 9.5 91 235-344 51-149 (219)
312 cd00950 DHDPS Dihydrodipicolin 87.3 5.1 0.00011 39.8 10.4 73 263-350 28-107 (284)
313 TIGR01501 MthylAspMutase methy 87.0 5.2 0.00011 36.0 9.2 73 258-346 41-118 (134)
314 PRK08005 epimerase; Validated 86.9 9.2 0.0002 37.0 11.5 99 232-348 95-194 (210)
315 PF02662 FlpD: Methyl-viologen 86.6 1.7 3.7E-05 38.5 5.8 37 317-367 32-68 (124)
316 cd02071 MM_CoA_mut_B12_BD meth 86.6 6.2 0.00013 34.3 9.4 69 258-343 39-107 (122)
317 KOG1799|consensus 86.5 0.8 1.7E-05 47.3 4.1 70 316-422 356-425 (471)
318 COG1646 Predicted phosphate-bi 86.4 0.63 1.4E-05 45.6 3.2 33 316-348 191-223 (240)
319 PRK06806 fructose-bisphosphate 86.3 13 0.00028 37.5 12.7 78 261-352 157-237 (281)
320 PRK05437 isopentenyl pyrophosp 86.2 6.2 0.00013 41.0 10.6 106 232-346 107-218 (352)
321 cd04730 NPD_like 2-Nitropropan 86.0 14 0.0003 35.3 12.4 90 228-345 37-129 (236)
322 PRK07455 keto-hydroxyglutarate 85.7 6.8 0.00015 36.9 9.8 81 233-344 51-131 (187)
323 PF00701 DHDPS: Dihydrodipicol 85.5 3.7 8.1E-05 40.9 8.4 74 262-350 28-108 (289)
324 cd04743 NPD_PKS 2-Nitropropane 85.3 8 0.00017 39.8 10.7 89 228-344 38-129 (320)
325 PRK04180 pyridoxal biosynthesi 85.1 5.9 0.00013 40.2 9.4 84 234-344 64-147 (293)
326 cd07940 DRE_TIM_IPMS 2-isoprop 85.0 6.4 0.00014 39.0 9.7 58 226-283 168-230 (268)
327 PRK09426 methylmalonyl-CoA mut 85.0 10 0.00022 43.2 12.4 66 261-343 625-690 (714)
328 COG0036 Rpe Pentose-5-phosphat 84.9 9.2 0.0002 37.3 10.4 99 232-347 98-199 (220)
329 KOG2334|consensus 84.3 17 0.00036 38.8 12.6 113 227-354 132-251 (477)
330 cd00377 ICL_PEPM Members of th 84.2 14 0.0003 36.3 11.6 118 224-347 49-182 (243)
331 PRK12290 thiE thiamine-phospha 83.6 5.3 0.00011 42.8 8.8 83 260-350 311-397 (437)
332 cd04739 DHOD_like Dihydroorota 83.6 18 0.00039 37.1 12.5 109 228-347 83-197 (325)
333 PRK03170 dihydrodipicolinate s 83.3 9.3 0.0002 38.2 10.2 91 263-398 29-126 (292)
334 KOG3111|consensus 83.0 15 0.00032 35.4 10.6 100 231-351 100-203 (224)
335 cd00945 Aldolase_Class_I Class 82.6 14 0.00031 33.6 10.4 63 262-350 19-90 (201)
336 COG0800 Eda 2-keto-3-deoxy-6-p 82.6 3.7 7.9E-05 39.8 6.5 107 232-372 51-164 (211)
337 PRK13307 bifunctional formalde 82.5 15 0.00032 38.9 11.6 91 234-346 215-307 (391)
338 COG0135 TrpF Phosphoribosylant 82.5 5 0.00011 38.8 7.5 92 234-347 88-185 (208)
339 COG0352 ThiE Thiamine monophos 82.4 5.4 0.00012 38.6 7.7 82 232-348 53-134 (211)
340 TIGR03151 enACPred_II putative 82.4 16 0.00035 37.2 11.6 89 228-344 46-135 (307)
341 PTZ00411 transaldolase-like pr 82.2 19 0.00041 37.4 11.9 108 234-353 151-263 (333)
342 cd03174 DRE_TIM_metallolyase D 82.1 7 0.00015 37.9 8.6 58 227-284 172-232 (265)
343 PF04131 NanE: Putative N-acet 81.6 4.6 9.9E-05 38.5 6.7 88 234-343 22-117 (192)
344 PRK09517 multifunctional thiam 81.6 3.5 7.6E-05 47.1 7.1 69 269-349 128-198 (755)
345 cd00439 Transaldolase Transald 81.6 17 0.00037 36.1 11.0 110 228-352 98-241 (252)
346 PRK00278 trpC indole-3-glycero 81.1 14 0.0003 36.7 10.3 87 234-345 101-187 (260)
347 TIGR00343 pyridoxal 5'-phospha 80.9 13 0.00029 37.6 10.0 83 234-343 57-139 (287)
348 cd02922 FCB2_FMN Flavocytochro 80.6 16 0.00035 37.9 10.9 30 316-346 213-242 (344)
349 TIGR01182 eda Entner-Doudoroff 80.3 6 0.00013 38.1 7.2 88 234-349 92-180 (204)
350 PRK07315 fructose-bisphosphate 80.3 37 0.00081 34.4 13.3 78 260-351 157-238 (293)
351 KOG4201|consensus 80.2 18 0.00039 35.4 10.2 81 255-351 192-272 (289)
352 PRK02261 methylaspartate mutas 80.2 15 0.00033 32.9 9.3 73 258-346 43-120 (137)
353 PRK07114 keto-hydroxyglutarate 80.1 4.7 0.0001 39.3 6.5 88 234-348 103-191 (222)
354 TIGR02370 pyl_corrinoid methyl 79.7 10 0.00022 36.0 8.5 69 257-343 123-191 (197)
355 TIGR01163 rpe ribulose-phospha 79.1 20 0.00044 33.4 10.4 87 234-346 46-134 (210)
356 cd02809 alpha_hydroxyacid_oxid 78.9 18 0.00039 36.4 10.5 90 237-345 108-200 (299)
357 COG1830 FbaB DhnA-type fructos 78.8 6.2 0.00014 39.5 6.9 64 261-348 171-240 (265)
358 cd07938 DRE_TIM_HMGL 3-hydroxy 78.7 14 0.00029 37.1 9.4 54 226-279 174-230 (274)
359 cd02067 B12-binding B12 bindin 78.5 41 0.00088 28.6 11.4 93 235-346 18-110 (119)
360 PLN02623 pyruvate kinase 78.1 51 0.0011 36.7 14.2 105 227-346 301-418 (581)
361 cd04727 pdxS PdxS is a subunit 78.0 17 0.00038 36.7 9.8 83 234-343 55-137 (283)
362 cd02811 IDI-2_FMN Isopentenyl- 77.7 16 0.00034 37.5 9.7 100 234-346 101-210 (326)
363 TIGR00222 panB 3-methyl-2-oxob 77.6 25 0.00054 35.3 10.8 50 228-277 59-114 (263)
364 PRK12346 transaldolase A; Prov 77.4 34 0.00073 35.3 11.9 109 234-354 140-253 (316)
365 cd07941 DRE_TIM_LeuA3 Desulfob 77.2 6.1 0.00013 39.4 6.4 60 226-285 176-238 (273)
366 PF03437 BtpA: BtpA family; I 77.1 7.1 0.00015 38.9 6.8 77 260-345 33-110 (254)
367 cd04740 DHOD_1B_like Dihydroor 76.8 43 0.00094 33.4 12.5 105 229-344 74-185 (296)
368 cd07939 DRE_TIM_NifV Streptomy 76.6 16 0.00035 35.9 9.3 57 226-283 164-223 (259)
369 PRK05692 hydroxymethylglutaryl 76.4 16 0.00034 36.9 9.2 55 226-280 180-237 (287)
370 PRK08318 dihydropyrimidine deh 75.9 39 0.00085 35.7 12.5 105 229-344 83-199 (420)
371 cd07945 DRE_TIM_CMS Leptospira 75.8 9.5 0.00021 38.3 7.4 59 226-284 172-233 (280)
372 TIGR01108 oadA oxaloacetate de 75.1 12 0.00027 41.5 8.7 62 225-287 173-237 (582)
373 PRK07107 inosine 5-monophospha 75.1 12 0.00025 41.0 8.4 68 260-345 245-312 (502)
374 cd07937 DRE_TIM_PC_TC_5S Pyruv 75.0 16 0.00034 36.6 8.7 58 226-284 174-234 (275)
375 PRK08185 hypothetical protein; 74.9 62 0.0014 32.7 13.0 81 261-352 153-235 (283)
376 cd02070 corrinoid_protein_B12- 74.6 21 0.00045 33.8 9.0 69 258-344 122-190 (201)
377 PRK07259 dihydroorotate dehydr 74.4 37 0.0008 34.0 11.3 102 229-344 76-188 (301)
378 cd07943 DRE_TIM_HOA 4-hydroxy- 74.1 10 0.00023 37.3 7.2 59 226-284 166-227 (263)
379 PF09370 TIM-br_sig_trns: TIM- 73.8 4.4 9.6E-05 40.5 4.4 101 235-342 3-112 (268)
380 TIGR03217 4OH_2_O_val_ald 4-hy 73.7 22 0.00048 36.6 9.6 82 260-347 28-109 (333)
381 PLN02363 phosphoribosylanthran 73.6 41 0.0009 33.5 11.2 114 234-396 135-253 (256)
382 PRK07807 inosine 5-monophospha 73.3 14 0.0003 40.2 8.3 67 260-345 230-296 (479)
383 PRK13397 3-deoxy-7-phosphohept 72.8 38 0.00082 33.7 10.6 99 234-348 113-222 (250)
384 PRK07998 gatY putative fructos 71.5 53 0.0012 33.3 11.5 115 264-410 161-278 (283)
385 PRK12330 oxaloacetate decarbox 71.0 19 0.00042 39.3 8.8 60 225-284 179-242 (499)
386 cd04742 NPD_FabD 2-Nitropropan 70.7 51 0.0011 35.2 11.7 51 228-278 49-104 (418)
387 PRK05269 transaldolase B; Prov 70.7 60 0.0013 33.4 11.9 99 235-353 142-253 (318)
388 TIGR00259 thylakoid_BtpA membr 70.4 14 0.00031 36.8 7.1 76 260-344 32-108 (257)
389 cd00953 KDG_aldolase KDG (2-ke 70.2 35 0.00075 34.1 9.9 91 263-396 27-120 (279)
390 cd06556 ICL_KPHMT Members of t 69.9 42 0.00091 33.1 10.2 54 225-278 53-111 (240)
391 PF03060 NMO: Nitronate monoox 69.5 55 0.0012 33.5 11.4 90 228-344 46-162 (330)
392 TIGR02320 PEP_mutase phosphoen 69.4 1.2E+02 0.0025 30.8 13.5 109 226-352 131-247 (285)
393 cd00957 Transaldolase_TalAB Tr 69.3 60 0.0013 33.3 11.5 99 235-353 140-251 (313)
394 PRK13305 sgbH 3-keto-L-gulonat 69.2 38 0.00082 32.9 9.6 91 234-347 45-138 (218)
395 cd07944 DRE_TIM_HOA_like 4-hyd 69.0 23 0.00051 35.2 8.4 57 227-283 164-224 (266)
396 PRK06512 thiamine-phosphate py 68.8 27 0.00058 33.9 8.5 84 230-347 54-140 (221)
397 PF04309 G3P_antiterm: Glycero 68.4 2.5 5.4E-05 39.8 1.2 35 316-350 140-174 (175)
398 TIGR02151 IPP_isom_2 isopenten 68.3 68 0.0015 33.0 11.8 99 235-346 103-211 (333)
399 smart00052 EAL Putative diguan 68.2 49 0.0011 30.9 10.1 94 231-343 134-229 (241)
400 TIGR00874 talAB transaldolase. 68.2 1.5E+02 0.0033 30.5 14.5 101 235-353 140-251 (317)
401 PRK12858 tagatose 1,6-diphosph 68.1 41 0.00089 34.9 10.1 33 316-349 241-280 (340)
402 COG0434 SgcQ Predicted TIM-bar 67.4 12 0.00025 37.2 5.6 63 265-348 173-235 (263)
403 PLN02460 indole-3-glycerol-pho 67.3 28 0.00061 36.2 8.7 89 235-344 121-209 (338)
404 TIGR02319 CPEP_Pphonmut carbox 67.1 1.3E+02 0.0027 30.7 13.2 105 226-352 128-240 (294)
405 KOG0399|consensus 66.6 23 0.0005 42.4 8.4 131 261-413 683-814 (2142)
406 PRK08195 4-hyroxy-2-oxovalerat 66.1 1.1E+02 0.0023 31.7 12.7 95 234-345 66-164 (337)
407 cd02810 DHOD_DHPD_FMN Dihydroo 65.4 1.3E+02 0.0029 29.7 13.0 110 228-346 81-197 (289)
408 cd02940 DHPD_FMN Dihydropyrimi 65.0 93 0.002 31.3 11.9 112 229-348 83-203 (299)
409 COG0434 SgcQ Predicted TIM-bar 64.4 27 0.00058 34.7 7.4 75 260-343 38-113 (263)
410 PF02581 TMP-TENI: Thiamine mo 63.4 30 0.00065 32.0 7.4 98 230-370 39-139 (180)
411 cd04737 LOX_like_FMN L-Lactate 62.9 1E+02 0.0022 32.2 11.8 29 316-345 221-249 (351)
412 PRK02615 thiamine-phosphate py 62.3 32 0.00069 35.8 8.0 81 233-348 190-270 (347)
413 PRK07709 fructose-bisphosphate 62.0 1.8E+02 0.0039 29.5 13.2 109 265-410 165-282 (285)
414 cd00429 RPE Ribulose-5-phospha 61.9 95 0.0021 28.7 10.7 89 234-346 47-135 (211)
415 TIGR01859 fruc_bis_ald_ fructo 61.6 99 0.0021 31.2 11.2 104 229-348 58-178 (282)
416 cd03174 DRE_TIM_metallolyase D 61.4 1.6E+02 0.0034 28.4 12.7 106 232-345 53-166 (265)
417 PRK08227 autoinducer 2 aldolas 61.2 29 0.00063 34.8 7.3 90 242-345 71-178 (264)
418 TIGR00693 thiE thiamine-phosph 60.9 49 0.0011 30.6 8.5 83 231-348 41-126 (196)
419 KOG2333|consensus 60.9 46 0.00099 36.3 8.9 106 230-350 375-490 (614)
420 PRK14040 oxaloacetate decarbox 60.8 20 0.00043 40.0 6.6 62 225-287 179-243 (593)
421 PRK14041 oxaloacetate decarbox 60.1 46 0.00099 36.1 9.0 58 225-283 177-237 (467)
422 TIGR02708 L_lactate_ox L-lacta 59.9 1.2E+02 0.0026 31.9 11.8 30 316-346 228-257 (367)
423 cd06556 ICL_KPHMT Members of t 59.6 20 0.00044 35.3 5.8 79 259-344 22-108 (240)
424 TIGR02090 LEU1_arch isopropylm 59.3 48 0.001 34.5 8.8 58 227-285 167-227 (363)
425 PRK14725 pyruvate kinase; Prov 59.2 1E+02 0.0022 34.6 11.6 101 227-345 454-574 (608)
426 PRK12331 oxaloacetate decarbox 58.8 24 0.00051 38.0 6.6 58 225-283 178-238 (448)
427 PRK09136 5'-methylthioadenosin 58.8 1.3E+02 0.0028 29.7 11.3 52 301-352 136-191 (245)
428 PRK11320 prpB 2-methylisocitra 58.5 2.1E+02 0.0045 29.1 13.0 102 226-352 129-241 (292)
429 TIGR02320 PEP_mutase phosphoen 58.4 1.7E+02 0.0038 29.5 12.4 108 226-345 60-189 (285)
430 PRK05835 fructose-bisphosphate 58.2 1.9E+02 0.0041 29.8 12.6 75 265-352 164-262 (307)
431 COG2200 Rtn c-di-GMP phosphodi 58.1 86 0.0019 30.8 10.0 102 228-347 134-239 (256)
432 PF03932 CutC: CutC family; I 58.0 39 0.00084 32.5 7.3 70 258-346 9-93 (201)
433 cd04725 OMP_decarboxylase_like 57.8 96 0.0021 29.7 10.0 33 319-351 165-206 (216)
434 TIGR02660 nifV_homocitr homoci 57.8 33 0.00071 35.7 7.3 59 226-285 167-228 (365)
435 cd00564 TMP_TenI Thiamine mono 57.5 58 0.0012 29.5 8.2 25 323-347 100-124 (196)
436 PRK02227 hypothetical protein; 57.2 99 0.0021 30.6 10.0 100 235-347 41-153 (238)
437 cd04722 TIM_phosphate_binding 56.9 99 0.0021 27.5 9.6 95 235-347 48-145 (200)
438 cd07937 DRE_TIM_PC_TC_5S Pyruv 56.6 2E+02 0.0044 28.6 12.5 96 234-345 59-169 (275)
439 PF03740 PdxJ: Pyridoxal phosp 56.6 1.5E+02 0.0032 29.4 11.1 49 297-350 109-157 (239)
440 TIGR02317 prpB methylisocitrat 56.2 2.3E+02 0.005 28.7 12.9 102 226-352 124-236 (285)
441 PRK09140 2-dehydro-3-deoxy-6-p 56.0 67 0.0014 30.8 8.6 67 259-346 25-91 (206)
442 PRK06015 keto-hydroxyglutarate 55.9 50 0.0011 31.8 7.6 87 234-348 88-175 (201)
443 TIGR03217 4OH_2_O_val_ald 4-hy 55.3 35 0.00075 35.2 6.9 58 227-284 169-230 (333)
444 PRK08195 4-hyroxy-2-oxovalerat 55.3 70 0.0015 33.1 9.1 80 261-346 30-109 (337)
445 PF00218 IGPS: Indole-3-glycer 55.1 8.6 0.00019 38.3 2.3 74 257-349 69-142 (254)
446 cd00408 DHDPS-like Dihydrodipi 54.9 2.2E+02 0.0047 28.0 14.2 49 228-276 48-99 (281)
447 TIGR00977 LeuA_rel 2-isopropyl 54.8 37 0.00079 37.4 7.3 62 226-287 179-243 (526)
448 PRK14042 pyruvate carboxylase 54.7 27 0.0006 39.0 6.4 58 225-283 178-238 (596)
449 cd02932 OYE_YqiM_FMN Old yello 54.7 1E+02 0.0022 31.5 10.2 87 258-345 156-261 (336)
450 PTZ00300 pyruvate kinase; Prov 54.7 89 0.0019 33.8 10.0 104 226-344 169-285 (454)
451 PRK00915 2-isopropylmalate syn 54.1 41 0.00089 36.8 7.6 62 226-287 174-241 (513)
452 cd07948 DRE_TIM_HCS Saccharomy 54.0 40 0.00086 33.6 6.9 57 226-283 166-225 (262)
453 PRK14567 triosephosphate isome 53.9 33 0.00071 34.2 6.2 53 297-350 177-236 (253)
454 PRK12581 oxaloacetate decarbox 53.7 34 0.00073 37.1 6.7 57 225-282 187-246 (468)
455 cd04728 ThiG Thiazole synthase 53.6 28 0.00061 34.6 5.6 40 234-276 165-204 (248)
456 TIGR01064 pyruv_kin pyruvate k 53.5 1.1E+02 0.0023 33.3 10.5 106 226-346 193-312 (473)
457 TIGR00559 pdxJ pyridoxine 5'-p 53.1 2E+02 0.0042 28.6 11.3 48 297-349 108-155 (237)
458 cd00288 Pyruvate_Kinase Pyruva 53.0 1E+02 0.0023 33.5 10.3 103 227-344 197-312 (480)
459 PRK02227 hypothetical protein; 52.8 51 0.0011 32.6 7.2 74 258-346 9-88 (238)
460 PRK05826 pyruvate kinase; Prov 52.5 1E+02 0.0023 33.4 10.2 105 226-345 195-313 (465)
461 PLN02746 hydroxymethylglutaryl 52.5 84 0.0018 32.8 9.2 67 214-280 210-279 (347)
462 PRK13397 3-deoxy-7-phosphohept 52.3 1.7E+02 0.0037 29.2 10.9 44 234-278 174-221 (250)
463 cd00377 ICL_PEPM Members of th 52.1 38 0.00082 33.3 6.3 79 258-344 18-103 (243)
464 COG1570 XseA Exonuclease VII, 51.9 37 0.00081 36.5 6.6 83 230-327 147-236 (440)
465 cd00311 TIM Triosephosphate is 51.7 23 0.00051 34.9 4.8 35 315-350 198-233 (242)
466 PRK09427 bifunctional indole-3 51.6 44 0.00096 36.1 7.2 83 235-344 199-283 (454)
467 PRK13111 trpA tryptophan synth 51.5 1.2E+02 0.0025 30.3 9.7 93 228-344 72-171 (258)
468 cd07947 DRE_TIM_Re_CS Clostrid 51.5 69 0.0015 32.2 8.2 55 229-283 185-244 (279)
469 PF09370 TIM-br_sig_trns: TIM- 51.5 55 0.0012 32.9 7.3 87 258-348 159-249 (268)
470 COG0826 Collagenase and relate 51.5 73 0.0016 33.2 8.5 89 256-352 13-106 (347)
471 PRK11572 copper homeostasis pr 51.4 60 0.0013 32.3 7.6 71 257-346 9-94 (248)
472 PRK13753 dihydropteroate synth 51.4 91 0.002 31.6 9.0 68 262-343 31-101 (279)
473 COG0745 OmpR Response regulato 51.1 1.5E+02 0.0032 28.8 10.2 68 259-344 33-100 (229)
474 PF04476 DUF556: Protein of un 51.0 97 0.0021 30.6 8.8 74 258-346 9-88 (235)
475 PRK00208 thiG thiazole synthas 51.0 35 0.00077 33.9 5.8 40 234-276 165-204 (250)
476 PRK13059 putative lipid kinase 51.0 1.4E+02 0.003 29.9 10.3 82 231-337 20-102 (295)
477 cd00622 PLPDE_III_ODC Type III 50.9 1.4E+02 0.003 30.6 10.5 92 227-347 7-100 (362)
478 PRK12344 putative alpha-isopro 50.8 44 0.00094 36.7 7.1 62 225-287 182-246 (524)
479 PRK09282 pyruvate carboxylase 50.5 38 0.00082 37.8 6.7 59 226-285 179-240 (592)
480 PRK05581 ribulose-phosphate 3- 50.5 1.9E+02 0.0041 27.1 10.8 89 234-346 51-139 (220)
481 PRK11613 folP dihydropteroate 50.5 85 0.0018 31.8 8.6 68 262-342 44-114 (282)
482 COG5016 Pyruvate/oxaloacetate 50.5 48 0.001 35.4 7.0 56 228-284 183-241 (472)
483 PRK06739 pyruvate kinase; Vali 50.4 2.2E+02 0.0048 29.8 11.9 102 227-346 188-306 (352)
484 TIGR01361 DAHP_synth_Bsub phos 50.0 1.6E+02 0.0035 29.2 10.5 101 234-348 123-232 (260)
485 PF01081 Aldolase: KDPG and KH 49.4 96 0.0021 29.7 8.4 64 259-344 23-86 (196)
486 PRK11858 aksA trans-homoaconit 49.3 49 0.0011 34.6 7.0 60 226-286 170-232 (378)
487 PRK00043 thiE thiamine-phospha 48.9 1E+02 0.0022 28.7 8.5 22 325-346 111-132 (212)
488 TIGR03239 GarL 2-dehydro-3-deo 48.9 1.1E+02 0.0023 30.3 9.0 71 257-345 21-91 (249)
489 PRK01222 N-(5'-phosphoribosyl) 48.7 1.3E+02 0.0029 28.7 9.4 93 234-348 90-186 (210)
490 PRK06852 aldolase; Validated 48.1 49 0.0011 33.9 6.5 93 239-345 86-208 (304)
491 PRK08673 3-deoxy-7-phosphohept 48.1 1.4E+02 0.0031 31.0 10.0 100 235-348 192-300 (335)
492 PRK10558 alpha-dehydro-beta-de 48.0 2.9E+02 0.0063 27.4 13.3 95 239-346 139-238 (256)
493 PRK13398 3-deoxy-7-phosphohept 47.8 2.4E+02 0.0052 28.2 11.3 33 316-348 196-234 (266)
494 PRK00112 tgt queuine tRNA-ribo 47.5 77 0.0017 33.2 8.0 74 261-350 200-273 (366)
495 TIGR00419 tim triosephosphate 47.5 27 0.00058 33.7 4.3 52 298-349 150-202 (205)
496 PF02601 Exonuc_VII_L: Exonucl 47.4 71 0.0015 32.3 7.7 80 231-325 27-116 (319)
497 PRK12309 transaldolase/EF-hand 47.4 2.6E+02 0.0057 29.7 12.0 106 234-354 145-258 (391)
498 COG1954 GlpP Glycerol-3-phosph 47.1 24 0.00053 33.2 3.8 30 315-344 143-172 (181)
499 TIGR02153 gatD_arch glutamyl-t 47.1 1.4E+02 0.0031 31.8 10.0 32 248-281 279-311 (404)
500 PRK09206 pyruvate kinase; Prov 47.1 2.5E+02 0.0054 30.6 12.0 103 227-344 195-311 (470)
No 1
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-99 Score=784.84 Aligned_cols=388 Identities=58% Similarity=0.862 Sum_probs=373.5
Q ss_pred CCCccceeeecCCcccccchhh-HHHHHHHh-cCCHHHHHHHHHHhhhccCccccccccccccCCC-CCCCCCCcccccc
Q psy10999 1 INKHYYYYFYKSITGLISKPFS-TDFQEAAS-NNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDK-PVDISEVEPAAEI 77 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~v~~~~~i 77 (447)
++.+|+|+||+.||+|.|+|.+ ..+|.+++ +++|..|++|+..+++.. ..++|++++|++..+ ++++++|+|..++
T Consensus 87 ~~~~G~~~~r~~ge~h~~~p~~~~~~q~a~~~~~~~~~~~~~~~~i~~~~-~~~~r~~~d~~~~~~~~i~~~~vep~~~i 165 (485)
T COG0069 87 LDVGGFGTERDGGEPHFYDPDTLFALQVATRSEGGYREYKEYSVLIGTRA-STTLRDLLDFIADGSKPIPIEEVEPVLEL 165 (485)
T ss_pred ccccCcceecccCCCccCCHHHHhHhhhcccccCchHHHHHHHHHhhccc-chhhhhhhhhcccccccccccccccccee
Confidence 3567999999999999999999 99999999 789999999999998764 556999999998766 8999999999999
Q ss_pred ccceeecCCCcccCcHHHHHHHHHHHHHhCCceeecCCCCChhhhhccCCCCCCCeEEeCCCCccccccccceeeccccc
Q psy10999 78 VKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQGKLYPKTYCFLSSLFTDLFPV 157 (447)
Q Consensus 78 ~~Pf~iaaMs~G~ls~ea~~aLA~AA~~~G~~~~sGeg~~~~e~~~~~~~~~~~~~i~Q~~ly~~~~~~~~lv~t~d~p~ 157 (447)
.+||.+++||||++|+++|++||+||+++|+.+||||||++++++. ...+.|+|
T Consensus 166 ~~~~~~~aMS~GAlS~eA~~alA~a~~~~G~~sntGEGGe~~~~~~-----~~~s~I~Q--------------------- 219 (485)
T COG0069 166 KKRFVTGAMSFGALSKEAHEALARAMNRIGTKSNTGEGGEDPERYE-----DGRSAIKQ--------------------- 219 (485)
T ss_pred eecccccccCCccccHHHHHHHHHHHHHhcCcccCCCCCCCHHHhc-----cccceEEE---------------------
Confidence 9999999999999999999999999999999999999999999972 45789999
Q ss_pred cccccccCCCCCChHhhccccccccccccccCCCCCCCCCCCcccHHHHhhcCCCCcccccCCCCCCCCCCHHHHHHHHH
Q psy10999 158 YGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIY 237 (447)
Q Consensus 158 ~~~rv~s~rfGv~~~~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~~~~g~~lisp~~~~~~~s~edl~~~I~ 237 (447)
++|+||||+.+||.++++||||++||||||+||+||+.||+++|+++|+++||+++|||++||||||+|||+|+|+
T Consensus 220 ----vaSGRFGV~~~yL~~a~~ieIKiaQGAKPGeGG~Lpg~KV~~~IA~~R~~~pG~~~ISP~pHHDiysieDLaqlI~ 295 (485)
T COG0069 220 ----VASGRFGVTPEYLANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIEDLAQLIK 295 (485)
T ss_pred ----eccccCccCHHHhCccceEEEEeccCCCCCCCCCCCCccCCHHHHHhcCCCCCCCCcCCCCcccccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCce
Q psy10999 238 DLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRV 317 (447)
Q Consensus 238 ~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v 317 (447)
+||++||.++|.||++++++++++|.++++++||+|+|||++||||++|+++++|+|+||+.+|++++|+|.++|+|++|
T Consensus 296 dLk~~~~~~~I~VKlva~~~v~~iaagvakA~AD~I~IdG~~GGTGAsP~~~~~~~GiP~e~glae~~q~L~~~glRd~v 375 (485)
T COG0069 296 DLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSIDHAGIPWELGLAETHQTLVLNGLRDKV 375 (485)
T ss_pred HHHhcCCCCeEEEEEecccchHHHHhhhhhccCCEEEEcCCCCcCCCCcHhHhhcCCchHHHHHHHHHHHHHHcCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhh--cCCcHHHHHHHHHHHH
Q psy10999 318 VLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKK--FAGKPEHVINYLFMLA 395 (447)
Q Consensus 318 ~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~--~~~g~~~V~~~l~~l~ 395 (447)
.|++||||+|+.||+||++||||+|.+||++|+++||.|||+||+|+||+||+||||+||++ |.+++++|+||+..++
T Consensus 376 ~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~a 455 (485)
T COG0069 376 KLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVA 455 (485)
T ss_pred EEEecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999 7789999999999999
Q ss_pred HHHHHHHhhhCCCCCCccccc--ccccc
Q psy10999 396 EEVSRDYRAESPGFDFPLVWL--GDFKQ 421 (447)
Q Consensus 396 ~Elr~~M~l~~~G~~s~~~l~--~~~~~ 421 (447)
+|++++|+. +|.+++.++. .++++
T Consensus 456 ~e~rella~--lG~~~l~el~g~~d~L~ 481 (485)
T COG0069 456 EELRELLAA--LGKRSLSELIGRTDLLR 481 (485)
T ss_pred HHHHHHHHH--hCCCCHHHHhcchhhhh
Confidence 999999999 9999999987 55554
No 2
>KOG0399|consensus
Probab=100.00 E-value=3.7e-98 Score=807.74 Aligned_cols=410 Identities=64% Similarity=1.013 Sum_probs=387.4
Q ss_pred CCCccceeeecCCcccccchhh-HHHHHHHhcCCHHHHHHHHHHhhhccCcccccccccccc-CCCCCCCCCCccccccc
Q psy10999 1 INKHYYYYFYKSITGLISKPFS-TDFQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVT-HDKPVDISEVEPAAEIV 78 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~~~~~~v~~~~~i~ 78 (447)
|++.|.||||.+||+|.++|.. +.||+|+|+++-.+|++|++..++..+.|+||+||+|++ ++-+||+++|||..+|.
T Consensus 875 L~n~G~~h~R~gGe~H~N~P~aia~Lq~AvR~kne~ay~~Ys~~~~~~~r~~tlRglLefk~s~~~~IPl~~VEPaseIv 954 (2142)
T KOG0399|consen 875 LPNSGFYHFRDGGEKHVNEPLAIAKLQDAVRNKNEAAYAEYSKQHNEARRWCTLRGLLEFKFSDSVPIPLEEVEPASEIV 954 (2142)
T ss_pred CCCCcceEecCCccccCCCHHHHHHHHHHHHhcchhHHHHHHHHHHhhCccchhhhhheeccccCCcCchhhcCcHHHHH
Confidence 5678999999999999999999 999999999999999999888888888999999999994 66799999999999999
Q ss_pred cceeecCCCcccCcHHHHHHHHHHHHHhCCceeecCCCCChhhhhccC-C-CCCCCeEEeCCCCccccccccceeecccc
Q psy10999 79 KRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSG-D-ENQRSAIKQGKLYPKTYCFLSSLFTDLFP 156 (447)
Q Consensus 79 ~Pf~iaaMs~G~ls~ea~~aLA~AA~~~G~~~~sGeg~~~~e~~~~~~-~-~~~~~~i~Q~~ly~~~~~~~~lv~t~d~p 156 (447)
.+|.+++||||++|.|+|.+||.|||++|.++||||||++|++..... . +..++.|+|
T Consensus 955 ~RFcTGaMS~GsIS~EtH~tlAIAMNRlGgKSNtGEGGEdp~R~~~l~d~~d~~rSAIKQ-------------------- 1014 (2142)
T KOG0399|consen 955 KRFCTGAMSYGSISMETHTTLAIAMNRLGGKSNTGEGGEDPERSKPLADGVDTMRSAIKQ-------------------- 1014 (2142)
T ss_pred HHHhcccccccccchhhHHHHHHHHHhhcCcCCCCCCCCChhhcccccccchHHHHHHHH--------------------
Confidence 999999999999999999999999999999999999999999976432 1 334678899
Q ss_pred ccccccccCCCCCChHhhccccccccccccccCCCCCCCCCCCcccHHHHhhcCCCCcccccCCCCCCCCCCHHHHHHHH
Q psy10999 157 VYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELI 236 (447)
Q Consensus 157 ~~~~rv~s~rfGv~~~~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~~~~g~~lisp~~~~~~~s~edl~~~I 236 (447)
|+|+||||++.||.|++.+||||+||||||+||+||++||+..||++||++||+.||||||||||||||||+|+|
T Consensus 1015 -----VASgRFGVTs~yL~nADeLqIKmAQGAKPGEGGeLPghKVs~dIA~tR~St~gVgLISPPPHHDIYSIEDLaQLI 1089 (2142)
T KOG0399|consen 1015 -----VASGRFGVTSYYLSNADELQIKMAQGAKPGEGGELPGHKVSADIAKTRHSTAGVGLISPPPHHDIYSIEDLAQLI 1089 (2142)
T ss_pred -----HhccccccchhhccCchhhhhHHhcCCCCCCCCCCCcchhhHHHHHhccCCCCCCcCCCCCccccccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCc
Q psy10999 237 YDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSR 316 (447)
Q Consensus 237 ~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~ 316 (447)
++|+.+||.++|+||+|+|+|++++|.+++++.||.|.||||+||||+++++.++++|+||+.+|+|.||+|..|++|.+
T Consensus 1090 yDLk~aNP~ArVSVKLVSEaGVGiVASGVaK~~ADhI~vSGhDGGTGAS~wt~IK~AGlPWELGlAEThQtLv~NdLR~r 1169 (2142)
T KOG0399|consen 1090 YDLKCANPRARVSVKLVSEAGVGIVASGVAKGNADHILVSGHDGGTGASRWTGIKHAGLPWELGLAETHQTLVLNDLRGR 1169 (2142)
T ss_pred HHhhccCCCceeEEEEEecccceeeeeccccccCceEEEeccCCCcCcccccccccCCCChhhcchhhhhHHhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHH
Q psy10999 317 VVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAE 396 (447)
Q Consensus 317 v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~ 396 (447)
|-|.+||+||||+||+.|.+||||.++|+|..|+++||+|+|+||+|+||||||||||+||++|++.+++|+|||-.+++
T Consensus 1170 vVlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~G~PehvVNff~yvaE 1249 (2142)
T KOG0399|consen 1170 VVLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFPGQPEHVVNFFFYVAE 1249 (2142)
T ss_pred EEEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhCCCCCCcccc--cccccccccccccccccccccccc
Q psy10999 397 EVSRDYRAESPGFDFPLVW--LGDFKQEGDQLSLVWGTLTMKVTS 439 (447)
Q Consensus 397 Elr~~M~l~~~G~~s~~~l--~~~~~~~~~~~~~~~~~~~~~~~~ 439 (447)
|+|.+|+. +|.+++.++ +.|++... .+.+=|+.-+|+|.
T Consensus 1250 EvR~imak--LGfrtldemvGrtdlLk~~--~di~~K~~~lDls~ 1290 (2142)
T KOG0399|consen 1250 EVRGIMAK--LGFRTLDEMVGRTDLLKAR--SDIVVKATNLDLSP 1290 (2142)
T ss_pred HHHHHHHH--hCcchHHHHhcchhhhccc--ccchhhheeechhh
Confidence 99999999 999997765 46666542 23346777777764
No 3
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=100.00 E-value=3.8e-95 Score=821.85 Aligned_cols=405 Identities=50% Similarity=0.776 Sum_probs=387.3
Q ss_pred CCCccceeeecCCcccccchhh-HHHHHHHhcCCHHHHHHHHHHhhhccCccccccccccccCCCCCCCCCCcccccccc
Q psy10999 1 INKHYYYYFYKSITGLISKPFS-TDFQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVK 79 (447)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~v~~~~~i~~ 79 (447)
|+.+|+|+||++||+|.|+|++ +.||+++++++|..|++|+...++. ++.+||+||.|+....++|++||+|+.+|..
T Consensus 781 L~~~g~~~~r~~ge~H~~~p~~i~~lq~a~~~g~~~~y~~y~~~~~~~-~~~~lr~ll~~~~~~~~~p~~eve~v~~I~~ 859 (1485)
T PRK11750 781 IDQGGLLKYVHGGEYHAYNPDVVNTLQKAVQSGDYSDYQEYAKLVNER-PVATLRDLLALKPADNPIPLDEVEPAEELFK 859 (1485)
T ss_pred CCCCCeeeeccCCcccccCHHHHHHHHHHHHcCCHHHHHHHHHHhccC-CCCCHHHHhcccCCCCCCCccccccHHHHhc
Confidence 5789999999999999999999 9999999999999999999999765 6679999999997667899999999999999
Q ss_pred ceeecCCCcccCcHHHHHHHHHHHHHhCCceeecCCCCChhhhhccCCCCCCCeEEeCCCCccccccccceeeccccccc
Q psy10999 80 RFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQGKLYPKTYCFLSSLFTDLFPVYG 159 (447)
Q Consensus 80 Pf~iaaMs~G~ls~ea~~aLA~AA~~~G~~~~sGeg~~~~e~~~~~~~~~~~~~i~Q~~ly~~~~~~~~lv~t~d~p~~~ 159 (447)
+|.+++||||++|++++++||+||+++|+.+||||||++|+++.. ...+.|+|
T Consensus 860 rf~~~aMSfGalS~eA~~aLA~a~~~~G~~sntGEGG~~p~~~~~----~~~~~i~Q----------------------- 912 (1485)
T PRK11750 860 RFDSAAMSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGT----EKVSKIKQ----------------------- 912 (1485)
T ss_pred ccccccCCCCccCHHHHHHHHHHHHHhCCceecCCCCCCHHHHhc----ccCCeEEE-----------------------
Confidence 999999999999999999999999999999999999999998632 34578999
Q ss_pred cccccCCCCCChHhhccccccccccccccCCCCCCCCCCCcccHHHHhhcCCCCcccccCCCCCCCCCCHHHHHHHHHHH
Q psy10999 160 LPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDL 239 (447)
Q Consensus 160 ~rv~s~rfGv~~~~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~~~~g~~lisp~~~~~~~s~edl~~~I~~L 239 (447)
++|+||||++++|.++++||||++||||||+||+||+.||+++||++|+++||++++||++||||||+|||+|+|++|
T Consensus 913 --iaSGrFGv~~e~l~~a~~ieIKi~QGAKPG~GG~Lpg~KV~~~IA~~R~~~~G~~liSP~phhdiySieDL~qlI~~L 990 (1485)
T PRK11750 913 --VASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPLIARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDL 990 (1485)
T ss_pred --ccCCcCCCCHHHhccCCEEEEEecCCCCCCCCCcCccccCCHHHHHHcCCCCCCCCCCCCCCccCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEE
Q psy10999 240 KCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVL 319 (447)
Q Consensus 240 r~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~v 319 (447)
|+.+|++||+||++++.|++++|..++++|||+|+|||++||||++|.++++|+|+||+.+|++++++|+++|+|++|.|
T Consensus 991 k~~~~~~~I~VKl~a~~~vg~ia~gvaka~aD~I~IdG~~GGTGAap~~~~~~~GlP~e~gL~~~~~~L~~~glR~rv~l 1070 (1485)
T PRK11750 991 KQVNPKALVSVKLVSEPGVGTIATGVAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRL 1070 (1485)
T ss_pred HHhCCCCcEEEEEccCCCccHHHhChhhcCCCEEEEeCCCCCcccccHHHHhhCCccHHHHHHHHHHHHHhcCCCcceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHh-hcCCcHHHHHHHHHHHHHHH
Q psy10999 320 QADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRK-KFAGKPEHVINYLFMLAEEV 398 (447)
Q Consensus 320 iadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~-~~~~g~~~V~~~l~~l~~El 398 (447)
++||||+||.||+||++||||+|++||++|+|+||+|||.||+|+|||||+||||+||+ .+.+++++|+|||..+.+|+
T Consensus 1071 ~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~~~~~~v~nf~~~~~~el 1150 (1485)
T PRK11750 1071 QVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGLPEMVMNYFEFIAEET 1150 (1485)
T ss_pred EEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 56778999999999999999
Q ss_pred HHHHhhhCCCCCCcccc--cccccccccccccccccccccccc
Q psy10999 399 SRDYRAESPGFDFPLVW--LGDFKQEGDQLSLVWGTLTMKVTS 439 (447)
Q Consensus 399 r~~M~l~~~G~~s~~~l--~~~~~~~~~~~~~~~~~~~~~~~~ 439 (447)
+++|+. +|.+++.++ +.|++...+... | |++.+|||.
T Consensus 1151 ~~~la~--lG~~s~~elvGr~dlL~~~~~~~-~-k~~~lDls~ 1189 (1485)
T PRK11750 1151 REWMAQ--LGVRSLEDLIGRTDLLEELEGET-A-KQQKLDLSP 1189 (1485)
T ss_pred HHHHHH--hCCCCHHHhcCchhccccccCch-h-hhcCCChhH
Confidence 999999 999999988 789988765533 6 999999986
No 4
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=100.00 E-value=3.7e-90 Score=702.77 Aligned_cols=363 Identities=49% Similarity=0.727 Sum_probs=281.6
Q ss_pred cccchhh-HHHHHHHhcCCHHHHHHHHHHhhhccCccccccccccccCCCC-CCCCCCccccccccceeecCCCcccCcH
Q psy10999 16 LISKPFS-TDFQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDKP-VDISEVEPAAEIVKRFATGAMSFGSISI 93 (447)
Q Consensus 16 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~~v~~~~~i~~Pf~iaaMs~G~ls~ 93 (447)
|.|+|.+ +.||+|++.++|..|++|.+.+++...+.++|++|+|+.++.. |..+++++..++..||+|++||||++|+
T Consensus 1 h~~~p~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~r~~L~~~~~~~~~i~~~~~~~p~~l~~p~~is~MS~GaLS~ 80 (368)
T PF01645_consen 1 HAYNPEVIKLLQKAVRVNSYESYKEYRERVNEREFPSALRDLLEFKYDEAPSIPGEKVEKPLELSIPFMISAMSYGALSE 80 (368)
T ss_dssp -SS-HHHHHHHHHHHHCT-HHHHHHHHHHHHTS--S-SGGGGEEE--SS-----GGGS--HHHHHTTEEEEEB-CTTC-H
T ss_pred CCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCccccCcccccccCCCCcCchhhcCChhhheeeeecccCChhhcCH
Confidence 8999999 9999999999999999999999887679999999999876554 8999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCceeecCCCCChhhhhccCCCCCCCe-EEeCCCCccccccccceeeccccccccccccCCCCCChH
Q psy10999 94 EAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSA-IKQGKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSS 172 (447)
Q Consensus 94 ea~~aLA~AA~~~G~~~~sGeg~~~~e~~~~~~~~~~~~~-i~Q~~ly~~~~~~~~lv~t~d~p~~~~rv~s~rfGv~~~ 172 (447)
+++++||+||+++|+.+|||||++++|++.. .... |+| ++++|||++++
T Consensus 81 ~a~~Ala~ga~~~G~~~ntGEGg~~~~~~~~-----~~~~~I~Q-------------------------~~sg~fGv~~~ 130 (368)
T PF01645_consen 81 EAKEALAKGANMAGTASNTGEGGELPEERKA-----AKDLRIKQ-------------------------IASGRFGVRPE 130 (368)
T ss_dssp HHHHHHHHHHHHCT-EEEETTT---GGGCSB------TTSSEEE-------------------------E-TT-TT--HH
T ss_pred HHHHHHHHHHHHhCceEecCCCCCCHHHhcc-----cCCceEEE-------------------------cCCCCCCCCHH
Confidence 9999999999999999999999999998642 2345 999 99999999999
Q ss_pred hhccccccccccccccCCCCCCCCCCCcccHHHHhhcCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEE
Q psy10999 173 YLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKL 252 (447)
Q Consensus 173 ~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~~~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKl 252 (447)
+|.++++||||++||||||+||+||+.||+++|+++|+++||++++||++||++||++||.++|++||+.+|++||+||+
T Consensus 131 ~l~~a~~iEIKigQGAKpG~GG~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl 210 (368)
T PF01645_consen 131 YLKQADMIEIKIGQGAKPGEGGHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKL 210 (368)
T ss_dssp HHCC-SEEEEE---TTSTTT--EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEE
T ss_pred HhcCCCeEEEEEecCccccCcceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHH
Q psy10999 253 VSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVV 332 (447)
Q Consensus 253 v~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~ 332 (447)
++..++.+++..+.++|+|+|+|||++||||++|..+++++|+||+.+|++++++|+++|+|++|.||++|||+|+.||+
T Consensus 211 ~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~ 290 (368)
T PF01645_consen 211 VAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVA 290 (368)
T ss_dssp E-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHH
T ss_pred CCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHH
Confidence 99888999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy10999 333 VAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKF--AGKPEHVINYLFMLAEEVSRDYRAESPGFD 410 (447)
Q Consensus 333 kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~--~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~ 410 (447)
||++||||+|+|||++|+|+||++||+||+|+||+||+||||+|++++ .+++++|.|||..+.+||+++|+. +|.+
T Consensus 291 kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~~~el~~~~~a--~G~~ 368 (368)
T PF01645_consen 291 KALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKACAEELREILAA--LGKR 368 (368)
T ss_dssp HHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHHHHHHHHHHHH--HT-S
T ss_pred HHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHHHHHHHHHHHH--hCCC
Confidence 999999999999999999999999999999999999999999999876 578999999999999999999999 8864
No 5
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=100.00 E-value=1e-68 Score=554.19 Aligned_cols=358 Identities=50% Similarity=0.719 Sum_probs=321.3
Q ss_pred cCCHHHHHHHHHHhhhcc-CccccccccccccCCCCCCCCC-------------CccccccccceeecCCCcccCcHHHH
Q psy10999 31 NNNKNAYDRFRESNMESV-KYSTLRGQLDFVTHDKPVDISE-------------VEPAAEIVKRFATGAMSFGSISIEAH 96 (447)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~-~~~~~r~~~~~~~~~~~~~~~~-------------v~~~~~i~~Pf~iaaMs~G~ls~ea~ 96 (447)
.+.+..|..|.+..+... ...+.|+++.|....-..++.+ ++....+..||++++||||++|++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~i~~Pi~~~~Ms~Gs~s~~a~ 95 (392)
T cd02808 16 FNRAERYGVYNRAGNSRGRPFGTLRDLLEFGAQLAKHPLEPDEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAK 95 (392)
T ss_pred cCcHHHHHHHHHhhcCCCCCCCChhhhhhcCcccccCCCCcccccccceeeccccCCccccccceEecCCCCCcccHHHH
Confidence 345688888888876532 4568999999976432333322 23346899999999999999999999
Q ss_pred HHHHHHHHHhCCceeecCCCCChhhhhccCCCCCCCeEEeCCCCccccccccceeeccccccccccccCCCCCChHhhcc
Q psy10999 97 TTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQGKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAH 176 (447)
Q Consensus 97 ~aLA~AA~~~G~~~~sGeg~~~~e~~~~~~~~~~~~~i~Q~~ly~~~~~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~ 176 (447)
.+||.||+++|+..++||+++++|++.. ....++| +.+++|||+.+++.+
T Consensus 96 ~aLa~aa~~aG~~~~~Gegg~~~~~~~~-----~~~~i~q-------------------------~~~~~fGv~~~~~~~ 145 (392)
T cd02808 96 EALAIGAALAGTASNTGEGGELPEEREG-----GGDIIKQ-------------------------VASGRFGVRPEYLNK 145 (392)
T ss_pred HHHHHHHHhcCCceeecCCCCCHHHHhh-----hhheEEE-------------------------ecCCCCccCHHHccc
Confidence 9999999999999999999999998642 4567899 999999999999999
Q ss_pred ccccccccccccCCCCCCCCCCCcccHHHHhhcCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeec
Q psy10999 177 ADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEV 256 (447)
Q Consensus 177 a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~~~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~ 256 (447)
+++||||++||||||.||+||+.||+.+||..||++++++++||++|++|++++++.+.|++||+.++++||+||++...
T Consensus 146 ~~~ieik~~QGAkpg~gg~l~~~Kv~~eiA~~r~~~~g~~~isp~~~~~~~~~~~l~~~I~~lr~~~~~~pV~vK~~~~~ 225 (392)
T cd02808 146 ADAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIEDLREATGGKPIGVKLVAGH 225 (392)
T ss_pred CcEEEEEeccCCCCCCCCccccccCCHHHHHHhCCCCCccccCCCCCCCCCCHHHHHHHHHHHHHhCCCceEEEEECCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999997789999988754
Q ss_pred cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 257 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 257 Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
...+.+..+...|+|+|+|||++||||+++..+++++|+|++.+|+++++++.+.++|+++|||++|||+|+.||+||++
T Consensus 226 ~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kala 305 (392)
T cd02808 226 GEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALA 305 (392)
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHH
Confidence 34555556666679999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhc--CCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccc
Q psy10999 337 LGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKF--AGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLV 414 (447)
Q Consensus 337 LGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~--~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~ 414 (447)
||||+|++||+||++++|.|+++||+|+||+||+||++.|++++ ..++++|.||++.|.+||+++|++ +|++++.+
T Consensus 306 LGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~~~el~~~m~~--~G~~~~~~ 383 (392)
T cd02808 306 LGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEELRELAAA--LGKRSLEL 383 (392)
T ss_pred cCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHHHHHHHHHHHH--hCCCChHH
Confidence 99999999999999999999999999999999999999998876 478999999999999999999999 99999998
Q ss_pred cccccc
Q psy10999 415 WLGDFK 420 (447)
Q Consensus 415 l~~~~~ 420 (447)
++++.+
T Consensus 384 l~~~~l 389 (392)
T cd02808 384 LGRSDL 389 (392)
T ss_pred CCHHHh
Confidence 876654
No 6
>KOG0538|consensus
Probab=100.00 E-value=1.8e-41 Score=331.00 Aligned_cols=283 Identities=18% Similarity=0.137 Sum_probs=218.5
Q ss_pred CCCCCCCccc-----cccccceeecCCCcccC-cHHHHHHHHHHHHHhCCce-eecCCCCChhhhhccCCCCCCCeEEeC
Q psy10999 65 PVDISEVEPA-----AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKS-NTGEGGENPERYLSSGDENQRSAIKQG 137 (447)
Q Consensus 65 ~~~~~~v~~~-----~~i~~Pf~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~-~sGeg~~~~e~~~~~~~~~~~~~i~Q~ 137 (447)
-+|.+++|.+ .++++||+|+|+++..+ +|+++.+.|+||.++|+++ .|.-++.+.|++.... ...-.|||
T Consensus 50 L~dVs~iD~sTtvlG~~i~~Pi~iapTa~qkma~pdGE~~taraa~~~~~~~i~Ss~at~S~EdI~~aa--p~~~rwfQ- 126 (363)
T KOG0538|consen 50 LRDVSKIDTSTTVLGQKISAPIMIAPTAMQKMAHPDGELATARAAQAAGTIMILSSWATCSVEDIASAA--PPGIRWFQ- 126 (363)
T ss_pred heecccccccceeccccccceeEEcchHHHhccCCcccHHHHHHHHhcCCcEEEechhcCCHHHHHhhC--CCCcEEEE-
Confidence 4666777754 68999999999999987 7999999999999999996 6777788999987542 24568999
Q ss_pred CCCc--c------------ccccccceeeccccccccccccCCCCCChHhhccccccccccccccCCCCCCCCCCCcccH
Q psy10999 138 KLYP--K------------TYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTK 203 (447)
Q Consensus 138 ~ly~--~------------~~~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~ 203 (447)
+|. + ...|+++++|+|+|+.|.|..+-++.+..+. .+.+|=.++.+-++ +.+
T Consensus 127 -LYvykdr~It~~Lv~raEk~GfkAlvlTvDtP~lG~R~~D~~n~f~lp~-----~l~lknfe~~~~~~--------v~~ 192 (363)
T KOG0538|consen 127 -LYVYKDRDITEQLVKRAEKAGFKALVLTVDTPRLGRRESDIKNKFSLPK-----NLTLKNFEGLKLTE--------VEE 192 (363)
T ss_pred -EEecCchHHHHHHHHHHHHcCceEEEEEeccccccCchhhhhhcccCCc-----cccccccccccccc--------CCc
Confidence 983 2 1226899999999998777766665544322 12222222222211 100
Q ss_pred HHHhhcCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCC
Q psy10999 204 DIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTG 283 (447)
Q Consensus 204 ~ia~~r~~~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg 283 (447)
. +..-++......+....+| +.|+|||..+ ..||+||++. .++||..|+++|+++|+||||||++
T Consensus 193 ~---------~~sg~~~~~~~~id~Sl~W-~Di~wLr~~T-~LPIvvKGil---t~eDA~~Ave~G~~GIIVSNHGgRQ- 257 (363)
T KOG0538|consen 193 A---------GDSGLAAYVSSQIDPSLSW-KDIKWLRSIT-KLPIVVKGVL---TGEDARKAVEAGVAGIIVSNHGGRQ- 257 (363)
T ss_pred c---------cchhhhhhhhcCCCCCCCh-hhhHHHHhcC-cCCeEEEeec---ccHHHHHHHHhCCceEEEeCCCccc-
Confidence 0 0000011111111111245 5789999998 6799999553 4689999999999999999999984
Q ss_pred CccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCC
Q psy10999 284 ASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLN 363 (447)
Q Consensus 284 ~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~ 363 (447)
.|..+.++.+|+|+++++ .+++||+.|||+|+|.||+|||||||.+|++|||++++++|.+
T Consensus 258 -------lD~vpAtI~~L~Evv~aV-----~~ri~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~G------- 318 (363)
T KOG0538|consen 258 -------LDYVPATIEALPEVVKAV-----EGRIPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKG------- 318 (363)
T ss_pred -------cCcccchHHHHHHHHHHh-----cCceEEEEecCcccchHHHHHHhcccceEEecCchheeecccc-------
Confidence 677888999999999995 5689999999999999999999999999999999999999985
Q ss_pred CCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccccccc
Q psy10999 364 TCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFK 420 (447)
Q Consensus 364 ~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~ 420 (447)
+.||.++|+.|++|+..+|++ .||+|+.+++++++
T Consensus 319 --------------------e~GV~~vl~iL~~efe~tmaL--sGc~sv~ei~~~~v 353 (363)
T KOG0538|consen 319 --------------------EAGVKKVLDILRDEFELTMAL--SGCRSVKEITRNHV 353 (363)
T ss_pred --------------------chhHHHHHHHHHHHHHHHHHH--hCCCchhhhCccce
Confidence 899999999999999999999 99999999998863
No 7
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=100.00 E-value=3.9e-40 Score=337.99 Aligned_cols=294 Identities=19% Similarity=0.165 Sum_probs=223.6
Q ss_pred CCCCCCCccc-----cccccceeecCCCcccC-cHHHHHHHHHHHHHhCCce-eecCCCCChhhhhccCCCCCCCeEEeC
Q psy10999 65 PVDISEVEPA-----AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKS-NTGEGGENPERYLSSGDENQRSAIKQG 137 (447)
Q Consensus 65 ~~~~~~v~~~-----~~i~~Pf~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~-~sGeg~~~~e~~~~~~~~~~~~~i~Q~ 137 (447)
-.|.+++|+. .++++||+|+||++..+ +++++.++|+||++.|+++ .|+.++.+.|++.+. .....|||
T Consensus 52 L~dv~~~d~~t~llG~~~~~Pi~iAP~g~~~l~hp~gE~~~AraA~~~g~~~~lSt~ss~slEeia~~---~~~~~wfQ- 127 (381)
T PRK11197 52 LKDMSDLSLETTLFGEKLSMPVALAPVGLTGMYARRGEVQAARAADAKGIPFTLSTVSVCPIEEVAPA---IKRPMWFQ- 127 (381)
T ss_pred ccCCCCCCCceEECCcccccchhhChHHHhhccCCchHHHHHHHHHHcCCCEEeeCCCcCCHHHHHhc---cCCCeEEE-
Confidence 3456666654 58999999999999987 8999999999999999996 677778899998753 23468999
Q ss_pred CCCc-c--cc-----------ccccceeeccccccccccccCCCCCChHhhccccccccc-ccccc-CCCCC-CC-CCCC
Q psy10999 138 KLYP-K--TY-----------CFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIK-MAQGA-KPGEG-GE-LPGY 199 (447)
Q Consensus 138 ~ly~-~--~~-----------~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik-~~QgA-kPg~g-g~-l~~~ 199 (447)
+|. . .+ .++++|+|||+|+.|+|..+-|+|++.+.. .++ +.|++ +|.|. +. +...
T Consensus 128 -lY~~~Dr~~~~~li~RA~~aG~~alvlTVD~pv~G~Rerd~rn~~~~p~~------~~~~~~~~~~~p~w~~~~~~~~~ 200 (381)
T PRK11197 128 -LYVLRDRGFMRNALERAKAAGCSTLVFTVDMPVPGARYRDAHSGMSGPNA------AMRRYLQAVTHPQWAWDVGLNGR 200 (381)
T ss_pred -EEecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCChhhhhcCCCCCCc------hhhhHHhhhcCchhhhhhccccC
Confidence 994 1 11 257999999999999998888888764321 122 34555 88874 21 1111
Q ss_pred cccHHHHhhcCCCCcccccCCCCCCCC--------CCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCc
Q psy10999 200 KVTKDIASTRHSVPGVGLISPPPHHDI--------YSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAE 271 (447)
Q Consensus 200 kv~~~ia~~r~~~~g~~lisp~~~~~~--------~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD 271 (447)
+. .+. +..+.+.++.+..++ ....+| +.|+|||+.|+ .||+||.| -...+|+.+.++|+|
T Consensus 201 ~~--~~~-----n~~~~~~~~~g~~~~~~~~~~~~~~~ltW-~di~~lr~~~~-~pvivKgV---~s~~dA~~a~~~Gvd 268 (381)
T PRK11197 201 PH--DLG-----NISAYLGKPTGLEDYIGWLGNNFDPSISW-KDLEWIRDFWD-GPMVIKGI---LDPEDARDAVRFGAD 268 (381)
T ss_pred CC--ccc-----ccccccccccchhHHHHHHHhccCCCCCH-HHHHHHHHhCC-CCEEEEec---CCHHHHHHHHhCCCC
Confidence 00 000 000111122221111 111346 67999999995 59999944 356899999999999
Q ss_pred EEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHH
Q psy10999 272 HIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 351 (447)
Q Consensus 272 ~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~a 351 (447)
+|+||||||++ .+..+|+..+|+++.+++ .+++|||+|||||+|.||+|||+|||++|++||+||++
T Consensus 269 ~I~Vs~hGGr~--------~d~~~~t~~~L~~i~~a~-----~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~ 335 (381)
T PRK11197 269 GIVVSNHGGRQ--------LDGVLSSARALPAIADAV-----KGDITILADSGIRNGLDVVRMIALGADTVLLGRAFVYA 335 (381)
T ss_pred EEEECCCCCCC--------CCCcccHHHHHHHHHHHh-----cCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHH
Confidence 99999997763 344578999999998874 34799999999999999999999999999999999999
Q ss_pred hcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccccccccc
Q psy10999 352 MGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFKQEG 423 (447)
Q Consensus 352 lgc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~~~~ 423 (447)
+++. |++||.++|+.|.+||+.+|++ +||+++.+++++++...
T Consensus 336 la~~---------------------------G~~gv~~~l~~l~~El~~~m~l--~G~~~i~el~~~~l~~~ 378 (381)
T PRK11197 336 LAAA---------------------------GQAGVANLLDLIEKEMRVAMTL--TGAKSISEITRDSLVQG 378 (381)
T ss_pred HHhc---------------------------cHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHhCHhhhccc
Confidence 9765 5999999999999999999999 99999999998877543
No 8
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=100.00 E-value=8e-40 Score=333.94 Aligned_cols=282 Identities=19% Similarity=0.144 Sum_probs=214.0
Q ss_pred CCCCCCccc-----cccccceeecCCCcccC-cHHHHHHHHHHHHHhCCce-eecCCCCChhhhhccCCCCCCCeEEeCC
Q psy10999 66 VDISEVEPA-----AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKS-NTGEGGENPERYLSSGDENQRSAIKQGK 138 (447)
Q Consensus 66 ~~~~~v~~~-----~~i~~Pf~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~-~sGeg~~~~e~~~~~~~~~~~~~i~Q~~ 138 (447)
.|.+++|+. .++++||+|+||++..+ +++++.++|+||+++|+++ .|+.++.+.|++... .....|||
T Consensus 53 rdv~~~d~~t~~lG~~~~~Pi~iAP~g~~~l~hp~gE~a~AraA~~~gi~~~lSt~ss~slEeva~~---~~~~~wfQ-- 127 (367)
T PLN02493 53 IDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST---GPGIRFFQ-- 127 (367)
T ss_pred cCCCCCCCceEECCccccccceechHHHHhhcCCchHHHHHHHHHHcCCCeeecCcccCCHHHHHhc---CCCCcEEE--
Confidence 455566654 58999999999999987 8999999999999999996 666677899998753 23468999
Q ss_pred CCc---ccc-----------ccccceeeccccccccccccCCCCCChHhhccccccccccccccCCCCCCCCCCCcccHH
Q psy10999 139 LYP---KTY-----------CFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKD 204 (447)
Q Consensus 139 ly~---~~~-----------~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~~ 204 (447)
+|. +.+ .+.++|+|+|+|+.|+|..+-|+|++.+. .+..+...+..++. ...... ..
T Consensus 128 lY~~~Dr~~~~~li~RA~~aG~~alvlTvD~p~~G~R~~d~r~~~~~p~-----~~~~~~~~~~~~~~---~~~~~~-~~ 198 (367)
T PLN02493 128 LYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPP-----NLTLKNFEGLDLGK---MDEAND-SG 198 (367)
T ss_pred EeecCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCcchhhhcccCCCCc-----ccchhhhhhccccC---CCcccc-hh
Confidence 994 111 25799999999999999888887775431 01111001110000 000000 00
Q ss_pred HHhhcCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCC
Q psy10999 205 IASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGA 284 (447)
Q Consensus 205 ia~~r~~~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~ 284 (447)
+.... . ..+....+| +.|+|||+.| ++||+||.| ....+|+.+.++|+|+|+||||||++
T Consensus 199 ~~~~~---------~----~~~~~~~tW-~di~wlr~~~-~~PiivKgV---~~~~dA~~a~~~Gvd~I~VsnhGGrq-- 258 (367)
T PLN02493 199 LASYV---------A----GQIDRTLSW-KDVQWLQTIT-KLPILVKGV---LTGEDARIAIQAGAAGIIVSNHGARQ-- 258 (367)
T ss_pred HHHHH---------h----hcCCCCCCH-HHHHHHHhcc-CCCEEeecC---CCHHHHHHHHHcCCCEEEECCCCCCC--
Confidence 00000 0 001111246 5699999998 569999944 56789999999999999999998863
Q ss_pred ccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCC
Q psy10999 285 SSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNT 364 (447)
Q Consensus 285 a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~ 364 (447)
.++++|++.+|+++++++ .+++|||+|||||+|.||+|||+|||++|++||+||+++++.
T Consensus 259 ------ld~~~~t~~~L~ei~~av-----~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~--------- 318 (367)
T PLN02493 259 ------LDYVPATISALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAE--------- 318 (367)
T ss_pred ------CCCchhHHHHHHHHHHHh-----CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhc---------
Confidence 467788999999999875 357999999999999999999999999999999999998765
Q ss_pred CcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccccccc
Q psy10999 365 CPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFKQ 421 (447)
Q Consensus 365 cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~~ 421 (447)
|++||.++++.+.+|++.+|++ +||+++.++.++.+.
T Consensus 319 ------------------G~~gv~~~l~~l~~el~~~m~l--~G~~~i~~l~~~~~~ 355 (367)
T PLN02493 319 ------------------GEAGVRKVLQMLRDEFELTMAL--SGCRSLKEISRNHIT 355 (367)
T ss_pred ------------------CHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHhChhhhh
Confidence 4899999999999999999999 999999999887764
No 9
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=100.00 E-value=1.6e-40 Score=339.89 Aligned_cols=287 Identities=22% Similarity=0.218 Sum_probs=212.0
Q ss_pred CCCCCCccc-----cccccceeecCCCcccC-cHHHHHHHHHHHHHhCCceeecCCC-CChhhhhccCCCCCCCeEEeCC
Q psy10999 66 VDISEVEPA-----AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKSNTGEGG-ENPERYLSSGDENQRSAIKQGK 138 (447)
Q Consensus 66 ~~~~~v~~~-----~~i~~Pf~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~~sGeg~-~~~e~~~~~~~~~~~~~i~Q~~ 138 (447)
.|++++|++ .++++||+|+||+++.+ +++++.++|+||+++|+++.+|+++ .+.|++... .....|+|
T Consensus 41 ~dv~~~D~st~~lG~~~s~P~~iaP~~~~~l~~~~ge~~lAraA~~~Gi~~~lss~s~~~~e~ia~~---~~~~~~~Q-- 115 (356)
T PF01070_consen 41 RDVSDPDTSTTFLGQKLSMPFFIAPMGGGGLAHPDGERALARAAAKAGIPMMLSSQSSASLEEIAAA---SGGPLWFQ-- 115 (356)
T ss_dssp SBGSS-BSSEEETTEEESSSEEEEEESTGGGTSTTHHHHHHHHHHHHTSEEEEETTCSSCHHHHHHH---CTSEEEEE--
T ss_pred CCcccCCCCeeeCCccCCCCeEEcchhhhhhhccchHHHHHHHHhccCcceeccCCccCCHHHHHhh---ccCCeEEE--
Confidence 455566654 58999999999999976 7999999999999999998777765 477887653 23678999
Q ss_pred CCc-c-------------ccccccceeeccccccccccccCCCCCChHhhccccccccc-ccccc-CCCCCCCCCCCccc
Q psy10999 139 LYP-K-------------TYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIK-MAQGA-KPGEGGELPGYKVT 202 (447)
Q Consensus 139 ly~-~-------------~~~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik-~~QgA-kPg~gg~l~~~kv~ 202 (447)
+|+ . ...++++++|+|+|..++|..+.|+|++.+. .+..+ +.|++ +|..+...
T Consensus 116 ly~~~d~~~~~~~i~rAe~aG~~Al~vtvD~~~~~~R~~d~r~g~~~p~-----~~~~~~~~~~~~~p~~~~~~------ 184 (356)
T PF01070_consen 116 LYPPRDRELTRDLIRRAEAAGAKALVVTVDAPQEGNRERDLRNGFSVPP-----KLSPRNLLDGASHPRSGMPR------ 184 (356)
T ss_dssp EEGBSSHHHHHHHHHHHHHTTCSEEEEETSHSSHHHBHHHHHHTCCCST-----THCTTCGTTTTTTT-TTTGG------
T ss_pred EEEecCHHHHHHHHHHhhcCCCCEEEEECcCcccCCcccccccccCCCc-----ccccccccccccCccccccc------
Confidence 995 1 1125799999999999888877777775433 12233 45666 67633110
Q ss_pred HHHHhhcCCCCc------ccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEe
Q psy10999 203 KDIASTRHSVPG------VGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVIS 276 (447)
Q Consensus 203 ~~ia~~r~~~~g------~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~Vs 276 (447)
+........+ ........+++ .+| +.|++||+.| +.||+||.| =...+|+.+.++|+|+|+||
T Consensus 185 --~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~w-~~i~~~~~~~-~~pvivKgv---~~~~da~~~~~~G~~~i~vs 253 (356)
T PF01070_consen 185 --LENNEAPPPGDNGAAAARFVGSQFDPS----LTW-DDIEWIRKQW-KLPVIVKGV---LSPEDAKRAVDAGVDGIDVS 253 (356)
T ss_dssp -------CSSSSTSTCHHHHHHHCHB-TT-----SH-HHHHHHHHHC-SSEEEEEEE----SHHHHHHHHHTT-SEEEEE
T ss_pred --ccccccccCCCcchhHHHHHHHhcCCC----CCH-HHHHHHhccc-CCceEEEec---ccHHHHHHHHhcCCCEEEec
Confidence 0000000000 00111111122 236 6699999998 569999955 25689999999999999999
Q ss_pred cCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccc
Q psy10999 277 GHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTM 356 (447)
Q Consensus 277 G~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~ 356 (447)
||||++ .|||+|+..+|+++++++ .++++||+|||||+|.||+||++|||++|++|++||+++...
T Consensus 254 ~hGGr~--------~d~~~~~~~~L~~i~~~~-----~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~- 319 (356)
T PF01070_consen 254 NHGGRQ--------LDWGPPTIDALPEIRAAV-----GDDIPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAG- 319 (356)
T ss_dssp SGTGTS--------STTS-BHHHHHHHHHHHH-----TTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHH-
T ss_pred CCCccc--------CccccccccccHHHHhhh-----cCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHh-
Confidence 997763 689999999999999986 358999999999999999999999999999999999998765
Q ss_pred hhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccccccc
Q psy10999 357 MRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFKQ 421 (447)
Q Consensus 357 ~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~~ 421 (447)
|++||.++++.|.+||+.+|++ +|++++.+|++++++
T Consensus 320 --------------------------g~~gv~~~~~~l~~el~~~m~l--~G~~~~~~l~~~~~~ 356 (356)
T PF01070_consen 320 --------------------------GEEGVERVLEILKEELKRAMFL--LGARSIAELRRSLLR 356 (356)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHHHH--HT-SBGGGHTGGGEE
T ss_pred --------------------------hHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHhCHHhcC
Confidence 4999999999999999999999 999999999988763
No 10
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=1.3e-39 Score=332.14 Aligned_cols=287 Identities=18% Similarity=0.138 Sum_probs=217.3
Q ss_pred CCCCCCccc-----cccccceeecCCCcccC-cHHHHHHHHHHHHHhCCce-eecCCCCChhhhhccCCCCCCCeEEeCC
Q psy10999 66 VDISEVEPA-----AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKS-NTGEGGENPERYLSSGDENQRSAIKQGK 138 (447)
Q Consensus 66 ~~~~~v~~~-----~~i~~Pf~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~-~sGeg~~~~e~~~~~~~~~~~~~i~Q~~ 138 (447)
.|.+++|+. .++++||+|+||++..+ +|+++.++|+||++.|+++ .|+.++.+.|++.+. .....|||
T Consensus 47 r~v~~~d~~ttllG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~ss~siEeva~a---~~~~~wfQ-- 121 (361)
T cd04736 47 VDVSKRDISASLFGKVWSAPLVIAPTGLNGAFWPNGDLALARAAAKAGIPFVLSTASNMSIEDVARQ---ADGDLWFQ-- 121 (361)
T ss_pred CCCCCCCCceeECCccccccccccHHHHHhccCCcHHHHHHHHHHHcCCcEEeeCCCCCCHHHHHhh---cCCCeEEE--
Confidence 345555554 57999999999999987 8999999999999999996 777788899998754 23578999
Q ss_pred CCcc--cc-----------ccccceeeccccccccccccCCCCCChHhhccccccccc-ccccc-CCCCC-CCCCCCccc
Q psy10999 139 LYPK--TY-----------CFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIK-MAQGA-KPGEG-GELPGYKVT 202 (447)
Q Consensus 139 ly~~--~~-----------~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik-~~QgA-kPg~g-g~l~~~kv~ 202 (447)
+|.. .+ .++++|+|||+|+.|+|..+-|+|++.+. .+..+ +.|++ +|.|. +.+.....
T Consensus 122 LY~~~r~~~~~ll~RA~~aG~~alvlTvD~pv~g~R~~d~r~~~~~p~-----~~~~~~~~~~~~~p~w~~~~~~~~~~- 195 (361)
T cd04736 122 LYVVHRELAELLVKRALAAGYTTLVLTTDVAVNGYRERDLRNGFAIPF-----RYTPRVLLDGILHPRWLLRFLRNGMP- 195 (361)
T ss_pred EEecCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCchhhhhcCCCCCc-----ccchhhhhhhccCchhhhhhcccccc-
Confidence 9951 11 15799999999999988888887776432 12233 45777 89885 22221110
Q ss_pred HHHHhhcCC-CCc---ccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecC
Q psy10999 203 KDIASTRHS-VPG---VGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGH 278 (447)
Q Consensus 203 ~~ia~~r~~-~~g---~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~ 278 (447)
.+...... ..+ ...... ..+....+| +.|++||+.|+. ||++|.| -...+|+.+.++|+|+|+||||
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~---~~~d~~~~w-~~i~~ir~~~~~-pviiKgV---~~~eda~~a~~~G~d~I~VSnh 266 (361)
T cd04736 196 -QLANFASDDAIDVEVQAALMS---RQMDASFNW-QDLRWLRDLWPH-KLLVKGI---VTAEDAKRCIELGADGVILSNH 266 (361)
T ss_pred -cccccccccccchhhHHHHHH---hccCCcCCH-HHHHHHHHhCCC-CEEEecC---CCHHHHHHHHHCCcCEEEECCC
Confidence 11111000 000 000000 011111235 579999999965 9999944 3567999999999999999999
Q ss_pred CCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchh
Q psy10999 279 DGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMR 358 (447)
Q Consensus 279 ~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~ 358 (447)
||++ .+...+++.+|+++++.+ ++|||+|||||+|.||+|||+|||++|++|+++|++++..
T Consensus 267 GGrq--------ld~~~~~~~~L~ei~~~~-------~~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~--- 328 (361)
T cd04736 267 GGRQ--------LDDAIAPIEALAEIVAAT-------YKPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAAR--- 328 (361)
T ss_pred CcCC--------CcCCccHHHHHHHHHHHh-------CCeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhc---
Confidence 7764 345678899999998864 3899999999999999999999999999999999998755
Q ss_pred cccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccc
Q psy10999 359 KCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWL 416 (447)
Q Consensus 359 ~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~ 416 (447)
|++||.++++.|.+||+.+|++ +||+++.+++
T Consensus 329 ------------------------G~~gv~~~l~~l~~el~~~m~l--~G~~~i~~l~ 360 (361)
T cd04736 329 ------------------------GEAGVSEVLRLLKEEIDRTLAL--IGCPDIASLT 360 (361)
T ss_pred ------------------------CHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHcC
Confidence 5999999999999999999999 9999998875
No 11
>PLN02979 glycolate oxidase
Probab=100.00 E-value=2.4e-39 Score=328.44 Aligned_cols=290 Identities=20% Similarity=0.161 Sum_probs=220.0
Q ss_pred cccccccccCCCCCCCCCCccc-----cccccceeecCCCcccC-cHHHHHHHHHHHHHhCCce-eecCCCCChhhhhcc
Q psy10999 53 LRGQLDFVTHDKPVDISEVEPA-----AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKS-NTGEGGENPERYLSS 125 (447)
Q Consensus 53 ~r~~~~~~~~~~~~~~~~v~~~-----~~i~~Pf~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~-~sGeg~~~~e~~~~~ 125 (447)
|-+++.|++ +--.|.+++|+. .++++||+||||++..+ +++++.++|+||+++|+++ .|+.++.+.|++...
T Consensus 40 ~~~~~~lrP-RvLrdv~~~dtst~llG~~~~~P~~iAP~g~~~l~hpdgE~a~ARAA~~agi~~~lSt~ss~slEeIa~a 118 (366)
T PLN02979 40 LGGFCDFRP-RILIDVSKIDMTTTVLGFKISMPIMVAPTAMQKMAHPDGEYATARAASAAGTIMTLSSWATSSVEEVAST 118 (366)
T ss_pred hCCeeEEEC-ccccCCCCCCCceEECCcccCccceecHHHHHhhCCCChHHHHHHHHHHcCCCeeeccCcCCCHHHHHhc
Confidence 455666663 233466677764 58999999999999986 8999999999999999997 556667788998753
Q ss_pred CCCCCCCeEEeCCCCc---ccc-----------ccccceeeccccccccccccCCCCCChHhhcccccccccccccc---
Q psy10999 126 GDENQRSAIKQGKLYP---KTY-----------CFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGA--- 188 (447)
Q Consensus 126 ~~~~~~~~i~Q~~ly~---~~~-----------~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik~~QgA--- 188 (447)
.....||| +|. +.. .++++|+|||+|+.|+|..+-|+|++.+. .+..+...++
T Consensus 119 ---~~~~~wfQ--LY~~~Dr~~~~~ll~RA~~aG~~AlvlTVD~pv~G~R~rd~rn~~~~p~-----~~~~~~~~~~~~~ 188 (366)
T PLN02979 119 ---GPGIRFFQ--LYVYKNRNVVEQLVRRAERAGFKAIALTVDTPRLGRRESDIKNRFTLPP-----NLTLKNFEGLDLG 188 (366)
T ss_pred ---cCCCeEEE--EeecCCHHHHHHHHHHHHHcCCCEEEEEecCCCCCCchhhhccCCCCCc-----ccchhhhhhcccc
Confidence 23578999 994 111 25799999999999999888887776431 0111110111
Q ss_pred CCCCCCCCCCCcccHHHHhhcCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHC
Q psy10999 189 KPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKG 268 (447)
Q Consensus 189 kPg~gg~l~~~kv~~~ia~~r~~~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~a 268 (447)
++... . ...++.. .. ..+....+| +.|+|||+.| +.||+||.| ....+|+.+.++
T Consensus 189 ~~~~~----~---~~~~~~~---------~~----~~~~~~ltW-~dl~wlr~~~-~~PvivKgV---~~~~dA~~a~~~ 243 (366)
T PLN02979 189 KMDEA----N---DSGLASY---------VA----GQIDRTLSW-KDVQWLQTIT-KLPILVKGV---LTGEDARIAIQA 243 (366)
T ss_pred CCCcc----c---chhHHHH---------Hh----hcCCCCCCH-HHHHHHHhcc-CCCEEeecC---CCHHHHHHHHhc
Confidence 11000 0 0001000 00 001111246 5699999999 569999944 567899999999
Q ss_pred CCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 269 KAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 269 GaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
|+|+|+||||||++ .++++|++.+|+++++++ .++++||+|||||+|.||+|||+||||+|++||++
T Consensus 244 Gvd~I~VsnhGGrq--------ld~~p~t~~~L~ei~~~~-----~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~ 310 (366)
T PLN02979 244 GAAGIIVSNHGARQ--------LDYVPATISALEEVVKAT-----QGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPV 310 (366)
T ss_pred CCCEEEECCCCcCC--------CCCchhHHHHHHHHHHHh-----CCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHH
Confidence 99999999998864 467788999999999875 34799999999999999999999999999999999
Q ss_pred HHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccccccc
Q psy10999 349 LITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFK 420 (447)
Q Consensus 349 L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~ 420 (447)
|++++.. |++||.++++.|.+|++.+|++ +|++++.++.++.+
T Consensus 311 L~~la~~---------------------------G~~Gv~~~l~~l~~El~~~m~l--~G~~~i~el~~~~~ 353 (366)
T PLN02979 311 VFSLAAE---------------------------GEAGVRKVLQMLRDEFELTMAL--SGCRSLKEISRNHI 353 (366)
T ss_pred HHHHHhc---------------------------CHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHhChhhh
Confidence 9998754 5899999999999999999999 99999999987766
No 12
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=100.00 E-value=6.1e-39 Score=329.61 Aligned_cols=333 Identities=15% Similarity=0.094 Sum_probs=230.7
Q ss_pred HHHHHHHhcC-CHHHHHHHHHHhhhccCccccccc------cccccCCCCCCCCCCccc-----cccccceeecCCCccc
Q psy10999 23 TDFQEAASNN-NKNAYDRFRESNMESVKYSTLRGQ------LDFVTHDKPVDISEVEPA-----AEIVKRFATGAMSFGS 90 (447)
Q Consensus 23 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~------~~~~~~~~~~~~~~v~~~-----~~i~~Pf~iaaMs~G~ 90 (447)
.+|.++++.. +...|.-|..-.+ ...|+|.= +.|++ +--.|.+++|+. .++++||+|+||++..
T Consensus 22 ~D~~~~Ar~~lp~~~~~y~~gGa~---de~t~~~N~~af~~~~l~P-RvL~dv~~~dt~t~llG~~~~~P~~iAP~g~~~ 97 (383)
T cd03332 22 ERLEALAREALSPGAFAYVAGGAG---SESTARANRDAFSRWRIVP-RMLRGVTERDLSVELFGRTLAAPLLLAPIGVQE 97 (383)
T ss_pred HHHHHHHHHhCCHHHHHHhccCcc---hHHHHHHHHHHHHhcCccc-cccccCCCCCCceeeCCccccccceechHHHHH
Confidence 8887777765 4555533332211 11122211 12221 223466666654 5899999999999998
Q ss_pred C-cHHHHHHHHHHHHHhCCce-eecCCCCChhhhhccCCCCCCCeEEeCCCCc---ccc-----------ccccceeecc
Q psy10999 91 I-SIEAHTTLAKAMNKIGAKS-NTGEGGENPERYLSSGDENQRSAIKQGKLYP---KTY-----------CFLSSLFTDL 154 (447)
Q Consensus 91 l-s~ea~~aLA~AA~~~G~~~-~sGeg~~~~e~~~~~~~~~~~~~i~Q~~ly~---~~~-----------~~~~lv~t~d 154 (447)
+ +++++.++|+||+++|+++ .|+.++.+.|++.... .....||| +|. +.+ .+.++++|||
T Consensus 98 l~~p~gE~a~ArAA~~~gi~~~lSt~ss~slEeIa~~~--~~~~~wfQ--lY~~~dr~~~~~ll~RA~~aG~~alvlTVD 173 (383)
T cd03332 98 LFHPDAELATARAAAELGVPYILSTASSSSIEDVAAAA--GDAPRWFQ--LYWPKDDDLTESLLRRAEKAGYRVLVVTLD 173 (383)
T ss_pred hcCCcHHHHHHHHHHHcCCCeeecCCCCCCHHHHHhhc--CCCCcEEE--eeCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6 8999999999999999997 5557778999987531 23468999 995 122 2579999999
Q ss_pred ccccccccccCCCCCChHhhcccccccccccccc-CCCCCCCCCCCcccHHHHhhcCCCCcccccCCCCCCCCCCHHHHH
Q psy10999 155 FPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGA-KPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLA 233 (447)
Q Consensus 155 ~p~~~~rv~s~rfGv~~~~l~~a~~ieik~~QgA-kPg~gg~l~~~kv~~~ia~~r~~~~g~~lisp~~~~~~~s~edl~ 233 (447)
+|+.|+|..+-|.++.+ .... . .+.+.. +|.|--.+.. ..............+..-. ....+....+|
T Consensus 174 ~pv~g~Rerd~r~~~~p-~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~tW- 242 (383)
T cd03332 174 TWSLGWRPRDLDLGYLP-FLRG---I--GIANYFSDPVFRKKLAE-PVGEDPEAPPPMEAAVARF---VSVFSGPSLTW- 242 (383)
T ss_pred CCCCCCchhhhhcCCCC-Cccc---c--chhhhhccchhhhcccc-CCCCCcccccccchhHHHH---HHhcCCCCCCH-
Confidence 99999888887777632 2110 0 111111 3444211100 0000000000000000000 00001111246
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.|+|||+.| +.||+||.| ....+|+.+.++|+|+|+||||||++ .+.++|++.+|+++++++
T Consensus 243 ~~i~~lr~~~-~~pvivKgV---~~~~dA~~a~~~G~d~I~vsnhGGr~--------~d~~~~t~~~L~ei~~~~----- 305 (383)
T cd03332 243 EDLAFLREWT-DLPIVLKGI---LHPDDARRAVEAGVDGVVVSNHGGRQ--------VDGSIAALDALPEIVEAV----- 305 (383)
T ss_pred HHHHHHHHhc-CCCEEEecC---CCHHHHHHHHHCCCCEEEEcCCCCcC--------CCCCcCHHHHHHHHHHHh-----
Confidence 6799999998 469999944 45789999999999999999998874 467899999999999885
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHH
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFM 393 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~ 393 (447)
.+++|||+|||||+|.||+|||+||||+|++||+||++++.. |++||.++++.
T Consensus 306 ~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~---------------------------G~~gv~~~l~~ 358 (383)
T cd03332 306 GDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALG---------------------------GEDGVEHVLRN 358 (383)
T ss_pred cCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhc---------------------------cHHHHHHHHHH
Confidence 347999999999999999999999999999999999998654 59999999999
Q ss_pred HHHHHHHHHhhhCCCCCCccccccccc
Q psy10999 394 LAEEVSRDYRAESPGFDFPLVWLGDFK 420 (447)
Q Consensus 394 l~~Elr~~M~l~~~G~~s~~~l~~~~~ 420 (447)
|.+||+.+|++ +|++++.+|+++++
T Consensus 359 l~~El~~~m~l--~G~~~i~~l~~~~~ 383 (383)
T cd03332 359 LLAELDLTMGL--AGIRSIAELTRDAL 383 (383)
T ss_pred HHHHHHHHHHH--HCCCCHHHhCcccC
Confidence 99999999999 99999999987753
No 13
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=100.00 E-value=3.2e-37 Score=315.11 Aligned_cols=321 Identities=16% Similarity=0.099 Sum_probs=228.5
Q ss_pred ccccchhh-HHHHHHHhcC-CHHHHHHHHHHhhhccCccccccc------cccccCCCCCCCCCCccc-----cccccce
Q psy10999 15 GLISKPFS-TDFQEAASNN-NKNAYDRFRESNMESVKYSTLRGQ------LDFVTHDKPVDISEVEPA-----AEIVKRF 81 (447)
Q Consensus 15 ~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~~------~~~~~~~~~~~~~~v~~~-----~~i~~Pf 81 (447)
.|.-+... .+|.++++.. +...|.=|..-..+ ..|+|.= +.|++ +--.|.+++++. .++++||
T Consensus 8 ~~~~~~~~i~D~~~~A~~~lp~~~~~y~~~ga~d---e~t~~~N~~af~~~~l~P-R~L~dv~~~d~~t~llG~~~~~Pv 83 (367)
T TIGR02708 8 EGYVDFINTYDLEEMAQQVIPKGAFGYIASGAGD---TFTLRENIRAFNHKLIVP-HLLQDVENPSTEIEFLGHKLKSPF 83 (367)
T ss_pred cCCcCCCCHHHHHHHHHHhCCHHHHHHHhcCCch---HHHHHHHHHHHHhcCeec-ccccCCCCCCCceeeCCccccccc
Confidence 34444444 8888888765 55555433322211 1122211 11221 122355555554 5799999
Q ss_pred eecCCCcccC-cHHHHHHHHHHHHHhCCce-eecCCCCChhhhhccCCCCCCCeEEeCCCCc---ccc-----------c
Q psy10999 82 ATGAMSFGSI-SIEAHTTLAKAMNKIGAKS-NTGEGGENPERYLSSGDENQRSAIKQGKLYP---KTY-----------C 145 (447)
Q Consensus 82 ~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~-~sGeg~~~~e~~~~~~~~~~~~~i~Q~~ly~---~~~-----------~ 145 (447)
+|+||++..+ +++++.++|+||+++|+++ .|..++.+.|++.... .....||| +|. +.+ .
T Consensus 84 ~iaP~g~~~l~~p~gE~~~ArAA~~~g~~~~lSt~ss~slEev~~~~--~~~~~wfQ--lY~~~dr~~~~~li~RA~~aG 159 (367)
T TIGR02708 84 IMAPVAAHKLANEQGEVATARGVSEFGSIYTTSSYSTADLPEISEAL--NGTPHWFQ--FYMSKDDGINRDIMDRVKADG 159 (367)
T ss_pred ccCcHHHhhccCCcHHHHHHHHHHHcCCCeeecccccCCHHHHHhhc--CCCceEEE--EeccCCHHHHHHHHHHHHHcC
Confidence 9999999986 8999999999999999997 6666677889987531 13468999 994 122 1
Q ss_pred cccceeeccccccccccccCCCCCChHhhcccccccccccc-ccCCCCCCCCCCCcccHHHHhhcCCCCcccccCCCCCC
Q psy10999 146 FLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQ-GAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHH 224 (447)
Q Consensus 146 ~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik~~Q-gAkPg~gg~l~~~kv~~~ia~~r~~~~g~~lisp~~~~ 224 (447)
+.++++|||+|+.|+|..+.|+++..+. .....+ ....+- ......+ .....+
T Consensus 160 ~~alvlTvD~p~~g~R~~d~r~~~~~p~-------~~~~~~~~~~~~~------~~~~~~~-------------~~~~~~ 213 (367)
T TIGR02708 160 AKAIVLTADATVGGNREVDVRNGFVFPV-------GMPIVQEYLPTGA------GKSMDNV-------------YKSAKQ 213 (367)
T ss_pred CCEEEEecCCCCCCcchhhhhcCCCCCC-------ccchhhhhcccCC------ccchhhh-------------ccccCC
Confidence 5799999999998888877777664321 011000 000000 0000000 000011
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHH
Q psy10999 225 DIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAET 304 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev 304 (447)
. .+| +.|++||+.| ++||+|| +++...+|+.+.++|+|+|+||||||++ .+.+.+....|+++
T Consensus 214 ~----~~w-~~i~~l~~~~-~~PvivK---Gv~~~eda~~a~~~Gvd~I~VS~HGGrq--------~~~~~a~~~~L~ei 276 (367)
T TIGR02708 214 K----LSP-RDIEEIAGYS-GLPVYVK---GPQCPEDADRALKAGASGIWVTNHGGRQ--------LDGGPAAFDSLQEV 276 (367)
T ss_pred C----CCH-HHHHHHHHhc-CCCEEEe---CCCCHHHHHHHHHcCcCEEEECCcCccC--------CCCCCcHHHHHHHH
Confidence 1 235 5699999988 5699999 4466789999999999999999998763 34566778999999
Q ss_pred HHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcH
Q psy10999 305 HQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKP 384 (447)
Q Consensus 305 ~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~ 384 (447)
.+++ ++++|||+|||||+|.||+|||+||||+|++||++|+++++. |+
T Consensus 277 ~~av-----~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~---------------------------G~ 324 (367)
T TIGR02708 277 AEAV-----DKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALG---------------------------GS 324 (367)
T ss_pred HHHh-----CCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhc---------------------------CH
Confidence 8874 457999999999999999999999999999999999998765 59
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCCCCCccccccccc
Q psy10999 385 EHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFK 420 (447)
Q Consensus 385 ~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~ 420 (447)
+||.++++.|.+||+.+|++ +||+++.+|+...+
T Consensus 325 ~gv~~~l~~l~~El~~~M~l--~G~~~i~eL~~~~l 358 (367)
T TIGR02708 325 QGARQVFEYLNKELKRVMQL--TGTQTIEDVKGFDL 358 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHH--hCCCCHHHhCcccc
Confidence 99999999999999999999 99999999987765
No 14
>PLN02535 glycolate oxidase
Probab=100.00 E-value=3.3e-37 Score=314.95 Aligned_cols=279 Identities=18% Similarity=0.104 Sum_probs=213.4
Q ss_pred CCCCCCccc-----cccccceeecCCCcccC-cHHHHHHHHHHHHHhCCce-eecCCCCChhhhhccCCCCCCCeEEeCC
Q psy10999 66 VDISEVEPA-----AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKS-NTGEGGENPERYLSSGDENQRSAIKQGK 138 (447)
Q Consensus 66 ~~~~~v~~~-----~~i~~Pf~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~-~sGeg~~~~e~~~~~~~~~~~~~i~Q~~ 138 (447)
.|.+++|+. .++++||+|+|+++..+ +|+++.++|+||+++|+++ .|+.++.+.|++.+. .....|||
T Consensus 55 ~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~hp~gE~a~AraA~~~g~~~~lSt~s~~slEeva~~---~~~~~wfQ-- 129 (364)
T PLN02535 55 VDVSKIDMSTTILGYTISAPIMIAPTAMHKLAHPEGEIATARAAAACNTIMVLSFMASCTVEEVASS---CNAVRFLQ-- 129 (364)
T ss_pred cCCCCCCCceEECCccccccceechHHHhcccCcchHHHHHHHHHHcCCCeEecCcccCCHHHHHhc---CCCCeEEE--
Confidence 455566654 58999999999999987 8999999999999999996 666667889998753 23578999
Q ss_pred CCc-c--cc-----------ccccceeeccccccccccccCCCCCChHhhccccccccccccccCCCCCCCCCCCcccHH
Q psy10999 139 LYP-K--TY-----------CFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKD 204 (447)
Q Consensus 139 ly~-~--~~-----------~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~~ 204 (447)
+|+ + .+ .+.++|+|+|+|+.|+|..+.|+|+..+.+++. .+...++..+ .. ...
T Consensus 130 lY~~~dr~~~~~ll~RA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~-------~~~~~~~~~~----~~-~~~ 197 (364)
T PLN02535 130 LYVYKRRDIAAQLVQRAEKNGYKAIVLTADVPRLGRREADIKNKMISPQLKNF-------EGLLSTEVVS----DK-GSG 197 (364)
T ss_pred EeccCCHHHHHHHHHHHHHcCCCEEEEeecCCCCCCchhhhhcCCCCcchhhH-------hhhhccCCCc----cc-ccc
Confidence 994 1 11 257999999999999999888888764321111 1000111000 00 000
Q ss_pred HHhhcCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCC
Q psy10999 205 IASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGA 284 (447)
Q Consensus 205 ia~~r~~~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~ 284 (447)
+.... ...+.| ..+| +.|++||+.| ++||+||.|. ...+|+.+.++|+|+|+|+||+|+.
T Consensus 198 ~~~~~-----~~~~~~--------~~tW-~~i~~lr~~~-~~PvivKgV~---~~~dA~~a~~~GvD~I~vsn~GGr~-- 257 (364)
T PLN02535 198 LEAFA-----SETFDA--------SLSW-KDIEWLRSIT-NLPILIKGVL---TREDAIKAVEVGVAGIIVSNHGARQ-- 257 (364)
T ss_pred HHHHH-----HhccCC--------CCCH-HHHHHHHhcc-CCCEEEecCC---CHHHHHHHHhcCCCEEEEeCCCcCC--
Confidence 00000 000111 1246 6799999987 5799999553 4578999999999999999998753
Q ss_pred ccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCC
Q psy10999 285 SSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNT 364 (447)
Q Consensus 285 a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~ 364 (447)
.++++|+..+|+++.+++ .+++|||+||||++|.||+|||+|||++|++||+||++++..
T Consensus 258 ------~d~~~~t~~~L~ev~~av-----~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~--------- 317 (364)
T PLN02535 258 ------LDYSPATISVLEEVVQAV-----GGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAK--------- 317 (364)
T ss_pred ------CCCChHHHHHHHHHHHHH-----hcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhc---------
Confidence 468899999999999875 246999999999999999999999999999999999987644
Q ss_pred CcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccccccc
Q psy10999 365 CPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFKQ 421 (447)
Q Consensus 365 cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~~ 421 (447)
|+++|.++++.+.+|++.+|++ +|++++.++.++++.
T Consensus 318 ------------------g~~gv~~~l~~l~~el~~~m~l--~G~~~i~el~~~~l~ 354 (364)
T PLN02535 318 ------------------GEDGVRKVIEMLKDELEITMAL--SGCPSVKDITRSHVR 354 (364)
T ss_pred ------------------cHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHhhhhhcc
Confidence 5899999999999999999999 999999999987763
No 15
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=100.00 E-value=3.6e-36 Score=306.26 Aligned_cols=272 Identities=20% Similarity=0.154 Sum_probs=204.2
Q ss_pred CCCccc-----cccccceeecCCCcccC-cHHHHHHHHHHHHHhCCceeecCC-CCChhhhhccCCCCCCCeEEeCCCCc
Q psy10999 69 SEVEPA-----AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKSNTGEG-GENPERYLSSGDENQRSAIKQGKLYP 141 (447)
Q Consensus 69 ~~v~~~-----~~i~~Pf~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~~sGeg-~~~~e~~~~~~~~~~~~~i~Q~~ly~ 141 (447)
+++++. .++++||+|+||++..+ +++++.++|+||+++|+++..++. +.+.|++.+.. ......||| +|.
T Consensus 50 ~~~d~~~~~lG~~~~~Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~lss~s~~s~e~v~~~~-~~~~~~w~Q--ly~ 126 (344)
T cd02922 50 EKVDTSTTILGHKVSLPFFISPAALAKLAHPDGELNLARAAGKHGILQMISTNASCSLEEIVDAR-PPDQPLFFQ--LYV 126 (344)
T ss_pred CCCCCceEECCcccCCceeeChHHHhhhCCchHHHHHHHHHHHcCCCEEecCcccCCHHHHHHhc-CCCCcEEEE--Eee
Confidence 555543 58999999999999875 899999999999999999866655 46778866431 112578999 994
Q ss_pred -c-------------ccccccceeeccccccccccccCCCCCChHhhccccccccccccccCCCCCCCCCCCcccHHHHh
Q psy10999 142 -K-------------TYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIAS 207 (447)
Q Consensus 142 -~-------------~~~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~ 207 (447)
+ ...++++++|+|+|+.|.|..+-|.|+..+. ++.|--.. ....
T Consensus 127 ~~d~~~~~~l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~---------~~~~~~~~------~~~~------- 184 (344)
T cd02922 127 NKDRTKTEELLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAV---------SDGPAGKK------TKAK------- 184 (344)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCc---------cccccccc------cccc-------
Confidence 1 1125799999999998777666666554321 11110000 0000
Q ss_pred hcCCCCcc-cccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCcc
Q psy10999 208 TRHSVPGV-GLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASS 286 (447)
Q Consensus 208 ~r~~~~g~-~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~ 286 (447)
.++. .... ..+....+| +.|++||+.| +.||+|| +++...+|+.+.++|+|+|+||||+|++
T Consensus 185 ----~~~~~~~~~----~~~~~~~~~-~~i~~l~~~~-~~PvivK---gv~~~~dA~~a~~~G~d~I~vsnhgG~~---- 247 (344)
T cd02922 185 ----GGGAGRAMS----GFIDPTLTW-DDIKWLRKHT-KLPIVLK---GVQTVEDAVLAAEYGVDGIVLSNHGGRQ---- 247 (344)
T ss_pred ----cchHHHHHh----hccCCCCCH-HHHHHHHHhc-CCcEEEE---cCCCHHHHHHHHHcCCCEEEEECCCccc----
Confidence 0000 0000 000011234 6799999998 5699999 4467889999999999999999997653
Q ss_pred ccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCc
Q psy10999 287 WTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCP 366 (447)
Q Consensus 287 ~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP 366 (447)
.+...|+..+|+++++.+.+.+ +++|||+|||||+|.||+|||+|||++|++||+||++++|.
T Consensus 248 ----~d~~~~~~~~L~~i~~~~~~~~--~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~----------- 310 (344)
T cd02922 248 ----LDTAPAPIEVLLEIRKHCPEVF--DKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAY----------- 310 (344)
T ss_pred ----CCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhc-----------
Confidence 2456788999999999775543 47999999999999999999999999999999999999876
Q ss_pred ccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 367 VGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 367 ~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
|+++|.++++.|.+||+.+|++ +|++++.++++
T Consensus 311 ----------------G~~gv~~~l~~l~~EL~~~m~l--~G~~~i~~l~~ 343 (344)
T cd02922 311 ----------------GEEGVEKAIQILKDEIETTMRL--LGVTSLDQLGP 343 (344)
T ss_pred ----------------cHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHhCc
Confidence 4999999999999999999999 99999998865
No 16
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=100.00 E-value=2.6e-36 Score=307.63 Aligned_cols=273 Identities=16% Similarity=0.110 Sum_probs=205.3
Q ss_pred CCCCCCccc-----cccccceeecCCCcccC-cHHHHHHHHHHHHHhCCce-eecCCCCChhhhhccCCCCCCCeEEeCC
Q psy10999 66 VDISEVEPA-----AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKS-NTGEGGENPERYLSSGDENQRSAIKQGK 138 (447)
Q Consensus 66 ~~~~~v~~~-----~~i~~Pf~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~-~sGeg~~~~e~~~~~~~~~~~~~i~Q~~ 138 (447)
.|.+++|+. .+++.||+|+||+++.+ +++++.++|+||+++|+++ .|+.++.+.|++.... .....|||
T Consensus 55 ~dv~~~d~~t~~lG~~~~~P~~iaP~g~~~l~~p~ge~a~AraA~~~gi~~~lSt~s~~s~Eei~~~~--~~~~~wfQ-- 130 (351)
T cd04737 55 QGVESPDTSTELLGIKLKTPIIMAPIAAHGLAHATGEVATARGMAEVGSLFSISTYSNTSLEEIAKAS--NGGPKWFQ-- 130 (351)
T ss_pred cCCCCCCCceEeCCccccchhhhHHHHHHHhcCCchHHHHHHHHHHcCCCEEecCCCCCCHHHHHHhc--CCCCeEEE--
Confidence 355555554 57999999999999987 7899999999999999997 5888888999987532 13468999
Q ss_pred CCc-c--c-----------cccccceeeccccccccccccCCCCCChHh-hccccccccccccccCCCCCCCCCCCcccH
Q psy10999 139 LYP-K--T-----------YCFLSSLFTDLFPVYGLPVASGRFGVTSSY-LAHADDLQIKMAQGAKPGEGGELPGYKVTK 203 (447)
Q Consensus 139 ly~-~--~-----------~~~~~lv~t~d~p~~~~rv~s~rfGv~~~~-l~~a~~ieik~~QgAkPg~gg~l~~~kv~~ 203 (447)
+|. + . ..+.++++|+|+|+.|+|..+.|.|+..+. +.....++ ..+ +
T Consensus 131 lY~~~d~~~~~~ll~rA~~aG~~alvlTvD~p~~g~R~~d~r~~~~~p~~~~~~~~~~--~~~---~------------- 192 (351)
T cd04737 131 LYMSKDDGFNRSLLDRAKAAGAKAIILTADATVGGNREADIRNKFQFPFGMPNLNHFS--EGT---G------------- 192 (351)
T ss_pred EeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCcchHHHHhcCCCCcccchhhhhc--ccc---c-------------
Confidence 994 1 1 124699999999998777666665544321 00000000 000 0
Q ss_pred HHHhhcCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCC
Q psy10999 204 DIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTG 283 (447)
Q Consensus 204 ~ia~~r~~~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg 283 (447)
..++.....+..++.+ +| +.|.+||+.| ++||+||++ ....+|+.+.++|+|+|+||||+|++
T Consensus 193 -------~~~~~~~~~~~~~~~~----~~-~~l~~lr~~~-~~PvivKgv---~~~~dA~~a~~~G~d~I~vsnhGGr~- 255 (351)
T cd04737 193 -------KGKGISEIYAAAKQKL----SP-ADIEFIAKIS-GLPVIVKGI---QSPEDADVAINAGADGIWVSNHGGRQ- 255 (351)
T ss_pred -------cCcchhhhhhhccCCC----CH-HHHHHHHHHh-CCcEEEecC---CCHHHHHHHHHcCCCEEEEeCCCCcc-
Confidence 0000000011111111 35 6789999988 579999943 45689999999999999999997754
Q ss_pred CccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCC
Q psy10999 284 ASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLN 363 (447)
Q Consensus 284 ~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~ 363 (447)
.+.+.++...|+++.+++ ++++|||+||||++|.||+|||+|||++|++||++|++++..
T Consensus 256 -------ld~~~~~~~~l~~i~~a~-----~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~-------- 315 (351)
T cd04737 256 -------LDGGPASFDSLPEIAEAV-----NHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALG-------- 315 (351)
T ss_pred -------CCCCchHHHHHHHHHHHh-----CCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhc--------
Confidence 345667888999998875 357999999999999999999999999999999999998754
Q ss_pred CCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccccc
Q psy10999 364 TCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGD 418 (447)
Q Consensus 364 ~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~ 418 (447)
|++||.++++.+.+||+.+|++ +|++++.+++++
T Consensus 316 -------------------G~~gv~~~l~~l~~El~~~m~l--~G~~~i~el~~~ 349 (351)
T cd04737 316 -------------------GAQGVASVLEHLNKELKIVMQL--AGTRTIEDVKRT 349 (351)
T ss_pred -------------------hHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHhCCC
Confidence 5999999999999999999999 999999998764
No 17
>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=294.52 Aligned_cols=282 Identities=21% Similarity=0.178 Sum_probs=214.5
Q ss_pred CCCCCCCCCccc-----cccccceeecCCCcccC-cHHHHHHHHHHHHHhCCce-eecCCCCChhhhhccCCCCCCCeEE
Q psy10999 63 DKPVDISEVEPA-----AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKS-NTGEGGENPERYLSSGDENQRSAIK 135 (447)
Q Consensus 63 ~~~~~~~~v~~~-----~~i~~Pf~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~-~sGeg~~~~e~~~~~~~~~~~~~i~ 135 (447)
.|+++ ++|+. .++++||+|+||++|.+ +++++..-|++|+.+|.++ .+|-|+.+.|+..... . +
T Consensus 46 L~~v~--~idlst~~~G~~l~~Pi~iapmt~g~~~~~~ge~~~a~~A~~a~~~~i~s~~gs~~ie~~~~~~---~----~ 116 (360)
T COG1304 46 LPEVD--DIDLSTTFLGQKLSAPIIIAPMTGGGLAHPEGEVINAKLAAAAGEPFILSTVGSQRIEEVAAAP---P----F 116 (360)
T ss_pred CCCcc--cCccceEecCccccCCEEEeccccccccChhhHHHHHHHHHHcCCCeeeeccccCcHHHhhcCc---c----h
Confidence 35555 77764 58999999999999987 7999999999999999994 8888888888765321 1 7
Q ss_pred eCCCCc--------ccc------ccccceeeccccccccccccCCCCCChHhhccccccccc--ccccc-CCCCCCCCCC
Q psy10999 136 QGKLYP--------KTY------CFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIK--MAQGA-KPGEGGELPG 198 (447)
Q Consensus 136 Q~~ly~--------~~~------~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik--~~QgA-kPg~gg~l~~ 198 (447)
| +|. +.+ .+.++++|+|.|+.+.|..+.+.++.. +.+.++ +.|.+ +|. |...+
T Consensus 117 q--~y~~~~R~~~~~~~~~a~n~G~~~lv~t~d~~~~~~r~~d~~~~i~a------~~~~~h~n~~qe~~~p~--g~~~~ 186 (360)
T COG1304 117 Q--LYFSKDREFAPNLVDRAANAGAKQLVLTVDSPVGGERERDAVNGISA------PALAIHLNVLQEATQPE--GDRDG 186 (360)
T ss_pred h--hhhHHHHHhhHHHHHHHHhcCCcceeeccCccchHHHHHHHHhccCC------CcccccccHHHHhcCCc--ccccc
Confidence 7 763 111 146899999999876665544333332 222223 55666 553 22222
Q ss_pred CcccHHHHhhcCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecC
Q psy10999 199 YKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGH 278 (447)
Q Consensus 199 ~kv~~~ia~~r~~~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~ 278 (447)
....+.++...... .-| - .. ++.+.+|++.|. .|+++|+|. ...|+.++.+.|+|.|.+|+|
T Consensus 187 ~~~~~~i~~~~~~~-----~~P----~----i~-ked~~~i~~~~~-~~lv~kGV~---~~~D~~~a~~tg~~~I~vsnh 248 (360)
T COG1304 187 KGGLDSIAEYVSAL-----SVP----V----IS-KEDGAGISKEWA-GPLVLKGIL---APEDAAGAGGTGADGIEVSNH 248 (360)
T ss_pred cchhhHHHHHHHhc-----CCC----c----cc-HHHHhHHHHhcC-CcHHHhCCC---CHHHHHhhccCCceEEEEEcC
Confidence 22222333322110 000 1 12 367889999985 499999442 457999999999999999999
Q ss_pred CCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchh
Q psy10999 279 DGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMR 358 (447)
Q Consensus 279 ~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~ 358 (447)
+|+ +.|||+|+..+|+++.+++ .++++||+|||||+|.||+||+||||++|++|||||+++++.
T Consensus 249 ggr--------qlD~g~st~~~L~ei~~av-----~~~~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~--- 312 (360)
T COG1304 249 GGR--------QLDWGISTADSLPEIVEAV-----GDRIEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAG--- 312 (360)
T ss_pred CCc--------cccCCCChHHHHHHHHHHh-----CCCeEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhc---
Confidence 875 6899999999999999985 457999999999999999999999999999999999999766
Q ss_pred cccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccccccccc
Q psy10999 359 KCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFKQEG 423 (447)
Q Consensus 359 ~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~~~~ 423 (447)
+++||.++|+.+.+||+.+|++ +|++++.+|++..+...
T Consensus 313 ------------------------g~~GV~~~le~~~~El~~~M~L--~G~~~i~el~~~~l~~~ 351 (360)
T COG1304 313 ------------------------GEAGVERVLEIIRKELKIAMAL--TGAKNIEELKRVPLVLS 351 (360)
T ss_pred ------------------------cHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHhccCceeec
Confidence 4899999999999999999999 99999999998876553
No 18
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=100.00 E-value=4.5e-34 Score=292.19 Aligned_cols=279 Identities=22% Similarity=0.247 Sum_probs=211.2
Q ss_pred CCCCCCCCCCccc-----cccccceeecCCCccc-CcHHHHHHHHHHHHHhCCceeecCCC---CChhhhhccCCCCCCC
Q psy10999 62 HDKPVDISEVEPA-----AEIVKRFATGAMSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGG---ENPERYLSSGDENQRS 132 (447)
Q Consensus 62 ~~~~~~~~~v~~~-----~~i~~Pf~iaaMs~G~-ls~ea~~aLA~AA~~~G~~~~sGeg~---~~~e~~~~~~~~~~~~ 132 (447)
+-|+++++|||++ .++..||+|+||++|+ .+.+++.+||++|+++|+++++|+++ .+|+ +. ....
T Consensus 39 ~lp~~~~~~vd~s~~~~g~~l~~Pi~i~~MtGgs~~~~~in~~La~~a~~~G~~~~~Gs~~~~~~~~~-~~-----~~~~ 112 (352)
T PRK05437 39 ALPELDLDDIDLSTEFLGKKLSAPFLINAMTGGSEKAKEINRKLAEAAEELGIAMGVGSQRAALKDPE-LA-----DSFS 112 (352)
T ss_pred cCCCCChhhccceeeECCceecCCEEecccCCCChhHHHHHHHHHHHHHHcCCCeEecccHhhccChh-hH-----HHHH
Confidence 5689999999986 4699999999999996 58999999999999999999999986 3554 22 1334
Q ss_pred eEEeCCCCccccccccceeeccccccccccccCCCCCChHhhccc-cccccccccccCCCCCCCCCCCcccHHHHhhcCC
Q psy10999 133 AIKQGKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHA-DDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHS 211 (447)
Q Consensus 133 ~i~Q~~ly~~~~~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a-~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~~ 211 (447)
.++| +.|+.+++ +||+... . -|++.+.+..+ ++++ ..+...|+
T Consensus 113 ~vr~--~~p~~p~~-aNl~~~~---------~--~~~~~~~~~~~~~~~~----------------------adal~l~l 156 (352)
T PRK05437 113 VVRK--VAPDGLLF-ANLGAVQ---------L--YGYGVEEAQRAVEMIE----------------------ADALQIHL 156 (352)
T ss_pred HHHH--HCCCceEE-eecCccc---------c--CCCCHHHHHHHHHhcC----------------------CCcEEEeC
Confidence 5566 55655544 4444311 1 14444332211 1110 01112356
Q ss_pred CCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCcccc---
Q psy10999 212 VPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWT--- 288 (447)
Q Consensus 212 ~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~--- 288 (447)
++.+++++|+++++| ..|.+.|+++++.+ ++||+||.+...-...+|+.+.++|+|+|+|+|+ |||++++.+
T Consensus 157 ~~~qe~~~p~g~~~f---~~~le~i~~i~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg~-GGt~~~~ie~~R 231 (352)
T PRK05437 157 NPLQELVQPEGDRDF---RGWLDNIAEIVSAL-PVPVIVKEVGFGISKETAKRLADAGVKAIDVAGA-GGTSWAAIENYR 231 (352)
T ss_pred ccchhhcCCCCcccH---HHHHHHHHHHHHhh-CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECCC-CCCCccchhhhh
Confidence 788888999887765 35778899999987 6899999663111236788899999999999998 567665322
Q ss_pred --------ccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcc
Q psy10999 289 --------GIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKC 360 (447)
Q Consensus 289 --------~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c 360 (447)
...+||+|+..+|.++.+.+ .++|||++|||+++.|++|++++|||+|++||+||.++.
T Consensus 232 ~~~~~~~~~~~~~g~pt~~~l~~i~~~~------~~ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~------- 298 (352)
T PRK05437 232 ARDDRLASYFADWGIPTAQSLLEARSLL------PDLPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAAL------- 298 (352)
T ss_pred hhccccccccccccCCHHHHHHHHHHhc------CCCeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHH-------
Confidence 24578999999999998863 369999999999999999999999999999999998762
Q ss_pred cCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccccccccc
Q psy10999 361 HLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFKQE 422 (447)
Q Consensus 361 ~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~~~ 422 (447)
.+|+++|.++++.|.+||+.+|++ +|++++.++++.-+..
T Consensus 299 --------------------~~g~~~v~~~i~~~~~eL~~~m~~--~G~~~i~eL~~~~~~~ 338 (352)
T PRK05437 299 --------------------EGGEEAVIELIEQWIEELKIAMFL--TGAKNIAELRKVPLVL 338 (352)
T ss_pred --------------------hccHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHhCCCCEEe
Confidence 346899999999999999999999 9999999997665443
No 19
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=100.00 E-value=6.8e-33 Score=280.90 Aligned_cols=267 Identities=23% Similarity=0.243 Sum_probs=200.8
Q ss_pred CCCCCCCCCCcccc-----ccccceeecCCCccc-CcHHHHHHHHHHHHHhCCceeecCCC---CChhhhhccCCCCCCC
Q psy10999 62 HDKPVDISEVEPAA-----EIVKRFATGAMSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGG---ENPERYLSSGDENQRS 132 (447)
Q Consensus 62 ~~~~~~~~~v~~~~-----~i~~Pf~iaaMs~G~-ls~ea~~aLA~AA~~~G~~~~sGeg~---~~~e~~~~~~~~~~~~ 132 (447)
.-|+++++|||++. ++..||+++||++|+ .+.+++..||++|.++|+++++|+++ .++|... ...
T Consensus 31 ~l~~~~~~~id~s~~~~G~~l~~Pi~ia~mtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~e~~~------~~~ 104 (326)
T cd02811 31 ALPELDLDDIDLSTEFLGKRLSAPLLISAMTGGSEKAKEINRNLAEAAEELGIAMGVGSQRAALEDPELAE------SFT 104 (326)
T ss_pred cCCCCCcccCCCeeEECCceecCCEEEeCCCCCChHHHHHHHHHHHHHHHcCCCeEecCchhhccChhhhh------HHH
Confidence 56889999999874 599999999999996 47999999999999999999999984 2555321 223
Q ss_pred eEEeCCCCccccccccceeeccccccccccccCCCCCChHhhc------cccccccccccccCCCCCCCCCCCcccHHHH
Q psy10999 133 AIKQGKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLA------HADDLQIKMAQGAKPGEGGELPGYKVTKDIA 206 (447)
Q Consensus 133 ~i~Q~~ly~~~~~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~------~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia 206 (447)
.+++ ..|+.+.+ +|++... + -+.+.+.+. .++.++
T Consensus 105 ~vr~--~~~~~p~~-~Nl~~~~-------~----~~~~~~~~~~~i~~~~adale------------------------- 145 (326)
T cd02811 105 VVRE--APPNGPLI-ANLGAVQ-------L----NGYGVEEARRAVEMIEADALA------------------------- 145 (326)
T ss_pred HHHH--hCCCceEE-eecCccc-------c----CCCCHHHHHHHHHhcCCCcEE-------------------------
Confidence 4444 33433322 2333210 1 033433321 222222
Q ss_pred hhcCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCcc
Q psy10999 207 STRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASS 286 (447)
Q Consensus 207 ~~r~~~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~ 286 (447)
.|+++.+++++|++.++| +.|.+.|+++++.+ ++||+||.+...-...+|+.+.++|+|+|+|||+ |||+++.
T Consensus 146 --l~l~~~q~~~~~~~~~df---~~~~~~i~~l~~~~-~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG~-GGt~~~~ 218 (326)
T cd02811 146 --IHLNPLQEAVQPEGDRDF---RGWLERIEELVKAL-SVPVIVKEVGFGISRETAKRLADAGVKAIDVAGA-GGTSWAR 218 (326)
T ss_pred --EeCcchHhhcCCCCCcCH---HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCC-CCCcccc
Confidence 245677788888876654 45778899999876 6799999653211246788899999999999998 5554442
Q ss_pred c-------------cccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhc
Q psy10999 287 W-------------TGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMG 353 (447)
Q Consensus 287 ~-------------~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~alg 353 (447)
. ....+||+|+..+|+++.+.+ .++|||++|||+++.||+||++||||+|++||+||.++
T Consensus 219 ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~------~~ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~- 291 (326)
T cd02811 219 VENYRAKDSDQRLAEYFADWGIPTAASLLEVRSAL------PDLPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAA- 291 (326)
T ss_pred cccccccccccccccccccccccHHHHHHHHHHHc------CCCcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHH-
Confidence 1 334678999999999998764 26999999999999999999999999999999999876
Q ss_pred ccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccc
Q psy10999 354 CTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWL 416 (447)
Q Consensus 354 c~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~ 416 (447)
+. |+++|.++++.|.+||+.+|.+ +|++|+.+++
T Consensus 292 --------------------------~~-g~~~~~~~i~~~~~el~~~m~~--~G~~si~el~ 325 (326)
T cd02811 292 --------------------------LE-GEEAVIETIEQIIEELRTAMFL--TGAKNLAELK 325 (326)
T ss_pred --------------------------hc-CHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHhc
Confidence 23 6899999999999999999999 9999998875
No 20
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=99.97 E-value=1.8e-31 Score=271.27 Aligned_cols=277 Identities=19% Similarity=0.185 Sum_probs=202.3
Q ss_pred cCCCCCCCCCCccc-----cccccceeecCCCccc-CcHHHHHHHHHHHHHhCCceeecCCCC---ChhhhhccCCCCCC
Q psy10999 61 THDKPVDISEVEPA-----AEIVKRFATGAMSFGS-ISIEAHTTLAKAMNKIGAKSNTGEGGE---NPERYLSSGDENQR 131 (447)
Q Consensus 61 ~~~~~~~~~~v~~~-----~~i~~Pf~iaaMs~G~-ls~ea~~aLA~AA~~~G~~~~sGeg~~---~~e~~~~~~~~~~~ 131 (447)
.+-|++|+++||++ .++..||+++||++|+ ...+++..||++|++.|+++.+|+++. +++... ..
T Consensus 31 ~~lp~~~~~~~d~s~~~~g~~l~~Pi~iaaMtGg~~~~~~in~~La~~a~~~g~~~~~Gs~~~~~~~~~~~~------~~ 104 (333)
T TIGR02151 31 NALPEINLDDIDLTTEFLGKRLKAPFYINAMTGGSEEAGKINRNLARAARELGIPMGVGSQRAALKDPETAD------TF 104 (333)
T ss_pred CCCCCCCcccCCCceEECCccccCCEEEeCCCCCchhHHHHHHHHHHHHHHcCCCeEEcCchhhccChhhHh------HH
Confidence 35799999999986 4799999999999986 578999999999999999999999763 444311 12
Q ss_pred CeEEeCCCCccccccccceeeccccccccccccCCCCCChHhhc-cccccccccccccCCCCCCCCCCCcccHHHHhhcC
Q psy10999 132 SAIKQGKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLA-HADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRH 210 (447)
Q Consensus 132 ~~i~Q~~ly~~~~~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~-~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~ 210 (447)
..+++ ..|+.+++ +|++....+ ..+ .+... ..++++ ..+...|
T Consensus 105 ~~vr~--~~~~~p~i-~nl~~~~~~---------~~~--~~~~~~~i~~i~----------------------adal~i~ 148 (333)
T TIGR02151 105 EVVRE--EAPNGPLI-ANIGAPQLV---------EGG--PEEAQEAIDMIE----------------------ADALAIH 148 (333)
T ss_pred HHHHH--hCCCCcEE-eecCchhhc---------ccc--HHHHHHHHHHhc----------------------CCCEEEc
Confidence 33444 34443333 233321000 001 11111 111111 0112235
Q ss_pred CCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccc---
Q psy10999 211 SVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSW--- 287 (447)
Q Consensus 211 ~~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~--- 287 (447)
+++.+++++|+++++| +.|.+.|+++++.+ ++||+||.+...-....|+.+.++|+|+|+|+|++ ||++...
T Consensus 149 ln~~q~~~~p~g~~~f---~~~le~i~~i~~~~-~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg~g-Gt~~~~ie~~ 223 (333)
T TIGR02151 149 LNVLQELVQPEGDRNF---KGWLEKIAEICSQL-SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAGAG-GTSWAQVENY 223 (333)
T ss_pred CcccccccCCCCCcCH---HHHHHHHHHHHHhc-CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECCCC-CCcccchhhh
Confidence 5777888899988775 45778899999987 68999996531112357888999999999999974 5654431
Q ss_pred --------cccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhc
Q psy10999 288 --------TGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRK 359 (447)
Q Consensus 288 --------~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~ 359 (447)
.+..+||+|+...|.++.+. ..++|||++|||+++.|++|++++|||+|++||+||.++
T Consensus 224 r~~~~~~~~~~~~~g~~t~~~l~~~~~~------~~~ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~------- 290 (333)
T TIGR02151 224 RAKGSNLASFFNDWGIPTAASLLEVRSD------APDAPIIASGGLRTGLDVAKAIALGADAVGMARPFLKAA------- 290 (333)
T ss_pred cccccccchhhhcccHhHHHHHHHHHhc------CCCCeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHH-------
Confidence 23468899999999988751 236999999999999999999999999999999999865
Q ss_pred ccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccccc
Q psy10999 360 CHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDF 419 (447)
Q Consensus 360 c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~ 419 (447)
+..++++|.++++.+.+||+.+|.+ +|++|+.+++..-
T Consensus 291 --------------------~~~g~~~v~~~i~~~~~eL~~~m~~--~G~~~i~el~~~~ 328 (333)
T TIGR02151 291 --------------------LDEGEEAVIEEIELIIEELKVAMFL--TGAKTIAELKKVP 328 (333)
T ss_pred --------------------HhcCHHHHHHHHHHHHHHHHHHHHH--hCCCCHHHHccCC
Confidence 2347999999999999999999999 9999999987543
No 21
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=99.96 E-value=1.5e-28 Score=246.31 Aligned_cols=236 Identities=18% Similarity=0.171 Sum_probs=178.6
Q ss_pred CCCCccc-----cccccceeecCCCcccC-cHHHHHHHHHHHHHhCCceeecC-CCCChhhhhccCCCCCCCeEEeCCCC
Q psy10999 68 ISEVEPA-----AEIVKRFATGAMSFGSI-SIEAHTTLAKAMNKIGAKSNTGE-GGENPERYLSSGDENQRSAIKQGKLY 140 (447)
Q Consensus 68 ~~~v~~~-----~~i~~Pf~iaaMs~G~l-s~ea~~aLA~AA~~~G~~~~sGe-g~~~~e~~~~~~~~~~~~~i~Q~~ly 140 (447)
+++||+. .+++.||+|+||+++++ +++++..||++|++.|+++..|+ +..++|++... .....|.| +|
T Consensus 49 ~~~id~~~~~lg~~~~~Pi~iapm~g~~~~~~~~~~~la~aa~~~g~~~~~~~~~~~~~~~i~~~---~~~~~~~q--l~ 123 (299)
T cd02809 49 VSKRDTSTTLLGQKLAMPFGIAPTGLQGLAHPDGELATARAAAAAGIPFTLSTVSTTSLEEVAAA---APGPRWFQ--LY 123 (299)
T ss_pred CCCCCCceEECCeecCCCeeeCcccccccCCchHHHHHHHHHHHcCCCEEecCCCcCCHHHHHHh---cCCCeEEE--Ee
Confidence 5666654 45689999999998887 89999999999999999987665 55677776543 23567889 44
Q ss_pred cc-ccccccceeeccccccccccccCCCCCChHhhc-----cccccccccccccCCCCCCCCCCCcccHHHHhhcCCCCc
Q psy10999 141 PK-TYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLA-----HADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPG 214 (447)
Q Consensus 141 ~~-~~~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~-----~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~~~~g 214 (447)
.. .. ....+.+. .++.|++.+.
T Consensus 124 ~~~~~-----------------------~~~~~~i~~~~~~g~~~i~l~~~----------------------------- 151 (299)
T cd02809 124 VPRDR-----------------------EITEDLLRRAEAAGYKALVLTVD----------------------------- 151 (299)
T ss_pred ecCCH-----------------------HHHHHHHHHHHHcCCCEEEEecC-----------------------------
Confidence 21 00 00001111 1122222221
Q ss_pred ccccCCC-CCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccC
Q psy10999 215 VGLISPP-PHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNA 293 (447)
Q Consensus 215 ~~lisp~-~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~ 293 (447)
.|. ..+ . +.+.|+++|+.++ .||+||.+ ....+|+.+.++|+|+|+|+||+|+ ..++
T Consensus 152 ----~p~~~~~--~----~~~~i~~l~~~~~-~pvivK~v---~s~~~a~~a~~~G~d~I~v~~~gG~--------~~~~ 209 (299)
T cd02809 152 ----TPVLGRR--L----TWDDLAWLRSQWK-GPLILKGI---LTPEDALRAVDAGADGIVVSNHGGR--------QLDG 209 (299)
T ss_pred ----CCCCCCC--C----CHHHHHHHHHhcC-CCEEEeec---CCHHHHHHHHHCCCCEEEEcCCCCC--------CCCC
Confidence 000 001 1 2367899999874 69999954 3457889999999999999999664 3468
Q ss_pred CCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccC
Q psy10999 294 GLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQD 373 (447)
Q Consensus 294 G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~ 373 (447)
|+|+...|+++.+.+ .+++|||++|||+++.|++||++||||+|++||+||+++.+.
T Consensus 210 g~~~~~~l~~i~~~~-----~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~------------------ 266 (299)
T cd02809 210 APATIDALPEIVAAV-----GGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAG------------------ 266 (299)
T ss_pred CcCHHHHHHHHHHHh-----cCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhc------------------
Confidence 999999999998875 236999999999999999999999999999999999987654
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccc
Q psy10999 374 PELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWL 416 (447)
Q Consensus 374 ~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~ 416 (447)
|.+++.++++.+.+||+.+|.+ +|++++.+++
T Consensus 267 ---------g~~~v~~~i~~l~~el~~~m~~--~G~~~i~~l~ 298 (299)
T cd02809 267 ---------GEAGVAHVLEILRDELERAMAL--LGCASLADLD 298 (299)
T ss_pred ---------CHHHHHHHHHHHHHHHHHHHHH--HCCCCHHHhC
Confidence 5899999999999999999999 9999998875
No 22
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.88 E-value=1.6e-21 Score=197.17 Aligned_cols=267 Identities=15% Similarity=0.088 Sum_probs=176.6
Q ss_pred CCCCCCCCCCcccc-----ccccceeecCCCcccCcHHHHHHHHHHHHHhCCceeecCCCCChhhhhccCCCCCCCeEEe
Q psy10999 62 HDKPVDISEVEPAA-----EIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQ 136 (447)
Q Consensus 62 ~~~~~~~~~v~~~~-----~i~~Pf~iaaMs~G~ls~ea~~aLA~AA~~~G~~~~sGeg~~~~e~~~~~~~~~~~~~i~Q 136 (447)
..|+++++||+++. ++..||+|++|. ..+++.||++|++.|.....=- +++|+... .+++
T Consensus 16 ~lp~~s~~dvdlst~~~~~~l~~P~~inAM~-----t~iN~~LA~~a~~~G~~~~~~k--~~~e~~~~--------~~r~ 80 (326)
T PRK05458 16 KCIVNSRSECDTSVTLGPRTFKLPVVPANMQ-----TIIDEKIAEWLAENGYFYIMHR--FDPEARIP--------FIKD 80 (326)
T ss_pred CCCCCCHHHcccceEECCcEecCcEEEeccc-----chhHHHHHHHHHHcCCEEEEec--CCHHHHHH--------HHHh
Confidence 45889999999764 588999999994 3899999999999976643322 34544221 1122
Q ss_pred CCCCccccccccceeeccccccccccccCCCCCChHhhccccccccccccccCCCCCCCCCCCcccHHHHhhcCCCCccc
Q psy10999 137 GKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVG 216 (447)
Q Consensus 137 ~~ly~~~~~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~~~~g~~ 216 (447)
..|..+ + ++ ++ -|++++++..++. +.....+.+
T Consensus 81 --~~~~~l-~-v~------------~~---vg~~~~~~~~~~~----------------------------Lv~ag~~~d 113 (326)
T PRK05458 81 --MHEQGL-I-AS------------IS---VGVKDDEYDFVDQ----------------------------LAAEGLTPE 113 (326)
T ss_pred --cccccc-E-EE------------EE---ecCCHHHHHHHHH----------------------------HHhcCCCCC
Confidence 112111 0 00 11 1444433222211 100000112
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCC
Q psy10999 217 LISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP 296 (447)
Q Consensus 217 lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p 296 (447)
.+.-...| ...+...++|++||+.+|++||++| +++....+..+.++|+|+|.|++++|+...... ....+.|
T Consensus 114 ~i~iD~a~--gh~~~~~e~I~~ir~~~p~~~vi~g---~V~t~e~a~~l~~aGad~i~vg~~~G~~~~t~~--~~g~~~~ 186 (326)
T PRK05458 114 YITIDIAH--GHSDSVINMIQHIKKHLPETFVIAG---NVGTPEAVRELENAGADATKVGIGPGKVCITKI--KTGFGTG 186 (326)
T ss_pred EEEEECCC--CchHHHHHHHHHHHhhCCCCeEEEE---ecCCHHHHHHHHHcCcCEEEECCCCCccccccc--ccCCCCC
Confidence 22211111 0124466789999999999999888 556778899999999999999888664422211 1123456
Q ss_pred --hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCH
Q psy10999 297 --WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDP 374 (447)
Q Consensus 297 --~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~ 374 (447)
.+.++.++.+.+ ++|||++|||+++.||+|||++|||+|++|++|+-+ .+.|..+...+.
T Consensus 187 ~w~l~ai~~~~~~~-------~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~-----------~espg~~~~~~g 248 (326)
T PRK05458 187 GWQLAALRWCAKAA-------RKPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGH-----------EESPGKTVEIDG 248 (326)
T ss_pred ccHHHHHHHHHHHc-------CCCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCC-----------ccCCCceeeecc
Confidence 555677777653 599999999999999999999999999999998743 455666665555
Q ss_pred HHHhhcC--------------CcHH-------HHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 375 ELRKKFA--------------GKPE-------HVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 375 ~l~~~~~--------------~g~~-------~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
++.+.+. +|.+ .+.+++..|..+||..|.. +|++++.+++.
T Consensus 249 ~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~l~~~l~~l~~gLr~~m~~--~Ga~~i~el~~ 310 (326)
T PRK05458 249 KLYKEYFGSASEFQKGEYKNVEGKKILVPHKGSLKDTLTEMEQDLQSSISY--AGGRDLDAIRK 310 (326)
T ss_pred hhHHHhhCcHhhhccccccccCCceEEecccCCHHHHHHHHHHHHHHHHHH--hCCCCHHHHhc
Confidence 5444332 3334 6889999999999999999 99999998863
No 23
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=99.85 E-value=2.6e-20 Score=187.76 Aligned_cols=268 Identities=15% Similarity=0.111 Sum_probs=176.7
Q ss_pred CCCCCCCCCCcccc-----ccccceeecCCCcccCcHHHHHHHHHHHHHhCCceeecCCCCChhhhhccCCCCCCCeEEe
Q psy10999 62 HDKPVDISEVEPAA-----EIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQ 136 (447)
Q Consensus 62 ~~~~~~~~~v~~~~-----~i~~Pf~iaaMs~G~ls~ea~~aLA~AA~~~G~~~~sGeg~~~~e~~~~~~~~~~~~~i~Q 136 (447)
..|.++++|||++. .+..||+|++|. ..+++.||++|++.|.....-. .++|+... .+++
T Consensus 13 ~lp~~s~~dVdlst~~~~~~l~~P~~inAM~-----t~in~~LA~~a~~~G~~~i~hK--~~~E~~~s--------fvrk 77 (321)
T TIGR01306 13 KCIVNSRSECDTSVTLGKHKFKLPVVPANMQ-----TIIDEKLAEQLAENGYFYIMHR--FDEESRIP--------FIKD 77 (321)
T ss_pred CCCCCCHHHceeeEEECCcEecCcEEeeccc-----hhhhHHHHHHHHHcCCEEEEec--CCHHHHHH--------HHHh
Confidence 35788999999764 589999999994 4899999999999988765544 35655321 1233
Q ss_pred CCCCccccccccceeeccccccccccccCCCCCChHhhccccccccccccccCCCCCCCCCCCcccHHHHhhcCCCCccc
Q psy10999 137 GKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVG 216 (447)
Q Consensus 137 ~~ly~~~~~~~~lv~t~d~p~~~~rv~s~rfGv~~~~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~~~~g~~ 216 (447)
..+..+. ++ ++ -|.+++++.....+ +.+| ...+
T Consensus 78 --~k~~~L~--v~------------~S---vG~t~e~~~r~~~l---v~a~-------------------------~~~d 110 (321)
T TIGR01306 78 --MQERGLF--AS------------IS---VGVKACEYEFVTQL---AEEA-------------------------LTPE 110 (321)
T ss_pred --ccccccE--EE------------EE---cCCCHHHHHHHHHH---HhcC-------------------------CCCC
Confidence 1111110 00 11 15565543222110 1000 0012
Q ss_pred ccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCC-
Q psy10999 217 LISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGL- 295 (447)
Q Consensus 217 lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~- 295 (447)
.+.-...|. +| ....+.|++||+.+|...|+++ +++...+|+.+.++|||+|+|+.+.|++.++.... ..|.
T Consensus 111 ~i~~D~ahg-~s-~~~~~~i~~i~~~~p~~~vi~G---nV~t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~--g~g~~ 183 (321)
T TIGR01306 111 YITIDIAHG-HS-NSVINMIKHIKTHLPDSFVIAG---NVGTPEAVRELENAGADATKVGIGPGKVCITKIKT--GFGTG 183 (321)
T ss_pred EEEEeCccC-ch-HHHHHHHHHHHHhCCCCEEEEe---cCCCHHHHHHHHHcCcCEEEECCCCCccccceeee--ccCCC
Confidence 111111111 12 3356889999999976334444 34677899999999999999997778877665532 2233
Q ss_pred -ChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCH
Q psy10999 296 -PWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDP 374 (447)
Q Consensus 296 -p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~ 374 (447)
|.+.++.++.+++ ++|||+|||||++.||+|||++|||+|++|++|.- +.++|-.+...+.
T Consensus 184 ~~~l~ai~ev~~a~-------~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag-----------~~Espg~~~~~~g 245 (321)
T TIGR01306 184 GWQLAALRWCAKAA-------RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAG-----------HEESPGETVEKDG 245 (321)
T ss_pred chHHHHHHHHHHhc-------CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcC-----------cccCCCceEeeCC
Confidence 3577888888753 59999999999999999999999999999997642 3456666665554
Q ss_pred HHHhhcCC-------c----H----------HHHHHHHHHHHHHHHHHHhhhCCCCCCccccccc
Q psy10999 375 ELRKKFAG-------K----P----------EHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGD 418 (447)
Q Consensus 375 ~l~~~~~~-------g----~----------~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~ 418 (447)
++.+.|.+ + . -.|.+++..+...||..|.- +|++++.+++.-
T Consensus 246 ~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~~--~G~~~l~~~~~~ 308 (321)
T TIGR01306 246 KLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGSLSDTLIEMQQDLQSSISY--AGGKDLDSLRTV 308 (321)
T ss_pred eEHhhhcCchhhhcccccccccceEEEeccCCCHHHHHHHHHHHHHHHHHh--cCCCcHHHHhhC
Confidence 43333311 0 0 13788999999999999999 999999888743
No 24
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.77 E-value=6.3e-18 Score=175.16 Aligned_cols=166 Identities=19% Similarity=0.148 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+.+.+.|+++|+.+|+.+|+++.| .....|+.+.++|||+|.| |.+.|+..... ....+|.|.+.++.++.+.+.
T Consensus 179 ~~~~~~v~~ik~~~p~~~vi~g~V---~T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr-~~~g~g~p~ltai~~v~~~~~ 253 (404)
T PRK06843 179 TRIIELVKKIKTKYPNLDLIAGNI---VTKEAALDLISVGADCLKV-GIGPGSICTTR-IVAGVGVPQITAICDVYEVCK 253 (404)
T ss_pred hhHHHHHHHHHhhCCCCcEEEEec---CCHHHHHHHHHcCCCEEEE-CCCCCcCCcce-eecCCCCChHHHHHHHHHHHh
Confidence 446788999999999999989844 3567888999999999998 77666533222 134568899999999988775
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcC--------
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA-------- 381 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~-------- 381 (447)
+. .+|||+||||+++.||+|||+|||++|++|++|.-+ .+||..+...+++..|.|.
T Consensus 254 ~~----~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt-----------~Espg~~~~~~g~~~K~yrGmgS~~Am 318 (404)
T PRK06843 254 NT----NICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT-----------KESPSEEIIYNGKKFKSYVGMGSISAM 318 (404)
T ss_pred hc----CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeee-----------ecCCCcEEEECCEEEEEEeccchHHHH
Confidence 43 499999999999999999999999999999988643 4566666655543322221
Q ss_pred ---------------------CcHH-------HHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 382 ---------------------GKPE-------HVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 382 ---------------------~g~~-------~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
+|-+ -|.+++..+...||..|.- +|+.++.+++.
T Consensus 319 ~~~~~~ry~~~~~~~~~~~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y--~Ga~~i~el~~ 380 (404)
T PRK06843 319 KRGSKSRYFQLENNEPKKLVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGY--LGAATISDLKI 380 (404)
T ss_pred hccccccccccccccccccCCCccEEEecCCCCHHHHHHHHHHHHHHHhhc--cCCCcHHHHHh
Confidence 1111 1788999999999999999 99999998863
No 25
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=99.77 E-value=8.3e-18 Score=170.79 Aligned_cols=167 Identities=20% Similarity=0.123 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+.+.+.|+++|+..|+++|++. .+.....|+.+.++|||+|+|.+. +|+++... ....+|.|+..+|.++.+++.
T Consensus 120 ~~~~~~i~~ik~~~p~v~Vi~G---~v~t~~~A~~l~~aGaD~I~vg~g-~G~~~~t~-~~~g~g~p~~~~i~~v~~~~~ 194 (325)
T cd00381 120 VYVIEMIKFIKKKYPNVDVIAG---NVVTAEAARDLIDAGADGVKVGIG-PGSICTTR-IVTGVGVPQATAVADVAAAAR 194 (325)
T ss_pred HHHHHHHHHHHHHCCCceEEEC---CCCCHHHHHHHHhcCCCEEEECCC-CCcCcccc-eeCCCCCCHHHHHHHHHHHHh
Confidence 4567889999998776677664 334567888999999999999543 33333221 134678999999999998875
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhc---------
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKF--------- 380 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~--------- 380 (447)
.. ++|||++|||+++.|++||+++||++|++||.|+.+.+|. ..+...++...+.|
T Consensus 195 ~~----~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~-----------g~~~~~~g~~~~~~~g~~s~~~~ 259 (325)
T cd00381 195 DY----GVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESP-----------GEYIEINGKRYKEYRGMGSLGAM 259 (325)
T ss_pred hc----CCcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCC-----------CcEEEECCeeeeeEecccchhhh
Confidence 43 5999999999999999999999999999999998766544 34443332221111
Q ss_pred -----------------CCc-------HHHHHHHHHHHHHHHHHHHhhhCCCCCCccccccc
Q psy10999 381 -----------------AGK-------PEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGD 418 (447)
Q Consensus 381 -----------------~~g-------~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~ 418 (447)
.+| .-.+.+.+..+...||..|.- +|+.++.+++..
T Consensus 260 ~~~~~~~~~~~~~~~~~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y--~G~~~l~~~~~~ 319 (325)
T cd00381 260 KKGGGDRYFGEEAKKLVPEGVEGIVPYKGSVKDVLPQLVGGLRSSMGY--CGAKSLKELQEK 319 (325)
T ss_pred hcCccccccccccccccCCceEEEEecCCcHHHHHHHHHHHHHHHHHh--cCCCcHHHHHhc
Confidence 111 123788999999999999999 999999988643
No 26
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.74 E-value=2.5e-17 Score=169.62 Aligned_cols=169 Identities=20% Similarity=0.189 Sum_probs=118.6
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh-
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL- 310 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~- 310 (447)
|.++++.+++ . ++||+++. +....+|+.+.++|||+|.| |.++|++.... ....+|+|+..++.++.++.++
T Consensus 176 ~~~i~~~ik~-~-~ipVIaG~---V~t~e~A~~l~~aGAD~V~V-G~G~Gs~~~t~-~~~g~g~p~~~ai~~~~~a~~~~ 248 (368)
T PRK08649 176 PLNLKEFIYE-L-DVPVIVGG---CVTYTTALHLMRTGAAGVLV-GIGPGAACTSR-GVLGIGVPMATAIADVAAARRDY 248 (368)
T ss_pred HHHHHHHHHH-C-CCCEEEeC---CCCHHHHHHHHHcCCCEEEE-CCCCCcCCCCc-ccCCCCcCHHHHHHHHHHHHHHh
Confidence 4333444444 2 67888752 23567888888999999988 55555333221 1345789999999998765432
Q ss_pred ---cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcC---CcH
Q psy10999 311 ---NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA---GKP 384 (447)
Q Consensus 311 ---~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~---~g~ 384 (447)
.+.+ ++|||+||||+++.|++|||+||||+|++||+|+.+.+|.+ ..+.+|+++.++.+-+... .-.
T Consensus 249 l~~~~~~-~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg------~~~~~gm~s~~~~~~eg~~~~~~~~ 321 (368)
T PRK08649 249 LDETGGR-YVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG------RGWHWGMAAPHPSLPRGTRIKVGTT 321 (368)
T ss_pred hhhhcCC-CCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCC------cccccCcccCCCcCCCceEEeCCCc
Confidence 2322 59999999999999999999999999999999998887765 3366666665433221110 001
Q ss_pred HHHHHHHH----------HHHHHHHHHHhhhCCCCCCccccc
Q psy10999 385 EHVINYLF----------MLAEEVSRDYRAESPGFDFPLVWL 416 (447)
Q Consensus 385 ~~V~~~l~----------~l~~Elr~~M~l~~~G~~s~~~l~ 416 (447)
--|.+.+. .+...||..|.- +|++++.+++
T Consensus 322 g~~~~~~~~~~~~~~~~~~~~g~l~~~m~~--~g~~~~~~~~ 361 (368)
T PRK08649 322 GSLEQILFGPSHLPDGTHNLVGALRRSMAT--LGYSDLKEFQ 361 (368)
T ss_pred CcHHHHhcCcccccchHHHHHHHHHHHHHh--cCCCcHHHHh
Confidence 12556655 788899999999 9999988875
No 27
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=99.72 E-value=6.5e-17 Score=162.71 Aligned_cols=175 Identities=16% Similarity=0.064 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
...+.|++||+.||+ +.++|+ .+...++|+.+.++|||+|.|+ -|.|+..+.. .....|.|.+.+|+++.++...
T Consensus 136 ~~i~~ik~ir~~~p~-~~viaG--NV~T~e~a~~Li~aGAD~ikVg-iGpGSicttR-~~~Gvg~pqltAv~~~a~aa~~ 210 (343)
T TIGR01305 136 HFVEFVKLVREAFPE-HTIMAG--NVVTGEMVEELILSGADIVKVG-IGPGSVCTTR-TKTGVGYPQLSAVIECADAAHG 210 (343)
T ss_pred HHHHHHHHHHhhCCC-CeEEEe--cccCHHHHHHHHHcCCCEEEEc-ccCCCcccCc-eeCCCCcCHHHHHHHHHHHhcc
Confidence 356889999999998 666773 1235678999999999999997 2222222211 1456788999999999998642
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCC--------
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG-------- 382 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~-------- 382 (447)
. ++|||+||||+++.||+|||++|||+|++|..|.- ..++|..+...+++..+.|.+
T Consensus 211 ~----~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG-----------~~Espg~~i~~~G~~~K~yrGMgS~~Am~ 275 (343)
T TIGR01305 211 L----KGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAG-----------HTESGGEVIERNGRKFKLFYGMSSDTAMK 275 (343)
T ss_pred C----CCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhC-----------cCcCcceeEeECCEEEEEEeccchHHHHh
Confidence 2 59999999999999999999999999999954322 346677777666554443321
Q ss_pred -------------cH-------HHHHHHHHHHHHHHHHHHhhhCCCCCCccccc--ccccccccccc
Q psy10999 383 -------------KP-------EHVINYLFMLAEEVSRDYRAESPGFDFPLVWL--GDFKQEGDQLS 427 (447)
Q Consensus 383 -------------g~-------~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~--~~~~~~~~~~~ 427 (447)
|. -.|.+++..+...||..|.- +|+.++.+++ .++++..+|..
T Consensus 276 ~~~g~~~ry~~~EG~e~~vp~kG~v~~~l~~l~gGlrs~m~Y--~Ga~~i~el~~~a~fv~vt~~~~ 340 (343)
T TIGR01305 276 KHAGGVAEYRASEGKTVEVPYRGDVENTILDILGGLRSACTY--VGAAKLKELSKRATFIRVTQQHN 340 (343)
T ss_pred hccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHhhc--cCcCcHHHHHhCCEEEEECcccc
Confidence 00 13788899999999999999 9999999984 66666665554
No 28
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.69 E-value=1.9e-16 Score=169.07 Aligned_cols=163 Identities=21% Similarity=0.131 Sum_probs=125.8
Q ss_pred HHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 233 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 233 ~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
++.|++||+.+|+++|+++ .+....+++.+.++|||+|.|....|+++.++. ..++|.|...++.++.+.+.+.
T Consensus 270 ~~~i~~ik~~~~~~~v~aG---~V~t~~~a~~~~~aGad~I~vg~g~Gs~~~t~~--~~~~g~p~~~ai~~~~~~~~~~- 343 (495)
T PTZ00314 270 IDMIKKLKSNYPHVDIIAG---NVVTADQAKNLIDAGADGLRIGMGSGSICITQE--VCAVGRPQASAVYHVARYARER- 343 (495)
T ss_pred HHHHHHHHhhCCCceEEEC---CcCCHHHHHHHHHcCCCEEEECCcCCcccccch--hccCCCChHHHHHHHHHHHhhc-
Confidence 4789999999998888887 334567889999999999999655555554443 3478999999999999988654
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhc------------
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKF------------ 380 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~------------ 380 (447)
.+|||+||||+|+.|++||+++||++|++|+.|.-+.+| |..+...+++..|.|
T Consensus 344 ---~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~-----------~~~~~~~~g~~~k~yrGm~s~~a~~~~ 409 (495)
T PTZ00314 344 ---GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEA-----------PGEYFFKDGVRLKVYRGMGSLEAMLSK 409 (495)
T ss_pred ---CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhcccccc-----------CCceeeeCCeEEEEEeccchHHHhhcc
Confidence 499999999999999999999999999999998654444 333333322211111
Q ss_pred ---------------CCcH-------HHHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 381 ---------------AGKP-------EHVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 381 ---------------~~g~-------~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
.+|- ..|.+++..+..+||..|.- +|+.++.+++.
T Consensus 410 ~~~~~y~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y--~g~~~i~~~~~ 466 (495)
T PTZ00314 410 ESGERYLDENETIKVAQGVSGSVVDKGSVAKLIPYLVKGVKHGMQY--IGAHSIPELHE 466 (495)
T ss_pred cccccccccccccccCCceEEeeecCCcHHHHHHHHHHHHHHHHHh--hCCCcHHHHHh
Confidence 1111 23889999999999999999 99999999876
No 29
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=99.67 E-value=6.6e-16 Score=155.43 Aligned_cols=178 Identities=18% Similarity=0.090 Sum_probs=141.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
...+.|+++|+.+|+++|+.- .+....-++.+.++|||+|.| |-|-|+-++... .-..|.|.+.++.++.++..+
T Consensus 137 ~~i~~ik~ik~~~P~~~vIaG---NV~T~e~a~~Li~aGAD~vKV-GIGpGSiCtTr~-vtGvG~PQltAV~~~a~~a~~ 211 (346)
T PRK05096 137 HFVQFVAKAREAWPDKTICAG---NVVTGEMVEELILSGADIVKV-GIGPGSVCTTRV-KTGVGYPQLSAVIECADAAHG 211 (346)
T ss_pred HHHHHHHHHHHhCCCCcEEEe---cccCHHHHHHHHHcCCCEEEE-cccCCccccCcc-ccccChhHHHHHHHHHHHHHH
Confidence 356889999999999888776 344567778899999999998 776666655443 346789999999999998876
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCC-c------
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG-K------ 383 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~-g------ 383 (447)
.| +|||+||||++..||+|||++|||+|++|+.|-- +.++|-.+...++++.+.|.+ +
T Consensus 212 ~g----vpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAG-----------t~EsPGe~~~~~G~~~K~yrGMgS~~Am~ 276 (346)
T PRK05096 212 LG----GQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAG-----------HEESGGEIVEENGEKFMLFYGMSSESAMK 276 (346)
T ss_pred cC----CCEEecCCcccccHHHHHHHcCCCEEEeChhhcC-----------cccCCCcEEEECCEEEEEEeccccHHHHh
Confidence 54 8999999999999999999999999999996532 457888887777655444421 0
Q ss_pred -----------HH----------HHHHHHHHHHHHHHHHHhhhCCCCCCcccc--ccccccccccccccc
Q psy10999 384 -----------PE----------HVINYLFMLAEEVSRDYRAESPGFDFPLVW--LGDFKQEGDQLSLVW 430 (447)
Q Consensus 384 -----------~~----------~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l--~~~~~~~~~~~~~~~ 430 (447)
+| .|.+++..+...||..|.- +|+.++.+| +.++++..+|+..+|
T Consensus 277 ~~~g~~~ry~~~EG~~~~Vp~kG~v~~~i~~l~gGlrs~m~Y--~Ga~~i~el~~~a~fv~vt~q~n~~~ 344 (346)
T PRK05096 277 RHVGGVAEYRAAEGKTVKLPLRGPVENTARDILGGLRSACTY--VGASRLKELTKRTTFIRVQEQENRVF 344 (346)
T ss_pred hccCcccccccccCceEEeccCCcHHHHHHHHHHHHHHHHcc--cCcCcHHHHHhCCeEEEEChhhcccc
Confidence 11 2788999999999999999 999999998 477788877776554
No 30
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.65 E-value=1.6e-15 Score=160.38 Aligned_cols=165 Identities=19% Similarity=0.135 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+.+.+.|+++|+.+|++||+++-+ .....|+.+.++|||+|.|+-+.|+++.++. ...+|.|...++.++++++.
T Consensus 250 ~~~~~~i~~i~~~~~~~~vi~G~v---~t~~~a~~l~~aGad~i~vg~g~G~~~~t~~--~~~~g~p~~~~i~~~~~~~~ 324 (450)
T TIGR01302 250 IYVIDSIKEIKKTYPDLDIIAGNV---ATAEQAKALIDAGADGLRVGIGPGSICTTRI--VAGVGVPQITAVYDVAEYAA 324 (450)
T ss_pred hHHHHHHHHHHHhCCCCCEEEEeC---CCHHHHHHHHHhCCCEEEECCCCCcCCccce--ecCCCccHHHHHHHHHHHHh
Confidence 457789999999989999999843 3567888999999999999645565655443 45789999999999999876
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhh----------
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKK---------- 379 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~---------- 379 (447)
+. ++|||+||||+++.||+|||++||++|++|+.|.-+. +||-.+..++++..|.
T Consensus 325 ~~----~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~-----------e~pg~~~~~~g~~~k~yrgm~s~~a~ 389 (450)
T TIGR01302 325 QS----GIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTT-----------ESPGEYEIINGRRYKQYRGMGSLGAM 389 (450)
T ss_pred hc----CCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCC-----------cCCCceEEECCEEEEEEeccchHHHH
Confidence 43 5999999999999999999999999999999886544 4454544443322111
Q ss_pred ------------------cCCcH-------HHHHHHHHHHHHHHHHHHhhhCCCCCCccccc
Q psy10999 380 ------------------FAGKP-------EHVINYLFMLAEEVSRDYRAESPGFDFPLVWL 416 (447)
Q Consensus 380 ------------------~~~g~-------~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~ 416 (447)
+.+|- -.|.+++..+...||..|.- +|+.++.+++
T Consensus 390 ~~~~~~ry~~~~~~~~~~~~egv~~~~~~~g~~~~~~~~~~~g~~~~~~~--~g~~~~~~~~ 449 (450)
T TIGR01302 390 TKGSSDRYLQDENKTKKFVPEGVEGAVPYKGSVLELLPQLVGGLKSGMGY--VGARSIDELR 449 (450)
T ss_pred hccccccccccccccccccCCceEEcccccCcHHHHHHHHHHHHHHhhhc--cCcCcHHHHh
Confidence 12221 13788999999999999999 9999988774
No 31
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.63 E-value=2.9e-15 Score=159.78 Aligned_cols=165 Identities=16% Similarity=0.141 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+.+.+.|++||+.+|++||+++-+ ....+|..+.++|||+|.|.+ ++|+..... ....||.|+..+|.++.+++.
T Consensus 254 ~~vl~~i~~i~~~~p~~~vi~g~v---~t~e~a~~l~~aGad~i~vg~-g~gs~~~~r-~~~~~g~p~~~~~~~~~~~~~ 328 (486)
T PRK05567 254 EGVLDRVREIKAKYPDVQIIAGNV---ATAEAARALIEAGADAVKVGI-GPGSICTTR-IVAGVGVPQITAIADAAEAAK 328 (486)
T ss_pred hhHHHHHHHHHhhCCCCCEEEecc---CCHHHHHHHHHcCCCEEEECC-CCCccccce-eecCCCcCHHHHHHHHHHHhc
Confidence 457788999999999999999833 356788999999999999844 444433322 256899999999999998764
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhh----------
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKK---------- 379 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~---------- 379 (447)
+ .++|||+||||+++.|++||++||||+|++|++|--+. ++|-.+...+++..|.
T Consensus 329 ~----~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~-----------e~pg~~~~~~g~~~k~y~gm~s~~a~ 393 (486)
T PRK05567 329 K----YGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTE-----------EAPGEVELYQGRSYKSYRGMGSLGAM 393 (486)
T ss_pred c----CCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccc-----------cCCCceEEECCEEEEEEeccchHHHH
Confidence 3 25999999999999999999999999999999875443 4454444432221111
Q ss_pred ------------------cCCcH-------HHHHHHHHHHHHHHHHHHhhhCCCCCCccccc
Q psy10999 380 ------------------FAGKP-------EHVINYLFMLAEEVSRDYRAESPGFDFPLVWL 416 (447)
Q Consensus 380 ------------------~~~g~-------~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~ 416 (447)
+.+|. -.|.+++..+...||..|.- +|+.++.+++
T Consensus 394 ~~~~~~r~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~--~g~~~~~~~~ 453 (486)
T PRK05567 394 SKGSSDRYFQSVNAADKLVPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGY--TGAATIEELR 453 (486)
T ss_pred hcccccccccccccccccCCCceEEeCCCCCCHHHHHHHHHHHHHHHHHh--cCcCcHHHHH
Confidence 11111 13788999999999999999 9999998886
No 32
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=99.61 E-value=1.7e-15 Score=154.08 Aligned_cols=104 Identities=26% Similarity=0.279 Sum_probs=76.7
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.++.+++. ++ |++..++....|+.+.++|+|+|+++|+++|+|... +.+ ++...++++.+.+
T Consensus 127 ~~i~~l~~~--gi----~v~~~v~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~-----~~~-~~~~L~~~v~~~~----- 189 (330)
T PF03060_consen 127 EVIERLHAA--GI----KVIPQVTSVREARKAAKAGADAIVAQGPEAGGHRGF-----EVG-STFSLLPQVRDAV----- 189 (330)
T ss_dssp HHHHHHHHT--T-----EEEEEESSHHHHHHHHHTT-SEEEEE-TTSSEE--------SSG--HHHHHHHHHHH------
T ss_pred HHHHHHHHc--CC----ccccccCCHHHHHHhhhcCCCEEEEeccccCCCCCc-----ccc-ceeeHHHHHhhhc-----
Confidence 457777775 44 444445677889999999999999999999987651 112 6788888988875
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccc
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTM 356 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~ 356 (447)
++|||++|||.++++++.||+||||+|+|||+|+.+.+|.-
T Consensus 190 --~iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~ 230 (330)
T PF03060_consen 190 --DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGA 230 (330)
T ss_dssp --SS-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS-S
T ss_pred --CCcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccccC
Confidence 59999999999999999999999999999999999988876
No 33
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.61 E-value=6.1e-15 Score=157.56 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=123.1
Q ss_pred HHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh--
Q psy10999 233 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL-- 310 (447)
Q Consensus 233 ~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~-- 310 (447)
.+.|+++|+.||+ ++.|+.. .+....+|+.+.++|||+|.|+.+ +|+-++... +.+.|.|...++.++.+++.+
T Consensus 271 ~~~i~~ir~~~~~-~~~V~aG-nV~t~e~a~~li~aGAd~I~vg~g-~Gs~c~tr~-~~~~g~~~~~ai~~~~~a~~~~~ 346 (502)
T PRK07107 271 KRTLDWIREKYGD-SVKVGAG-NVVDREGFRYLAEAGADFVKVGIG-GGSICITRE-QKGIGRGQATALIEVAKARDEYF 346 (502)
T ss_pred HHHHHHHHHhCCC-CceEEec-cccCHHHHHHHHHcCCCEEEECCC-CCcCccccc-ccCCCccHHHHHHHHHHHHHHHH
Confidence 5789999999974 4555521 223456888999999999999665 444443322 356789999999999997643
Q ss_pred --cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcC-------
Q psy10999 311 --NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA------- 381 (447)
Q Consensus 311 --~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~------- 381 (447)
+| .++|||+|||||++.||+||||+|||+|++|++|--+ .++|-.+..+++++.+.|.
T Consensus 347 ~~~g--~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~-----------~espg~~~~~~g~~~k~yrgm~s~~a 413 (502)
T PRK07107 347 EETG--VYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARF-----------DESPTNKVNINGNYMKEYWGEGSNRA 413 (502)
T ss_pred hhcC--CcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhcc-----------ccCCCcEEEECCEEEEEeecccCHhh
Confidence 24 2499999999999999999999999999999987543 4566665555443322221
Q ss_pred -----------------CcHH-------HHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 382 -----------------GKPE-------HVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 382 -----------------~g~~-------~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
+|.+ .|.+++..+...||..|.- +|+.++.+++.
T Consensus 414 ~~~~ry~~~~~~~~~~~egv~~~v~~~g~~~~~~~~~~~glrs~~~y--~g~~~i~~l~~ 471 (502)
T PRK07107 414 RNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAITLSKVRSTMCN--CGALSIPELQQ 471 (502)
T ss_pred hhccccccccccccccCCccEEEecCCCCHHHHHHHHHHHHHHhhhc--cCCCcHHHHHh
Confidence 1111 2788999999999999999 99999998863
No 34
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=99.59 E-value=2.7e-15 Score=153.11 Aligned_cols=178 Identities=19% Similarity=0.105 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+...+.|++||+.+|++||++-- +...+.++.+.++|||+|.| |-|.|..++... ...+|.|...++.++.++..
T Consensus 134 ~~~~~~ik~ik~~~~~~~viaGN---V~T~e~a~~L~~aGad~vkV-GiGpGsiCtTr~-v~GvG~PQ~tAv~~~a~~a~ 208 (352)
T PF00478_consen 134 EHVIDMIKKIKKKFPDVPVIAGN---VVTYEGAKDLIDAGADAVKV-GIGPGSICTTRE-VTGVGVPQLTAVYECAEAAR 208 (352)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEE---E-SHHHHHHHHHTT-SEEEE-SSSSSTTBHHHH-HHSBSCTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCceEEecc---cCCHHHHHHHHHcCCCEEEE-eccCCccccccc-ccccCCcHHHHHHHHHHHhh
Confidence 34567899999999989998873 34667788899999999999 887777666543 44679999999999999987
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccC---CCCcccccccCHH-----HHhhc-
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHL---NTCPVGIATQDPE-----LRKKF- 380 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~---~~cP~giat~~~~-----l~~~~- 380 (447)
++ .+|||+||||+++.||+|||++|||+|++|+.|--+-++.+--.-.. ..+..|.+....- ...+|
T Consensus 209 ~~----~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~ 284 (352)
T PF00478_consen 209 DY----GVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYF 284 (352)
T ss_dssp CT----TSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCT
T ss_pred hc----cCceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhcc
Confidence 65 49999999999999999999999999999998754443332111100 1122233322110 01122
Q ss_pred --------CCcH-------HHHHHHHHHHHHHHHHHHhhhCCCCCCccccccc
Q psy10999 381 --------AGKP-------EHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGD 418 (447)
Q Consensus 381 --------~~g~-------~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~ 418 (447)
.+|- -.|.+++..|...||..|.- +|+.++.+++..
T Consensus 285 ~~~~~~~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y--~Ga~~i~el~~~ 335 (352)
T PF00478_consen 285 QAEDKKFVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGY--VGARSIKELRKK 335 (352)
T ss_dssp SSTSSTSSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHH--TTSSBHHHHHHH
T ss_pred ccccccccccceeecCCCCCCHHHHHHHHHHHHHHHHHh--cCcccHHHHHhC
Confidence 1221 24788999999999999999 999999998744
No 35
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=99.59 E-value=9.9e-15 Score=150.26 Aligned_cols=160 Identities=19% Similarity=0.198 Sum_probs=112.1
Q ss_pred HHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHH----HHhc
Q psy10999 236 IYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV----LALN 311 (447)
Q Consensus 236 I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~----l~~~ 311 (447)
|.++++.. ++||+++. +....+|..+.++|||+|.+ |+ ||++.+.. ...++.|+..+++++..+ +.+.
T Consensus 180 l~~~i~~~-~IPVI~G~---V~t~e~A~~~~~aGaDgV~~-G~-gg~~~~~~--~lg~~~p~~~ai~d~~~a~~~~~~e~ 251 (369)
T TIGR01304 180 LKEFIGEL-DVPVIAGG---VNDYTTALHLMRTGAAGVIV-GP-GGANTTRL--VLGIEVPMATAIADVAAARRDYLDET 251 (369)
T ss_pred HHHHHHHC-CCCEEEeC---CCCHHHHHHHHHcCCCEEEE-CC-CCCccccc--ccCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34444443 67998752 23567888888999999983 33 33443322 234689999999888764 3334
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHH---------------
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPEL--------------- 376 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l--------------- 376 (447)
|.| .+|||+||||+++.||+||++||||+|++||+|+.+.+|.+ ..|.+|.++.+|+|
T Consensus 252 g~r-~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg------~~~~w~~~~~~~~~~~~~~~~~~~~~~~~ 324 (369)
T TIGR01304 252 GGR-YVHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPG------RGYFWPAAAAHPRLPRGVVTESGTVGEAP 324 (369)
T ss_pred CCC-CceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCC------CCCccchhhcCccCCccccccccccCCCC
Confidence 433 59999999999999999999999999999999999998765 34556655555443
Q ss_pred --HhhcC---CcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccc
Q psy10999 377 --RKKFA---GKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWL 416 (447)
Q Consensus 377 --~~~~~---~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~ 416 (447)
..-+. ..++|..|++ --||+.|+- +|.+++.+..
T Consensus 325 ~~~~~~~gp~~~~~~~~n~~----g~~~~~~~~--~g~~~~~~~~ 363 (369)
T TIGR01304 325 TLEEILHGPSTLPDGVENFE----GGLKRAMAK--CGYTDLKEFQ 363 (369)
T ss_pred cHHHHeeCCCCCCcchhhhH----HHHHHHHHH--cCchhhhhhh
Confidence 33332 1335555555 457889999 9998877664
No 36
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.57 E-value=2.5e-14 Score=151.91 Aligned_cols=166 Identities=16% Similarity=0.076 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+...+.|+++|+.+|++||++- .+.....++.+.++|||+|.|.+. +|+.+... ....+|.|+..++.++.+++.
T Consensus 251 ~~~~~~i~~i~~~~~~~~vi~g---~~~t~~~~~~l~~~G~d~i~vg~g-~Gs~~ttr-~~~~~g~~~~~a~~~~~~~~~ 325 (475)
T TIGR01303 251 VKMISAIKAVRALDLGVPIVAG---NVVSAEGVRDLLEAGANIIKVGVG-PGAMCTTR-MMTGVGRPQFSAVLECAAEAR 325 (475)
T ss_pred HHHHHHHHHHHHHCCCCeEEEe---ccCCHHHHHHHHHhCCCEEEECCc-CCccccCc-cccCCCCchHHHHHHHHHHHH
Confidence 5677899999999999999874 123456788899999999999655 56666443 356789999999999998887
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccc-cCHHH------------
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIAT-QDPEL------------ 376 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat-~~~~l------------ 376 (447)
+. .+|||+||||+++.||+|||++||++|++|+.|.-+ .++|-.+.. ++++.
T Consensus 326 ~~----~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~-----------~espg~~~~~~~g~~~k~yrGmgs~~a 390 (475)
T TIGR01303 326 KL----GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGT-----------YESPGDLMRDRDGRPYKESFGMASKRA 390 (475)
T ss_pred Hc----CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhccc-----------ccCCCceEEeECCEEEEEEecccCHHH
Confidence 65 489999999999999999999999999999987533 345555543 22111
Q ss_pred ---------------HhhcCCcHHH-----------HHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 377 ---------------RKKFAGKPEH-----------VINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 377 ---------------~~~~~~g~~~-----------V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
.+.+.+|.++ |.+++..+...||..|.- +|++++.+++.
T Consensus 391 ~~~~~~~~ry~~~~~~~~v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y--~g~~~i~~~~~ 455 (475)
T TIGR01303 391 VVARTGADNAFDRARKALFEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTY--AGASSLEEFHE 455 (475)
T ss_pred HhhccccchhhhhhccccccCceecccccccCCCCCHHHHHHHHHHHHHHHhhh--cCCCcHHHHHh
Confidence 1122344443 778999999999999999 99999998863
No 37
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.56 E-value=2e-14 Score=153.79 Aligned_cols=175 Identities=15% Similarity=0.078 Sum_probs=119.8
Q ss_pred HHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 233 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 233 ~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
++.|++||+.||+.+|+++-| ....+|+.+.++|||+|.|++|.|..+.++. .-..|.|...++..+.+.+.+
T Consensus 277 ~~~i~~ik~~~p~~~vi~g~v---~t~e~a~~a~~aGaD~i~vg~g~G~~~~t~~--~~~~g~~~~~~i~~~~~~~~~-- 349 (505)
T PLN02274 277 LEMIKYIKKTYPELDVIGGNV---VTMYQAQNLIQAGVDGLRVGMGSGSICTTQE--VCAVGRGQATAVYKVASIAAQ-- 349 (505)
T ss_pred HHHHHHHHHhCCCCcEEEecC---CCHHHHHHHHHcCcCEEEECCCCCccccCcc--ccccCCCcccHHHHHHHHHHh--
Confidence 378999999999989988833 4667899999999999999877554333321 112355555555555554432
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCC---CCcccccccCH------------HHH
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLN---TCPVGIATQDP------------ELR 377 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~---~cP~giat~~~------------~l~ 377 (447)
.++|||+||||+++.|++|||++||++|++|+.|..+.+|.+...-+.+ +.-.|+..... .-+
T Consensus 350 --~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~ 427 (505)
T PLN02274 350 --HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAK 427 (505)
T ss_pred --cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcc
Confidence 2599999999999999999999999999999999876655442111111 11222221000 000
Q ss_pred hhcCCcHH-------HHHHHHHHHHHHHHHHHhhhCCCCCCccccccc
Q psy10999 378 KKFAGKPE-------HVINYLFMLAEEVSRDYRAESPGFDFPLVWLGD 418 (447)
Q Consensus 378 ~~~~~g~~-------~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~ 418 (447)
+.+.+|-+ .|.+++..|...||..|.- +|+.++.+++..
T Consensus 428 ~~v~egv~~~v~~~g~~~~~~~~~~~g~~~~~~y--~g~~~~~~~~~~ 473 (505)
T PLN02274 428 LKIAQGVSGAVADKGSVLKFVPYTMQAVKQGFQD--LGASSLQSAHEL 473 (505)
T ss_pred cccCCceEEecccCCCHHHHHHHHHHHHHHhhhh--cCcchHHHHHhh
Confidence 11122222 2788999999999999999 999999998754
No 38
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=99.54 E-value=3.1e-14 Score=145.28 Aligned_cols=107 Identities=21% Similarity=0.220 Sum_probs=87.9
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.|+.++.. +.++..++ .....|+++.++|+|+|++.|.++|+|... .+....++.+++++++.+.
T Consensus 118 ~~i~~~~~~--g~~v~~~v----~~~~~A~~~~~~G~d~vI~~g~eAGGH~g~----~~~~~~t~~Lv~ev~~~~~---- 183 (336)
T COG2070 118 EFVARLKAA--GIKVIHSV----ITVREALKAERAGADAVIAQGAEAGGHRGG----VDLEVSTFALVPEVVDAVD---- 183 (336)
T ss_pred HHHHHHHHc--CCeEEEEe----CCHHHHHHHHhCCCCEEEecCCcCCCcCCC----CCCCccHHHHHHHHHHHhc----
Confidence 456677664 44555553 456789999999999999999999988664 2334568888999999862
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccc
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTM 356 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~ 356 (447)
.||||++|||.++++++.|++|||++|+|||+|+.+.+|.-
T Consensus 184 --~iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a 224 (336)
T COG2070 184 --GIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADA 224 (336)
T ss_pred --CCCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCC
Confidence 29999999999999999999999999999999999988875
No 39
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.52 E-value=8.4e-14 Score=140.65 Aligned_cols=106 Identities=15% Similarity=0.098 Sum_probs=83.6
Q ss_pred HHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC---
Q psy10999 236 IYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN--- 312 (447)
Q Consensus 236 I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g--- 312 (447)
+++|++. + +|++..+.....|+.+.++|+|+|+++|+++|+|..+ .++...++++.+.+....
T Consensus 96 ~~~lk~~--G----i~v~~~v~s~~~A~~a~~~GaD~vVaqG~EAGGH~G~--------~~t~~L~~~v~~~l~~~~~~~ 161 (320)
T cd04743 96 ARALEAI--G----ISTYLHVPSPGLLKQFLENGARKFIFEGRECGGHVGP--------RSSFVLWESAIDALLAANGPD 161 (320)
T ss_pred HHHHHHC--C----CEEEEEeCCHHHHHHHHHcCCCEEEEecCcCcCCCCC--------CCchhhHHHHHHHHHHhhccc
Confidence 5677764 4 4444445667788999999999999999999987542 345567788777764321
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCC--------CeeccChHHHHHhccc
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGA--------DEIGLSTAPLITMGCT 355 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGA--------d~V~iGt~~L~algc~ 355 (447)
...+||||++|||.++++++.+++||| ++|+|||+||.+-+|.
T Consensus 162 ~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es~ 212 (320)
T cd04743 162 KAGKIHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEAV 212 (320)
T ss_pred ccCCccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhhc
Confidence 012699999999999999999999999 8999999999999986
No 40
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=99.51 E-value=9.8e-14 Score=140.06 Aligned_cols=194 Identities=22% Similarity=0.267 Sum_probs=128.9
Q ss_pred cccccceeecCCCcccCcHHHHHHHHHHHHHhCCceeecCCCCChhhhhccCCCCCCCeEEeCCCCccccccccceeecc
Q psy10999 75 AEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQGKLYPKTYCFLSSLFTDL 154 (447)
Q Consensus 75 ~~i~~Pf~iaaMs~G~ls~ea~~aLA~AA~~~G~~~~sGeg~~~~e~~~~~~~~~~~~~i~Q~~ly~~~~~~~~lv~t~d 154 (447)
..+.+|++.+||++ .-+++ |+.|+.++|..-..|.+..++|.+... -..+++
T Consensus 8 lgi~~Pii~apM~~-~s~~~----la~avs~aGglG~l~~~~~~~~~l~~~-----i~~~~~------------------ 59 (307)
T TIGR03151 8 LGIEYPIFQGGMAW-VATGS----LAAAVSNAGGLGIIGAGNAPPDVVRKE-----IRKVKE------------------ 59 (307)
T ss_pred hCCCCCEEcCCCCC-CCCHH----HHHHHHhCCCcceeccccCCHHHHHHH-----HHHHHH------------------
Confidence 46779999999986 33455 999999999987777677777765421 122334
Q ss_pred ccccccccccCCCCCChHhhccccccccccccccCCCCCCCCCCCcccHHHHhhcCCCCcccccCCCCCCCCCCHHHHHH
Q psy10999 155 FPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAE 234 (447)
Q Consensus 155 ~p~~~~rv~s~rfGv~~~~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~~~~g~~lisp~~~~~~~s~edl~~ 234 (447)
..+..||++.-... |- ..+.+..+. ..++..++-. +-.+. +
T Consensus 60 -------~t~~pfgvn~~~~~--------------~~---------~~~~~~~~~--~~~v~~v~~~----~g~p~---~ 100 (307)
T TIGR03151 60 -------LTDKPFGVNIMLLS--------------PF---------VDELVDLVI--EEKVPVVTTG----AGNPG---K 100 (307)
T ss_pred -------hcCCCcEEeeecCC--------------CC---------HHHHHHHHH--hCCCCEEEEc----CCCcH---H
Confidence 23344555531110 10 001111111 1112222211 01112 3
Q ss_pred HHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCC
Q psy10999 235 LIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLR 314 (447)
Q Consensus 235 ~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr 314 (447)
.++++|+. + +|+++.++....+..+.++|+|+|+++|++.|++.. ..++...|+++.+.+
T Consensus 101 ~i~~lk~~--g----~~v~~~v~s~~~a~~a~~~GaD~Ivv~g~eagGh~g--------~~~~~~ll~~v~~~~------ 160 (307)
T TIGR03151 101 YIPRLKEN--G----VKVIPVVASVALAKRMEKAGADAVIAEGMESGGHIG--------ELTTMALVPQVVDAV------ 160 (307)
T ss_pred HHHHHHHc--C----CEEEEEcCCHHHHHHHHHcCCCEEEEECcccCCCCC--------CCcHHHHHHHHHHHh------
Confidence 57888875 4 344445566678899999999999999998776532 125778888888764
Q ss_pred CceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccc
Q psy10999 315 SRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTM 356 (447)
Q Consensus 315 ~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~ 356 (447)
++|||++|||.++.|+++|+++|||+|++||.|+.+.+|..
T Consensus 161 -~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~Es~~ 201 (307)
T TIGR03151 161 -SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKECNV 201 (307)
T ss_pred -CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccccCC
Confidence 59999999999999999999999999999999999998854
No 41
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.45 E-value=9.4e-13 Score=134.24 Aligned_cols=174 Identities=17% Similarity=0.159 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeec-cHHHHHHHHHHCCCcEEEEecCCCCCCCccc---cccccCCCChHHHHHHHHH
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGTGASSW---TGIKNAGLPWELGVAETHQ 306 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~-Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~---~~~~~~G~p~~~~L~ev~~ 306 (447)
.+.+.++++|+.. ++||+||+.... .+...++.+.++|+|+|++.|..-+.. ... .....+|++....++.+.+
T Consensus 152 ~~~eil~~v~~~~-~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~-~d~~~~~~~~~~glsg~~~~~~al~ 229 (334)
T PRK07565 152 RYLDILRAVKSAV-SIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNRFYQPD-IDLETLEVVPGLVLSTPAELRLPLR 229 (334)
T ss_pred HHHHHHHHHHhcc-CCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECCcCCCC-cChhhcccccCCCCCCchhhhHHHH
Confidence 3678889999875 689999977532 234567778899999999987632211 111 1112455554443333332
Q ss_pred HHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHH
Q psy10999 307 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEH 386 (447)
Q Consensus 307 ~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~ 386 (447)
.+...--..++|||+.|||+|+.|+++++.+|||+|++||+++.- ++
T Consensus 230 ~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~-------------------------------g~-- 276 (334)
T PRK07565 230 WIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRH-------------------------------GP-- 276 (334)
T ss_pred HHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhh-------------------------------Cc--
Confidence 111110112699999999999999999999999999999999851 22
Q ss_pred HHHHHHHHHHHHHHHHhhhCCCCCCccccccccccccccccccc-ccccccccccCCC
Q psy10999 387 VINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFKQEGDQLSLVW-GTLTMKVTSRKLP 443 (447)
Q Consensus 387 V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 443 (447)
.++..+.+||+..|.. .|++++.++.+.+..........+ ++.||++-+++++
T Consensus 277 --~~~~~i~~~L~~~l~~--~g~~~i~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (334)
T PRK07565 277 --DYIGTILRGLEDWMER--HGYESLQQFRGSMSQKNVPDPAAFERAQYMKALSSYSP 330 (334)
T ss_pred --HHHHHHHHHHHHHHHH--cCCCCHHHHhcccccccCCChhhhHHHHHHHHHHhcCc
Confidence 4688899999999999 999999999886654422221122 6677877666655
No 42
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.44 E-value=9.3e-13 Score=140.15 Aligned_cols=177 Identities=17% Similarity=0.129 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
....+.|++||+.+|+++|+.- .+.....|+.+.++|||+|.| |-|.|+-++.... -..|.|...++.++.++..
T Consensus 253 ~~~~~~i~~ik~~~p~~~v~ag---nv~t~~~a~~l~~aGad~v~v-gig~gsictt~~~-~~~~~p~~~av~~~~~~~~ 327 (479)
T PRK07807 253 EKMLEALRAVRALDPGVPIVAG---NVVTAEGTRDLVEAGADIVKV-GVGPGAMCTTRMM-TGVGRPQFSAVLECAAAAR 327 (479)
T ss_pred HHHHHHHHHHHHHCCCCeEEee---ccCCHHHHHHHHHcCCCEEEE-CccCCcccccccc-cCCchhHHHHHHHHHHHHH
Confidence 4456899999999999888775 344667888899999999988 6766655544332 3468899999999999875
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhc----ccCCCCccccccc---------CHHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRK----CHLNTCPVGIATQ---------DPEL 376 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~----c~~~~cP~giat~---------~~~l 376 (447)
+. .+|||++|||+++.|++|||++||++|++|+.|+-+.++.+--. -...+.-.|+... +..+
T Consensus 328 ~~----~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg~~~~~~~g~~~k~yrgmgs~~a~~~~~~~~~~~ 403 (479)
T PRK07807 328 EL----GAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPGDLMRDRDGRPYKESFGMASARAVAARTAGDSAF 403 (479)
T ss_pred hc----CCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCCceEeccCCeEEEEeeccccHHHHhcccCccchh
Confidence 44 48999999999999999999999999999999876554433100 0000000011100 0000
Q ss_pred ----HhhcCCcHHH-----------HHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 377 ----RKKFAGKPEH-----------VINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 377 ----~~~~~~g~~~-----------V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
.+++.+|-++ +..++..|...||..|.- +|+.++.+++.
T Consensus 404 ~~~~~~~~~eGv~~~~~~~~~~~g~~~~~~~~l~~glr~~~~y--~g~~~i~~~~~ 457 (479)
T PRK07807 404 DRARKALFEEGISTSRMYLDPGRPGVEDLLDHITSGVRSSCTY--AGARTLAEFHE 457 (479)
T ss_pred hhcccCCCCCCccceeeeccCCCCCHHHHHHHHHHHHHHHHhh--cCcCcHHHHHh
Confidence 1112223222 788999999999999999 99999988863
No 43
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=99.39 E-value=2e-12 Score=134.83 Aligned_cols=90 Identities=20% Similarity=0.147 Sum_probs=70.2
Q ss_pred HHHHHHHHHHCC-CcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH----hcCCCCceEEEEcCCCCChHHHH
Q psy10999 258 VGVVASGVAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA----LNNLRSRVVLQADGQIRTGFDVV 332 (447)
Q Consensus 258 i~~~A~~a~~aG-aD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~----~~glr~~v~viadGGIrtg~Dv~ 332 (447)
....|+.+.+.| +|.|+++ .+.|+|.. ..|+...|+.+.+... +++...+|||+++|||.||++++
T Consensus 165 t~~eA~~A~~~g~aD~Ivvq-~EAGGH~g--------~~~~~~Llp~v~~l~d~v~~~~~~~~~ipViAAGGI~tg~~va 235 (418)
T cd04742 165 TEEQAELARRVPVADDITVE-ADSGGHTD--------NRPLSVLLPTIIRLRDELAARYGYRRPIRVGAAGGIGTPEAAA 235 (418)
T ss_pred CHHHHHHHHhCCCCCEEEEc-ccCCCCCC--------CccHHhHHHHHHHHHHHHhhccccCCCceEEEECCCCCHHHHH
Confidence 345788889999 5999998 77777742 1355566666655332 23334479999999999999999
Q ss_pred HHHHcCCCeeccChHHHHHhcccc
Q psy10999 333 VAALLGADEIGLSTAPLITMGCTM 356 (447)
Q Consensus 333 kAlaLGAd~V~iGt~~L~algc~~ 356 (447)
.|++||||+|++||.|+.+.+|.-
T Consensus 236 AA~alGAd~V~~GT~flat~Ea~~ 259 (418)
T cd04742 236 AAFALGADFIVTGSINQCTVEAGT 259 (418)
T ss_pred HHHHcCCcEEeeccHHHhCccccC
Confidence 999999999999999999988865
No 44
>PLN02826 dihydroorotate dehydrogenase
Probab=99.34 E-value=3.1e-11 Score=126.18 Aligned_cols=156 Identities=18% Similarity=0.191 Sum_probs=109.8
Q ss_pred CCCC--CCCCCCHHHHHHHHHHHHHh--------CCCCceEEEEeeec---cHHHHHHHHHHCCCcEEEEecCCCCC-C-
Q psy10999 219 SPPP--HHDIYSIEDLAELIYDLKCA--------NPNARISVKLVSEV---GVGVVASGVAKGKAEHIVISGHDGGT-G- 283 (447)
Q Consensus 219 sp~~--~~~~~s~edl~~~I~~Lr~~--------~p~~pI~VKlv~~~---Gi~~~A~~a~~aGaD~I~VsG~~GGt-g- 283 (447)
+|+. .++....+.+.+++..+++. ...+||.||+.+.. .+...|..+.++|+|+|+++|.-=+. .
T Consensus 226 cPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~d 305 (409)
T PLN02826 226 SPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDS 305 (409)
T ss_pred CCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccc
Confidence 5543 34455667777888887743 13579999987643 35556788899999999999842100 0
Q ss_pred --Cccccccc---cCCCC----hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcc
Q psy10999 284 --ASSWTGIK---NAGLP----WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354 (447)
Q Consensus 284 --~a~~~~~~---~~G~p----~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc 354 (447)
..+. ... -.|.| ....+.++++.+ ..++|||.+|||.|+.|+++.+.+||+.|+++|++++-
T Consensus 306 l~~~~~-~~~~GGlSG~pl~~~sl~~v~~l~~~~-----~~~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~~--- 376 (409)
T PLN02826 306 VLGHPH-ADEAGGLSGKPLFDLSTEVLREMYRLT-----RGKIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAYE--- 376 (409)
T ss_pred hhcccc-cccCCCcCCccccHHHHHHHHHHHHHh-----CCCCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHhc---
Confidence 0000 000 12333 344555555553 34699999999999999999999999999999998861
Q ss_pred cchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 355 TMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 355 ~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
|+ .++..+.+||.+.|.. .|++++.++.+
T Consensus 377 ----------------------------Gp----~~i~~I~~eL~~~l~~--~G~~si~e~iG 405 (409)
T PLN02826 377 ----------------------------GP----ALIPRIKAELAACLER--DGFKSIQEAVG 405 (409)
T ss_pred ----------------------------CH----HHHHHHHHHHHHHHHH--cCCCCHHHHhC
Confidence 23 3677888999999999 99999988765
No 45
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=99.31 E-value=2.2e-11 Score=123.97 Aligned_cols=149 Identities=20% Similarity=0.193 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeec-cHHHHHHHHHHCCCcEEEEecCCCCCCCccc---cccccCCCChH----HHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGTGASSW---TGIKNAGLPWE----LGV 301 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~-Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~---~~~~~~G~p~~----~~L 301 (447)
+.+.+.++++|+.. ++||+||+.... .+...++.+.++|+|+|++.|...+.. ... .....+|++.. .+|
T Consensus 149 ~~~~eiv~~v~~~~-~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt~~~~~-id~~~~~~~~~~glSG~~~~~~al 226 (325)
T cd04739 149 QRYLDILRAVKSAV-TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNRFYQPD-IDLETLEVVPNLLLSSPAEIRLPL 226 (325)
T ss_pred HHHHHHHHHHHhcc-CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcCcCCCC-ccccccceecCCCcCCccchhHHH
Confidence 34678899999876 689999987632 345677788999999999998742211 110 00112232211 222
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcC
Q psy10999 302 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA 381 (447)
Q Consensus 302 ~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~ 381 (447)
.-+.+. .. ..++|||+.|||+|+.|+.+.+.+|||+|++||+++.-
T Consensus 227 ~~v~~v-~~---~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~------------------------------ 272 (325)
T cd04739 227 RWIAIL-SG---RVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRH------------------------------ 272 (325)
T ss_pred HHHHHH-Hc---ccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhc------------------------------
Confidence 222222 11 12699999999999999999999999999999998851
Q ss_pred CcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccccccc
Q psy10999 382 GKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFKQ 421 (447)
Q Consensus 382 ~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~~ 421 (447)
|+ .++..+.+||.+.|.. -|++++.++.+.+..
T Consensus 273 -gp----~~~~~i~~~L~~~l~~--~g~~~i~e~~G~~~~ 305 (325)
T cd04739 273 -GP----DYIGTLLAGLEAWMEE--HGYESVQQLRGSMSQ 305 (325)
T ss_pred -Cc----hHHHHHHHHHHHHHHH--cCCCCHHHHhccccc
Confidence 22 2677889999999999 999999999885443
No 46
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=99.29 E-value=3.7e-11 Score=126.13 Aligned_cols=89 Identities=21% Similarity=0.173 Sum_probs=69.3
Q ss_pred HHHHHHHHHCC-CcEEEEecCCCCCCCccccccccCCCChHHHHHHHHH---HH-HhcCCCCceEEEEcCCCCChHHHHH
Q psy10999 259 GVVASGVAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ---VL-ALNNLRSRVVLQADGQIRTGFDVVV 333 (447)
Q Consensus 259 ~~~A~~a~~aG-aD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~---~l-~~~glr~~v~viadGGIrtg~Dv~k 333 (447)
...|+.+.+.| +|.|++. .++|+|.. ..|+...|+++.+ .+ ..++....|||+++|||.||.+++.
T Consensus 171 ~eEA~~a~~~g~aD~Ivve-~EAGGHtg--------~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaA 241 (444)
T TIGR02814 171 REEAELARRVPVADDICVE-ADSGGHTD--------NRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAA 241 (444)
T ss_pred HHHHHHHHhCCCCcEEEEe-ccCCCCCC--------CCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHH
Confidence 45677888998 5999987 77777742 2356677777753 33 2223334699999999999999999
Q ss_pred HHHcCCCeeccChHHHHHhcccc
Q psy10999 334 AALLGADEIGLSTAPLITMGCTM 356 (447)
Q Consensus 334 AlaLGAd~V~iGt~~L~algc~~ 356 (447)
|++||||+|++||.|+.+.+|..
T Consensus 242 AlaLGAdgV~~GT~flat~Esga 264 (444)
T TIGR02814 242 AFMLGADFIVTGSVNQCTVEAGT 264 (444)
T ss_pred HHHcCCcEEEeccHHHhCccccC
Confidence 99999999999999999988765
No 47
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=99.24 E-value=9.2e-11 Score=117.60 Aligned_cols=148 Identities=16% Similarity=0.152 Sum_probs=102.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeec-cHHHHHHHHHHCCCcEEEEecCCCCCCC-----cccccccc---CCCC-
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGTGA-----SSWTGIKN---AGLP- 296 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~-Gi~~~A~~a~~aGaD~I~VsG~~GGtg~-----a~~~~~~~---~G~p- 296 (447)
.+++.+.+.++++|+.. +.||.||+-... .....++.+.++|+|+|+|+|.-.+... .+...... .|.+
T Consensus 140 ~~~~~~~eiv~~vr~~~-~~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~ 218 (300)
T TIGR01037 140 QDPELSADVVKAVKDKT-DVPVFAKLSPNVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAI 218 (300)
T ss_pred cCHHHHHHHHHHHHHhc-CCCEEEECCCChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhh
Confidence 35677789999999886 689999976422 2234567788999999999875322100 00000000 1111
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHH
Q psy10999 297 WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPEL 376 (447)
Q Consensus 297 ~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l 376 (447)
+...+..+.+..+. + ++|||+.|||.|+.|+.+++..|||+|++||+++.
T Consensus 219 ~~~~l~~v~~i~~~--~--~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~-------------------------- 268 (300)
T TIGR01037 219 KPIALRMVYDVYKM--V--DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYY-------------------------- 268 (300)
T ss_pred hHHHHHHHHHHHhc--C--CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhc--------------------------
Confidence 11123333332211 1 49999999999999999999999999999999874
Q ss_pred HhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 377 RKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 377 ~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
+. .++..+.+||++.|.. .|++++.++.+
T Consensus 269 --------~p--~~~~~i~~~l~~~~~~--~g~~~~~e~~g 297 (300)
T TIGR01037 269 --------RG--FAFKKIIEGLIAFLKA--EGFTSIEELIG 297 (300)
T ss_pred --------Cc--hHHHHHHHHHHHHHHH--cCCCCHHHHhC
Confidence 11 4688899999999999 99999888754
No 48
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=99.17 E-value=5.9e-10 Score=111.49 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=103.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeec-cHHHHHHHHHHCCCcEEEEecCCCCCCCc-----ccccc---ccCCCC-
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGTGAS-----SWTGI---KNAGLP- 296 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~-Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a-----~~~~~---~~~G~p- 296 (447)
.+++.+.+.++++|+.. +.||.||+-... .....++.+.++|+|+|++.|.-.|.... |.... -..|.+
T Consensus 137 ~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~ 215 (296)
T cd04740 137 TDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAI 215 (296)
T ss_pred CCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCccc
Confidence 45667788999999886 689999975432 13345777889999999998764432110 00000 001211
Q ss_pred ---hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccC
Q psy10999 297 ---WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQD 373 (447)
Q Consensus 297 ---~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~ 373 (447)
....+.++.+.+ ++|||+.|||.++.|+.+++..|||.|++||+++..
T Consensus 216 ~~~~~~~i~~i~~~~-------~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~---------------------- 266 (296)
T cd04740 216 KPIALRMVYQVYKAV-------EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVD---------------------- 266 (296)
T ss_pred chHHHHHHHHHHHhc-------CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcC----------------------
Confidence 123344444332 599999999999999999999999999999998751
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 374 PELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 374 ~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
+ .++..+.+++.+.|.. .|++++.++.+
T Consensus 267 ----------p----~~~~~i~~~l~~~~~~--~g~~~~~~~~g 294 (296)
T cd04740 267 ----------P----EAFKEIIEGLEAYLDE--EGIKSIEELVG 294 (296)
T ss_pred ----------h----HHHHHHHHHHHHHHHH--cCCCCHHHHhC
Confidence 2 3577888999999999 99999888764
No 49
>KOG2550|consensus
Probab=99.10 E-value=1.8e-10 Score=117.80 Aligned_cols=167 Identities=21% Similarity=0.144 Sum_probs=124.0
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 307 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~ 307 (447)
|+-.+ ++|+++|+.+|...|+---| -....|+-+.++|||++.| |.|-|+-+...+.+ .+|.|...++.++.+.
T Consensus 276 S~~qi-emik~iK~~yP~l~ViaGNV---VT~~qa~nLI~aGaDgLrV-GMGsGSiCiTqevm-a~GrpQ~TAVy~va~~ 349 (503)
T KOG2550|consen 276 SIYQL-EMIKYIKETYPDLQIIAGNV---VTKEQAANLIAAGADGLRV-GMGSGSICITQKVM-ACGRPQGTAVYKVAEF 349 (503)
T ss_pred chhHH-HHHHHHHhhCCCceeeccce---eeHHHHHHHHHccCceeEe-ccccCceeeeceee-eccCCcccchhhHHHH
Confidence 44444 78999999999977754411 2346677899999999999 66666555544332 4789999999999887
Q ss_pred HHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCC-----
Q psy10999 308 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG----- 382 (447)
Q Consensus 308 l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~----- 382 (447)
.... .+|+|+||||++..+|+|||+|||+.|+||.-+.. +-++|-+....|...-++|.+
T Consensus 350 A~q~----gvpviADGGiq~~Ghi~KAl~lGAstVMmG~lLAg-----------tTEapGeyf~~~g~rlKkyrGMGSl~ 414 (503)
T KOG2550|consen 350 ANQF----GVPCIADGGIQNVGHVVKALGLGASTVMMGGLLAG-----------TTEAPGEYFFRDGVRLKKYRGMGSLD 414 (503)
T ss_pred HHhc----CCceeecCCcCccchhHhhhhcCchhheecceeee-----------eeccCcceeeecCeeehhccCcchHH
Confidence 6544 49999999999999999999999999999975432 235666666665433333211
Q ss_pred ---------------------c-------HHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 383 ---------------------K-------PEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 383 ---------------------g-------~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
| .-.|.+|+..+...++..+.- +|++|+.+++.
T Consensus 415 AM~~~s~~rY~~e~dkvkiAQGVsg~v~dKGsv~kfipyl~~giqh~cqd--iGa~sL~~l~~ 475 (503)
T KOG2550|consen 415 AMESSSQKRYFSEVDKVKIAQGVSGSVQDKGSVQKFIPYLLAGIQHSCQD--IGARSLKELRE 475 (503)
T ss_pred HHhhhhhhccccccceEeeccCcEEEeccCcchhhhHHHHHHHHhhhhhh--hhHHHHHHHHH
Confidence 0 123788999999999999999 99999888764
No 50
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=99.10 E-value=1.8e-09 Score=108.46 Aligned_cols=145 Identities=18% Similarity=0.138 Sum_probs=102.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeec-cHHHHHHHHHHCCCcEEEEecCCCCCCCcccc-----ccc---cCCC--
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGTGASSWT-----GIK---NAGL-- 295 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~-Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~-----~~~---~~G~-- 295 (447)
.+++-+.+.|+++|+.. +.||.||+.... .+...++.+.++|+|+|++.|.-.+....... ... ..|.
T Consensus 140 ~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~ 218 (301)
T PRK07259 140 TDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAI 218 (301)
T ss_pred cCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCc
Confidence 35677789999999986 789999987532 23345777889999999987643221100000 000 0111
Q ss_pred -C-hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccC
Q psy10999 296 -P-WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQD 373 (447)
Q Consensus 296 -p-~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~ 373 (447)
| ....+.++.+.+ ++|||+.|||.|+.|+.++++.|||.|++||+++..
T Consensus 219 ~p~~l~~v~~i~~~~-------~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~---------------------- 269 (301)
T PRK07259 219 KPIALRMVYQVYQAV-------DIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYD---------------------- 269 (301)
T ss_pred ccccHHHHHHHHHhC-------CCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcC----------------------
Confidence 1 223344444432 599999999999999999999999999999998751
Q ss_pred HHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 374 PELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 374 ~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
+ .++..+.++++..|.. -|++++.++.+
T Consensus 270 ----------P----~~~~~i~~~l~~~~~~--~g~~~i~~~~g 297 (301)
T PRK07259 270 ----------P----YAFPKIIEGLEAYLDK--YGIKSIEEIVG 297 (301)
T ss_pred ----------c----HHHHHHHHHHHHHHHH--cCCCCHHHHhC
Confidence 2 3577788999999999 99999888765
No 51
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=99.08 E-value=6.3e-10 Score=112.16 Aligned_cols=157 Identities=19% Similarity=0.241 Sum_probs=113.4
Q ss_pred CCCC-CHHHHHHHHHHHHHhCCCCceEEEEee-eccHHHHHHHHHHCCCcEEEEecCCC-CCCC-----ccccccccCCC
Q psy10999 224 HDIY-SIEDLAELIYDLKCANPNARISVKLVS-EVGVGVVASGVAKGKAEHIVISGHDG-GTGA-----SSWTGIKNAGL 295 (447)
Q Consensus 224 ~~~~-s~edl~~~I~~Lr~~~p~~pI~VKlv~-~~Gi~~~A~~a~~aGaD~I~VsG~~G-Gtg~-----a~~~~~~~~G~ 295 (447)
.++. +.+.+.++++++|+.. .+||.||+.+ ...+...|+.+.++|+|+|++.|.-. +... .|.......|+
T Consensus 140 ~~l~~~~e~l~~l~~~vk~~~-~~Pv~vKl~P~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGL 218 (310)
T COG0167 140 RALGQDPELLEKLLEAVKAAT-KVPVFVKLAPNITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGL 218 (310)
T ss_pred hhhccCHHHHHHHHHHHHhcc-cCceEEEeCCCHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCc
Confidence 3454 6778888999999986 5899999987 33455678889999999999988543 2200 01111112233
Q ss_pred ---C-hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccc
Q psy10999 296 ---P-WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIAT 371 (447)
Q Consensus 296 ---p-~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat 371 (447)
| ...++.-+++..+. ++.++|||..|||.|+.|++.-+.+||+.|+++|++++-
T Consensus 219 SG~~ikp~al~~v~~l~~~--~~~~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~-------------------- 276 (310)
T COG0167 219 SGPPLKPIALRVVAELYKR--LGGDIPIIGVGGIETGEDALEFILAGASAVQVGTALIYK-------------------- 276 (310)
T ss_pred CcccchHHHHHHHHHHHHh--cCCCCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeee--------------------
Confidence 3 22344444443332 345799999999999999999999999999999998751
Q ss_pred cCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccccccc
Q psy10999 372 QDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFK 420 (447)
Q Consensus 372 ~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~ 420 (447)
|+ .+++.+.++|.+.|.. -|++|+.++.+..+
T Consensus 277 -----------Gp----~i~~~I~~~l~~~l~~--~g~~si~d~iG~~~ 308 (310)
T COG0167 277 -----------GP----GIVKEIIKGLARWLEE--KGFESIQDIIGSAL 308 (310)
T ss_pred -----------Cc----hHHHHHHHHHHHHHHH--cCCCCHHHHhchhc
Confidence 22 2577888999999999 99999998876554
No 52
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=99.01 E-value=5.6e-09 Score=107.15 Aligned_cols=124 Identities=18% Similarity=0.202 Sum_probs=81.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC----CCceEEEEeeecc---HHHHHHHHHHCCCcEEEEecCCCCC-CCccccc-ccc---
Q psy10999 225 DIYSIEDLAELIYDLKCANP----NARISVKLVSEVG---VGVVASGVAKGKAEHIVISGHDGGT-GASSWTG-IKN--- 292 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p----~~pI~VKlv~~~G---i~~~A~~a~~aGaD~I~VsG~~GGt-g~a~~~~-~~~--- 292 (447)
.....+.+.+.++++|+..+ ++||.||+-.... +...|+.+.++|+|+|+++|.--.. +...... ...
T Consensus 187 ~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~ 266 (344)
T PRK05286 187 DLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGL 266 (344)
T ss_pred cccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCc
Confidence 34456778889999998765 3899999886433 4456778889999999999852100 0000000 001
Q ss_pred CCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 293 AGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 293 ~G~p~-~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
.|.+. ...+..+.+..+. ++.++|||+.|||.|+.|+.+.+..|||+|++||++++
T Consensus 267 SG~~~~~~~l~~v~~l~~~--~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~ 323 (344)
T PRK05286 267 SGRPLFERSTEVIRRLYKE--LGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY 323 (344)
T ss_pred ccHHHHHHHHHHHHHHHHH--hCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence 12221 1122222222111 34469999999999999999999999999999999875
No 53
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=98.99 E-value=3.3e-09 Score=106.69 Aligned_cols=118 Identities=18% Similarity=0.131 Sum_probs=84.2
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeec-cHHHHHHHHHHCCCcEEEEecCCCCC-CC-----ccc-------ccccc
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGT-GA-----SSW-------TGIKN 292 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~-Gi~~~A~~a~~aGaD~I~VsG~~GGt-g~-----a~~-------~~~~~ 292 (447)
.+++.+.+.++.+|+.. ++||.||+-... .+...++.+.++|+|+|++.|+-.+. +- .+. ...-.
T Consensus 151 ~~~~~~~~iv~~v~~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~~~~~~~~~~gg~ 229 (299)
T cd02940 151 QDPELVEEICRWVREAV-KIPVIAKLTPNITDIREIARAAKEGGADGVSAINTVNSLMGVDLDGTPPAPGVEGKTTYGGY 229 (299)
T ss_pred cCHHHHHHHHHHHHHhc-CCCeEEECCCCchhHHHHHHHHHHcCCCEEEEecccccccccccccCCccccccCCCCcCcc
Confidence 45677888999999876 679999987532 34467788899999999988764331 00 000 00111
Q ss_pred CCCCh----HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 293 AGLPW----ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 293 ~G~p~----~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
.|.+. ...+.++.+.+ ..++|||+.|||.|+.|+.+++..|||+|++||+++.
T Consensus 230 sG~a~~p~~l~~v~~~~~~~-----~~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 230 SGPAVKPIALRAVSQIARAP-----EPGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred cCCCcchHHHHHHHHHHHhc-----CCCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 23332 45555655553 2369999999999999999999999999999999875
No 54
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=98.91 E-value=1.3e-08 Score=105.88 Aligned_cols=165 Identities=16% Similarity=0.116 Sum_probs=110.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeec-cHHHHHHHHHHCCCcEEEEecCCC-CCCC-----cccccc----ccCCC
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDG-GTGA-----SSWTGI----KNAGL 295 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~-Gi~~~A~~a~~aGaD~I~VsG~~G-Gtg~-----a~~~~~----~~~G~ 295 (447)
.+++-+.+.++++|+.. .+||+||+-+.. .+...|+.+.++|+|+|++.|.-. +.+- .|.... ...|+
T Consensus 165 q~~e~~~~i~~~Vk~~~-~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~~~~~ID~~t~~p~~~~~~~~~~GGl 243 (385)
T PLN02495 165 QDCDLLEEVCGWINAKA-TVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIMSVMGINLDTLRPEPCVEGYSTPGGY 243 (385)
T ss_pred cCHHHHHHHHHHHHHhh-cCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccCcccccccccCccccccCCCCCCCCc
Confidence 35666778889998875 689999998743 355677888999999999887643 2111 110000 11222
Q ss_pred C---h-HHHHHH---HHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCccc
Q psy10999 296 P---W-ELGVAE---THQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVG 368 (447)
Q Consensus 296 p---~-~~~L~e---v~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~g 368 (447)
. . ..+|.. +.+.+... ...++|||..|||.|+.|+++.+.+||+.|+++|++++
T Consensus 244 SG~alkpiAl~~v~~i~~~~~~~-~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~------------------ 304 (385)
T PLN02495 244 SSKAVRPIALAKVMAIAKMMKSE-FPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMM------------------ 304 (385)
T ss_pred cchhhhHHHHHHHHHHHHHHhhh-ccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeee------------------
Confidence 2 1 123333 33433211 11259999999999999999999999999999999874
Q ss_pred ccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccccccc-cccccccccc
Q psy10999 369 IATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGDFK-QEGDQLSLVW 430 (447)
Q Consensus 369 iat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~~~-~~~~~~~~~~ 430 (447)
.|+ .+++.+.+||.+.|.. -|++++.++.+.-+ ...+..+|+.
T Consensus 305 -------------~Gp----~vi~~i~~~L~~~m~~--~G~~si~e~~G~~~~~~~~~~~l~~ 348 (385)
T PLN02495 305 -------------HGY----PLVKNLCAELQDFMKK--HNFSSIEDFRGASLPYFTTHTDLVQ 348 (385)
T ss_pred -------------cCc----HHHHHHHHHHHHHHHH--cCCCCHHHHhCcCCcccCcHHHhhH
Confidence 122 2567788999999999 99999998874333 3334444443
No 55
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=98.90 E-value=2.4e-08 Score=101.16 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=100.9
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHH---HCCCcEEEEecCCC-CC-----CCcccc--cccc---C
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVA---KGKAEHIVISGHDG-GT-----GASSWT--GIKN---A 293 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~---~aGaD~I~VsG~~G-Gt-----g~a~~~--~~~~---~ 293 (447)
+++.+.+.++++|+.. .+||+||+.+.......++.+. +.|+|+|+.-+.-| +- +..+.. .... .
T Consensus 141 d~~~~~~i~~~v~~~~-~~Pv~vKlsp~~~~~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlS 219 (310)
T PRK02506 141 DFETTEQILEEVFTYF-TKPLGVKLPPYFDIVHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIG 219 (310)
T ss_pred CHHHHHHHHHHHHHhc-CCccEEecCCCCCHHHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCC
Confidence 4677888999999875 5799999988655554554433 55777765444211 00 000000 0001 1
Q ss_pred CCC-hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCccccccc
Q psy10999 294 GLP-WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQ 372 (447)
Q Consensus 294 G~p-~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~ 372 (447)
|.| ...+|.-+.+..+. +..++|||+.|||.|+.|+++.+.+||+.|+++|++++-
T Consensus 220 G~~i~p~al~~v~~~~~~--~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~~--------------------- 276 (310)
T PRK02506 220 GDYIKPTALANVRAFYQR--LNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGTALHKE--------------------- 276 (310)
T ss_pred chhccHHHHHHHHHHHHh--cCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHHh---------------------
Confidence 222 12334444443332 234699999999999999999999999999999998851
Q ss_pred CHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccccc
Q psy10999 373 DPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGD 418 (447)
Q Consensus 373 ~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~ 418 (447)
++ .++..+.+||++.|.. -|++++.++.+.
T Consensus 277 ----------gp----~~~~~i~~~L~~~l~~--~g~~si~e~~G~ 306 (310)
T PRK02506 277 ----------GP----AVFERLTKELKAIMAE--KGYQSLEDFRGK 306 (310)
T ss_pred ----------Ch----HHHHHHHHHHHHHHHH--hCCCCHHHHhCh
Confidence 12 3577889999999999 999999988773
No 56
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=98.89 E-value=9.8e-09 Score=104.62 Aligned_cols=123 Identities=18% Similarity=0.184 Sum_probs=80.7
Q ss_pred CCCHHHHHHHHHHHHHhCC----CCceEEEEeeecc---HHHHHHHHHHCCCcEEEEecCCCCCCCc--cccccc---cC
Q psy10999 226 IYSIEDLAELIYDLKCANP----NARISVKLVSEVG---VGVVASGVAKGKAEHIVISGHDGGTGAS--SWTGIK---NA 293 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p----~~pI~VKlv~~~G---i~~~A~~a~~aGaD~I~VsG~~GGtg~a--~~~~~~---~~ 293 (447)
....+.+.+.++.+|+... ++||.||+-.... +...++.+.++|+|+|++.|.--+.-.. +..... -.
T Consensus 179 ~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~s 258 (327)
T cd04738 179 LQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLS 258 (327)
T ss_pred ccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccC
Confidence 4566778889999998753 3899999876432 3446677889999999998742110000 000000 01
Q ss_pred CCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 294 GLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 294 G~p~-~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
|.+. ..++..+.+.-+. ++.++||++.|||+|+.|+.+.+..|||+|++||++++
T Consensus 259 G~~~~~~~l~~v~~l~~~--~~~~ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 259 GAPLKERSTEVLRELYKL--TGGKIPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred ChhhhHHHHHHHHHHHHH--hCCCCcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 2221 1223333332221 23469999999999999999999999999999999986
No 57
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=98.86 E-value=1.7e-08 Score=105.96 Aligned_cols=149 Identities=19% Similarity=0.108 Sum_probs=102.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeec-cHHHHHHHHHHCCCcEEEEecCCCC-CC-------Cccc-----ccccc
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGG-TG-------ASSW-----TGIKN 292 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~-Gi~~~A~~a~~aGaD~I~VsG~~GG-tg-------~a~~-----~~~~~ 292 (447)
.+++.+.+.++.+|+.. .+||.||+-... .+...|+.+.++|||+|++.|.-.+ .. ..|. ...--
T Consensus 151 ~~~~~~~~i~~~v~~~~-~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~ 229 (420)
T PRK08318 151 QVPELVEMYTRWVKRGS-RLPVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGY 229 (420)
T ss_pred CCHHHHHHHHHHHHhcc-CCcEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccc
Confidence 45677888999999875 689999987633 3456778889999999997555332 00 0010 00011
Q ss_pred CCCCh----HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCccc
Q psy10999 293 AGLPW----ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVG 368 (447)
Q Consensus 293 ~G~p~----~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~g 368 (447)
.|.+. ...+.++.+.+ + ..++|||+.|||.|+.|+.+.+..|||+|+++|++++-
T Consensus 230 SG~a~~p~~l~~v~~~~~~~---~-~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~----------------- 288 (420)
T PRK08318 230 CGPAVKPIALNMVAEIARDP---E-TRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQY----------------- 288 (420)
T ss_pred cchhhhHHHHHHHHHHHhcc---c-cCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccC-----------------
Confidence 23331 23333443321 1 12699999999999999999999999999999998750
Q ss_pred ccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 369 IATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 369 iat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
++ .++..+.+||+..|.. .|+.++.++.+
T Consensus 289 --------------gp----~ii~~I~~~L~~~l~~--~g~~si~e~iG 317 (420)
T PRK08318 289 --------------GF----RIVEDMISGLSHYMDE--KGFASLEDMVG 317 (420)
T ss_pred --------------Cc----hhHHHHHHHHHHHHHH--cCcchHHHHhc
Confidence 12 2466788899999999 88888777764
No 58
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=98.85 E-value=2.8e-08 Score=98.95 Aligned_cols=118 Identities=22% Similarity=0.214 Sum_probs=80.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeecc---HHHHHHHHHHCCCcEEEEecCCCCCCCc-----cccccccCCC---
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEVG---VGVVASGVAKGKAEHIVISGHDGGTGAS-----SWTGIKNAGL--- 295 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~G---i~~~A~~a~~aGaD~I~VsG~~GGtg~a-----~~~~~~~~G~--- 295 (447)
.+.+.+.+.++.+|+.. +.||+||+-.... +...++.+.++|+|+|++.|.-.+.... +.......|+
T Consensus 145 ~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~ 223 (289)
T cd02810 145 QDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGA 223 (289)
T ss_pred cCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcH
Confidence 35567788899999876 7899999876433 2345677889999999998764322110 0000111222
Q ss_pred C----hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 296 P----WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 296 p----~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
+ ....+.++.+. +..++|||+.|||.|+.|+.+++++|||+|++||+++.
T Consensus 224 ~~~~~~~~~v~~i~~~-----~~~~ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~ 277 (289)
T cd02810 224 PIRPLALRWVARLAAR-----LQLDIPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW 277 (289)
T ss_pred HHHHHHHHHHHHHHHh-----cCCCCCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence 1 12223333332 22369999999999999999999999999999999875
No 59
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=98.84 E-value=2.3e-08 Score=102.29 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=82.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC------CCceEEEEeeecc---HHHHHHHHHHCCCcEEEEecCCCCCCCc--ccccccc-
Q psy10999 225 DIYSIEDLAELIYDLKCANP------NARISVKLVSEVG---VGVVASGVAKGKAEHIVISGHDGGTGAS--SWTGIKN- 292 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p------~~pI~VKlv~~~G---i~~~A~~a~~aGaD~I~VsG~~GGtg~a--~~~~~~~- 292 (447)
.....+.+.+.++++|+... .+||.||+.+... +...|+.+.++|+|+|++.|.--..... +......
T Consensus 184 ~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~G 263 (335)
T TIGR01036 184 DLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETG 263 (335)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCC
Confidence 34456778888888887642 3899999987553 5667788899999999987742100000 0000001
Q ss_pred --CCCC-hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 293 --AGLP-WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 293 --~G~p-~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
.|.| ...+|..+.+.... +..++|||+.|||.|+.|+.+.+..||++|++||++++
T Consensus 264 GlSG~~i~p~al~~v~~~~~~--~~~~ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 264 GLSGKPLQDKSTEIIRRLYAE--LQGRLPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred cccCHHHHHHHHHHHHHHHHH--hCCCCCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 1222 11233333333222 23469999999999999999999999999999999876
No 60
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=98.83 E-value=7.4e-08 Score=96.84 Aligned_cols=120 Identities=18% Similarity=0.157 Sum_probs=79.2
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccHH---HHHHHHHHC--CCcEEEEecCCCCC------CCcccc--ccccCC
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGVG---VVASGVAKG--KAEHIVISGHDGGT------GASSWT--GIKNAG 294 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~---~~A~~a~~a--GaD~I~VsG~~GGt------g~a~~~--~~~~~G 294 (447)
+++.+.+.++++|+.. .+||.||+-...... ..|..+.++ |+|+|++.|.-+.. ...+.. .....|
T Consensus 141 ~~~~~~~i~~~v~~~~-~iPv~vKl~p~~~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG 219 (294)
T cd04741 141 DFDATLEYLTAVKAAY-SIPVGVKTPPYTDPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGG 219 (294)
T ss_pred CHHHHHHHHHHHHHhc-CCCEEEEeCCCCCHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCC
Confidence 5677888999999875 579999987744322 334445567 99999976543211 011100 011223
Q ss_pred CC----hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 295 LP----WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 295 ~p----~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
++ ...+|..+.+.-+. +..++|||+.|||.|+.|+++.+..|||+|+++|+++.
T Consensus 220 ~SG~~i~~~al~~v~~~~~~--~~~~ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 220 LAGAYLHPLALGNVRTFRRL--LPSEIQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred cCchhhHHHHHHHHHHHHHh--cCCCCCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 33 22344444433222 22369999999999999999999999999999999875
No 61
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=98.75 E-value=7.9e-08 Score=93.59 Aligned_cols=104 Identities=16% Similarity=0.060 Sum_probs=79.0
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeec---cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEV---GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAET 304 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~---Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev 304 (447)
+++.+.+.++.+|+. ++||.||+-... .....|+.+.++|+|+|+|+..-.|+ +.+....+.++
T Consensus 119 dp~~l~~iv~av~~~--~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~Vd~~~~g~-----------~~a~~~~I~~i 185 (231)
T TIGR00736 119 NKELLKEFLTKMKEL--NKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHVDAMYPGK-----------PYADMDLLKIL 185 (231)
T ss_pred CHHHHHHHHHHHHcC--CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEEeeCCCCC-----------chhhHHHHHHH
Confidence 456678888999854 689999987632 22356788999999999996432211 11345667777
Q ss_pred HHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 305 HQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 305 ~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
.+.+ + .+|||+.|||.|..|+.+++..|||+|++||+.|.
T Consensus 186 ~~~~-----~-~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~ 225 (231)
T TIGR00736 186 SEEF-----N-DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILK 225 (231)
T ss_pred HHhc-----C-CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence 7654 1 49999999999999999999999999999998764
No 62
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=98.55 E-value=1.7e-07 Score=93.95 Aligned_cols=122 Identities=19% Similarity=0.206 Sum_probs=71.5
Q ss_pred CCCHHHH-HHHHHHHHHhCCCCceEEEEeeecc-H--HHHHHHHHHCCCcEEEEecCCCCCC------Ccccccccc---
Q psy10999 226 IYSIEDL-AELIYDLKCANPNARISVKLVSEVG-V--GVVASGVAKGKAEHIVISGHDGGTG------ASSWTGIKN--- 292 (447)
Q Consensus 226 ~~s~edl-~~~I~~Lr~~~p~~pI~VKlv~~~G-i--~~~A~~a~~aGaD~I~VsG~~GGtg------~a~~~~~~~--- 292 (447)
+...+++ .+.++.+|+.. ++||.||+.+... . ...+..+.+.|+|+|++.|.-...- ..+......
T Consensus 143 ~~~~~~~~~~i~~~v~~~~-~~Pv~vKL~p~~~~~~~~~~~~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGl 221 (295)
T PF01180_consen 143 FGQDPELVAEIVRAVREAV-DIPVFVKLSPNFTDIEPFAIAAELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGL 221 (295)
T ss_dssp GGGHHHHHHHHHHHHHHHH-SSEEEEEE-STSSCHHHHHHHHHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEE
T ss_pred cccCHHHHHHHHHHHHhcc-CCCEEEEecCCCCchHHHHHHHHhhccceeEEEEecCccCcccccchhcceeeccccCCc
Confidence 3334444 45566666654 7899999987332 2 2344455588999998544311100 000000000
Q ss_pred CCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 293 AGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 293 ~G~p~-~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
.|.+. ..+|.-+.+..+. +++++|||+.|||.|+.|+.+.+.+||+.|+++|++++
T Consensus 222 SG~~i~p~aL~~V~~~~~~--~~~~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~ 278 (295)
T PF01180_consen 222 SGPAIRPIALRWVRELRKA--LGQDIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIY 278 (295)
T ss_dssp EEGGGHHHHHHHHHHHHHH--TTTSSEEEEESS--SHHHHHHHHHHTESEEEESHHHHH
T ss_pred CchhhhhHHHHHHHHHHhc--cccceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhh
Confidence 23332 2345555444332 23579999999999999999999999999999999876
No 63
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.54 E-value=7.8e-07 Score=90.28 Aligned_cols=106 Identities=15% Similarity=0.131 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeee---cc--HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSE---VG--VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAE 303 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~---~G--i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~e 303 (447)
++-+.+.++.+|+.. +.||.||+-.. .+ ....++.+.++|+|.|+|.|..... ...|.+....+.+
T Consensus 116 ~~~~~ei~~~vr~~~-~~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~~~~--------~~~~~~~~~~i~~ 186 (319)
T TIGR00737 116 PDLIGKIVKAVVDAV-DIPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLHGRTRAQ--------GYSGEANWDIIAR 186 (319)
T ss_pred HHHHHHHHHHHHhhc-CCCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEEcccccc--------cCCCchhHHHHHH
Confidence 345677888898876 58999997431 11 2345677889999999997542111 1123344555666
Q ss_pred HHHHHHhcCCCCceEEEEcCCCCChHHHHHHH-HcCCCeeccChHHHH
Q psy10999 304 THQVLALNNLRSRVVLQADGQIRTGFDVVVAA-LLGADEIGLSTAPLI 350 (447)
Q Consensus 304 v~~~l~~~glr~~v~viadGGIrtg~Dv~kAl-aLGAd~V~iGt~~L~ 350 (447)
+.+.+ ++|||+.|||.|+.|+.+++ ..|||+|++||+++.
T Consensus 187 i~~~~-------~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~ 227 (319)
T TIGR00737 187 VKQAV-------RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG 227 (319)
T ss_pred HHHcC-------CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence 65543 59999999999999999999 679999999999874
No 64
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=98.53 E-value=2.3e-07 Score=87.24 Aligned_cols=96 Identities=27% Similarity=0.182 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEE--EEecCCCCCCCccccccccCCCChHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHI--VISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 307 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I--~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~ 307 (447)
+++.++|.++|+.+ +-+++.....+++..+.++|+|+| +++|+..-| + + -.|....+.+..+.
T Consensus 79 ~~l~~li~~i~~~~------~l~MADist~ee~~~A~~~G~D~I~TTLsGYT~~t---~-----~-~~pD~~lv~~l~~~ 143 (192)
T PF04131_consen 79 ETLEELIREIKEKY------QLVMADISTLEEAINAAELGFDIIGTTLSGYTPYT---K-----G-DGPDFELVRELVQA 143 (192)
T ss_dssp S-HHHHHHHHHHCT------SEEEEE-SSHHHHHHHHHTT-SEEE-TTTTSSTTS---T-----T-SSHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHhC------cEEeeecCCHHHHHHHHHcCCCEEEcccccCCCCC---C-----C-CCCCHHHHHHHHhC
Confidence 56788899999974 334555556788999999999999 566664433 1 2 34777777766542
Q ss_pred HHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 308 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 308 l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
.+|||+.|+|.|+.++.+|+.+||++|.+|++.
T Consensus 144 --------~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAI 176 (192)
T PF04131_consen 144 --------DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAI 176 (192)
T ss_dssp --------TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHH
T ss_pred --------CCcEeecCCCCCHHHHHHHHhcCCeEEEECccc
Confidence 599999999999999999999999999999975
No 65
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=98.52 E-value=7.4e-07 Score=86.89 Aligned_cols=97 Identities=22% Similarity=0.211 Sum_probs=72.9
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeec--cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEV--GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETH 305 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~--Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~ 305 (447)
+++.+.+.++.+|+. +.||.||+-... .....++.+.++|+|+|++++...|. ......+.++.
T Consensus 124 ~p~~l~eiv~avr~~--~~pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~------------~ad~~~I~~i~ 189 (233)
T cd02911 124 DPERLSEFIKALKET--GVPVSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGN------------HADLKKIRDIS 189 (233)
T ss_pred CHHHHHHHHHHHHhc--CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCC------------CCcHHHHHHhc
Confidence 456778889999984 789999986532 23456778889999999886542221 11123344432
Q ss_pred HHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChH
Q psy10999 306 QVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 347 (447)
Q Consensus 306 ~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~ 347 (447)
.++|||+.|||.|..|+.+++..|||+|++||+
T Consensus 190 ---------~~ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~ 222 (233)
T cd02911 190 ---------TELFIIGNNSVTTIESAKEMFSYGADMVSVARA 222 (233)
T ss_pred ---------CCCEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence 259999999999999999999999999999997
No 66
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=98.50 E-value=1.1e-06 Score=89.42 Aligned_cols=107 Identities=15% Similarity=0.119 Sum_probs=78.4
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeec-----cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEV-----GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 302 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~-----Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ 302 (447)
+++-+.+.++.+|+.. ++||.||+-... .....++.+.++|+|.|+|.|. |.. ....|.+....+.
T Consensus 117 ~p~~~~eiv~av~~a~-d~pv~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~r---t~~-----~~~~G~a~~~~i~ 187 (321)
T PRK10415 117 YPDLVKSILTEVVNAV-DVPVTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGR---TRA-----CLFNGEAEYDSIR 187 (321)
T ss_pred CHHHHHHHHHHHHHhc-CCceEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecC---ccc-----cccCCCcChHHHH
Confidence 4556678888998876 679999985311 1234566788999999999753 311 1123434445666
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH-cCCCeeccChHHHH
Q psy10999 303 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL-LGADEIGLSTAPLI 350 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla-LGAd~V~iGt~~L~ 350 (447)
++.+.+ ++|||+.|||.|..|+.+++. .|||+|++||+++.
T Consensus 188 ~ik~~~-------~iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l~ 229 (321)
T PRK10415 188 AVKQKV-------SIPVIANGDITDPLKARAVLDYTGADALMIGRAAQG 229 (321)
T ss_pred HHHHhc-------CCcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhhc
Confidence 666643 599999999999999999997 69999999998874
No 67
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=98.48 E-value=1.2e-06 Score=84.10 Aligned_cols=106 Identities=19% Similarity=0.173 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeeec----cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSEV----GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAET 304 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~~----Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev 304 (447)
++-+.+.|+.+|+..+ .||.||+-... .....++.+.++|+|+|+|.+..... ...+.+....+.++
T Consensus 108 ~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~--------~~~~~~~~~~~~~i 178 (231)
T cd02801 108 PELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHGRTREQ--------RYSGPADWDYIAEI 178 (231)
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECCCCHHH--------cCCCCCCHHHHHHH
Confidence 3445678899998765 79999975421 12234556778999999997642211 01122334445554
Q ss_pred HHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc-CCCeeccChHHHH
Q psy10999 305 HQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-GADEIGLSTAPLI 350 (447)
Q Consensus 305 ~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL-GAd~V~iGt~~L~ 350 (447)
.+. .++||+++|||++..|+.+++.. |||+|++||+++.
T Consensus 179 ~~~-------~~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~ 218 (231)
T cd02801 179 KEA-------VSIPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG 218 (231)
T ss_pred HhC-------CCCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence 442 26999999999999999999998 8999999999874
No 68
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=98.46 E-value=8.3e-07 Score=85.24 Aligned_cols=101 Identities=21% Similarity=0.105 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
++.+.++.+++. ++.++++- +....++..+.++|+|+|.++.+ |.|+... ....+....+.++.+.+
T Consensus 106 ~~~~~i~~~~~~-~~i~vi~~----v~t~ee~~~a~~~G~d~i~~~~~-g~t~~~~-----~~~~~~~~~i~~i~~~~-- 172 (221)
T PRK01130 106 TLAELVKRIKEY-PGQLLMAD----CSTLEEGLAAQKLGFDFIGTTLS-GYTEETK-----KPEEPDFALLKELLKAV-- 172 (221)
T ss_pred CHHHHHHHHHhC-CCCeEEEe----CCCHHHHHHHHHcCCCEEEcCCc-eeecCCC-----CCCCcCHHHHHHHHHhC--
Confidence 345677888775 57776654 23456678899999999987533 3333211 12223456666666643
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
++||++.|||+|+.|+.+++.+|||+|++|+.++
T Consensus 173 -----~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~ 206 (221)
T PRK01130 173 -----GCPVIAEGRINTPEQAKKALELGAHAVVVGGAIT 206 (221)
T ss_pred -----CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhc
Confidence 5999999999999999999999999999999865
No 69
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=98.38 E-value=2.7e-06 Score=77.57 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCC-hHHHHHHHHHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP-WELGVAETHQV 307 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p-~~~~L~ev~~~ 307 (447)
++.+.+.++++|+.+|+.++++|+....... . ..+.+.|+|+|.+++..+++.... ..+ ....+..+..
T Consensus 98 ~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~-~-~~~~~~g~d~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~- 167 (200)
T cd04722 98 AREDLELIRELREAVPDVKVVVKLSPTGELA-A-AAAEEAGVDEVGLGNGGGGGGGRD-------AVPIADLLLILAKR- 167 (200)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEECCCCccc-h-hhHHHcCCCEEEEcCCcCCCCCcc-------CchhHHHHHHHHHh-
Confidence 3445678899998877889999975422211 1 126789999999998765443210 111 1122222211
Q ss_pred HHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 308 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 308 l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
..++||+++|||.++.++.+++.+|||+|++||
T Consensus 168 ------~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 168 ------GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred ------cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 236999999999999999999999999999986
No 70
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=98.37 E-value=3.8e-06 Score=85.37 Aligned_cols=107 Identities=19% Similarity=0.131 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHhCC-CCceEEEEeeec----cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCC-hHHHHH
Q psy10999 229 IEDLAELIYDLKCANP-NARISVKLVSEV----GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP-WELGVA 302 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p-~~pI~VKlv~~~----Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p-~~~~L~ 302 (447)
++-+.+.++.+|+..+ +.||.||+=... .....++.+.++|+|.|+|.|. |.. +...|.+ -...+.
T Consensus 116 ~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~R---t~~-----~~y~g~~~~~~~i~ 187 (312)
T PRK10550 116 PELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVHGR---TKE-----DGYRAEHINWQAIG 187 (312)
T ss_pred HHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEECCC---CCc-----cCCCCCcccHHHHH
Confidence 3456778899998875 589999975421 1224566788999999999753 321 1123433 235566
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH-cCCCeeccChHHHH
Q psy10999 303 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL-LGADEIGLSTAPLI 350 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla-LGAd~V~iGt~~L~ 350 (447)
++.+.+ ++|||+.|+|.|+.|+.+++. -|||+|++||++|.
T Consensus 188 ~ik~~~-------~iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~ 229 (312)
T PRK10550 188 EIRQRL-------TIPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN 229 (312)
T ss_pred HHHhhc-------CCcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence 666553 599999999999999999995 68999999998875
No 71
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=98.36 E-value=2.8e-06 Score=81.55 Aligned_cols=101 Identities=24% Similarity=0.145 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
..++++++++.. +.++++.. -...++..+.++|+|+|.+..+ |.|+... ....+....+.++.+.+
T Consensus 111 ~~~~i~~~~~~g-~~~iiv~v----~t~~ea~~a~~~G~d~i~~~~~-g~t~~~~-----~~~~~~~~~l~~i~~~~--- 176 (219)
T cd04729 111 LAELIKRIHEEY-NCLLMADI----STLEEALNAAKLGFDIIGTTLS-GYTEETA-----KTEDPDFELLKELRKAL--- 176 (219)
T ss_pred HHHHHHHHHHHh-CCeEEEEC----CCHHHHHHHHHcCCCEEEccCc-ccccccc-----CCCCCCHHHHHHHHHhc---
Confidence 456677888764 56777652 2346678889999999976544 3332211 11224456666666542
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
++||++.|||+++.|+.+++.+|||+|++|++++-
T Consensus 177 ----~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~ 211 (219)
T cd04729 177 ----GIPVIAEGRINSPEQAAKALELGADAVVVGSAITR 211 (219)
T ss_pred ----CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence 59999999999999999999999999999999763
No 72
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=98.35 E-value=4.8e-06 Score=84.33 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhC-CCCceEEEEeeec----cH-----HHHHHHHHHCCCcEEEEecCCCCCCCccccccc--cCCCC-hH
Q psy10999 232 LAELIYDLKCAN-PNARISVKLVSEV----GV-----GVVASGVAKGKAEHIVISGHDGGTGASSWTGIK--NAGLP-WE 298 (447)
Q Consensus 232 l~~~I~~Lr~~~-p~~pI~VKlv~~~----Gi-----~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~--~~G~p-~~ 298 (447)
+.+.|+.+|+.. ++.||.||+-... |. ...++.+.+.|+|+|.|++..... +..... ..+.+ ..
T Consensus 194 ~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~---~~~~~~~~~~~~~~~~ 270 (327)
T cd02803 194 LLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSGGSYES---PPPIIPPPYVPEGYFL 270 (327)
T ss_pred HHHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcc---cccccCCCCCCcchhH
Confidence 367888889876 4679999977521 11 124567788999999998653221 110000 01111 22
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc-CCCeeccChHHHH
Q psy10999 299 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-GADEIGLSTAPLI 350 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL-GAd~V~iGt~~L~ 350 (447)
..+..+.+.+ ++||++.|||+|..++.+++.. |||.|++||+++.
T Consensus 271 ~~~~~ir~~~-------~iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la 316 (327)
T cd02803 271 ELAEKIKKAV-------KIPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA 316 (327)
T ss_pred HHHHHHHHHC-------CCCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence 3334444432 5999999999999999999999 7999999999875
No 73
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=98.32 E-value=4.7e-06 Score=80.27 Aligned_cols=103 Identities=22% Similarity=0.239 Sum_probs=72.7
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.++++++. +.++++++. ....+..+.+.|+|+|.+.+.+-+++..+ ...+....+.++.+..
T Consensus 93 ~~~~~~~~~--~i~~i~~v~----~~~~~~~~~~~gad~i~~~~~~~~G~~~~------~~~~~~~~i~~i~~~~----- 155 (236)
T cd04730 93 EVVERLKAA--GIKVIPTVT----SVEEARKAEAAGADALVAQGAEAGGHRGT------FDIGTFALVPEVRDAV----- 155 (236)
T ss_pred HHHHHHHHc--CCEEEEeCC----CHHHHHHHHHcCCCEEEEeCcCCCCCCCc------cccCHHHHHHHHHHHh-----
Confidence 345566653 567777632 23556778889999999987632221111 0123455666666543
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhccc
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCT 355 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~ 355 (447)
++||++.|||.++.|+.+++..|||+|.+|++++...++.
T Consensus 156 --~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~ 195 (236)
T cd04730 156 --DIPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESG 195 (236)
T ss_pred --CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccC
Confidence 5899999999999999999999999999999999877654
No 74
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=98.26 E-value=1.7e-05 Score=75.38 Aligned_cols=96 Identities=24% Similarity=0.200 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEE--EEecCCCCCCCccccccccCCCChHHHHHHHHHHH
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHI--VISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I--~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
++.++|...| +|+. + +++....-+++.-+.++|+|+| ++||+.+-+- ..--|....+.++.++
T Consensus 115 ~~~~~i~~~k--~~~~-l---~MAD~St~ee~l~a~~~G~D~IGTTLsGYT~~~~--------~~~~pDf~lvk~l~~~- 179 (229)
T COG3010 115 DLEELIARIK--YPGQ-L---AMADCSTFEEGLNAHKLGFDIIGTTLSGYTGYTE--------KPTEPDFQLVKQLSDA- 179 (229)
T ss_pred hHHHHHHHhh--cCCc-E---EEeccCCHHHHHHHHHcCCcEEecccccccCCCC--------CCCCCcHHHHHHHHhC-
Confidence 4666677743 3452 2 2444445567888999999999 8999866331 1223667777766652
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
..+||+.|.+-|+.++.+|+.+||++|.+|++.
T Consensus 180 -------~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAI 212 (229)
T COG3010 180 -------GCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAI 212 (229)
T ss_pred -------CCeEEeeCCCCCHHHHHHHHHhCCeEEEECccc
Confidence 589999999999999999999999999999864
No 75
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=98.22 E-value=1.1e-05 Score=82.10 Aligned_cols=114 Identities=11% Similarity=0.088 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeecc-------HHHHHHHHHHCCCcEEEEecCCC-CCCCccccccccCCCChHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVG-------VGVVASGVAKGKAEHIVISGHDG-GTGASSWTGIKNAGLPWEL 299 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~G-------i~~~A~~a~~aGaD~I~VsG~~G-Gtg~a~~~~~~~~G~p~~~ 299 (447)
.++-+.+.++.+++.. +.||.||+=.... ....+..+.++|+|.|+|.|... -++.++.. ....+..-..
T Consensus 107 ~p~~~~~iv~av~~~~-~~PVsvKiR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~-~~~~~~~~~~ 184 (318)
T TIGR00742 107 NADLVADCVKAMQEAV-NIPVTVKHRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKE-NREIPPLRYE 184 (318)
T ss_pred CHHHHHHHHHHHHHHh-CCCeEEEEecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccc-cccCCchhHH
Confidence 3455678899999875 5799999754210 11235667899999999976532 11111110 0011111122
Q ss_pred HHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 300 GVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 300 ~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
.+.++.+.+ .++|||+.|||+|..|+.+++. |||+|++||++|.
T Consensus 185 ~i~~vk~~~------~~ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~ 228 (318)
T TIGR00742 185 RVYQLKKDF------PHLTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE 228 (318)
T ss_pred HHHHHHHhC------CCCcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence 344444432 2599999999999999999997 9999999999875
No 76
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=98.20 E-value=1.6e-05 Score=81.53 Aligned_cols=113 Identities=14% Similarity=0.083 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeeec-c------HHHHHHHHHHCCCcEEEEecCCCC-CCCccccccccCCCChHHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSEV-G------VGVVASGVAKGKAEHIVISGHDGG-TGASSWTGIKNAGLPWELG 300 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~~-G------i~~~A~~a~~aGaD~I~VsG~~GG-tg~a~~~~~~~~G~p~~~~ 300 (447)
++-+.+.++.+|+.. +.||.||+=... + ....+..+.++|+|.|+|.+..+. +|.++.. ....+......
T Consensus 118 p~~~~eiv~avr~~v-~~pVsvKiR~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~~~~g~~~~~-~~~~~~~~~~~ 195 (333)
T PRK11815 118 PELVADCVKAMKDAV-SIPVTVKHRIGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKAWLKGLSPKE-NREIPPLDYDR 195 (333)
T ss_pred HHHHHHHHHHHHHHc-CCceEEEEEeeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCchhhcCCCccc-cccCCCcCHHH
Confidence 344677888898875 679999963211 1 123456678999999999854321 1111000 00111112334
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 301 L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
+.++.+.+ .++|||+.|||.|..|+.+++. |||+|++||+++.
T Consensus 196 i~~v~~~~------~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~ 238 (333)
T PRK11815 196 VYRLKRDF------PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYH 238 (333)
T ss_pred HHHHHHhC------CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHh
Confidence 44554431 2599999999999999999997 8999999999875
No 77
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=98.10 E-value=1.3e-05 Score=81.31 Aligned_cols=107 Identities=21% Similarity=0.150 Sum_probs=74.9
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeecc-----HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVG-----VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 302 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~G-----i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ 302 (447)
+++.+.+.|..+++.. +.||.||+=.... ....+..+.++|++.|+|-|.... +..-|.+..+.+.
T Consensus 106 ~p~~~~~iv~~~~~~~-~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~vH~Rt~~--------q~~~~~a~w~~i~ 176 (309)
T PF01207_consen 106 DPDLLAEIVKAVRKAV-PIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITVHGRTRK--------QRYKGPADWEAIA 176 (309)
T ss_dssp -HHHHHHHHHHHHHH--SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEEECS-TT--------CCCTS---HHHHH
T ss_pred ChHHhhHHHHhhhccc-ccceEEecccccccchhHHHHHHHHhhhcccceEEEecCchh--------hcCCcccchHHHH
Confidence 4566788999999876 4799999765332 223567788999999999765322 3445666777888
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc-CCCeeccChHHHH
Q psy10999 303 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-GADEIGLSTAPLI 350 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL-GAd~V~iGt~~L~ 350 (447)
++.+.+ .+|||+-|+|.|..|+-+.+.. |+|+|++||..|.
T Consensus 177 ~i~~~~-------~ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~ 218 (309)
T PF01207_consen 177 EIKEAL-------PIPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG 218 (309)
T ss_dssp HCHHC--------TSEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred HHhhcc-------cceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence 888765 4999999999999999999987 9999999998763
No 78
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=98.06 E-value=3.9e-05 Score=80.00 Aligned_cols=110 Identities=15% Similarity=0.114 Sum_probs=71.4
Q ss_pred HHHHHHHHHHhCC-CCceEEEEeee------------------ccH--H---HHHHHHHHCCCcEEEEecCCCCCCCccc
Q psy10999 232 LAELIYDLKCANP-NARISVKLVSE------------------VGV--G---VVASGVAKGKAEHIVISGHDGGTGASSW 287 (447)
Q Consensus 232 l~~~I~~Lr~~~p-~~pI~VKlv~~------------------~Gi--~---~~A~~a~~aGaD~I~VsG~~GGtg~a~~ 287 (447)
+.+.|+.+|+..+ +.||.||+-.. .|. . ..++.+.++|+|+|.|++.. ......
T Consensus 204 ~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~g~--~~~~~~ 281 (382)
T cd02931 204 AIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDAGS--YDAWYW 281 (382)
T ss_pred HHHHHHHHHHhcCCCceEEEEEechhhccccccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCCCC--Cccccc
Confidence 4678888998775 56999997641 011 1 24556778999999998632 110000
Q ss_pred ccc-ccCCCC-hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 288 TGI-KNAGLP-WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 288 ~~~-~~~G~p-~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
... ...+.. +......+.+.+ ++||++.|+|+++.++.++++-| ||.|+|||++|.
T Consensus 282 ~~~~~~~~~~~~~~~~~~ik~~~-------~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 340 (382)
T cd02931 282 NHPPMYQKKGMYLPYCKALKEVV-------DVPVIMAGRMEDPELASEAINEGIADMISLGRPLLA 340 (382)
T ss_pred ccCCccCCcchhHHHHHHHHHHC-------CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhHh
Confidence 000 001111 112233333332 58999999999999999999987 999999999885
No 79
>KOG1436|consensus
Probab=98.04 E-value=5e-05 Score=76.32 Aligned_cols=149 Identities=19% Similarity=0.204 Sum_probs=98.3
Q ss_pred CCCCCHHHHHHHHHHHHHh-----CC-CCceEEEEeeec---cHHHHHHHHHHCCCcEEEEecCCCCCCCcccccc----
Q psy10999 224 HDIYSIEDLAELIYDLKCA-----NP-NARISVKLVSEV---GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGI---- 290 (447)
Q Consensus 224 ~~~~s~edl~~~I~~Lr~~-----~p-~~pI~VKlv~~~---Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~---- 290 (447)
+++..-.+|.+++...... ++ ..|+.||+.... ...++|..+.+...|.++|+|.. -..|..+.
T Consensus 225 r~lq~k~~L~~ll~~v~~a~~~~~~~~~~pvl~kiapDL~~~el~dia~v~kk~~idg~Ivsntt---Vsrp~~~~~~~~ 301 (398)
T KOG1436|consen 225 RSLQKKSDLRKLLTKVVQARDKLPLGKKPPVLVKIAPDLSEKELKDIALVVKKLNIDGLIVSNTT---VSRPKASLVNKL 301 (398)
T ss_pred hhhhhHHHHHHHHHHHHHHHhccccCCCCceEEEeccchhHHHHHHHHHHHHHhCccceeecCce---eecCcccccccc
Confidence 4444446666666554432 22 238999977622 12245666778999999988641 10000000
Q ss_pred -c----cCCCCh----HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhccc
Q psy10999 291 -K----NAGLPW----ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCH 361 (447)
Q Consensus 291 -~----~~G~p~----~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~ 361 (447)
. -.|.|. ...+++.... +|.+||||-.|||.+|.|..+-+..||+.|+++|++-+
T Consensus 302 ~~etGGLsG~plk~~st~~vR~mY~l-----t~g~IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----------- 365 (398)
T KOG1436|consen 302 KEETGGLSGPPLKPISTNTVRAMYTL-----TRGKIPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----------- 365 (398)
T ss_pred ccccCCCCCCccchhHHHHHHHHHHh-----ccCCCceEeecCccccHhHHHHHhcCchHHHHHHHHhh-----------
Confidence 0 013332 2223333332 57799999999999999999999999999999998865
Q ss_pred CCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 362 LNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 362 ~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
+|. ..++.++.|+..+|.. .|..++.+..+
T Consensus 366 -----------------------eGp-~i~~kIk~El~~ll~~--kG~t~v~d~iG 395 (398)
T KOG1436|consen 366 -----------------------EGP-AIIEKIKRELSALLKA--KGFTSVDDAIG 395 (398)
T ss_pred -----------------------cCc-hhHHHHHHHHHHHHHh--cCCCcHHHhcc
Confidence 221 2478889999999999 99999887664
No 80
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=3.8e-05 Score=78.46 Aligned_cols=110 Identities=21% Similarity=0.148 Sum_probs=82.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeecc-----HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHH
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEVG-----VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGV 301 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~G-----i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L 301 (447)
.+++-+.+.|+.+++..+++||.||+=.... ....++.+.++|+|.|+|-|. |-+ +...|....+.+
T Consensus 118 ~~p~lv~~iv~a~~~av~~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~~ltVHgR---tr~-----~~y~~~ad~~~I 189 (323)
T COG0042 118 KNPELLAEIVKAMVEAVGDIPVTVKIRLGWDDDDILALEIARILEDAGADALTVHGR---TRA-----QGYLGPADWDYI 189 (323)
T ss_pred CCHHHHHHHHHHHHHhhCCCCeEEEEecccCcccccHHHHHHHHHhcCCCEEEEecc---cHH-----hcCCCccCHHHH
Confidence 3456678899999998756899999755221 123677788999999999654 311 223344555777
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc-CCCeeccChHHHH
Q psy10999 302 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-GADEIGLSTAPLI 350 (447)
Q Consensus 302 ~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL-GAd~V~iGt~~L~ 350 (447)
.++.+.+ ++ +|||+-|+|.|..|+...+.- |+|+|++||..+-
T Consensus 190 ~~vk~~~-----~~-ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~ 233 (323)
T COG0042 190 KELKEAV-----PS-IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG 233 (323)
T ss_pred HHHHHhC-----CC-CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence 8887764 33 999999999999999999995 6999999997753
No 81
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=98.00 E-value=5.5e-05 Score=77.70 Aligned_cols=102 Identities=14% Similarity=0.024 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeec-------cH-----HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHH
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEV-------GV-----GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWEL 299 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~-------Gi-----~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~ 299 (447)
+.+.|+.+|+..+.-+|+||+.+.- |. ...++.+.++|+|+|.||+. ++... . ......
T Consensus 205 ~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~~ee~~~~~~~l~~~g~d~i~vs~g--~~~~~----~---~~~~~~ 275 (338)
T cd02933 205 LLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDPEATFSYLAKELNKRGLAYLHLVEP--RVAGN----P---EDQPPD 275 (338)
T ss_pred HHHHHHHHHHHhCCCceEEEECccccCCCCCCCCCHHHHHHHHHHHHHcCCcEEEEecC--CCCCc----c---cccchH
Confidence 4678888998765438999986531 11 13456677899999999753 22211 0 223334
Q ss_pred HHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 300 GVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 300 ~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
...++.+.+ ++||++.|||. +.++.++++-| ||.|+|||++|.
T Consensus 276 ~~~~ik~~~-------~ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~la 319 (338)
T cd02933 276 FLDFLRKAF-------KGPLIAAGGYD-AESAEAALADGKADLVAFGRPFIA 319 (338)
T ss_pred HHHHHHHHc-------CCCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhhh
Confidence 455555553 59999999997 99999999987 999999999875
No 82
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=97.98 E-value=4.4e-05 Score=74.68 Aligned_cols=77 Identities=26% Similarity=0.226 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 257 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 257 Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
.-...|+.+.++|+|+|-.=|.-=|+| .|+...+.|..+.+. .++|||++|||.|+.|+.+|+.
T Consensus 132 dd~~~ar~l~~~G~~~vmPlg~pIGsg---------~Gi~~~~~I~~I~e~-------~~vpVI~egGI~tpeda~~Ame 195 (248)
T cd04728 132 DDPVLAKRLEDAGCAAVMPLGSPIGSG---------QGLLNPYNLRIIIER-------ADVPVIVDAGIGTPSDAAQAME 195 (248)
T ss_pred CCHHHHHHHHHcCCCEeCCCCcCCCCC---------CCCCCHHHHHHHHHh-------CCCcEEEeCCCCCHHHHHHHHH
Confidence 456678899999999995422211122 244444556655543 1599999999999999999999
Q ss_pred cCCCeeccChHHH
Q psy10999 337 LGADEIGLSTAPL 349 (447)
Q Consensus 337 LGAd~V~iGt~~L 349 (447)
||||+|.+|++..
T Consensus 196 lGAdgVlV~SAIt 208 (248)
T cd04728 196 LGADAVLLNTAIA 208 (248)
T ss_pred cCCCEEEEChHhc
Confidence 9999999999864
No 83
>PRK00208 thiG thiazole synthase; Reviewed
Probab=97.98 E-value=4.5e-05 Score=74.70 Aligned_cols=77 Identities=26% Similarity=0.224 Sum_probs=55.7
Q ss_pred cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 257 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 257 Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
.-...|+.++++|+|+|-.=|.-=|+| .|+...+.+..+.+. .++|||++|||.++.|+.+|+.
T Consensus 132 ~d~~~ak~l~~~G~~~vmPlg~pIGsg---------~gi~~~~~i~~i~e~-------~~vpVIveaGI~tpeda~~Ame 195 (250)
T PRK00208 132 DDPVLAKRLEEAGCAAVMPLGAPIGSG---------LGLLNPYNLRIIIEQ-------ADVPVIVDAGIGTPSDAAQAME 195 (250)
T ss_pred CCHHHHHHHHHcCCCEeCCCCcCCCCC---------CCCCCHHHHHHHHHh-------cCCeEEEeCCCCCHHHHHHHHH
Confidence 455678899999999995422211122 233333445555443 2599999999999999999999
Q ss_pred cCCCeeccChHHH
Q psy10999 337 LGADEIGLSTAPL 349 (447)
Q Consensus 337 LGAd~V~iGt~~L 349 (447)
||||+|.++++..
T Consensus 196 lGAdgVlV~SAIt 208 (250)
T PRK00208 196 LGADAVLLNTAIA 208 (250)
T ss_pred cCCCEEEEChHhh
Confidence 9999999999864
No 84
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=97.98 E-value=5.4e-05 Score=89.10 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=99.4
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEE-cCCCCChHHHHHHHHcCC
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQA-DGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~via-dGGIrtg~Dv~kAlaLGA 339 (447)
.|..+++.|+.+|++|-.+-. .+...+|.+.++..+|+.|.+.|+|.++.||+ +|.+|+.-|++..+.+||
T Consensus 602 ~A~~Av~~G~~ilILSDr~~~--------~~~~~IP~LLAv~aVH~hLir~glR~~vsLIveSGe~RevHhfA~LiGyGA 673 (1485)
T PRK11750 602 EAEQAVRDGTVLLVLSDRNIA--------KGRLPIPAAMAVGAVQHRLVDKGLRCDANIIVETASARDPHHFAVLLGFGA 673 (1485)
T ss_pred HHHHHHHCCCeEEEEcCCCCC--------CCcCCcCHHHHHHHHHHHHHHcCCcceeeEEEecCCcCCHHHHHHHHhcCh
Confidence 455677889999999987432 35678899999999999999999999999999 999999999999999999
Q ss_pred CeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcC-CcHHHHHHHHHHHHHHHHHHHhhhCCCCCCccccccc
Q psy10999 340 DEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA-GKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLGD 418 (447)
Q Consensus 340 d~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~-~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~~ 418 (447)
++|. |.|+ .++ .+..|..+. +. .-.+.+.||+..+..+|..+|.. ||++++...++.
T Consensus 674 ~AV~---PYLA-~et-i~~l~~~g~---------------l~~~~~~a~~ny~~A~~kGLlKImsK--MGIStl~SY~ga 731 (1485)
T PRK11750 674 TAVY---PYLA-YET-LGDLVDTGE---------------ILKDYRQVMLNYRKGINKGLYKIMSK--MGISTIASYRGS 731 (1485)
T ss_pred hhhh---hHHH-HHH-HHHHHhcCC---------------CCCCHHHHHHHHHHHHHHHHHHHHhh--cchhhHHhcCCc
Confidence 9994 4332 121 111121110 11 12588999999999999999999 999987665443
No 85
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.97 E-value=6.8e-05 Score=77.38 Aligned_cols=108 Identities=18% Similarity=0.123 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhCC-----CCceEEEEeeec----cH-----HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCCh
Q psy10999 232 LAELIYDLKCANP-----NARISVKLVSEV----GV-----GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW 297 (447)
Q Consensus 232 l~~~I~~Lr~~~p-----~~pI~VKlv~~~----Gi-----~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~ 297 (447)
+.+.|+.+|+..+ +.+|.+|+...- |. ...+..+.++|+|+|.|++.. .+.... ......
T Consensus 197 ~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~-~~~~~~-----~~~~~~ 270 (353)
T cd04735 197 PLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGIRMEDTLALVDKLADKGLDYLHISLWD-FDRKSR-----RGRDDN 270 (353)
T ss_pred HHHHHHHHHHHhccccCCCceEEEEECcccccCCCCCHHHHHHHHHHHHHcCCCEEEeccCc-cccccc-----cCCcch
Confidence 4677888888764 678999976521 22 124566788999999998642 221110 001112
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 298 ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 298 ~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
...+.++.+.+ ...+|||+.|||+|+.++.+++.-|||.|++||+++.
T Consensus 271 ~~~~~~ik~~~-----~~~iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia 318 (353)
T cd04735 271 QTIMELVKERI-----AGRLPLIAVGSINTPDDALEALETGADLVAIGRGLLV 318 (353)
T ss_pred HHHHHHHHHHh-----CCCCCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence 22233333332 2368999999999999999999999999999999885
No 86
>PRK00507 deoxyribose-phosphate aldolase; Provisional
Probab=97.95 E-value=7.3e-05 Score=72.51 Aligned_cols=102 Identities=20% Similarity=0.135 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeeeccHHH------HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSEVGVGV------VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 302 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~------~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ 302 (447)
++.+.+.|..+++.. .|+.+|++.|.+..+ ....+.++|+|+|..|-.-+.+| .+...+.
T Consensus 105 ~~~v~~ei~~v~~~~--~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIKTsTG~~~~g------------at~~~v~ 170 (221)
T PRK00507 105 WDAVEADIRAVVEAA--GGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVKTSTGFSTGG------------ATVEDVK 170 (221)
T ss_pred HHHHHHHHHHHHHhc--CCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCC------------CCHHHHH
Confidence 455667777877764 368999988776532 23457789999987742211111 3334455
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 303 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
.+.+.+ +++++|.++|||+|..|+...+.+||+.++..+..-
T Consensus 171 ~m~~~~-----~~~~~IKasGGIrt~~~a~~~i~aGA~riGtS~~~~ 212 (221)
T PRK00507 171 LMRETV-----GPRVGVKASGGIRTLEDALAMIEAGATRLGTSAGVA 212 (221)
T ss_pred HHHHHh-----CCCceEEeeCCcCCHHHHHHHHHcCcceEccCcHHH
Confidence 555543 457999999999999999999999999998877654
No 87
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=97.95 E-value=4.4e-05 Score=76.02 Aligned_cols=103 Identities=18% Similarity=0.021 Sum_probs=74.7
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCc---------------cc----------c
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGAS---------------SW----------T 288 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a---------------~~----------~ 288 (447)
++++.+|..+ ++|+ +........|..+.+.|+|+|--.|. |||+.- .. .
T Consensus 104 e~~~~~K~~f-~vpf----mad~~~l~EAlrai~~GadmI~Tt~e-~gTg~v~~av~hlr~~~~~~~~~~~~~~~~~~~~ 177 (287)
T TIGR00343 104 WTFHIDKKKF-KVPF----VCGARDLGEALRRINEGAAMIRTKGE-AGTGNIVEAVRHMRKINEEIRQIQNMLEEEDLAA 177 (287)
T ss_pred HHHHHHHHHc-CCCE----EccCCCHHHHHHHHHCCCCEEecccc-CCCccHHHHHHHHHHHHHHHHHHhcccchhHHhh
Confidence 5677888876 6666 22223345788899999999988887 667740 00 0
Q ss_pred ccccCCCChHHHHHHHHHHHHhcCCCCceEEE--EcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 289 GIKNAGLPWELGVAETHQVLALNNLRSRVVLQ--ADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 289 ~~~~~G~p~~~~L~ev~~~l~~~glr~~v~vi--adGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
+.+..+ |....|.++.+.. ++||+ +.|||.|+.|+..++.+|||+|.+|+.++-
T Consensus 178 ~a~~~~-~~~elLkei~~~~-------~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k 233 (287)
T TIGR00343 178 VAKELR-VPVELLLEVLKLG-------KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 233 (287)
T ss_pred hhcccC-CCHHHHHHHHHhC-------CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence 012234 4556677776642 58998 999999999999999999999999998763
No 88
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=97.94 E-value=0.00011 Score=75.73 Aligned_cols=110 Identities=17% Similarity=0.191 Sum_probs=71.7
Q ss_pred HHHHHHHHHHhCC-CCceEEEEeeec----cH-----HHHHHHHHHCC-CcEEEEecCCCCCCCc----cccccccCC-C
Q psy10999 232 LAELIYDLKCANP-NARISVKLVSEV----GV-----GVVASGVAKGK-AEHIVISGHDGGTGAS----SWTGIKNAG-L 295 (447)
Q Consensus 232 l~~~I~~Lr~~~p-~~pI~VKlv~~~----Gi-----~~~A~~a~~aG-aD~I~VsG~~GGtg~a----~~~~~~~~G-~ 295 (447)
+.+.|+.+|+..+ ..+|.+|+.... |. ...++.+.++| +|+|.|++. +.... ....-...+ .
T Consensus 194 ~~eiv~~ir~~vg~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g--~~~~~~~~~~~~~~~~~~~~ 271 (343)
T cd04734 194 LLEVLAAVRAAVGPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSAG--SYYTLLGLAHVVPSMGMPPG 271 (343)
T ss_pred HHHHHHHHHHHcCCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCCC--CCCcccccccccCCCCCCcc
Confidence 4678888888753 467888876521 11 13455677898 999999753 22110 000000011 1
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 296 PWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 296 p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
.+......+.+.+ .+||++.|+|+|..++.+++.-| ||+|++||+++.
T Consensus 272 ~~~~~~~~ik~~~-------~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~la 320 (343)
T cd04734 272 PFLPLAARIKQAV-------DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIA 320 (343)
T ss_pred hhHHHHHHHHHHc-------CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHh
Confidence 2234444555443 59999999999999999999987 999999999985
No 89
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.90 E-value=0.00012 Score=74.99 Aligned_cols=109 Identities=21% Similarity=0.185 Sum_probs=72.5
Q ss_pred HHHHHHHHHHhCC-CCceEEEEeee----ccH-----HHHHHHHHHCCCcEEEEecCCCCCCCccccc---cccCCC---
Q psy10999 232 LAELIYDLKCANP-NARISVKLVSE----VGV-----GVVASGVAKGKAEHIVISGHDGGTGASSWTG---IKNAGL--- 295 (447)
Q Consensus 232 l~~~I~~Lr~~~p-~~pI~VKlv~~----~Gi-----~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~---~~~~G~--- 295 (447)
..+.|+.+|+..+ +.+|.||+-.. .|. ...++.+.++|+|+|.|++. +...+... ......
T Consensus 202 ~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~eea~~ia~~Le~~Gvd~iev~~g---~~~~~~~~~~~~~~~~~~~~ 278 (338)
T cd04733 202 LLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEEDALEVVEALEEAGVDLVELSGG---TYESPAMAGAKKESTIAREA 278 (338)
T ss_pred HHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEecCC---CCCCccccccccCCccccch
Confidence 3678889998764 57999997531 122 12455678899999999753 32211110 000000
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 296 PWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 296 p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
.+.....++.+.+ ++||+++|+|.+..++.+++..| ||.|++||+++.
T Consensus 279 ~~~~~~~~ik~~v-------~iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~ia 327 (338)
T cd04733 279 YFLEFAEKIRKVT-------KTPLMVTGGFRTRAAMEQALASGAVDGIGLARPLAL 327 (338)
T ss_pred hhHHHHHHHHHHc-------CCCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhhh
Confidence 1123333444432 69999999999999999999997 899999999874
No 90
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=97.89 E-value=7.8e-05 Score=74.23 Aligned_cols=104 Identities=23% Similarity=0.068 Sum_probs=74.5
Q ss_pred HHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCC---------------------cccc---
Q psy10999 233 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGA---------------------SSWT--- 288 (447)
Q Consensus 233 ~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~---------------------a~~~--- 288 (447)
.+++..+|..+ +.|+ ++......+|..+.+.|+|+|--.++ |+|+. ++.+
T Consensus 101 ~~~~~~iK~~~-~~l~----MAD~stleEal~a~~~Gad~I~TTl~-gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~ 174 (283)
T cd04727 101 DEEHHIDKHKF-KVPF----VCGARNLGEALRRISEGAAMIRTKGE-AGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYA 174 (283)
T ss_pred HHHHHHHHHHc-CCcE----EccCCCHHHHHHHHHCCCCEEEecCC-CCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHh
Confidence 35788888876 6555 33334456788899999999977776 55664 0111
Q ss_pred ccccCCCChHHHHHHHHHHHHhcCCCCceEEE--EcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 289 GIKNAGLPWELGVAETHQVLALNNLRSRVVLQ--ADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 289 ~~~~~G~p~~~~L~ev~~~l~~~glr~~v~vi--adGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
+....+ |....|.++.+.+ ++||+ +.|||.|+.|+..++.+||++|.+|++++.
T Consensus 175 ~~~~~~-~d~elLk~l~~~~-------~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~ 230 (283)
T cd04727 175 VAKEIQ-APYELVKETAKLG-------RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 230 (283)
T ss_pred hhcccC-CCHHHHHHHHHhc-------CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence 011122 4456677776653 58996 999999999999999999999999998874
No 91
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=97.86 E-value=0.0001 Score=75.77 Aligned_cols=106 Identities=17% Similarity=0.051 Sum_probs=72.6
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeec----cH--H---HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHH
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEV----GV--G---VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 302 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~----Gi--~---~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ 302 (447)
+.+.|+.+|+.. +.||.||+-+.- |. . ..++.+.++|+|+|.|++. +.. +.......|. ......
T Consensus 195 ~~eii~~ir~~~-~~~v~vRis~~d~~~~G~~~~e~~~i~~~l~~~gvD~i~vs~g---~~~-~~~~~~~~~~-~~~~~~ 268 (337)
T PRK13523 195 LREIIDAVKEVW-DGPLFVRISASDYHPGGLTVQDYVQYAKWMKEQGVDLIDVSSG---AVV-PARIDVYPGY-QVPFAE 268 (337)
T ss_pred HHHHHHHHHHhc-CCCeEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCC---CCC-CCCCCCCccc-cHHHHH
Confidence 357888899887 569999987621 22 1 2455677899999999863 211 1000111121 233334
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 303 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
++.+.+ ++||++.|+|.|+.++.+++.-| ||.|+|||+++.
T Consensus 269 ~ik~~~-------~ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~ia 310 (337)
T PRK13523 269 HIREHA-------NIATGAVGLITSGAQAEEILQNNRADLIFIGRELLR 310 (337)
T ss_pred HHHhhc-------CCcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHHh
Confidence 444432 59999999999999999999988 999999999875
No 92
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.78 E-value=0.00019 Score=71.69 Aligned_cols=96 Identities=21% Similarity=0.138 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+++.+.|..+|+..|. ..|+..|+.....+..++++|+|+|.+++. ....|.++++.+.
T Consensus 166 g~i~~~v~~~k~~~p~---~~~I~VEv~tleea~~A~~~GaDiI~LDn~------------------~~e~l~~~v~~~~ 224 (273)
T PRK05848 166 KDLKEFIQHARKNIPF---TAKIEIECESLEEAKNAMNAGADIVMCDNM------------------SVEEIKEVVAYRN 224 (273)
T ss_pred CcHHHHHHHHHHhCCC---CceEEEEeCCHHHHHHHHHcCCCEEEECCC------------------CHHHHHHHHHHhh
Confidence 3567789999987663 355555777788899999999999998764 2355667666543
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
. ...++.|.++||| |...+.+...+|+|.+.+|++.-
T Consensus 225 ~--~~~~~~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 225 A--NYPHVLLEASGNI-TLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred c--cCCCeEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 2 1246889999999 99999999999999999999654
No 93
>KOG2335|consensus
Probab=97.74 E-value=0.0006 Score=69.86 Aligned_cols=137 Identities=18% Similarity=0.182 Sum_probs=93.7
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccHH---HHHHHHHHCCCcEEEEecCCCCCCCcccccccc--CCCChHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGVG---VVASGVAKGKAEHIVISGHDGGTGASSWTGIKN--AGLPWELGVA 302 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~---~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~--~G~p~~~~L~ 302 (447)
.++-+.+.|..++... ++||.+|+=...... +-|+.+.++|++.++|=|. |-. +++ .++...+++.
T Consensus 125 ~~eLv~e~V~~v~~~l-~~pVs~KIRI~~d~~kTvd~ak~~e~aG~~~ltVHGR---tr~-----~kg~~~~pad~~~i~ 195 (358)
T KOG2335|consen 125 NPELVGEMVSAVRANL-NVPVSVKIRIFVDLEKTVDYAKMLEDAGVSLLTVHGR---TRE-----QKGLKTGPADWEAIK 195 (358)
T ss_pred CHHHHHHHHHHHHhhc-CCCeEEEEEecCcHHHHHHHHHHHHhCCCcEEEEecc---cHH-----hcCCCCCCcCHHHHH
Confidence 3455577788888765 679999975533332 3577788999999999544 421 222 3444556777
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH-cCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcC
Q psy10999 303 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL-LGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA 381 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla-LGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~ 381 (447)
.+.+.+ .+ ||||+-|+|.+..|+-.++. -|||+|+.|+..|.-.+--- ...-..||.+++...-.+...+.
T Consensus 196 ~v~~~~-----~~-ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~--~~~~~~~~~~~~~~~l~~~~e~~ 267 (358)
T KOG2335|consen 196 AVRENV-----PD-IPVIANGNILSLEDVERCLKYTGADGVMSARGLLYNPALFL--TAGYGPTPWGCVEEYLDIAREFG 267 (358)
T ss_pred HHHHhC-----cC-CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhcCchhhc--cCCCCCCHHHHHHHHHHHHHHcC
Confidence 777664 44 99999999999999999998 99999999998776321110 02235677777766555544444
No 94
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=97.73 E-value=0.00024 Score=73.22 Aligned_cols=108 Identities=15% Similarity=0.123 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhCC-CCceEEEEeee----ccHH-----HHHHHHHHCCCcEEEEec--CCCCCCCccccccccCCC-ChH
Q psy10999 232 LAELIYDLKCANP-NARISVKLVSE----VGVG-----VVASGVAKGKAEHIVISG--HDGGTGASSWTGIKNAGL-PWE 298 (447)
Q Consensus 232 l~~~I~~Lr~~~p-~~pI~VKlv~~----~Gi~-----~~A~~a~~aGaD~I~VsG--~~GGtg~a~~~~~~~~G~-p~~ 298 (447)
+.+.|+.+|+..+ +.+|.||+... .|.. ..++.+.++|+|+|.||+ ++..+.. . ....+. .+.
T Consensus 190 ~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~---~-~~~~~~~~~~ 265 (353)
T cd02930 190 PVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEEVVALAKALEAAGADILNTGIGWHEARVPT---I-ATSVPRGAFA 265 (353)
T ss_pred HHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcc---c-cccCCchhhH
Confidence 4678888998763 56888887642 1111 245567789999999975 2222210 0 001111 133
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 299 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
....++.+.+ ++||++.|+|.+..++.+++.-| +|.|++||+++.
T Consensus 266 ~~~~~ik~~v-------~iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l~ 311 (353)
T cd02930 266 WATAKLKRAV-------DIPVIASNRINTPEVAERLLADGDADMVSMARPFLA 311 (353)
T ss_pred HHHHHHHHhC-------CCCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHHH
Confidence 4444555542 69999999999999999999987 999999999985
No 95
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=97.72 E-value=0.00098 Score=66.02 Aligned_cols=37 Identities=19% Similarity=0.026 Sum_probs=33.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 316 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 316 ~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
+.||+++|||+|+.++.+++..|||+|.+|+++.-.+
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~ 234 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKII 234 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHH
Confidence 4699999999999999999999999999999987544
No 96
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=97.71 E-value=0.00032 Score=71.81 Aligned_cols=107 Identities=19% Similarity=0.132 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhCC-CCceEEEEeee----ccH--H---HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCC-hHHH
Q psy10999 232 LAELIYDLKCANP-NARISVKLVSE----VGV--G---VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP-WELG 300 (447)
Q Consensus 232 l~~~I~~Lr~~~p-~~pI~VKlv~~----~Gi--~---~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p-~~~~ 300 (447)
+.+.|+.+|+..+ +.||.||+-.. .|. . ..++.+.+.|+|+|.|++. +.+... ....+.+ ....
T Consensus 207 ~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e~~~ia~~Le~~gvd~iev~~g-~~~~~~----~~~~~~~~~~~~ 281 (336)
T cd02932 207 LLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLEDSVELAKALKELGVDLIDVSSG-GNSPAQ----KIPVGPGYQVPF 281 (336)
T ss_pred HHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHHHHHHHHHHHHcCCCEEEECCC-CCCccc----ccCCCccccHHH
Confidence 4678888998874 67999997642 121 1 2445667889999999753 222110 0011111 2334
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 301 L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
+.++.+.+ ++||++.|+|.+..|+..++.-| ||.|++||+++.
T Consensus 282 ~~~ir~~~-------~iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~ 325 (336)
T cd02932 282 AERIRQEA-------GIPVIAVGLITDPEQAEAILESGRADLVALGRELLR 325 (336)
T ss_pred HHHHHhhC-------CCCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence 44444432 59999999999999999999999 999999999875
No 97
>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants. In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=97.71 E-value=0.00024 Score=71.34 Aligned_cols=128 Identities=21% Similarity=0.240 Sum_probs=87.4
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEE-cCCCCChHHHHHHHHcCC
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQA-DGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~via-dGGIrtg~Dv~kAlaLGA 339 (447)
.|..+++.|+.+|++|-.+.+ .+...+|...++..+|+.|.+.|+|.++.||+ +|-+|+.-|++..+.+||
T Consensus 147 ea~~Av~~G~~ilILsDr~~~--------~~~~~IP~lLAv~avh~~Li~~glR~~~slIvesge~re~Hh~a~LlGyGA 218 (287)
T PF04898_consen 147 EAEAAVREGANILILSDRNAS--------PDRAPIPSLLAVSAVHHHLIREGLRTRVSLIVESGEAREVHHFATLLGYGA 218 (287)
T ss_dssp HHHHHHHCT-SEEEEESTC-C--------TTEEE--HHHHHHHHHHHHHCTT-CCC-EEEEEESS--SHHHHHHHHCTT-
T ss_pred HHHHHHHcCCcEEEECCCCCC--------cCcccccHHHHHHHHHHHHHHcCCcceeeEEEecCCcccHHHHHHHHcCCH
Confidence 456778899999999977543 34567899999999999999999999999988 788999999999999999
Q ss_pred CeeccChHHHH-HhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcccccc
Q psy10999 340 DEIGLSTAPLI-TMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPLVWLG 417 (447)
Q Consensus 340 d~V~iGt~~L~-algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~~l~~ 417 (447)
|+|. |+|. ..... .+..+..+ +. .-++.+.||...+...|..+|.. ||+..+...++
T Consensus 219 ~AV~---PYla~e~~~~---~~~~~~~~------~~-------~~~~~~~ny~~a~~kGllKimSK--MGIstl~SY~g 276 (287)
T PF04898_consen 219 DAVN---PYLAYETIRE---LAERGELP------EL-------SPEEAIKNYRKALEKGLLKIMSK--MGISTLQSYRG 276 (287)
T ss_dssp SEEE---EHCCHHHHHH---CCCCCCCC------T---------HHHHHHHHHHHHHHHHHHHHHC--TT--BHHHHCC
T ss_pred hhhc---HHHHHHHHHH---HHhcCCCC------CC-------CHHHHHHHHHHHHHHHHHHHHHh--cChHHhhhccc
Confidence 9983 4332 11100 11111111 00 13688999999999999999999 99998766543
No 98
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=97.70 E-value=0.00041 Score=72.06 Aligned_cols=108 Identities=19% Similarity=0.154 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhCCC-CceEEEEeee---c--cH-----HHHHHHHHHCC-CcEEEEecCCCCCCCccccccccCC-CChH
Q psy10999 232 LAELIYDLKCANPN-ARISVKLVSE---V--GV-----GVVASGVAKGK-AEHIVISGHDGGTGASSWTGIKNAG-LPWE 298 (447)
Q Consensus 232 l~~~I~~Lr~~~p~-~pI~VKlv~~---~--Gi-----~~~A~~a~~aG-aD~I~VsG~~GGtg~a~~~~~~~~G-~p~~ 298 (447)
+.+.++.+|+.++. .||++++.+. . |. ...++.+.+.| +|+|.+++.+--.+.. +...+ -+..
T Consensus 202 ~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~----~~~~~~~~~~ 277 (363)
T COG1902 202 LLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGT----ITVSGPGYQV 277 (363)
T ss_pred HHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCC----ccccccchhH
Confidence 36788889988864 4799998872 1 21 13466778899 7999998743211111 11111 0111
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 299 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
.-...+... .++|||+.|+|.++..+..+++-| ||.|+|||+||.
T Consensus 278 ~~a~~i~~~-------~~~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~la 323 (363)
T COG1902 278 EFAARIKKA-------VRIPVIAVGGINDPEQAEEILASGRADLVAMGRPFLA 323 (363)
T ss_pred HHHHHHHHh-------cCCCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhhc
Confidence 111122222 259999999999999999999998 999999999985
No 99
>PRK07695 transcriptional regulator TenI; Provisional
Probab=97.66 E-value=0.00044 Score=65.51 Aligned_cols=97 Identities=15% Similarity=0.067 Sum_probs=63.9
Q ss_pred HHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCC
Q psy10999 236 IYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRS 315 (447)
Q Consensus 236 I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~ 315 (447)
+.++|+..|+..|++. + .....+..+.+.|+|+|.++ +--.|...+ .........+.++.+.+
T Consensus 86 ~~~~r~~~~~~~ig~s-~---~s~e~a~~a~~~Gadyi~~g-~v~~t~~k~-----~~~~~g~~~l~~~~~~~------- 148 (201)
T PRK07695 86 VRSVREKFPYLHVGYS-V---HSLEEAIQAEKNGADYVVYG-HVFPTDCKK-----GVPARGLEELSDIARAL------- 148 (201)
T ss_pred HHHHHHhCCCCEEEEe-C---CCHHHHHHHHHcCCCEEEEC-CCCCCCCCC-----CCCCCCHHHHHHHHHhC-------
Confidence 4556665666666664 1 22345677889999999763 322221110 11112234455554432
Q ss_pred ceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 316 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 316 ~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
++||++.||| +..++..++.+||++|.+++.++.
T Consensus 149 ~ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~ 182 (201)
T PRK07695 149 SIPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS 182 (201)
T ss_pred CCCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence 5999999999 999999999999999999998864
No 100
>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]
Probab=97.65 E-value=0.0002 Score=69.21 Aligned_cols=103 Identities=23% Similarity=0.204 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHH------HHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVA------SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGV 301 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A------~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L 301 (447)
+++...+.|..+++.-++. +.||++.|.+..++. ..+.++|||||.-|-.-...| .|.+-+
T Consensus 107 ~~~~V~~eI~~v~~a~~~~-~~lKVIlEt~~Lt~ee~~~A~~i~~~aGAdFVKTSTGf~~~g------------AT~edv 173 (228)
T COG0274 107 NWEAVEREIRAVVEACADA-VVLKVILETGLLTDEEKRKACEIAIEAGADFVKTSTGFSAGG------------ATVEDV 173 (228)
T ss_pred CHHHHHHHHHHHHHHhCCC-ceEEEEEeccccCHHHHHHHHHHHHHhCCCEEEcCCCCCCCC------------CCHHHH
Confidence 3566778899999887663 899999998876432 246789999998763212222 233444
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 302 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 302 ~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
....+.+ +.++-|=++|||||..|+.+.+.+||..++..+..
T Consensus 174 ~lM~~~v-----g~~vgvKaSGGIrt~eda~~~i~aga~RiGtSs~v 215 (228)
T COG0274 174 KLMKETV-----GGRVGVKASGGIRTAEDAKAMIEAGATRIGTSSGV 215 (228)
T ss_pred HHHHHHh-----ccCceeeccCCcCCHHHHHHHHHHhHHHhccccHH
Confidence 4444443 45788999999999999999999999988777754
No 101
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=97.64 E-value=0.00036 Score=67.87 Aligned_cols=77 Identities=23% Similarity=0.209 Sum_probs=57.0
Q ss_pred cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 257 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 257 Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
.-...|+++.++|+..|--=|.-=|+| .|+-....|..+.+.+ +||||+|+||.+++|++.|+.
T Consensus 132 ~D~v~akrL~d~GcaavMPlgsPIGSg---------~Gi~n~~~l~~i~~~~-------~vPvIvDAGiG~pSdaa~AME 195 (247)
T PF05690_consen 132 DDPVLAKRLEDAGCAAVMPLGSPIGSG---------RGIQNPYNLRIIIERA-------DVPVIVDAGIGTPSDAAQAME 195 (247)
T ss_dssp S-HHHHHHHHHTT-SEBEEBSSSTTT------------SSTHHHHHHHHHHG-------SSSBEEES---SHHHHHHHHH
T ss_pred CCHHHHHHHHHCCCCEEEecccccccC---------cCCCCHHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHH
Confidence 345678999999999998877654443 3666778888887664 699999999999999999999
Q ss_pred cCCCeeccChHHH
Q psy10999 337 LGADEIGLSTAPL 349 (447)
Q Consensus 337 LGAd~V~iGt~~L 349 (447)
||||+|.+-|+..
T Consensus 196 lG~daVLvNTAiA 208 (247)
T PF05690_consen 196 LGADAVLVNTAIA 208 (247)
T ss_dssp TT-SEEEESHHHH
T ss_pred cCCceeehhhHHh
Confidence 9999999999864
No 102
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.63 E-value=0.0003 Score=68.45 Aligned_cols=75 Identities=17% Similarity=0.050 Sum_probs=56.3
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc-C
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-G 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL-G 338 (447)
..++.+.+.|+|.|++++..-.+ . .-|. ....+.++.+.+ ++||+++|||++..|+.+++.+ |
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g-~-------~~g~-~~~~i~~i~~~~-------~~pvia~GGi~~~~di~~~l~~~g 216 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDG-T-------KKGY-DLELIRAVSSAV-------NIPVIASGGAGKPEHFVEAFEEGG 216 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCC-C-------CCCC-CHHHHHHHHhhC-------CCCEEEeCCCCCHHHHHHHHHhCC
Confidence 45677889999999998764211 1 1132 334455555432 6999999999999999999998 9
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
||+|.+|+++..
T Consensus 217 ~dgv~vg~al~~ 228 (243)
T cd04731 217 ADAALAASIFHF 228 (243)
T ss_pred CCEEEEeHHHHc
Confidence 999999999865
No 103
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=97.63 E-value=0.00062 Score=65.13 Aligned_cols=99 Identities=21% Similarity=0.071 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+++.+++...+.. +..+.+- +--..++..+.+.|+|+|.+.+.++.+ .+ +....+.++.+.+
T Consensus 108 ~~~~~~~~~~~~~--g~~~~v~----v~~~~e~~~~~~~g~~~i~~t~~~~~~----------~~-~~~~~~~~l~~~~- 169 (217)
T cd00331 108 EQLKELYELAREL--GMEVLVE----VHDEEELERALALGAKIIGINNRDLKT----------FE-VDLNTTERLAPLI- 169 (217)
T ss_pred HHHHHHHHHHHHc--CCeEEEE----ECCHHHHHHHHHcCCCEEEEeCCCccc----------cC-cCHHHHHHHHHhC-
Confidence 3445555555443 3333222 223345778889999999887544321 12 2224444444432
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
..++|+++.|||.++.|+.+++.+|||+|.+|++++-
T Consensus 170 ----~~~~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~ 206 (217)
T cd00331 170 ----PKDVILVSESGISTPEDVKRLAEAGADAVLIGESLMR 206 (217)
T ss_pred ----CCCCEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 2368999999999999999999999999999999763
No 104
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=97.63 E-value=0.00071 Score=65.13 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=57.9
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..++.+.+.|+|.|++.+..- .+. ..| +....+.++.+.. ++||++.|||++..|+.+++..||
T Consensus 150 ~~~~~~~~~ga~~iii~~~~~-~g~-------~~g-~~~~~i~~i~~~~-------~ipvi~~GGi~~~~di~~~~~~Ga 213 (234)
T cd04732 150 ELAKRFEELGVKAIIYTDISR-DGT-------LSG-PNFELYKELAAAT-------GIPVIASGGVSSLDDIKALKELGV 213 (234)
T ss_pred HHHHHHHHcCCCEEEEEeecC-CCc-------cCC-CCHHHHHHHHHhc-------CCCEEEecCCCCHHHHHHHHHCCC
Confidence 456678899999998865421 111 124 4456777776653 699999999999999999999999
Q ss_pred CeeccChHHHH
Q psy10999 340 DEIGLSTAPLI 350 (447)
Q Consensus 340 d~V~iGt~~L~ 350 (447)
++|++|++++.
T Consensus 214 ~gv~vg~~~~~ 224 (234)
T cd04732 214 AGVIVGKALYE 224 (234)
T ss_pred CEEEEeHHHHc
Confidence 99999999875
No 105
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=97.61 E-value=0.00067 Score=65.54 Aligned_cols=73 Identities=16% Similarity=0.029 Sum_probs=55.2
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHH-HHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVV-AALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~k-AlaLG 338 (447)
..++.+.++|+|.|++++....+. ..| +....+.++.+.+ .+||++.|||++..|+.+ ....|
T Consensus 157 ~~~~~~~~~G~d~i~i~~i~~~g~--------~~g-~~~~~~~~i~~~~-------~ipvia~GGi~s~~di~~~l~~~g 220 (232)
T TIGR03572 157 EWAREAEQLGAGEILLNSIDRDGT--------MKG-YDLELIKTVSDAV-------SIPVIALGGAGSLDDLVEVALEAG 220 (232)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCC--------cCC-CCHHHHHHHHhhC-------CCCEEEECCCCCHHHHHHHHHHcC
Confidence 456778899999999998532210 123 3345566665542 599999999999999999 66799
Q ss_pred CCeeccChHH
Q psy10999 339 ADEIGLSTAP 348 (447)
Q Consensus 339 Ad~V~iGt~~ 348 (447)
||+|.+|++|
T Consensus 221 adgV~vg~a~ 230 (232)
T TIGR03572 221 ASAVAAASLF 230 (232)
T ss_pred CCEEEEehhh
Confidence 9999999987
No 106
>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae. As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.
Probab=97.57 E-value=0.00032 Score=67.37 Aligned_cols=110 Identities=17% Similarity=0.246 Sum_probs=75.3
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccHH---HHHHHHHHCCCcEEEEecCCCCCCCccccc----cccCCCChHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGVG---VVASGVAKGKAEHIVISGHDGGTGASSWTG----IKNAGLPWELG 300 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~---~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~----~~~~G~p~~~~ 300 (447)
+.++..++.++-|+.-|+.++.|-+...-... ..|..+.++|+|.|.-. |||...|... .-.-..|++.+
T Consensus 101 ~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQTE---Ggtss~p~~~g~lglIekaapTLAa 177 (242)
T PF04481_consen 101 SAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQTE---GGTSSKPTSPGILGLIEKAAPTLAA 177 (242)
T ss_pred cHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEEcC---CCCCCCCCCcchHHHHHHHhHHHHH
Confidence 45677788999999999999999866532332 34667889999999764 5555444211 00112345444
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 301 L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
-.++.+.+ ++||+++.||.. .-+=.|++.||.+|++|++.
T Consensus 178 ay~ISr~v-------~iPVlcASGlS~-vT~PmAiaaGAsGVGVGSav 217 (242)
T PF04481_consen 178 AYAISRAV-------SIPVLCASGLSA-VTAPMAIAAGASGVGVGSAV 217 (242)
T ss_pred HHHHHhcc-------CCceEeccCcch-hhHHHHHHcCCcccchhHHh
Confidence 44444432 699999999965 44668999999999999864
No 107
>TIGR00126 deoC deoxyribose-phosphate aldolase. Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.
Probab=97.56 E-value=0.00079 Score=64.90 Aligned_cols=98 Identities=22% Similarity=0.241 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHH------HHHHHHHCCCcEEEEe-cCCCCCCCccccccccCCCChHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGV------VASGVAKGKAEHIVIS-GHDGGTGASSWTGIKNAGLPWELGVA 302 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~------~A~~a~~aGaD~I~Vs-G~~GGtg~a~~~~~~~~G~p~~~~L~ 302 (447)
+...+.|..+++.-. .+.+|++.|.+..+ ..+.+.++|||+|..| |..+ .|+ +..-+.
T Consensus 102 ~~v~~ei~~i~~~~~--g~~lKvIlE~~~L~~~ei~~a~~ia~eaGADfvKTsTGf~~-~ga------------t~~dv~ 166 (211)
T TIGR00126 102 EVVYDDIRAVVEACA--GVLLKVIIETGLLTDEEIRKACEICIDAGADFVKTSTGFGA-GGA------------TVEDVR 166 (211)
T ss_pred HHHHHHHHHHHHHcC--CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC-CCC------------CHHHHH
Confidence 445567777777653 45678888776432 2335678999999886 4432 222 223333
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChH
Q psy10999 303 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 347 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~ 347 (447)
...+.+ +++++|-++|||||..|+...+.+||+.++..+.
T Consensus 167 ~m~~~v-----~~~v~IKaaGGirt~~~a~~~i~aGa~riGts~~ 206 (211)
T TIGR00126 167 LMRNTV-----GDTIGVKASGGVRTAEDAIAMIEAGASRIGASAG 206 (211)
T ss_pred HHHHHh-----ccCCeEEEeCCCCCHHHHHHHHHHhhHHhCcchH
Confidence 333433 3479999999999999999999999999876543
No 108
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=97.54 E-value=0.0034 Score=61.55 Aligned_cols=105 Identities=16% Similarity=0.082 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
++..+.+..+++. +...++=+-+.... ...+.+.+..-.++.+ +..+|+|.. + -.....-+.++.+.
T Consensus 116 ~~~~~~~~~~~~~--Gl~~~~~v~p~T~~-e~l~~~~~~~~~~l~m-sv~~~~g~~---~----~~~~~~~i~~lr~~-- 182 (244)
T PRK13125 116 DDLEKYVEIIKNK--GLKPVFFTSPKFPD-LLIHRLSKLSPLFIYY-GLRPATGVP---L----PVSVERNIKRVRNL-- 182 (244)
T ss_pred HHHHHHHHHHHHc--CCCEEEEECCCCCH-HHHHHHHHhCCCEEEE-EeCCCCCCC---c----hHHHHHHHHHHHHh--
Confidence 4555667777775 45555543332222 2344556666666666 566666531 1 11122334444332
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 351 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~a 351 (447)
.++.||+++|||+|..++.+++..|||++.+|+.++-.
T Consensus 183 ----~~~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~ 220 (244)
T PRK13125 183 ----VGNKYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEE 220 (244)
T ss_pred ----cCCCCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHH
Confidence 23468999999999999999999999999999998753
No 109
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=97.53 E-value=0.00064 Score=70.71 Aligned_cols=108 Identities=14% Similarity=0.055 Sum_probs=67.8
Q ss_pred HHHHHHHHHHhCC-CCceEEEEeeec----c--H-HH----HHHHHHHCCCcEEEEecCCCCCCCcccccc-ccCCCChH
Q psy10999 232 LAELIYDLKCANP-NARISVKLVSEV----G--V-GV----VASGVAKGKAEHIVISGHDGGTGASSWTGI-KNAGLPWE 298 (447)
Q Consensus 232 l~~~I~~Lr~~~p-~~pI~VKlv~~~----G--i-~~----~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~-~~~G~p~~ 298 (447)
+.+.|+.+|+..+ +.+|.||+..+. + . .. .++.+.+ .+|+|.|+.. .......... ...+. +.
T Consensus 203 ~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~-~~D~i~vs~g--~~~~~~~~~~~~~~~~-~~ 278 (370)
T cd02929 203 WRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDE-LPDLWDVNVG--DWANDGEDSRFYPEGH-QE 278 (370)
T ss_pred HHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHh-hCCEEEecCC--CccccccccccCCccc-cH
Confidence 4678889998874 578999987532 1 1 11 2233333 4899999752 1110000000 00111 22
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 299 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
....++.+.+ ++|||+.|+|.+..++.+++.-| ||.|++||++|.
T Consensus 279 ~~~~~ik~~~-------~~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~la 324 (370)
T cd02929 279 PYIKFVKQVT-------SKPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSIA 324 (370)
T ss_pred HHHHHHHHHC-------CCCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhhh
Confidence 3333444432 58999999999999999999988 999999999985
No 110
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.53 E-value=0.00062 Score=67.29 Aligned_cols=76 Identities=24% Similarity=0.125 Sum_probs=59.3
Q ss_pred HHHHHHHHHCCCcEEEEecCCC-CCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHH-H
Q psy10999 259 GVVASGVAKGKAEHIVISGHDG-GTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA-L 336 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~G-Gtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAl-a 336 (447)
.+.++.+.+.|++.|++.+-.- |+ ..| |....+.++.+.. .+|||++|||++..|+.+++ .
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~---------~~G-~d~~~i~~~~~~~-------~ipvIasGGv~s~eD~~~l~~~ 217 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGT---------MKG-YDLELLKSFRNAL-------KIPLIALGGAGSLDDIVEAILN 217 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCC---------cCC-CCHHHHHHHHhhC-------CCCEEEeCCCCCHHHHHHHHHH
Confidence 3556778899999999875532 12 124 4556677776652 69999999999999999999 8
Q ss_pred cCCCeeccChHHHHH
Q psy10999 337 LGADEIGLSTAPLIT 351 (447)
Q Consensus 337 LGAd~V~iGt~~L~a 351 (447)
.|+|+|.+|++|.+.
T Consensus 218 ~GvdgVivg~a~~~~ 232 (258)
T PRK01033 218 LGADAAAAGSLFVFK 232 (258)
T ss_pred CCCCEEEEcceeeeC
Confidence 999999999999773
No 111
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=97.52 E-value=0.0011 Score=64.34 Aligned_cols=76 Identities=18% Similarity=0.039 Sum_probs=57.7
Q ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
...++.+.+.|+|.|++.+..-.+. ..| +....+.++.+.+ .+||++.|||++..|+.+.+.+|
T Consensus 152 ~~~~~~~~~~G~~~i~~~~~~~~g~--------~~g-~~~~~i~~i~~~~-------~iPvia~GGI~~~~di~~~~~~G 215 (241)
T PRK13585 152 VEAAKRFEELGAGSILFTNVDVEGL--------LEG-VNTEPVKELVDSV-------DIPVIASGGVTTLDDLRALKEAG 215 (241)
T ss_pred HHHHHHHHHcCCCEEEEEeecCCCC--------cCC-CCHHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHcC
Confidence 4567778899999999876521110 113 3445667766643 59999999999999999999999
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
|++|.+||+++.
T Consensus 216 a~gv~vgsa~~~ 227 (241)
T PRK13585 216 AAGVVVGSALYK 227 (241)
T ss_pred CCEEEEEHHHhc
Confidence 999999999864
No 112
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.51 E-value=0.00072 Score=76.57 Aligned_cols=107 Identities=19% Similarity=0.129 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhCC-CCceEEEEeee----ccH--H---HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCC-ChHHH
Q psy10999 232 LAELIYDLKCANP-NARISVKLVSE----VGV--G---VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGL-PWELG 300 (447)
Q Consensus 232 l~~~I~~Lr~~~p-~~pI~VKlv~~----~Gi--~---~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~-p~~~~ 300 (447)
+.+.|+.+|+..+ +.||.||+-+. .|. . ..++.+.++|+|+|.|++ |++..... . ..+. .....
T Consensus 604 ~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~~~~~~~~l~~~g~d~i~vs~--g~~~~~~~--~-~~~~~~~~~~ 678 (765)
T PRK08255 604 PLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDDAVEIARAFKAAGADLIDVSS--GQVSKDEK--P-VYGRMYQTPF 678 (765)
T ss_pred HHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHHHHHHHHHHHhcCCcEEEeCC--CCCCcCCC--C-CcCccccHHH
Confidence 4678888998864 57999998752 121 1 245667889999999985 33322110 0 1111 11122
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 301 L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
..++.+.+ ++||++.|+|+++.++.+++.-| ||.|++||++|.
T Consensus 679 ~~~ik~~~-------~~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l~ 722 (765)
T PRK08255 679 ADRIRNEA-------GIATIAVGAISEADHVNSIIAAGRADLCALARPHLA 722 (765)
T ss_pred HHHHHHHc-------CCEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHHh
Confidence 22333321 59999999999999999999977 999999999985
No 113
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.47 E-value=0.0011 Score=66.41 Aligned_cols=96 Identities=26% Similarity=0.194 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
.+.+.|..+|+..|..+| ..|+.....+..++++|+|.|.+++.. ..-+.++++.+++
T Consensus 168 ~i~~av~~~r~~~~~~kI----eVEv~~leea~~a~~agaDiI~LDn~~------------------~e~l~~~v~~l~~ 225 (278)
T PRK08385 168 PLEEAIRRAKEFSVYKVV----EVEVESLEDALKAAKAGADIIMLDNMT------------------PEEIREVIEALKR 225 (278)
T ss_pred HHHHHHHHHHHhCCCCcE----EEEeCCHHHHHHHHHcCcCEEEECCCC------------------HHHHHHHHHHHHh
Confidence 366788889887665444 345667788999999999999999861 2457888888877
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
.+.++++.+.++||| |...+.+-...|+|.+.+|.+..
T Consensus 226 ~~~~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 226 EGLRERVKIEVSGGI-TPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred cCcCCCEEEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence 666678999999999 99999999999999999998654
No 114
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=97.46 E-value=0.00047 Score=66.40 Aligned_cols=74 Identities=20% Similarity=0.152 Sum_probs=55.2
Q ss_pred HHHHHHHHCCCcEEEEecCC-CCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
..++.+.+.|+|.|++-.-. -|+ ..| +....+.++.+.+ ++||++.|||++..|+.+++..|
T Consensus 149 ~~~~~~~~~g~~~ii~~~~~~~g~---------~~g-~~~~~i~~i~~~~-------~ipvia~GGi~~~~di~~~~~~G 211 (230)
T TIGR00007 149 ELAKRLEELGLEGIIYTDISRDGT---------LSG-PNFELTKELVKAV-------NVPVIASGGVSSIDDLIALKKLG 211 (230)
T ss_pred HHHHHHHhCCCCEEEEEeecCCCC---------cCC-CCHHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHCC
Confidence 34566788999977754332 111 123 3456666666542 69999999999999999999999
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
||+|.+||+++.
T Consensus 212 adgv~ig~a~~~ 223 (230)
T TIGR00007 212 VYGVIVGKALYE 223 (230)
T ss_pred CCEEEEeHHHHc
Confidence 999999999875
No 115
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=97.43 E-value=0.00029 Score=69.25 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=61.3
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
-...|+++.++|+..|--=|.-=|+| -|+.....|..+.+. .++||++++||.++.|+++|+.|
T Consensus 147 D~v~a~rLed~Gc~aVMPlgsPIGSg---------~Gl~n~~~l~~i~e~-------~~vpVivdAGIgt~sDa~~AmEl 210 (267)
T CHL00162 147 DPMLAKHLEDIGCATVMPLGSPIGSG---------QGLQNLLNLQIIIEN-------AKIPVIIDAGIGTPSEASQAMEL 210 (267)
T ss_pred CHHHHHHHHHcCCeEEeeccCcccCC---------CCCCCHHHHHHHHHc-------CCCcEEEeCCcCCHHHHHHHHHc
Confidence 34678999999999997766543443 366666777766653 36999999999999999999999
Q ss_pred CCCeeccChHHHH
Q psy10999 338 GADEIGLSTAPLI 350 (447)
Q Consensus 338 GAd~V~iGt~~L~ 350 (447)
|||+|.+.++...
T Consensus 211 GaDgVL~nSaIak 223 (267)
T CHL00162 211 GASGVLLNTAVAQ 223 (267)
T ss_pred CCCEEeecceeec
Confidence 9999999998653
No 116
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=97.41 E-value=0.00075 Score=67.57 Aligned_cols=103 Identities=22% Similarity=0.065 Sum_probs=73.3
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccc---------------------c---c
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSW---------------------T---G 289 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~---------------------~---~ 289 (447)
++++.+|..+ ++|+ +.......+|..+.+.|+|+|--.|- .|||.-.. + +
T Consensus 111 ~~~~~~K~~f-~~~f----mad~~~l~EAlrai~~GadmI~Ttge-~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~ 184 (293)
T PRK04180 111 EEYHIDKWDF-TVPF----VCGARNLGEALRRIAEGAAMIRTKGE-AGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTA 184 (293)
T ss_pred HHHHHHHHHc-CCCE----EccCCCHHHHHHHHHCCCCeeeccCC-CCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhh
Confidence 5678888876 6666 33233446788899999999988776 55663210 0 0
Q ss_pred cccCCCChHHHHHHHHHHHHhcCCCCceEEE--EcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 290 IKNAGLPWELGVAETHQVLALNNLRSRVVLQ--ADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 290 ~~~~G~p~~~~L~ev~~~l~~~glr~~v~vi--adGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
.+..+ |....|.++.+.. ++||+ +.|||.|+.|+..++.+||++|.+|+.++.
T Consensus 185 a~~~~-~~~elL~ei~~~~-------~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k 239 (293)
T PRK04180 185 AKELQ-APYELVKEVAELG-------RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK 239 (293)
T ss_pred ccccC-CCHHHHHHHHHhC-------CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence 01122 3445667766642 58997 999999999999999999999999998764
No 117
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.41 E-value=0.0016 Score=64.12 Aligned_cols=76 Identities=17% Similarity=0.020 Sum_probs=56.7
Q ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
...++.+.++|+|.|++++.+-.+. ..| +....+.++.+.. ++|||++|||++..|+.+++.+|
T Consensus 158 ~~~~~~l~~~G~~~iivt~i~~~g~--------~~g-~~~~~~~~i~~~~-------~ipvia~GGi~s~~di~~~~~~g 221 (254)
T TIGR00735 158 VEWAKEVEKLGAGEILLTSMDKDGT--------KSG-YDLELTKAVSEAV-------KIPVIASGGAGKPEHFYEAFTKG 221 (254)
T ss_pred HHHHHHHHHcCCCEEEEeCcCcccC--------CCC-CCHHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHcC
Confidence 3456778899999999976532110 112 3345566665542 59999999999999999999999
Q ss_pred -CCeeccChHHHH
Q psy10999 339 -ADEIGLSTAPLI 350 (447)
Q Consensus 339 -Ad~V~iGt~~L~ 350 (447)
||+|.+|+++..
T Consensus 222 ~~dgv~~g~a~~~ 234 (254)
T TIGR00735 222 KADAALAASVFHY 234 (254)
T ss_pred CcceeeEhHHHhC
Confidence 999999998753
No 118
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=97.38 E-value=0.0021 Score=61.17 Aligned_cols=95 Identities=26% Similarity=0.224 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHH------HHHHHHHHCCCcEEEEe-cCCCCCCCccccccccCCCChHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVG------VVASGVAKGKAEHIVIS-GHDGGTGASSWTGIKNAGLPWELGVA 302 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~------~~A~~a~~aGaD~I~Vs-G~~GGtg~a~~~~~~~~G~p~~~~L~ 302 (447)
+...+.|.++++.-. .+.+|++.+.+-. ..++.+.++|||+|..+ |..+ .| .+..-+.
T Consensus 101 ~~~~~ei~~v~~~~~--g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~-~~------------at~~~v~ 165 (203)
T cd00959 101 EAVYEEIAAVVEACG--GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGP-GG------------ATVEDVK 165 (203)
T ss_pred HHHHHHHHHHHHhcC--CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCC-CC------------CCHHHHH
Confidence 334566777777654 4566767666532 23445789999999885 4321 11 2222223
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 303 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
...+.+ +.+++|-++|||+|..++...+.+||+.++.
T Consensus 166 ~~~~~~-----~~~v~ik~aGGikt~~~~l~~~~~g~~riG~ 202 (203)
T cd00959 166 LMKEAV-----GGRVGVKAAGGIRTLEDALAMIEAGATRIGT 202 (203)
T ss_pred HHHHHh-----CCCceEEEeCCCCCHHHHHHHHHhChhhccC
Confidence 333332 2479999999999999999999999998764
No 119
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.38 E-value=0.0013 Score=64.44 Aligned_cols=75 Identities=16% Similarity=0.075 Sum_probs=57.4
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc--
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-- 337 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL-- 337 (447)
..++.+.+.|++.|++-+-..-+. ..| |....+.++.+.+ ++|||++|||+|..|+.+++.+
T Consensus 150 ~~~~~l~~~G~~~iiv~~~~~~g~--------~~G-~d~~~i~~i~~~~-------~ipviasGGi~s~~D~~~l~~~~~ 213 (241)
T PRK14024 150 EVLERLDSAGCSRYVVTDVTKDGT--------LTG-PNLELLREVCART-------DAPVVASGGVSSLDDLRALAELVP 213 (241)
T ss_pred HHHHHHHhcCCCEEEEEeecCCCC--------ccC-CCHHHHHHHHhhC-------CCCEEEeCCCCCHHHHHHHhhhcc
Confidence 456778899999998876532211 124 4556677776653 5999999999999999998765
Q ss_pred -CCCeeccChHHHH
Q psy10999 338 -GADEIGLSTAPLI 350 (447)
Q Consensus 338 -GAd~V~iGt~~L~ 350 (447)
|||+|++||+++.
T Consensus 214 ~GvdgV~igra~~~ 227 (241)
T PRK14024 214 LGVEGAIVGKALYA 227 (241)
T ss_pred CCccEEEEeHHHHc
Confidence 9999999999875
No 120
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=97.37 E-value=0.0051 Score=61.25 Aligned_cols=51 Identities=8% Similarity=-0.045 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 299 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
..+.+..+.++++ .+.||.+.+||+++.++.++...|||+|.+|++++-.+
T Consensus 188 ~~~~~~i~~ir~~---t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i 238 (263)
T CHL00200 188 KKLKKLIETIKKM---TNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQIL 238 (263)
T ss_pred HHHHHHHHHHHHh---cCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHH
Confidence 3345555555442 26899999999999999999999999999999997644
No 121
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=97.33 E-value=0.002 Score=66.99 Aligned_cols=104 Identities=13% Similarity=0.022 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhC-CCCceEEEEeee----c----cHH-----HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCCh
Q psy10999 232 LAELIYDLKCAN-PNARISVKLVSE----V----GVG-----VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW 297 (447)
Q Consensus 232 l~~~I~~Lr~~~-p~~pI~VKlv~~----~----Gi~-----~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~ 297 (447)
+.+.|+.+|+.. ++.||.||+... . |.. ..++.+.++|+|+|.|+.. + ...+. ..+.++
T Consensus 197 ~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~g--~-~~~~~----~~~~~~ 269 (361)
T cd04747 197 AAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCSTR--R-FWEPE----FEGSEL 269 (361)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecCC--C-ccCCC----cCccch
Confidence 467888999986 467999998741 0 111 2344567899999999762 1 11111 112221
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCC------------------CChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 298 ELGVAETHQVLALNNLRSRVVLQADGQI------------------RTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 298 ~~~L~ev~~~l~~~glr~~v~viadGGI------------------rtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
....++.+.+ ++||++.|+| +|+.++.+++.-| ||.|++||+++.
T Consensus 270 -~~~~~~k~~~-------~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~ia 333 (361)
T cd04747 270 -NLAGWTKKLT-------GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALLS 333 (361)
T ss_pred -hHHHHHHHHc-------CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHHh
Confidence 2223333321 5899999999 5999999999977 999999999875
No 122
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=97.30 E-value=0.00097 Score=65.66 Aligned_cols=76 Identities=20% Similarity=0.163 Sum_probs=59.0
Q ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
...|+...+.|+|.|++..-.+.. ..+.+....+.++.+.+ .+||+++|||++..|+.+++.+|
T Consensus 33 ~~~a~~~~~~G~~~l~v~Dl~~~~---------~~~~~n~~~i~~i~~~~-------~~pv~~~GGi~s~~d~~~~~~~G 96 (254)
T TIGR00735 33 VELAQRYDEEGADELVFLDITASS---------EGRTTMIDVVERTAETV-------FIPLTVGGGIKSIEDVDKLLRAG 96 (254)
T ss_pred HHHHHHHHHcCCCEEEEEcCCccc---------ccChhhHHHHHHHHHhc-------CCCEEEECCCCCHHHHHHHHHcC
Confidence 356777788999999887775431 01224555666666653 58999999999999999999999
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
|+.|.+||.++.
T Consensus 97 a~~vivgt~~~~ 108 (254)
T TIGR00735 97 ADKVSINTAAVK 108 (254)
T ss_pred CCEEEEChhHhh
Confidence 999999998865
No 123
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.25 E-value=0.001 Score=63.97 Aligned_cols=75 Identities=17% Similarity=0.169 Sum_probs=56.4
Q ss_pred HHHHHHHHCCCcEEEEecCC-CCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
+.++.+.+.|+|.|++-+-. .|+ ..| +....+.++.+.. .+|||+.|||+|..|+.+++.+|
T Consensus 150 e~~~~~~~~g~~~ii~~~~~~~g~---------~~G-~d~~~i~~l~~~~-------~ipvia~GGi~~~~di~~~~~~g 212 (233)
T PRK00748 150 DLAKRFEDAGVKAIIYTDISRDGT---------LSG-PNVEATRELAAAV-------PIPVIASGGVSSLDDIKALKGLG 212 (233)
T ss_pred HHHHHHHhcCCCEEEEeeecCcCC---------cCC-CCHHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHcC
Confidence 44566778899977665332 121 134 4556777776653 59999999999999999999999
Q ss_pred -CCeeccChHHHHH
Q psy10999 339 -ADEIGLSTAPLIT 351 (447)
Q Consensus 339 -Ad~V~iGt~~L~a 351 (447)
|++|.+|++++..
T Consensus 213 ~~~gv~vg~a~~~~ 226 (233)
T PRK00748 213 AVEGVIVGRALYEG 226 (233)
T ss_pred CccEEEEEHHHHcC
Confidence 9999999998753
No 124
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=97.25 E-value=0.0028 Score=62.88 Aligned_cols=99 Identities=19% Similarity=0.054 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+++.+++...+.. +..+.|= +-...++..+.++|+|+|-+.+.+= .... +......++.+.
T Consensus 147 ~~l~~li~~a~~l--Gl~~lve----vh~~~E~~~A~~~gadiIgin~rdl----------~~~~-~d~~~~~~l~~~-- 207 (260)
T PRK00278 147 EQLKELLDYAHSL--GLDVLVE----VHDEEELERALKLGAPLIGINNRNL----------KTFE-VDLETTERLAPL-- 207 (260)
T ss_pred HHHHHHHHHHHHc--CCeEEEE----eCCHHHHHHHHHcCCCEEEECCCCc----------cccc-CCHHHHHHHHHh--
Confidence 5677777777665 4444333 3334566788899999997743221 1122 223333444332
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
+.+.+++|+-|||.|+.|+.+++.+|||+|.+|++++-
T Consensus 208 ---~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~ 245 (260)
T PRK00278 208 ---IPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGESLMR 245 (260)
T ss_pred ---CCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence 22347899999999999999999999999999999874
No 125
>PRK05283 deoxyribose-phosphate aldolase; Provisional
Probab=97.21 E-value=0.0029 Score=62.73 Aligned_cols=99 Identities=19% Similarity=0.111 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHH-------HHHHHHHCCCcEEEEe-cCCCCCCCccccccccCCCChHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGV-------VASGVAKGKAEHIVIS-GHDGGTGASSWTGIKNAGLPWELGV 301 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-------~A~~a~~aGaD~I~Vs-G~~GGtg~a~~~~~~~~G~p~~~~L 301 (447)
+...+.|..+++.-.. ++.||++.|.+..+ ..+.+.++|||+|.-| |. +..| .+...+
T Consensus 115 ~~v~~ei~~v~~~~~~-~~~lKVIlEt~~L~~ee~i~~a~~~a~~aGADFVKTSTGf-~~~g------------At~edv 180 (257)
T PRK05283 115 QVGFELVKACKEACAA-NVLLKVIIETGELKDEALIRKASEIAIKAGADFIKTSTGK-VPVN------------ATLEAA 180 (257)
T ss_pred HHHHHHHHHHHHHhCC-CceEEEEEeccccCCHHHHHHHHHHHHHhCCCEEEcCCCC-CCCC------------CCHHHH
Confidence 4456778888876432 57899999887532 2234678999999775 43 2222 233445
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCee
Q psy10999 302 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEI 342 (447)
Q Consensus 302 ~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V 342 (447)
....+.+++.+.++++-|=++|||||..++...+.+|.+..
T Consensus 181 ~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~~~l 221 (257)
T PRK05283 181 RIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALADEIL 221 (257)
T ss_pred HHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHHHHh
Confidence 55556655555566799999999999999999999998754
No 126
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=97.20 E-value=0.0025 Score=60.16 Aligned_cols=78 Identities=15% Similarity=0.035 Sum_probs=54.1
Q ss_pred HHHHHHHHHCCCcEEEEecCCCCC-CCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGGT-GASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GGt-g~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
...+..+.+.|+|+|.++...-++ +. ..........+.++.+.+ +.+||+++||| +..++..++.+
T Consensus 114 ~~e~~~a~~~gaD~v~~~~~~~~~~~~------~~~~~~g~~~~~~~~~~~------~~~~v~a~GGI-~~~~i~~~~~~ 180 (212)
T PRK00043 114 LEEAAAALAAGADYVGVGPIFPTPTKK------DAKAPQGLEGLREIRAAV------GDIPIVAIGGI-TPENAPEVLEA 180 (212)
T ss_pred HHHHHHHhHcCCCEEEECCccCCCCCC------CCCCCCCHHHHHHHHHhc------CCCCEEEECCc-CHHHHHHHHHc
Confidence 446677889999999886432211 10 000111245566665543 24999999999 79999999999
Q ss_pred CCCeeccChHHH
Q psy10999 338 GADEIGLSTAPL 349 (447)
Q Consensus 338 GAd~V~iGt~~L 349 (447)
||++|.+|+.++
T Consensus 181 Ga~gv~~gs~i~ 192 (212)
T PRK00043 181 GADGVAVVSAIT 192 (212)
T ss_pred CCCEEEEeHHhh
Confidence 999999999864
No 127
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=97.19 E-value=0.0041 Score=64.63 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhCCCCceEEEEeee-------ccHH-H-----HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChH
Q psy10999 232 LAELIYDLKCANPNARISVKLVSE-------VGVG-V-----VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE 298 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~-------~Gi~-~-----~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~ 298 (447)
+.+.|+.+|+..+.-.|+||+.++ .|.. . .+..+.+.|+|+|.||... .. .....+ .
T Consensus 212 ~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~--~~-------~~~~~~-~ 281 (362)
T PRK10605 212 VLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSEPD--WA-------GGEPYS-D 281 (362)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecccc--cc-------CCcccc-H
Confidence 357788888887654799998652 1221 1 2445677899999998631 10 000111 1
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 299 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
..-.++.+.+ .+||++.|++ |+..+.++++-| ||.|+|||+++.
T Consensus 282 ~~~~~ik~~~-------~~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~ia 326 (362)
T PRK10605 282 AFREKVRARF-------HGVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYIA 326 (362)
T ss_pred HHHHHHHHHC-------CCCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhhh
Confidence 1112222221 4789999997 999999999999 999999999985
No 128
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=97.15 E-value=0.0016 Score=63.34 Aligned_cols=96 Identities=17% Similarity=0.119 Sum_probs=64.4
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCC-CCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGG-TGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GG-tg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
....++.+.+.|+|.|++-.-.+. +. ..+....+.++.+.+ ++||+++|||++..|+.+.+.
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~~~~----------~~~~~~~i~~i~~~~-------~~pv~~~GGI~s~~d~~~~l~ 91 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITASSEG----------RETMLDVVERVAEEV-------FIPLTVGGGIRSLEDARRLLR 91 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCccccc----------CcccHHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHH
Confidence 345677788999997766555432 21 123445555555542 589999999999999999999
Q ss_pred cCCCeeccChHHHHHhc--ccchhcccCCCCccccc
Q psy10999 337 LGADEIGLSTAPLITMG--CTMMRKCHLNTCPVGIA 370 (447)
Q Consensus 337 LGAd~V~iGt~~L~alg--c~~~~~c~~~~cP~gia 370 (447)
.||+.|.+|+.++.-.. ....+.|+.+.+...+-
T Consensus 92 ~G~~~v~ig~~~~~~p~~~~~i~~~~~~~~i~~~ld 127 (243)
T cd04731 92 AGADKVSINSAAVENPELIREIAKRFGSQCVVVSID 127 (243)
T ss_pred cCCceEEECchhhhChHHHHHHHHHcCCCCEEEEEE
Confidence 99999999998874321 11234454445555544
No 129
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=97.13 E-value=0.0053 Score=58.01 Aligned_cols=101 Identities=14% Similarity=0.051 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
.+.+.++..++. +.++++-+....-....+..+.+.|+|+|.+. . |..+ ..++.+....+.++.+.+
T Consensus 90 ~~~~~i~~~~~~--g~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~-p-g~~~-------~~~~~~~~~~i~~l~~~~-- 156 (206)
T TIGR03128 90 TIKGAVKAAKKH--GKEVQVDLINVKDKVKRAKELKELGADYIGVH-T-GLDE-------QAKGQNPFEDLQTILKLV-- 156 (206)
T ss_pred HHHHHHHHHHHc--CCEEEEEecCCCChHHHHHHHHHcCCCEEEEc-C-CcCc-------ccCCCCCHHHHHHHHHhc--
Confidence 345667777774 56776653321112355667788899999884 2 1111 112333444555555543
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
+.+++.++||| +..++...+..||+.|.+|+.++
T Consensus 157 ----~~~~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~ 190 (206)
T TIGR03128 157 ----KEARVAVAGGI-NLDTIPDVIKLGPDIVIVGGAIT 190 (206)
T ss_pred ----CCCcEEEECCc-CHHHHHHHHHcCCCEEEEeehhc
Confidence 24677789999 88889999999999999999864
No 130
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.12 E-value=0.0016 Score=63.88 Aligned_cols=74 Identities=22% Similarity=0.072 Sum_probs=56.4
Q ss_pred HHHHHHHHCCCcEEEEecCCC-CCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc-
Q psy10999 260 VVASGVAKGKAEHIVISGHDG-GTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL- 337 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~G-Gtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL- 337 (447)
..+..+.+.|+|.|++.+.+- |+. .|. ....+.++.+.. .+|||++|||++..|+.+++..
T Consensus 157 ~~~~~~~~~g~~~ii~~~i~~~g~~---------~g~-d~~~i~~~~~~~-------~ipvia~GGv~s~~d~~~~~~~~ 219 (253)
T PRK02083 157 EWAKEVEELGAGEILLTSMDRDGTK---------NGY-DLELTRAVSDAV-------NVPVIASGGAGNLEHFVEAFTEG 219 (253)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCCCC---------CCc-CHHHHHHHHhhC-------CCCEEEECCCCCHHHHHHHHHhC
Confidence 455677889999999877542 231 132 345666666542 5999999999999999999975
Q ss_pred CCCeeccChHHHH
Q psy10999 338 GADEIGLSTAPLI 350 (447)
Q Consensus 338 GAd~V~iGt~~L~ 350 (447)
||++|.+|+++..
T Consensus 220 G~~gvivg~al~~ 232 (253)
T PRK02083 220 GADAALAASIFHF 232 (253)
T ss_pred CccEEeEhHHHHc
Confidence 9999999998764
No 131
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=97.08 E-value=0.0011 Score=68.24 Aligned_cols=110 Identities=17% Similarity=0.098 Sum_probs=71.3
Q ss_pred HHHHHHHHHHhCC-CCceEEEEeee----ccHH--H---HHHHHHHCCCcEEEEecCCCCCCCc-cccccccCCCC---h
Q psy10999 232 LAELIYDLKCANP-NARISVKLVSE----VGVG--V---VASGVAKGKAEHIVISGHDGGTGAS-SWTGIKNAGLP---W 297 (447)
Q Consensus 232 l~~~I~~Lr~~~p-~~pI~VKlv~~----~Gi~--~---~A~~a~~aGaD~I~VsG~~GGtg~a-~~~~~~~~G~p---~ 297 (447)
+.+.|+.+|+..+ +.||+||+.+. -|.. + .+..+.++|+|++.+++...- +.. +.. ......+ .
T Consensus 202 ~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e~~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~ 279 (341)
T PF00724_consen 202 LLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEETIEIAKLLEELGVDFLDVSHGSYV-HWSEPRP-SPPFDFEPGYN 279 (341)
T ss_dssp HHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHHHHHHHHHHHHHHHTTEEEEEESEE-EEEBTSS-TTTTTTTTTTT
T ss_pred HHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHHHHHHHHHHHHHhhhhccccccccc-ccccccc-ccccccccchh
Confidence 3677888887643 56799998863 2222 1 245677889999987754222 221 111 1111111 1
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 298 ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 298 ~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
......+.+.. ++|||+.|||.++..+.++++-| ||.|+|||++|.
T Consensus 280 ~~~a~~ik~~~-------~~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~la 326 (341)
T PF00724_consen 280 LDLAEAIKKAV-------KIPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLLA 326 (341)
T ss_dssp HHHHHHHHHHH-------SSEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHHH
T ss_pred hhhhhhhhhhc-------CceEEEEeeecchhhhHHHHhcCCceEeeccHHHHh
Confidence 22233333332 59999999999999999999988 999999999985
No 132
>PLN02411 12-oxophytodienoate reductase
Probab=97.07 E-value=0.0058 Score=64.15 Aligned_cols=109 Identities=14% Similarity=0.087 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeec-------c--H---HHHHHHHHH----C--CCcEEEEecCCCCCCCccccccccC
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEV-------G--V---GVVASGVAK----G--KAEHIVISGHDGGTGASSWTGIKNA 293 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~-------G--i---~~~A~~a~~----a--GaD~I~VsG~~GGtg~a~~~~~~~~ 293 (447)
+.+.|+.+|+..+.-.|+||+-++. + . .+.+..+.+ . |+|+|.||...- ........ ...
T Consensus 218 ~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~-~~~~~~~~-~~~ 295 (391)
T PLN02411 218 LMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPLNLGLAVVERLNKLQLQNGSKLAYLHVTQPRY-TAYGQTES-GRH 295 (391)
T ss_pred HHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcchhhHHHHHHHHHHHHhhcCCCeEEEEecCCcc-cccCCCcc-ccc
Confidence 3678888988865336999987521 1 1 112333333 2 599999986311 00000000 001
Q ss_pred CCC--hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 294 GLP--WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 294 G~p--~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
+.+ ......++.+.+ ++|||+.|+| +..+..++++-| ||.|.|||+++.
T Consensus 296 ~~~~~~~~~a~~ik~~v-------~~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~ia 347 (391)
T PLN02411 296 GSEEEEAQLMRTLRRAY-------QGTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFIS 347 (391)
T ss_pred CCccchhHHHHHHHHHc-------CCCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHHh
Confidence 111 111223333332 4899999999 678888999999 999999999885
No 133
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=97.06 E-value=0.002 Score=62.97 Aligned_cols=74 Identities=24% Similarity=0.183 Sum_probs=53.4
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..|+...+.|+|-|.|---++-.+ ..+....+.++.+.+ .+||+++|||||..|+-+++.+||
T Consensus 36 ~~a~~~~~~g~~~l~ivDLd~~~g----------~~~n~~~i~~i~~~~-------~~pv~vgGGirs~edv~~~l~~Ga 98 (241)
T PRK14024 36 DAALAWQRDGAEWIHLVDLDAAFG----------RGSNRELLAEVVGKL-------DVKVELSGGIRDDESLEAALATGC 98 (241)
T ss_pred HHHHHHHHCCCCEEEEEeccccCC----------CCccHHHHHHHHHHc-------CCCEEEcCCCCCHHHHHHHHHCCC
Confidence 345566678888664433322111 113456677777653 589999999999999999999999
Q ss_pred CeeccChHHHH
Q psy10999 340 DEIGLSTAPLI 350 (447)
Q Consensus 340 d~V~iGt~~L~ 350 (447)
+.|.+|+..+.
T Consensus 99 ~kvviGs~~l~ 109 (241)
T PRK14024 99 ARVNIGTAALE 109 (241)
T ss_pred CEEEECchHhC
Confidence 99999998764
No 134
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=97.06 E-value=0.0039 Score=63.56 Aligned_cols=77 Identities=22% Similarity=0.220 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 257 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 257 Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
.-...|+.++++|+-.|--=+.-=|+| .|+.....|..+.+. .+|||++|+||.++.|+++|+.
T Consensus 206 ~d~~~a~~l~~~g~~avmPl~~pIGsg---------~gv~~p~~i~~~~e~-------~~vpVivdAGIg~~sda~~Ame 269 (326)
T PRK11840 206 DDPIAAKRLEDAGAVAVMPLGAPIGSG---------LGIQNPYTIRLIVEG-------ATVPVLVDAGVGTASDAAVAME 269 (326)
T ss_pred CCHHHHHHHHhcCCEEEeeccccccCC---------CCCCCHHHHHHHHHc-------CCCcEEEeCCCCCHHHHHHHHH
Confidence 455678889999994443212211122 234445666666654 2699999999999999999999
Q ss_pred cCCCeeccChHHH
Q psy10999 337 LGADEIGLSTAPL 349 (447)
Q Consensus 337 LGAd~V~iGt~~L 349 (447)
||||+|.+.|+..
T Consensus 270 lGadgVL~nSaIa 282 (326)
T PRK11840 270 LGCDGVLMNTAIA 282 (326)
T ss_pred cCCCEEEEcceec
Confidence 9999999999864
No 135
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=97.06 E-value=0.0024 Score=62.74 Aligned_cols=75 Identities=19% Similarity=0.154 Sum_probs=58.2
Q ss_pred HHHHHHHHHCCCcEEEEecCCCC-CCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGG-TGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GG-tg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
...|+.+.+.|+|.|.|-.-++- ++ ..+....+.++.+.+ ++||+++|||+|..|+.+++..
T Consensus 33 ~~~a~~~~~~G~~~i~i~dl~~~~~~----------~~~~~~~i~~i~~~~-------~ipv~~~GGi~s~~~~~~~l~~ 95 (253)
T PRK02083 33 VELAKRYNEEGADELVFLDITASSEG----------RDTMLDVVERVAEQV-------FIPLTVGGGIRSVEDARRLLRA 95 (253)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccc----------CcchHHHHHHHHHhC-------CCCEEeeCCCCCHHHHHHHHHc
Confidence 35677778899999998877542 11 123455666666543 5899999999999999999999
Q ss_pred CCCeeccChHHHH
Q psy10999 338 GADEIGLSTAPLI 350 (447)
Q Consensus 338 GAd~V~iGt~~L~ 350 (447)
||+.|.+||.++.
T Consensus 96 Ga~~Viigt~~l~ 108 (253)
T PRK02083 96 GADKVSINSAAVA 108 (253)
T ss_pred CCCEEEEChhHhh
Confidence 9999999998764
No 136
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.04 E-value=0.0061 Score=61.47 Aligned_cols=95 Identities=19% Similarity=0.141 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.+.+..+|+..| ...|+..|+.....+..+.++|||+|.+++. + ..-|.+++..+++.
T Consensus 182 i~~av~~~r~~~~---~~~~I~VEv~tleea~eA~~~GaD~I~LDn~---------------~---~e~l~~av~~~~~~ 240 (288)
T PRK07428 182 IGEAITRIRQRIP---YPLTIEVETETLEQVQEALEYGADIIMLDNM---------------P---VDLMQQAVQLIRQQ 240 (288)
T ss_pred HHHHHHHHHHhCC---CCCEEEEECCCHHHHHHHHHcCCCEEEECCC---------------C---HHHHHHHHHHHHhc
Confidence 5677888888754 2344445566778888999999999999843 1 14566666655432
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
+.++++.++||| |...+..-.+.|+|.+.+|++..-
T Consensus 241 --~~~i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 241 --NPRVKIEASGNI-TLETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred --CCCeEEEEECCC-CHHHHHHHHHcCCCEEEEchhhhC
Confidence 357999999999 799999999999999999997653
No 137
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=97.01 E-value=0.003 Score=60.77 Aligned_cols=76 Identities=16% Similarity=0.074 Sum_probs=56.7
Q ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
...|+...+.|+|.+.|..-+|-- . -..+....+.++.+.. .+||+++|||++-.|+.+++.+|
T Consensus 33 ~~~a~~~~~~g~~~i~v~dld~~~--------~-g~~~~~~~i~~i~~~~-------~~pv~~~GGI~~~ed~~~~~~~G 96 (233)
T PRK00748 33 VAQAKAWEDQGAKWLHLVDLDGAK--------A-GKPVNLELIEAIVKAV-------DIPVQVGGGIRSLETVEALLDAG 96 (233)
T ss_pred HHHHHHHHHcCCCEEEEEeCCccc--------c-CCcccHHHHHHHHHHC-------CCCEEEcCCcCCHHHHHHHHHcC
Confidence 345667778899988776654320 0 0124455666666542 58999999999999999999999
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
|+.|.+|+.++-
T Consensus 97 a~~vilg~~~l~ 108 (233)
T PRK00748 97 VSRVIIGTAAVK 108 (233)
T ss_pred CCEEEECchHHh
Confidence 999999998875
No 138
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=96.99 E-value=0.018 Score=57.14 Aligned_cols=107 Identities=19% Similarity=0.096 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
++..+.+..+++. +...+ =+++..--....+.+.+...++|-+-+.-|-||... .........+.++.+.
T Consensus 129 ee~~~~~~~~~~~--gl~~I-~lvap~t~~eri~~i~~~s~gfIY~vs~~GvTG~~~-----~~~~~~~~~i~~vk~~-- 198 (258)
T PRK13111 129 EEAEELRAAAKKH--GLDLI-FLVAPTTTDERLKKIASHASGFVYYVSRAGVTGARS-----ADAADLAELVARLKAH-- 198 (258)
T ss_pred HHHHHHHHHHHHc--CCcEE-EEeCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCccc-----CCCccHHHHHHHHHhc--
Confidence 4555566666664 33333 223322223445566677778886544445565421 1122333445555543
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
.++||++.+||+++.|+.+++.. ||+|.+|++++-.+
T Consensus 199 -----~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~ 235 (258)
T PRK13111 199 -----TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKII 235 (258)
T ss_pred -----CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHH
Confidence 16999999999999999999986 99999999998655
No 139
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=96.98 E-value=0.0076 Score=62.82 Aligned_cols=98 Identities=18% Similarity=0.096 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeee-ccHHHHHHHHHHCCCcEEEEecCCCCCCCcccccccc-CC-CChHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSE-VGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKN-AG-LPWELGVAET 304 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~-~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~-~G-~p~~~~L~ev 304 (447)
+++-+.+.|.++|+. . +.||+-.. ......+..+.++|+|+|+|.|.-= ++.+ .| -.|. -|.+.
T Consensus 117 ~p~l~~~ii~~vr~a--~--VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~--------~q~~~sg~~~p~-~l~~~ 183 (369)
T TIGR01304 117 KPELLGERIAEVRDS--G--VITAVRVSPQNAREIAPIVVKAGADLLVIQGTLV--------SAEHVSTSGEPL-NLKEF 183 (369)
T ss_pred ChHHHHHHHHHHHhc--c--eEEEEecCCcCHHHHHHHHHHCCCCEEEEeccch--------hhhccCCCCCHH-HHHHH
Confidence 344567788999885 2 56664432 2345677889999999999986420 0111 01 1233 24444
Q ss_pred HHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 305 HQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 305 ~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
.+.+ ++|||+ |++.|..|+.+++..|||+|.+|+
T Consensus 184 i~~~-------~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~ 217 (369)
T TIGR01304 184 IGEL-------DVPVIA-GGVNDYTTALHLMRTGAAGVIVGP 217 (369)
T ss_pred HHHC-------CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 4332 589998 999999999999999999998665
No 140
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=96.95 E-value=0.0055 Score=63.84 Aligned_cols=98 Identities=18% Similarity=0.071 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCC--ChHHHHHHHHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGL--PWELGVAETHQ 306 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~--p~~~~L~ev~~ 306 (447)
++.+.+.|+.+|+. ++++.|++ ........++.+.++|+|+|+|+|..-- +.|.+. -+.. +.+..+
T Consensus 117 p~l~~~iv~~~~~~--~V~v~vr~-~~~~~~e~a~~l~eaGvd~I~vhgrt~~--------~~h~~~~~~~~~-i~~~ik 184 (368)
T PRK08649 117 PELITERIAEIRDA--GVIVAVSL-SPQRAQELAPTVVEAGVDLFVIQGTVVS--------AEHVSKEGEPLN-LKEFIY 184 (368)
T ss_pred HHHHHHHHHHHHhC--eEEEEEec-CCcCHHHHHHHHHHCCCCEEEEeccchh--------hhccCCcCCHHH-HHHHHH
Confidence 45567888999884 44554443 1123456778889999999999764110 011111 1333 333322
Q ss_pred HHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 307 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 307 ~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
. . ++|||+ |++.|..++.+++..|||+|.+|+
T Consensus 185 ~---~----~ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 185 E---L----DVPVIV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred H---C----CCCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 2 1 589999 999999999999999999998886
No 141
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=96.94 E-value=0.011 Score=57.93 Aligned_cols=107 Identities=14% Similarity=0.041 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
|+..+.+..+|+.. ...++=+.+.. -....+.+.+...|+|.+-+..|+||.. ..+.......+.++.+.
T Consensus 116 ee~~~~~~~~~~~g--~~~i~~i~P~T-~~~~i~~i~~~~~~~vy~~s~~g~tG~~-----~~~~~~~~~~i~~lr~~-- 185 (242)
T cd04724 116 EEAEEFREAAKEYG--LDLIFLVAPTT-PDERIKKIAELASGFIYYVSRTGVTGAR-----TELPDDLKELIKRIRKY-- 185 (242)
T ss_pred HHHHHHHHHHHHcC--CcEEEEeCCCC-CHHHHHHHHhhCCCCEEEEeCCCCCCCc-----cCCChhHHHHHHHHHhc--
Confidence 55666777887763 33322221211 1233445566567777766656666542 11112233344444432
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
.++||+++|||++..++.++... ||+|.+|+++.--+
T Consensus 186 -----~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~ 222 (242)
T cd04724 186 -----TDLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKII 222 (242)
T ss_pred -----CCCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHH
Confidence 26999999999999999999999 99999999887544
No 142
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=96.92 E-value=0.013 Score=63.50 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=49.0
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..+..+.++|+|+|.|+-..|.+-. ....+.++.+.. .+++|++ |.+.|..++..++.+||
T Consensus 244 ~~~~~l~~ag~d~i~id~a~G~s~~------------~~~~i~~ik~~~------~~~~v~a-G~V~t~~~a~~~~~aGa 304 (495)
T PTZ00314 244 ERAAALIEAGVDVLVVDSSQGNSIY------------QIDMIKKLKSNY------PHVDIIA-GNVVTADQAKNLIDAGA 304 (495)
T ss_pred HHHHHHHHCCCCEEEEecCCCCchH------------HHHHHHHHHhhC------CCceEEE-CCcCCHHHHHHHHHcCC
Confidence 4567788999999999987654311 123455554431 2577776 99999999999999999
Q ss_pred CeeccC
Q psy10999 340 DEIGLS 345 (447)
Q Consensus 340 d~V~iG 345 (447)
|++-+|
T Consensus 305 d~I~vg 310 (495)
T PTZ00314 305 DGLRIG 310 (495)
T ss_pred CEEEEC
Confidence 998654
No 143
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=96.91 E-value=0.0096 Score=55.86 Aligned_cols=99 Identities=16% Similarity=0.115 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEe-cCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVIS-GHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~Vs-G~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
...+.++.+|+. +.++++=++ ......++..+.+.|+|+|.+. +..+++.. .......+.++.+.
T Consensus 91 ~~~~~i~~~~~~--g~~~~v~~~-~~~t~~e~~~~~~~~~d~v~~~~~~~~~~~~---------~~~~~~~i~~~~~~-- 156 (202)
T cd04726 91 TIKKAVKAAKKY--GKEVQVDLI-GVEDPEKRAKLLKLGVDIVILHRGIDAQAAG---------GWWPEDDLKKVKKL-- 156 (202)
T ss_pred HHHHHHHHHHHc--CCeEEEEEe-CCCCHHHHHHHHHCCCCEEEEcCcccccccC---------CCCCHHHHHHHHhh--
Confidence 345567777764 445543211 2234455556788899999883 33232210 12334555555443
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
.++|++++|||+ ..++..++..|||++.+|+++.
T Consensus 157 -----~~~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~ 190 (202)
T cd04726 157 -----LGVKVAVAGGIT-PDTLPEFKKAGADIVIVGRAIT 190 (202)
T ss_pred -----cCCCEEEECCcC-HHHHHHHHhcCCCEEEEeehhc
Confidence 269999999995 9999999999999999999864
No 144
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.90 E-value=0.011 Score=57.70 Aligned_cols=74 Identities=16% Similarity=0.097 Sum_probs=54.2
Q ss_pred HHHHHHHHCCCcEEEEecCC-CCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
+.++.+.+.|+..|++.--+ -||. .| |....+.++.+.. .+||+++||+++..|+.+++.+|
T Consensus 152 ~~~~~~~~~g~~~ii~tdi~~dGt~---------~G-~~~~li~~l~~~~-------~ipvi~~GGi~s~edi~~l~~~G 214 (234)
T PRK13587 152 SFVRQLSDIPLGGIIYTDIAKDGKM---------SG-PNFELTGQLVKAT-------TIPVIASGGIRHQQDIQRLASLN 214 (234)
T ss_pred HHHHHHHHcCCCEEEEecccCcCCC---------Cc-cCHHHHHHHHHhC-------CCCEEEeCCCCCHHHHHHHHHcC
Confidence 44566778898877664332 2231 12 4455666665542 59999999999999999999999
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
+++|.+|+++.-
T Consensus 215 ~~~vivG~a~~~ 226 (234)
T PRK13587 215 VHAAIIGKAAHQ 226 (234)
T ss_pred CCEEEEhHHHHh
Confidence 999999998753
No 145
>PRK04302 triosephosphate isomerase; Provisional
Probab=96.90 E-value=0.012 Score=56.88 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCC-CCCCCccccccccCCCChHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
++..+.+...++. +..+++ + ++-...+..+.+.+.|+|-+...+ -||+.. . ..++...+.++++.+
T Consensus 101 ~e~~~~v~~a~~~--Gl~~I~--~--v~~~~~~~~~~~~~~~~I~~~p~~~igt~~~----~---~~~~~~~i~~~~~~i 167 (223)
T PRK04302 101 ADIEAVVERAKKL--GLESVV--C--VNNPETSAAAAALGPDYVAVEPPELIGTGIP----V---SKAKPEVVEDAVEAV 167 (223)
T ss_pred HHHHHHHHHHHHC--CCeEEE--E--cCCHHHHHHHhcCCCCEEEEeCccccccCCC----C---CcCCHHHHHHHHHHH
Confidence 4456667777664 433332 2 244455666788899999765421 122211 0 012224466666666
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
++. ..++||++.|||+++.++..++..|||+|.+|++++-
T Consensus 168 r~~--~~~~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~ 207 (223)
T PRK04302 168 KKV--NPDVKVLCGAGISTGEDVKAALELGADGVLLASGVVK 207 (223)
T ss_pred Hhc--cCCCEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhC
Confidence 542 2369999999999999999999999999999999874
No 146
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=96.84 E-value=0.0053 Score=59.07 Aligned_cols=75 Identities=20% Similarity=0.157 Sum_probs=55.6
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..|+...+.|+|.+.|..-.+.- ...+ .....+.++.+.. .+||++.|||++..|+.+++..||
T Consensus 33 ~~a~~~~~~g~d~l~v~dl~~~~--------~~~~-~~~~~i~~i~~~~-------~~pv~~~GgI~~~e~~~~~~~~Ga 96 (234)
T cd04732 33 EVAKKWEEAGAKWLHVVDLDGAK--------GGEP-VNLELIEEIVKAV-------GIPVQVGGGIRSLEDIERLLDLGV 96 (234)
T ss_pred HHHHHHHHcCCCEEEEECCCccc--------cCCC-CCHHHHHHHHHhc-------CCCEEEeCCcCCHHHHHHHHHcCC
Confidence 45667778999999988554321 0011 2344556655542 589999999999999999999999
Q ss_pred CeeccChHHHH
Q psy10999 340 DEIGLSTAPLI 350 (447)
Q Consensus 340 d~V~iGt~~L~ 350 (447)
|.|.+|+..+.
T Consensus 97 d~vvigs~~l~ 107 (234)
T cd04732 97 SRVIIGTAAVK 107 (234)
T ss_pred CEEEECchHHh
Confidence 99999998763
No 147
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=96.82 E-value=0.0066 Score=55.90 Aligned_cols=77 Identities=16% Similarity=-0.045 Sum_probs=52.4
Q ss_pred HHHHHHHHHCCCcEEEEecCC-CCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 259 GVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
..++..+.+.|+|+|.++... +.++.. .+.......+.++.+. .++||+++||| +..++...+.+
T Consensus 105 ~~~~~~~~~~g~d~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-------~~~pv~a~GGi-~~~~i~~~~~~ 170 (196)
T cd00564 105 LEEALRAEELGADYVGFGPVFPTPTKPG------AGPPLGLELLREIAEL-------VEIPVVAIGGI-TPENAAEVLAA 170 (196)
T ss_pred HHHHHHHhhcCCCEEEECCccCCCCCCC------CCCCCCHHHHHHHHHh-------CCCCEEEECCC-CHHHHHHHHHc
Confidence 356677888999999986432 211110 0011223444554433 25999999999 57899999999
Q ss_pred CCCeeccChHHH
Q psy10999 338 GADEIGLSTAPL 349 (447)
Q Consensus 338 GAd~V~iGt~~L 349 (447)
||++|.+|+.++
T Consensus 171 Ga~~i~~g~~i~ 182 (196)
T cd00564 171 GADGVAVISAIT 182 (196)
T ss_pred CCCEEEEehHhh
Confidence 999999999875
No 148
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=96.82 E-value=0.012 Score=57.32 Aligned_cols=73 Identities=22% Similarity=0.191 Sum_probs=52.6
Q ss_pred HHHHHHHHCCCcEEEEecCC-CCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
..++...+. ++.+++..-+ -||. .| |....+.++.+.. .+||+++|||++..|+.+++.+|
T Consensus 150 ~~~~~~~~~-~~~li~~di~~~G~~---------~g-~~~~~~~~i~~~~-------~ipvi~~GGi~s~edi~~l~~~G 211 (233)
T cd04723 150 ELLRRLAKW-PEELIVLDIDRVGSG---------QG-PDLELLERLAARA-------DIPVIAAGGVRSVEDLELLKKLG 211 (233)
T ss_pred HHHHHHHHh-CCeEEEEEcCccccC---------CC-cCHHHHHHHHHhc-------CCCEEEeCCCCCHHHHHHHHHcC
Confidence 445566677 8866554332 2221 12 4456666666542 59999999999999999999999
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
|++|.+|+++..
T Consensus 212 ~~~vivGsal~~ 223 (233)
T cd04723 212 ASGALVASALHD 223 (233)
T ss_pred CCEEEEehHHHc
Confidence 999999998764
No 149
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=96.81 E-value=0.052 Score=54.09 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=39.9
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhc
Q psy10999 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMG 353 (447)
Q Consensus 301 L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~alg 353 (447)
+.+..+.+++. .++||.+-=||+++.++.++... ||+|.+|+++.-.++
T Consensus 193 ~~~~v~~vr~~---~~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~~i~ 241 (265)
T COG0159 193 VKELVKRVRKY---TDVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVKIIE 241 (265)
T ss_pred HHHHHHHHHHh---cCCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHHHHH
Confidence 45555555443 27999999999999999999999 999999999987653
No 150
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=96.73 E-value=0.016 Score=61.28 Aligned_cols=99 Identities=12% Similarity=0.060 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.+.++..|+. +.++++-+++.......++.+.+.|+|+|.+. . |.++.. .+......|.++.+.+
T Consensus 96 ~~~~i~~a~~~--G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~~-p-g~~~~~-------~~~~~~~~l~~l~~~~--- 161 (430)
T PRK07028 96 IEDAVRAARKY--GVRLMADLINVPDPVKRAVELEELGVDYINVH-V-GIDQQM-------LGKDPLELLKEVSEEV--- 161 (430)
T ss_pred HHHHHHHHHHc--CCEEEEEecCCCCHHHHHHHHHhcCCCEEEEE-e-ccchhh-------cCCChHHHHHHHHhhC---
Confidence 44567777764 55665543331112234566788999999763 3 222111 1112234455544331
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
++||+++||| +...+..++..||+.+.+|+.+.
T Consensus 162 ----~iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~ 194 (430)
T PRK07028 162 ----SIPIAVAGGL-DAETAAKAVAAGADIVIVGGNII 194 (430)
T ss_pred ----CCcEEEECCC-CHHHHHHHHHcCCCEEEEChHHc
Confidence 4999999999 68899999999999999999865
No 151
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=96.67 E-value=0.013 Score=54.61 Aligned_cols=94 Identities=24% Similarity=0.225 Sum_probs=69.7
Q ss_pred HHHHHHHHHHhCCCCc-eEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 232 LAELIYDLKCANPNAR-ISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~p-I~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
+.+.++.+|+..|..+ |.| |+.....+..+.++|+|+|.+++. ...-+.++++.+++
T Consensus 66 i~~av~~~~~~~~~~~~I~V----Ev~~~ee~~ea~~~g~d~I~lD~~------------------~~~~~~~~v~~l~~ 123 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEV----EVENLEEAEEALEAGADIIMLDNM------------------SPEDLKEAVEELRE 123 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEE----EESSHHHHHHHHHTT-SEEEEES-------------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCceEEE----EcCCHHHHHHHHHhCCCEEEecCc------------------CHHHHHHHHHHHhh
Confidence 5677889999887754 444 444567788899999999999986 11457777776665
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
.+ .++.|.++||| |...+..-...|+|.+.+|.....
T Consensus 124 ~~--~~v~ie~SGGI-~~~ni~~ya~~gvD~isvg~~~~~ 160 (169)
T PF01729_consen 124 LN--PRVKIEASGGI-TLENIAEYAKTGVDVISVGSLTHS 160 (169)
T ss_dssp HT--TTSEEEEESSS-STTTHHHHHHTT-SEEEECHHHHS
T ss_pred cC--CcEEEEEECCC-CHHHHHHHHhcCCCEEEcChhhcC
Confidence 44 35999999999 677888888999999999986543
No 152
>PLN02591 tryptophan synthase
Probab=96.66 E-value=0.051 Score=53.82 Aligned_cols=108 Identities=17% Similarity=0.099 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
|+..+.+..+++. +...+. +++..--....+.+++..-++|-+-+.-|-||.. .+.| ..+.+..+.++
T Consensus 118 ee~~~~~~~~~~~--gl~~I~-lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~-------~~~~--~~~~~~i~~vk 185 (250)
T PLN02591 118 EETEALRAEAAKN--GIELVL-LTTPTTPTERMKAIAEASEGFVYLVSSTGVTGAR-------ASVS--GRVESLLQELK 185 (250)
T ss_pred HHHHHHHHHHHHc--CCeEEE-EeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCC-------cCCc--hhHHHHHHHHH
Confidence 4555556666654 433333 3322211233455556666777654555666542 1223 22344344444
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
+. .++||++--||+|+.|+.+++.+|||+|.+|++++--+
T Consensus 186 ~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i 225 (250)
T PLN02591 186 EV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKAL 225 (250)
T ss_pred hc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhh
Confidence 32 37999999999999999999999999999999987544
No 153
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.61 E-value=0.017 Score=58.26 Aligned_cols=94 Identities=17% Similarity=0.141 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
++.+.|+++|+..|..+| ..|+.....+..+.++|+|+|.+++.. .+-+.+++..+++
T Consensus 185 ~i~~ai~~~r~~~~~~kI----eVEv~tl~ea~eal~~gaDiI~LDnm~------------------~e~vk~av~~~~~ 242 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPC----EVEVDSLEQLDEVLAEGAELVLLDNFP------------------VWQTQEAVQRRDA 242 (289)
T ss_pred cHHHHHHHHHHhCCCCCE----EEEcCCHHHHHHHHHcCCCEEEeCCCC------------------HHHHHHHHHHHhc
Confidence 466778899887665454 445566778889999999999999651 1345666655443
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
. +.++.+.++||| |...+..-..+|+|.+.+|....
T Consensus 243 ~--~~~v~ieaSGGI-~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 243 R--APTVLLESSGGL-TLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred c--CCCEEEEEECCC-CHHHHHHHHhcCCCEEEeChhhc
Confidence 2 457999999999 78889899999999999998654
No 154
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=96.59 E-value=0.0088 Score=57.95 Aligned_cols=48 Identities=17% Similarity=0.070 Sum_probs=40.2
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 296 PWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 296 p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
|....+.++.+.. .+|||++|||++..|+.++..+||++|.+|+++..
T Consensus 171 ~d~eli~~i~~~~-------~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 171 PNLELLTKTLELS-------EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred CCHHHHHHHHhhC-------CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 4456667766643 59999999999999999999999999999998753
No 155
>PLN02334 ribulose-phosphate 3-epimerase
Probab=96.56 E-value=0.03 Score=54.25 Aligned_cols=102 Identities=19% Similarity=0.160 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCC-CcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aG-aD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
....++.++.. +..+++=+-... ....++...+.| +|+|.+-....|+.. ..+......-+.++.+.
T Consensus 104 ~~~~~~~i~~~--g~~iGls~~~~t-~~~~~~~~~~~~~~Dyi~~~~v~pg~~~------~~~~~~~~~~i~~~~~~--- 171 (229)
T PLN02334 104 LHRLIQQIKSA--GMKAGVVLNPGT-PVEAVEPVVEKGLVDMVLVMSVEPGFGG------QSFIPSMMDKVRALRKK--- 171 (229)
T ss_pred HHHHHHHHHHC--CCeEEEEECCCC-CHHHHHHHHhccCCCEEEEEEEecCCCc------cccCHHHHHHHHHHHHh---
Confidence 34566777664 444444422111 122333444453 999966433332211 11111123333333332
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
...+||.++||| |..++...+..|||.+.+|+++.
T Consensus 172 ---~~~~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~ 206 (229)
T PLN02334 172 ---YPELDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVF 206 (229)
T ss_pred ---CCCCcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHh
Confidence 235799999999 79999999999999999999854
No 156
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=96.55 E-value=0.018 Score=55.73 Aligned_cols=65 Identities=17% Similarity=-0.002 Sum_probs=48.1
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCC--CChHH----HHHHH
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQI--RTGFD----VVVAA 335 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGI--rtg~D----v~kAl 335 (447)
++.+.++|||+|-++.. + ....+.++.+.+ .+||+++||+ .|..| +..++
T Consensus 149 ~~~a~~~GaD~Ik~~~~-~----------------~~~~~~~i~~~~-------~~pvv~~GG~~~~~~~~~l~~~~~~~ 204 (235)
T cd00958 149 ARIGAELGADIVKTKYT-G----------------DAESFKEVVEGC-------PVPVVIAGGPKKDSEEEFLKMVYDAM 204 (235)
T ss_pred HHHHHHHCCCEEEecCC-C----------------CHHHHHHHHhcC-------CCCEEEeCCCCCCCHHHHHHHHHHHH
Confidence 45577899999998532 1 124455555432 5889999997 66766 78889
Q ss_pred HcCCCeeccChHHHH
Q psy10999 336 LLGADEIGLSTAPLI 350 (447)
Q Consensus 336 aLGAd~V~iGt~~L~ 350 (447)
.+||++|.+||.++.
T Consensus 205 ~~Ga~gv~vg~~i~~ 219 (235)
T cd00958 205 EAGAAGVAVGRNIFQ 219 (235)
T ss_pred HcCCcEEEechhhhc
Confidence 999999999998873
No 157
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=96.55 E-value=0.0067 Score=58.98 Aligned_cols=77 Identities=26% Similarity=0.212 Sum_probs=58.4
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
-...|+++.++|+..|-==|.-=|+| .|+-+...|..+.+.. +||||+|-||.+++|.+.|+.|
T Consensus 140 D~v~arrLee~GcaavMPl~aPIGSg---------~G~~n~~~l~iiie~a-------~VPviVDAGiG~pSdAa~aMEl 203 (262)
T COG2022 140 DPVLARRLEEAGCAAVMPLGAPIGSG---------LGLQNPYNLEIIIEEA-------DVPVIVDAGIGTPSDAAQAMEL 203 (262)
T ss_pred CHHHHHHHHhcCceEeccccccccCC---------cCcCCHHHHHHHHHhC-------CCCEEEeCCCCChhHHHHHHhc
Confidence 35678999999999885433322232 3555556666665542 6999999999999999999999
Q ss_pred CCCeeccChHHHH
Q psy10999 338 GADEIGLSTAPLI 350 (447)
Q Consensus 338 GAd~V~iGt~~L~ 350 (447)
|+|+|.+-|+.-.
T Consensus 204 G~DaVL~NTAiA~ 216 (262)
T COG2022 204 GADAVLLNTAIAR 216 (262)
T ss_pred ccceeehhhHhhc
Confidence 9999999997643
No 158
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.51 E-value=0.02 Score=57.14 Aligned_cols=89 Identities=27% Similarity=0.294 Sum_probs=64.9
Q ss_pred HHHHHHHHhCC-CCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 234 ELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 234 ~~I~~Lr~~~p-~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
..+.++|+..| +.+|.| ++.....+..+.++|+|+|.+++.. | ..+.++.+.++..
T Consensus 169 ~~v~~~r~~~~~~~~I~v----ev~t~eea~~A~~~gaD~I~ld~~~----------------~--e~l~~~v~~i~~~- 225 (269)
T cd01568 169 EAVKRARAAAPFEKKIEV----EVETLEEAEEALEAGADIIMLDNMS----------------P--EELKEAVKLLKGL- 225 (269)
T ss_pred HHHHHHHHhCCCCCeEEE----ecCCHHHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHHhccC-
Confidence 46888888876 334433 4445677888899999999996531 1 4456666654321
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
.++||.++||| |...+...+..|||++.+|..+
T Consensus 226 --~~i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~ 258 (269)
T cd01568 226 --PRVLLEASGGI-TLENIRAYAETGVDVISTGALT 258 (269)
T ss_pred --CCeEEEEECCC-CHHHHHHHHHcCCCEEEEcHHH
Confidence 37999999999 5888999999999999998654
No 159
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=96.50 E-value=0.014 Score=56.69 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=52.8
Q ss_pred HHHHHHHHHHCCCcEEEEecCC-CCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 258 VGVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
....++.+.+.|+..|++..-+ -||. .| |....+.++.+.. ++|||++|||++..|+.++..
T Consensus 149 ~~~~~~~~~~~g~~~ii~tdi~~dGt~---------~G-~d~~~~~~l~~~~-------~~~viasGGv~~~~Dl~~l~~ 211 (229)
T PF00977_consen 149 LEEFAKRLEELGAGEIILTDIDRDGTM---------QG-PDLELLKQLAEAV-------NIPVIASGGVRSLEDLRELKK 211 (229)
T ss_dssp HHHHHHHHHHTT-SEEEEEETTTTTTS---------SS---HHHHHHHHHHH-------SSEEEEESS--SHHHHHHHHH
T ss_pred HHHHHHHHHhcCCcEEEEeeccccCCc---------CC-CCHHHHHHHHHHc-------CCCEEEecCCCCHHHHHHHHH
Confidence 3455677788888888775432 1221 23 3446677776654 699999999999999999999
Q ss_pred cCCCeeccChHHH
Q psy10999 337 LGADEIGLSTAPL 349 (447)
Q Consensus 337 LGAd~V~iGt~~L 349 (447)
.|+++|.+|+++.
T Consensus 212 ~G~~gvivg~al~ 224 (229)
T PF00977_consen 212 AGIDGVIVGSALH 224 (229)
T ss_dssp TTECEEEESHHHH
T ss_pred CCCcEEEEehHhh
Confidence 9999999999874
No 160
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.50 E-value=0.017 Score=57.99 Aligned_cols=89 Identities=19% Similarity=0.155 Sum_probs=65.2
Q ss_pred HHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 233 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 233 ~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
...+...|+..|+.+|.| ++.....+..+.++|||+|.+++. ..+.+.++.+.+
T Consensus 177 ~~av~~~r~~~~~~~I~V----Ev~tleea~eA~~~gaD~I~LD~~------------------~~e~l~~~v~~~---- 230 (277)
T PRK05742 177 AQAVAAAHRIAPGKPVEV----EVESLDELRQALAAGADIVMLDEL------------------SLDDMREAVRLT---- 230 (277)
T ss_pred HHHHHHHHHhCCCCeEEE----EeCCHHHHHHHHHcCCCEEEECCC------------------CHHHHHHHHHHh----
Confidence 345777887655544433 445567788899999999977532 123466666543
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
+.++||.++||| |...+......|+|.+.+|....
T Consensus 231 -~~~i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~ 265 (277)
T PRK05742 231 -AGRAKLEASGGI-NESTLRVIAETGVDYISIGAMTK 265 (277)
T ss_pred -CCCCcEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 347999999999 79999999999999999998653
No 161
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=96.50 E-value=0.026 Score=55.40 Aligned_cols=99 Identities=21% Similarity=0.192 Sum_probs=69.5
Q ss_pred HHHHHHHHhCCCCceEEEEee--------------eccHHHHHHHHHHCCCcEEEEecCC-CCCCCccccccccCCCChH
Q psy10999 234 ELIYDLKCANPNARISVKLVS--------------EVGVGVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWE 298 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~--------------~~Gi~~~A~~a~~aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~ 298 (447)
+++.++.+.+|+ +|.|=+=+ ++...+.++...+.|+..|++.--+ =|| ..-|..
T Consensus 112 ~~v~~~~~~~g~-rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGt----------l~G~n~ 180 (241)
T COG0106 112 DLVKELCEEYGD-RIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGT----------LSGPNV 180 (241)
T ss_pred HHHHHHHHHcCC-cEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccc----------cCCCCH
Confidence 456666667764 55553322 1223346677888899888765431 112 112566
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc-CCCeeccChHHHH
Q psy10999 299 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-GADEIGLSTAPLI 350 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL-GAd~V~iGt~~L~ 350 (447)
..+.++.+.. ++|+|+||||++-.|+-.+..+ |.+++.+|++++.
T Consensus 181 ~l~~~l~~~~-------~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 181 DLVKELAEAV-------DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYE 226 (241)
T ss_pred HHHHHHHHHh-------CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhc
Confidence 7778877764 6999999999999999999999 9999999999764
No 162
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=96.47 E-value=0.017 Score=57.63 Aligned_cols=89 Identities=24% Similarity=0.268 Sum_probs=66.0
Q ss_pred HHHHHHHHHhCC-CCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 233 AELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 233 ~~~I~~Lr~~~p-~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
...+..+|+..| +.+|. .++.....+..+.++|+|+|-+++.. .+.|.++.+.+
T Consensus 169 ~~~v~~~r~~~~~~~~Ig----vev~s~eea~~A~~~gaDyI~ld~~~------------------~e~l~~~~~~~--- 223 (268)
T cd01572 169 TEAVRRARAAAPFTLKIE----VEVETLEQLKEALEAGADIIMLDNMS------------------PEELREAVALL--- 223 (268)
T ss_pred HHHHHHHHHhCCCCCeEE----EEECCHHHHHHHHHcCCCEEEECCcC------------------HHHHHHHHHHc---
Confidence 345788888765 33333 34445577888899999999996531 25566666653
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
+.++|+.++||| |...+......|+|.+.+|+...
T Consensus 224 --~~~ipi~AiGGI-~~~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 224 --KGRVLLEASGGI-TLENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred --CCCCcEEEECCC-CHHHHHHHHHcCCCEEEEEeeec
Confidence 236999999999 79999999999999999998654
No 163
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=96.43 E-value=0.06 Score=49.51 Aligned_cols=100 Identities=29% Similarity=0.227 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHhC-CCCceEEEEeeec--cHHHH---HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHH
Q psy10999 229 IEDLAELIYDLKCAN-PNARISVKLVSEV--GVGVV---ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 302 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~-p~~pI~VKlv~~~--Gi~~~---A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ 302 (447)
.+.+.+.++++++.. .+.|+.++..+.. ..... ++.+.+.|+|+|..+..... +......+.
T Consensus 96 ~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~~~~------------~~~~~~~~~ 163 (201)
T cd00945 96 WEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTGFGG------------GGATVEDVK 163 (201)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCCCCC------------CCCCHHHHH
Confidence 455667788888764 3689999976421 12222 23356789999988642111 112334445
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 303 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
++.+.+ ..++++++.||+.+..++..++.+||+++.+|
T Consensus 164 ~i~~~~-----~~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 164 LMKEAV-----GGRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred HHHHhc-----ccCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 554432 23579999999999999999999999999876
No 164
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=96.42 E-value=0.027 Score=56.19 Aligned_cols=89 Identities=27% Similarity=0.284 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCC-CCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 232 LAELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 232 l~~~I~~Lr~~~p-~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
+...+.++|+..| +.+|.| ++.....+..+.++|||+|-+++. ....+.++.+.+
T Consensus 164 ~~~av~~~r~~~~~~~~Igv----ev~t~eea~~A~~~gaDyI~ld~~------------------~~e~lk~~v~~~-- 219 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEV----EVESLEEAEEAAEAGADIIMLDNM------------------KPEEIKEAVQLL-- 219 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEE----EeCCHHHHHHHHHcCCCEEEECCC------------------CHHHHHHHHHHh--
Confidence 4456888888765 334433 444567788899999999988553 114566666654
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
+.++|+.++||| |...+..-+..|||.+.+|...
T Consensus 220 ---~~~ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait 253 (265)
T TIGR00078 220 ---KGRVLLEASGGI-TLDNLEEYAETGVDVISSGALT 253 (265)
T ss_pred ---cCCCcEEEECCC-CHHHHHHHHHcCCCEEEeCHHH
Confidence 235999999999 7999999999999999997644
No 165
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=96.39 E-value=0.097 Score=52.11 Aligned_cols=51 Identities=16% Similarity=0.039 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhc
Q psy10999 299 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMG 353 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~alg 353 (447)
..+.+..+.+++.. ++||.+-=||+|+.|+.+.. .|||+|.+|++++-.+.
T Consensus 184 ~~l~~~i~~ik~~~---~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~ 234 (259)
T PF00290_consen 184 DELKEFIKRIKKHT---DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIE 234 (259)
T ss_dssp HHHHHHHHHHHHTT---SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHH
T ss_pred HHHHHHHHHHHhhc---CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHH
Confidence 45555555565543 79999999999999997777 99999999999987653
No 166
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=96.34 E-value=0.027 Score=56.56 Aligned_cols=94 Identities=19% Similarity=0.114 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+.+.+.|..+|+..|..+| ..|+.....+..+.++|+|.|.+++. +.+-+.++++.++
T Consensus 173 ~~i~~av~~~r~~~~~~kI----eVEv~tleea~ea~~~GaDiI~lDn~------------------~~e~l~~~v~~l~ 230 (277)
T TIGR01334 173 FDWGGAIGRLKQTAPERKI----TVEADTIEQALTVLQASPDILQLDKF------------------TPQQLHHLHERLK 230 (277)
T ss_pred ccHHHHHHHHHHhCCCCCE----EEECCCHHHHHHHHHcCcCEEEECCC------------------CHHHHHHHHHHHh
Confidence 4577889999988766444 44566778899999999999999854 1234566666654
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
. .+.++.|.++||| |...+..-...|+|.+.+|.++
T Consensus 231 ~--~~~~~~leasGGI-~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 231 F--FDHIPTLAAAGGI-NPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred c--cCCCEEEEEECCC-CHHHHHHHHhcCCCEEEeCcce
Confidence 2 2357899999999 7889999999999999998753
No 167
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.33 E-value=0.016 Score=56.18 Aligned_cols=74 Identities=24% Similarity=0.242 Sum_probs=54.0
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..++.+.+.|+|.|.+--.++.. .. -......|.++.+.. .+|+++.|||++..|+..++.+||
T Consensus 36 e~a~~~~~~G~~~l~i~dl~~~~--------~~-~~~~~~~i~~i~~~~-------~~~l~v~GGi~~~~~~~~~~~~Ga 99 (241)
T PRK13585 36 EVAKRWVDAGAETLHLVDLDGAF--------EG-ERKNAEAIEKIIEAV-------GVPVQLGGGIRSAEDAASLLDLGV 99 (241)
T ss_pred HHHHHHHHcCCCEEEEEechhhh--------cC-CcccHHHHHHHHHHc-------CCcEEEcCCcCCHHHHHHHHHcCC
Confidence 45667778899988776554321 00 112344555555432 589999999999999999999999
Q ss_pred CeeccChHHH
Q psy10999 340 DEIGLSTAPL 349 (447)
Q Consensus 340 d~V~iGt~~L 349 (447)
|.|.+|+..+
T Consensus 100 ~~v~iGs~~~ 109 (241)
T PRK13585 100 DRVILGTAAV 109 (241)
T ss_pred CEEEEChHHh
Confidence 9999999765
No 168
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=96.29 E-value=0.066 Score=54.38 Aligned_cols=104 Identities=16% Similarity=0.158 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhCC-CCceEEEEeeecc-HHHHHHHHHHC---CCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHH
Q psy10999 232 LAELIYDLKCANP-NARISVKLVSEVG-VGVVASGVAKG---KAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 306 (447)
Q Consensus 232 l~~~I~~Lr~~~p-~~pI~VKlv~~~G-i~~~A~~a~~a---GaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~ 306 (447)
+.+.++..|+..| ..+|.|-+=. .. ...+|..+.++ ++|+|.+|+.++..|. ....+.++.+
T Consensus 170 ~~~A~~~~~~~~p~~~~i~vevdt-~~~~v~eal~~~~~~~~~~d~I~lDn~~~~~G~------------~~~~~~~~~~ 236 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIALIDT-FNDEKEEALKAAKALGDKLDGVRLDTPSSRRGV------------FRYLIREVRW 236 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEEEEee-cCcchHHHHHHHHHhCCCCcEEEECCCCCCCCC------------HHHHHHHHHH
Confidence 5567888888877 3455554211 11 11245555555 5999999998654332 3356778888
Q ss_pred HHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 307 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 307 ~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
+|+..|. +++.|++|||| |...+.+-...|+|.+++|+....
T Consensus 237 ~l~~~g~-~~~~ieaSGgI-~~~~i~~~a~~gvD~isvGs~~~~ 278 (302)
T cd01571 237 ALDIRGY-KHVKIFVSGGL-DEEDIKELEDVGVDAFGVGTAISK 278 (302)
T ss_pred HHHhCCC-CCeEEEEeCCC-CHHHHHHHHHcCCCEEECCcccCC
Confidence 8877654 36899999999 999999999999999999997643
No 169
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.29 E-value=0.033 Score=56.00 Aligned_cols=92 Identities=17% Similarity=0.191 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+.+.+.|..+|+..|. ..|+..|+.....+..++++|||.|.+++.. .+-+.+++..+
T Consensus 177 ~~i~~av~~~r~~~~~---~~kIeVEv~slee~~ea~~~gaDiImLDn~s------------------~e~l~~av~~~- 234 (281)
T PRK06543 177 LDLTEALRHVRAQLGH---TTHVEVEVDRLDQIEPVLAAGVDTIMLDNFS------------------LDDLREGVELV- 234 (281)
T ss_pred hHHHHHHHHHHHhCCC---CCcEEEEeCCHHHHHHHHhcCCCEEEECCCC------------------HHHHHHHHHHh-
Confidence 4577889999987652 3455556677788899999999999999861 13466666654
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
+++..+.++||| |...+..-...|+|.+.+|...
T Consensus 235 ----~~~~~leaSGgI-~~~ni~~yA~tGVD~Is~galt 268 (281)
T PRK06543 235 ----DGRAIVEASGNV-NLNTVGAIASTGVDVISVGALT 268 (281)
T ss_pred ----CCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 346789999999 7788888888999999999754
No 170
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=96.28 E-value=0.088 Score=51.08 Aligned_cols=105 Identities=14% Similarity=0.092 Sum_probs=66.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+...|..+|+. +...+|=+-+.+.+......+. -+|.|.+=+-+.|.+.- . +=.....-+.++.+.+.++
T Consensus 95 ~~~~l~~ik~~--g~k~GlalnP~Tp~~~i~~~l~--~~D~vlvMtV~PGfgGq-----~-fi~~~lekI~~l~~~~~~~ 164 (220)
T PRK08883 95 VDRTLQLIKEH--GCQAGVVLNPATPLHHLEYIMD--KVDLILLMSVNPGFGGQ-----S-FIPHTLDKLRAVRKMIDES 164 (220)
T ss_pred HHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHH--hCCeEEEEEecCCCCCc-----e-ecHhHHHHHHHHHHHHHhc
Confidence 45677888886 4555555545443433332222 56888665444443321 1 1112445667776666554
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
+. .++|.+||||. ...+.+....|||.+.+|+++.
T Consensus 165 ~~--~~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf 199 (220)
T PRK08883 165 GR--DIRLEIDGGVK-VDNIREIAEAGADMFVAGSAIF 199 (220)
T ss_pred CC--CeeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHh
Confidence 42 48999999998 8899999999999999999853
No 171
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=96.26 E-value=0.015 Score=56.14 Aligned_cols=74 Identities=23% Similarity=0.205 Sum_probs=52.5
Q ss_pred HHHHHHHHCCCcEEEEecCCCC-CCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGG-TGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GG-tg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
..|+...+.|+|.|.+---++. ++ ..+....+.++.+.. .+||+++||+++-.|+.+++.+|
T Consensus 34 ~~a~~~~~~g~~~i~i~dl~~~~~~----------~~~n~~~~~~i~~~~-------~~pv~~~ggi~~~~d~~~~~~~G 96 (232)
T TIGR03572 34 NAARIYNAKGADELIVLDIDASKRG----------REPLFELISNLAEEC-------FMPLTVGGGIRSLEDAKKLLSLG 96 (232)
T ss_pred HHHHHHHHcCCCEEEEEeCCCcccC----------CCCCHHHHHHHHHhC-------CCCEEEECCCCCHHHHHHHHHcC
Confidence 4556667789996654433221 11 113445566665542 58999999999999999999999
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
|+.|.+|+..+-
T Consensus 97 ~~~vilg~~~l~ 108 (232)
T TIGR03572 97 ADKVSINTAALE 108 (232)
T ss_pred CCEEEEChhHhc
Confidence 999999998764
No 172
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.25 E-value=0.035 Score=55.82 Aligned_cols=91 Identities=18% Similarity=0.130 Sum_probs=70.1
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.+.|+.+|+..| ...|+..|+.....+..++++|+|.|.+++.. .+-+.++++.+
T Consensus 180 i~~ai~~~r~~~~---~~~kIeVEv~tleea~ea~~~gaDiI~LDn~s------------------~e~l~~av~~~--- 235 (281)
T PRK06106 180 VREAIRRARAGVG---HLVKIEVEVDTLDQLEEALELGVDAVLLDNMT------------------PDTLREAVAIV--- 235 (281)
T ss_pred HHHHHHHHHHhCC---CCCcEEEEeCCHHHHHHHHHcCCCEEEeCCCC------------------HHHHHHHHHHh---
Confidence 5677888888765 23555567777788999999999999999861 14466666653
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
+.+.++.++||| |...+..-...|+|.+.+|...-
T Consensus 236 --~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~Galth 270 (281)
T PRK06106 236 --AGRAITEASGRI-TPETAPAIAASGVDLISVGWLTH 270 (281)
T ss_pred --CCCceEEEECCC-CHHHHHHHHhcCCCEEEeChhhc
Confidence 346789999999 67888888899999999998543
No 173
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.23 E-value=0.041 Score=55.24 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=66.9
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.+.+..+|+..|.. .|+..++.....+..+.+.|+|+|.+++ ++ .+.|.++.+.+
T Consensus 174 ~~~~v~~aR~~~~~~---~~Igvsv~tleea~~A~~~gaDyI~lD~---------------~~---~e~l~~~~~~~--- 229 (277)
T PRK08072 174 ITKAVTSVREKLGHM---VKIEVETETEEQVREAVAAGADIIMFDN---------------RT---PDEIREFVKLV--- 229 (277)
T ss_pred HHHHHHHHHHhCCCC---CEEEEEeCCHHHHHHHHHcCCCEEEECC---------------CC---HHHHHHHHHhc---
Confidence 667888999887531 2222344455678888999999998842 11 15566666643
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
+.+++|.+.||| |..++...+..|+|.+.+|.+..
T Consensus 230 --~~~i~i~AiGGI-t~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 230 --PSAIVTEASGGI-TLENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred --CCCceEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence 346889999999 89999999999999999998654
No 174
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.21 E-value=0.037 Score=55.88 Aligned_cols=92 Identities=14% Similarity=0.133 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
.+.+.|..+|+..| ...|+..|+.....+..++++|||.|.+++.. .+-+.++++.+
T Consensus 182 ~i~~av~~~r~~~~---~~~kIeVEv~tleea~~a~~agaDiImLDnms------------------pe~l~~av~~~-- 238 (290)
T PRK06559 182 SVQKAIAQARAYAP---FVKMVEVEVESLAAAEEAAAAGADIIMLDNMS------------------LEQIEQAITLI-- 238 (290)
T ss_pred cHHHHHHHHHHhCC---CCCeEEEECCCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHh--
Confidence 46677888888754 23455666777788999999999999999861 14466666654
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
+.++.+.++||| |...+..-...|+|.+.+|.+..
T Consensus 239 ---~~~~~leaSGGI-~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 239 ---AGRSRIECSGNI-DMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred ---cCceEEEEECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 347899999999 67888888889999999998654
No 175
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=96.21 E-value=0.04 Score=55.09 Aligned_cols=93 Identities=25% Similarity=0.287 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
+|.+.|...|+..|. .+|+-.|+....++..+.++|||+|-+||.. | +-+.++++.+
T Consensus 173 ~i~~Av~~aR~~~~~---~~kIEVEvesle~~~eAl~agaDiImLDNm~----------------~--e~~~~av~~l-- 229 (280)
T COG0157 173 SITEAVRRARAAAPF---TKKIEVEVESLEEAEEALEAGADIIMLDNMS----------------P--EELKEAVKLL-- 229 (280)
T ss_pred cHHHHHHHHHHhCCC---CceEEEEcCCHHHHHHHHHcCCCEEEecCCC----------------H--HHHHHHHHHh--
Confidence 477789999987544 5666667778889999999999999999862 1 3456666655
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
++++++-+-+|||| |...+..-...|.|.+.+|.+.
T Consensus 230 -~~~~~~~lEaSGgI-t~~ni~~yA~tGVD~IS~galt 265 (280)
T COG0157 230 -GLAGRALLEASGGI-TLENIREYAETGVDVISVGALT 265 (280)
T ss_pred -ccCCceEEEEeCCC-CHHHHHHHhhcCCCEEEeCccc
Confidence 56678999999999 6778888888999999998754
No 176
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=96.20 E-value=0.026 Score=52.86 Aligned_cols=77 Identities=17% Similarity=0.008 Sum_probs=51.8
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccC-CCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNA-GLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~-G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
..+..+.+.|+|+|.++..-- |..- ... .......+.++.+.. .++||++.||| +..++.+++.+|
T Consensus 107 ~e~~~a~~~g~dyi~~~~v~~-t~~k-----~~~~~~~g~~~l~~~~~~~------~~~pv~a~GGI-~~~~~~~~~~~G 173 (196)
T TIGR00693 107 EELAEAEAEGADYIGFGPIFP-TPTK-----KDPAPPAGVELLREIAATS------IDIPIVAIGGI-TLENAAEVLAAG 173 (196)
T ss_pred HHHHHHhHcCCCEEEECCccC-CCCC-----CCCCCCCCHHHHHHHHHhc------CCCCEEEECCc-CHHHHHHHHHcC
Confidence 455668889999999854311 1110 010 111234455554432 14899999999 689999999999
Q ss_pred CCeeccChHHH
Q psy10999 339 ADEIGLSTAPL 349 (447)
Q Consensus 339 Ad~V~iGt~~L 349 (447)
|++|.+++.++
T Consensus 174 ~~gva~~~~i~ 184 (196)
T TIGR00693 174 ADGVAVVSAIM 184 (196)
T ss_pred CCEEEEhHHhh
Confidence 99999999876
No 177
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.18 E-value=0.025 Score=55.27 Aligned_cols=70 Identities=13% Similarity=0.023 Sum_probs=51.3
Q ss_pred HHHHHHH-CCCcEEEE---ecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 261 VASGVAK-GKAEHIVI---SGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 261 ~A~~a~~-aGaD~I~V---sG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
.|+...+ .|||-+.| ++...+. ......+.++.+.+ .+||++.|||||-.|+-+.+.
T Consensus 36 ~a~~~~~~~Ga~~l~ivDLd~a~~~~------------~~n~~~I~~i~~~~-------~~pi~vGGGIrs~e~v~~~l~ 96 (234)
T PRK13587 36 SIAYYSQFECVNRIHIVDLIGAKAQH------------AREFDYIKSLRRLT-------TKDIEVGGGIRTKSQIMDYFA 96 (234)
T ss_pred HHHHHHhccCCCEEEEEECcccccCC------------cchHHHHHHHHhhc-------CCeEEEcCCcCCHHHHHHHHH
Confidence 4455555 58887654 4442221 13455666766643 589999999999999999999
Q ss_pred cCCCeeccChHHH
Q psy10999 337 LGADEIGLSTAPL 349 (447)
Q Consensus 337 LGAd~V~iGt~~L 349 (447)
+||+.|.+||..+
T Consensus 97 ~Ga~kvvigt~a~ 109 (234)
T PRK13587 97 AGINYCIVGTKGI 109 (234)
T ss_pred CCCCEEEECchHh
Confidence 9999999999775
No 178
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=96.17 E-value=0.041 Score=55.46 Aligned_cols=93 Identities=17% Similarity=0.131 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+++.+.|..+|+..|..+| ..|+.....+..+.++|||.|.+++.. .+-+.++++.++
T Consensus 174 ~~i~~av~~~r~~~~~~kI----eVEv~tleqa~ea~~agaDiI~LDn~~------------------~e~l~~av~~~~ 231 (284)
T PRK06096 174 QDWSGAINQLRRHAPEKKI----VVEADTPKEAIAALRAQPDVLQLDKFS------------------PQQATEIAQIAP 231 (284)
T ss_pred ccHHHHHHHHHHhCCCCCE----EEECCCHHHHHHHHHcCCCEEEECCCC------------------HHHHHHHHHHhh
Confidence 4577889999988765444 445667788999999999999997651 144667766654
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 347 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~ 347 (447)
+. +.++.|-++||| |...+..-...|+|.+.+|.+
T Consensus 232 ~~--~~~~~leaSGGI-~~~ni~~yA~tGvD~Is~gal 266 (284)
T PRK06096 232 SL--APHCTLSLAGGI-NLNTLKNYADCGIRLFITSAP 266 (284)
T ss_pred cc--CCCeEEEEECCC-CHHHHHHHHhcCCCEEEECcc
Confidence 21 357899999999 688898999999999988875
No 179
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=96.13 E-value=0.075 Score=51.21 Aligned_cols=101 Identities=24% Similarity=0.175 Sum_probs=73.7
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.|+.|++. ++++.+=.|- ....|..++++||++| +=+=|+ ++++|.+....+.++.+.+..++.
T Consensus 92 ~ai~~L~~~--gi~v~~T~V~---s~~Qa~~Aa~AGA~yv--sP~vgR--------~~~~g~dg~~~i~~i~~~~~~~~~ 156 (211)
T cd00956 92 KAIKKLSEE--GIKTNVTAIF---SAAQALLAAKAGATYV--SPFVGR--------IDDLGGDGMELIREIRTIFDNYGF 156 (211)
T ss_pred HHHHHHHHc--CCceeeEEec---CHHHHHHHHHcCCCEE--EEecCh--------HhhcCCCHHHHHHHHHHHHHHcCC
Confidence 456666554 4455444322 2345667889999995 444455 678888888999999999887764
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
. . =+...|+|+..++..|+.+|||.|=+.-..+..+
T Consensus 157 ~--t-kil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l 192 (211)
T cd00956 157 D--T-KILAASIRNPQHVIEAALAGADAITLPPDVLEQL 192 (211)
T ss_pred C--c-eEEecccCCHHHHHHHHHcCCCEEEeCHHHHHHH
Confidence 3 3 3456789999999999999999999998877654
No 180
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=96.12 E-value=0.031 Score=53.68 Aligned_cols=91 Identities=18% Similarity=0.119 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
++.+.|+++++.+|++.|++-.|. ...+++.+.++||++|+--+. -+++.+++.+
T Consensus 45 ~a~~~i~~l~~~~~~~~vGAGTVl---~~~~a~~a~~aGA~FivsP~~----------------------~~~v~~~~~~ 99 (204)
T TIGR01182 45 VALDAIRLLRKEVPDALIGAGTVL---NPEQLRQAVDAGAQFIVSPGL----------------------TPELAKHAQD 99 (204)
T ss_pred cHHHHHHHHHHHCCCCEEEEEeCC---CHHHHHHHHHcCCCEEECCCC----------------------CHHHHHHHHH
Confidence 356789999998887555554332 346788899999999942211 1245555554
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCee------ccC-hHHHHHh
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEI------GLS-TAPLITM 352 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V------~iG-t~~L~al 352 (447)
+| ++.+- |+.|+.++.+|+.+||+.| .+| -.++-++
T Consensus 100 ~~----i~~iP--G~~TptEi~~A~~~Ga~~vKlFPA~~~GG~~yikal 142 (204)
T TIGR01182 100 HG----IPIIP--GVATPSEIMLALELGITALKLFPAEVSGGVKMLKAL 142 (204)
T ss_pred cC----CcEEC--CCCCHHHHHHHHHCCCCEEEECCchhcCCHHHHHHH
Confidence 43 66665 9999999999999999975 243 5555554
No 181
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=96.08 E-value=0.021 Score=55.56 Aligned_cols=47 Identities=17% Similarity=0.090 Sum_probs=39.4
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 296 PWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 296 p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
+....+.++.+.. .+||+++|||++-.|+.+.+.+||+.|.+||..+
T Consensus 60 ~n~~~i~~i~~~~-------~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~ 106 (228)
T PRK04128 60 KNLDVVKNIIRET-------GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF 106 (228)
T ss_pred chHHHHHHHHhhC-------CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence 4455666666542 5899999999999999999999999999999865
No 182
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.08 E-value=0.063 Score=53.77 Aligned_cols=91 Identities=25% Similarity=0.216 Sum_probs=64.5
Q ss_pred HHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 233 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 233 ~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
.+.+..+|+..|+.+|.| ++.....+..+.++|+|+|-+++.. | ..+.++.+.++..
T Consensus 171 ~~av~~~R~~~~~~~IgV----ev~t~eea~~A~~~gaD~I~ld~~~----------------p--~~l~~~~~~~~~~- 227 (272)
T cd01573 171 LKALARLRATAPEKKIVV----EVDSLEEALAAAEAGADILQLDKFS----------------P--EELAELVPKLRSL- 227 (272)
T ss_pred HHHHHHHHHhCCCCeEEE----EcCCHHHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHHHhcc-
Confidence 567888888766544322 3444567778889999999997531 1 1244555544321
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
..++|++++||| +...+..-+..|+|.+.+|..+
T Consensus 228 -~~~i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 228 -APPVLLAAAGGI-NIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred -CCCceEEEECCC-CHHHHHHHHHcCCcEEEEChhh
Confidence 136999999999 8999999999999999777653
No 183
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=96.03 E-value=0.045 Score=55.44 Aligned_cols=90 Identities=17% Similarity=0.133 Sum_probs=69.6
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.+.|..+|+..|..+| ..|+.....+..++++|+|+|.+++.. | +-+.++++.+
T Consensus 195 i~~av~~~r~~~~~~kI----eVEv~sleea~ea~~~gaDiI~LDn~s----------------~--e~~~~av~~~--- 249 (296)
T PRK09016 195 IRQAVEKAFWLHPDVPV----EVEVENLDELDQALKAGADIIMLDNFT----------------T--EQMREAVKRT--- 249 (296)
T ss_pred HHHHHHHHHHhCCCCCE----EEEeCCHHHHHHHHHcCCCEEEeCCCC----------------h--HHHHHHHHhh---
Confidence 66778888887766554 445667788999999999999998861 1 4456666543
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
+.++.+.++||| |...+..-...|+|.+.+|.+.-
T Consensus 250 --~~~~~ieaSGGI-~~~ni~~yA~tGVD~Is~galth 284 (296)
T PRK09016 250 --NGRALLEVSGNV-TLETLREFAETGVDFISVGALTK 284 (296)
T ss_pred --cCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCcccc
Confidence 347999999999 67889899999999999998543
No 184
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=96.03 E-value=0.1 Score=48.90 Aligned_cols=72 Identities=15% Similarity=0.180 Sum_probs=46.6
Q ss_pred CCCcEEEEecCC-CCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 268 GKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 268 aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
.++|+|.+.+.. |+|+.. +.......+.++.+...++ +.++|++++|||.. .++..++..|||++.+|+
T Consensus 126 ~~~d~i~~~~~~~g~tg~~-------~~~~~~~~i~~~~~~~~~~--~~~~pi~v~GGI~~-env~~~~~~gad~iivgs 195 (211)
T cd00429 126 DEVDLVLVMSVNPGFGGQK-------FIPEVLEKIRKLRELIPEN--NLNLLIEVDGGINL-ETIPLLAEAGADVLVAGS 195 (211)
T ss_pred hhCCEEEEEEECCCCCCcc-------cCHHHHHHHHHHHHHHHhc--CCCeEEEEECCCCH-HHHHHHHHcCCCEEEECH
Confidence 448999876653 444321 1111223334443333211 12489999999996 999999999999999999
Q ss_pred HHH
Q psy10999 347 APL 349 (447)
Q Consensus 347 ~~L 349 (447)
++.
T Consensus 196 ai~ 198 (211)
T cd00429 196 ALF 198 (211)
T ss_pred HHh
Confidence 876
No 185
>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]
Probab=96.01 E-value=0.035 Score=54.21 Aligned_cols=35 Identities=29% Similarity=0.279 Sum_probs=30.6
Q ss_pred ceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 316 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 316 ~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
.|.-+++|||.|+.|.+-++.||||+|++|+....
T Consensus 208 PVvnFAAGGvATPADAALMM~LGadGVFVGSGIFK 242 (296)
T COG0214 208 PVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK 242 (296)
T ss_pred CeEeecccCcCChhHHHHHHHhCCCeEEecccccC
Confidence 35568999999999999999999999999986543
No 186
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=95.93 E-value=0.068 Score=54.39 Aligned_cols=101 Identities=13% Similarity=0.014 Sum_probs=70.3
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHH------CCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHH
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAK------GKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 307 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~------aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~ 307 (447)
+.+..+|+..+..+...|+..|+.....+..+.+ +|||.|.+++.-- +|. ... ....-|.+++..
T Consensus 188 ~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~----~~~----~~~-~~~e~l~~av~~ 258 (308)
T PLN02716 188 NAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVV----PLE----NGD-VDVSMLKEAVEL 258 (308)
T ss_pred HHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcc----ccc----ccC-CCHHHHHHHHHh
Confidence 4456666532233445677778888888999999 9999999998711 111 011 233556666665
Q ss_pred HHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 308 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 308 l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
+ ++++++.++||| |...+..-...|+|.+.+|...-
T Consensus 259 ~-----~~~~~lEaSGGI-t~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 259 I-----NGRFETEASGNV-TLDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred h-----CCCceEEEECCC-CHHHHHHHHHcCCCEEEeCcccc
Confidence 3 357889999999 67888888899999999997543
No 187
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=95.92 E-value=0.033 Score=54.53 Aligned_cols=65 Identities=20% Similarity=0.091 Sum_probs=47.5
Q ss_pred HCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCce-EEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 267 KGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRV-VLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 267 ~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v-~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
-.|...+.+... ++++ ..+....+.++.+.+ .+ ||++.||||+..++.+++..|||.|.+|
T Consensus 152 ~~g~~~vYle~g-s~~g----------~~~~~e~I~~v~~~~-------~~~pvivGGGIrs~e~a~~~l~~GAD~VVVG 213 (232)
T PRK04169 152 YLGMPIVYLEYG-GGAG----------DPVPPEMVKAVKKAL-------DITPLIYGGGIRSPEQARELMAAGADTIVVG 213 (232)
T ss_pred HcCCCeEEEECC-CCCC----------CCCCHHHHHHHHHhc-------CCCcEEEECCCCCHHHHHHHHHhCCCEEEEC
Confidence 357666766643 2222 113345666666653 35 9999999999999999999999999999
Q ss_pred hHHH
Q psy10999 346 TAPL 349 (447)
Q Consensus 346 t~~L 349 (447)
+.+.
T Consensus 214 Sai~ 217 (232)
T PRK04169 214 NIIE 217 (232)
T ss_pred hHHh
Confidence 9875
No 188
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.89 E-value=0.023 Score=55.82 Aligned_cols=70 Identities=20% Similarity=0.045 Sum_probs=49.7
Q ss_pred HHHHHHCCCcEEEEecC--CCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc--
Q psy10999 262 ASGVAKGKAEHIVISGH--DGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL-- 337 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~--~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL-- 337 (447)
+..+.+.|+..|++..- +| |. .| |....+.++.+.. ++|||++||+++-.|+.++..+
T Consensus 150 ~~~~~~~g~~~ii~tdI~rdG-t~---------~G-~d~el~~~l~~~~-------~~pviasGGv~s~~Dl~~l~~~~~ 211 (241)
T PRK14114 150 LKRLKEYGLEEIVHTEIEKDG-TL---------QE-HDFSLTRKIAIEA-------EVKVFAAGGISSENSLKTAQRVHR 211 (241)
T ss_pred HHHHHhcCCCEEEEEeechhh-cC---------CC-cCHHHHHHHHHHC-------CCCEEEECCCCCHHHHHHHHhccc
Confidence 44455666666655422 22 21 13 5556677766542 6999999999999999999998
Q ss_pred ---C-CCeeccChHHH
Q psy10999 338 ---G-ADEIGLSTAPL 349 (447)
Q Consensus 338 ---G-Ad~V~iGt~~L 349 (447)
| +++|.+|+++.
T Consensus 212 ~~~g~v~gvivg~Al~ 227 (241)
T PRK14114 212 ETNGLLKGVIVGRAFL 227 (241)
T ss_pred ccCCcEEEEEEehHHH
Confidence 6 99999999864
No 189
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=95.88 E-value=0.023 Score=55.38 Aligned_cols=73 Identities=21% Similarity=0.085 Sum_probs=52.4
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..|+...+.|+|.+.|---++-.+ ..+....+.++.+.+ .+||++.||||+-.|+-+.+.+||
T Consensus 39 ~~a~~~~~~g~~~l~i~DLd~~~~----------~~~n~~~i~~i~~~~-------~~~v~vgGGir~~edv~~~l~~Ga 101 (233)
T cd04723 39 DVARAYKELGFRGLYIADLDAIMG----------RGDNDEAIRELAAAW-------PLGLWVDGGIRSLENAQEWLKRGA 101 (233)
T ss_pred HHHHHHHHCCCCEEEEEeCccccC----------CCccHHHHHHHHHhC-------CCCEEEecCcCCHHHHHHHHHcCC
Confidence 456666778888775543322110 113455666666543 489999999999999999999999
Q ss_pred CeeccChHHH
Q psy10999 340 DEIGLSTAPL 349 (447)
Q Consensus 340 d~V~iGt~~L 349 (447)
+.|.+||..+
T Consensus 102 ~~viigt~~~ 111 (233)
T cd04723 102 SRVIVGTETL 111 (233)
T ss_pred CeEEEcceec
Confidence 9999999764
No 190
>PRK07226 fructose-bisphosphate aldolase; Provisional
Probab=95.82 E-value=0.041 Score=54.68 Aligned_cols=65 Identities=15% Similarity=0.061 Sum_probs=46.3
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCC--ChHHHHHH----H
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIR--TGFDVVVA----A 335 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIr--tg~Dv~kA----l 335 (447)
+..+.+.|||+|..+ ..| ....+.++.+. .++||.++|||+ |-.++... +
T Consensus 166 ~~~a~e~GAD~vKt~-~~~----------------~~~~l~~~~~~-------~~ipV~a~GGi~~~~~~~~l~~v~~~~ 221 (267)
T PRK07226 166 ARVAAELGADIVKTN-YTG----------------DPESFREVVEG-------CPVPVVIAGGPKTDTDREFLEMVRDAM 221 (267)
T ss_pred HHHHHHHCCCEEeeC-CCC----------------CHHHHHHHHHh-------CCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 455778999999776 211 12455555543 259999999999 66665544 5
Q ss_pred HcCCCeeccChHHHH
Q psy10999 336 LLGADEIGLSTAPLI 350 (447)
Q Consensus 336 aLGAd~V~iGt~~L~ 350 (447)
..||+++.+|+..+.
T Consensus 222 ~aGA~Gis~gr~i~~ 236 (267)
T PRK07226 222 EAGAAGVAVGRNVFQ 236 (267)
T ss_pred HcCCcEEehhhhhhc
Confidence 999999999998763
No 191
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=95.81 E-value=0.11 Score=50.66 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=67.7
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCC-Cc---------------------cccc--
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTG-AS---------------------SWTG-- 289 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg-~a---------------------~~~~-- 289 (447)
+.|++||+.+|+.++-||+.... .......+.++|+|.|+|=.- ++.. .. +...
T Consensus 54 ~~v~~lr~~~~~~~lDvHLm~~~-p~~~i~~~~~~Gad~itvH~e-a~~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~ 131 (228)
T PTZ00170 54 PVVKSLRKHLPNTFLDCHLMVSN-PEKWVDDFAKAGASQFTFHIE-ATEDDPKAVARKIREAGMKVGVAIKPKTPVEVLF 131 (228)
T ss_pred HHHHHHHhcCCCCCEEEEECCCC-HHHHHHHHHHcCCCEEEEecc-CCchHHHHHHHHHHHCCCeEEEEECCCCCHHHHH
Confidence 57889999888899999998533 334457788999999988433 2211 00 0000
Q ss_pred --c-----c-------c---CCCCh-HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 290 --I-----K-------N---AGLPW-ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 290 --~-----~-------~---~G~p~-~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
+ + + .|.+. ...+.++.+.. + ....+.|.+||||+. ..+..+...|||.+.+||+.
T Consensus 132 ~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki~~~~-~--~~~~~~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI 204 (228)
T PTZ00170 132 PLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELR-K--RYPHLNIQVDGGINL-ETIDIAADAGANVIVAGSSI 204 (228)
T ss_pred HHHccchhhhHHhhhcccCCCCcEecHHHHHHHHHHH-H--hcccCeEEECCCCCH-HHHHHHHHcCCCEEEEchHH
Confidence 0 0 0 01111 12233333321 1 123478999999976 47778899999999999984
No 192
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=95.79 E-value=0.044 Score=54.20 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=54.8
Q ss_pred HHHHHHHHCCCcEEEEecCCCC-CCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGG-TGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GG-tg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
+.|+...+.|+|.|.+.--++- ++ ..+....+.++.+.. .+||+++|||++-.|+.+.+.+|
T Consensus 34 ~~a~~~~~~g~~~l~i~Dl~~~~~~----------~~~n~~~i~~i~~~~-------~~pv~~gGGi~s~~d~~~l~~~G 96 (258)
T PRK01033 34 NAVRIFNEKEVDELIVLDIDASKRG----------SEPNYELIENLASEC-------FMPLCYGGGIKTLEQAKKIFSLG 96 (258)
T ss_pred HHHHHHHHcCCCEEEEEECCCCcCC----------CcccHHHHHHHHHhC-------CCCEEECCCCCCHHHHHHHHHCC
Confidence 4566777889988866544332 11 124556677766542 58999999999999999999999
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
|+.|.+|+..+-
T Consensus 97 ~~~vvigs~~~~ 108 (258)
T PRK01033 97 VEKVSINTAALE 108 (258)
T ss_pred CCEEEEChHHhc
Confidence 999999997643
No 193
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=95.76 E-value=0.13 Score=48.42 Aligned_cols=75 Identities=15% Similarity=0.129 Sum_probs=49.5
Q ss_pred HHHCCCcEEEEecCC-CCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeec
Q psy10999 265 VAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIG 343 (447)
Q Consensus 265 a~~aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~ 343 (447)
....++|+|.+.... |+||. .+.......+.++.+.+.+. +..+|+.++|||+ ..++..++..|||.+.
T Consensus 122 ~~~~~~d~i~~~~~~~g~tg~-------~~~~~~~~~i~~i~~~~~~~--~~~~~i~v~GGI~-~env~~l~~~gad~ii 191 (210)
T TIGR01163 122 YVLPDVDLVLLMSVNPGFGGQ-------KFIPDTLEKIREVRKMIDEN--GLSILIEVDGGVN-DDNARELAEAGADILV 191 (210)
T ss_pred HHHhhCCEEEEEEEcCCCCcc-------cccHHHHHHHHHHHHHHHhc--CCCceEEEECCcC-HHHHHHHHHcCCCEEE
Confidence 344579998776543 44432 11122334555555544321 2247899999995 6999999999999999
Q ss_pred cChHHH
Q psy10999 344 LSTAPL 349 (447)
Q Consensus 344 iGt~~L 349 (447)
+|+++.
T Consensus 192 vgsai~ 197 (210)
T TIGR01163 192 AGSAIF 197 (210)
T ss_pred EChHHh
Confidence 999875
No 194
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=95.72 E-value=0.032 Score=55.32 Aligned_cols=67 Identities=13% Similarity=-0.034 Sum_probs=52.3
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..|+.-.+.||+.|+|--- |.+....+.++.+.+ .+||.+.||||+ .++-+.+.+||
T Consensus 42 ~~A~~~~~~Ga~~lHvVDL---------------g~~n~~~i~~i~~~~-------~~~v~vGGGIr~-e~v~~~l~aGa 98 (253)
T TIGR02129 42 YYAKLYKDDGVKGCHVIML---------------GPNNDDAAKEALHAY-------PGGLQVGGGIND-TNAQEWLDEGA 98 (253)
T ss_pred HHHHHHHHcCCCEEEEEEC---------------CCCcHHHHHHHHHhC-------CCCEEEeCCcCH-HHHHHHHHcCC
Confidence 4566777889988866432 334456677776653 589999999998 99999999999
Q ss_pred CeeccChHHH
Q psy10999 340 DEIGLSTAPL 349 (447)
Q Consensus 340 d~V~iGt~~L 349 (447)
+.|.+||.++
T Consensus 99 ~rVvIGS~av 108 (253)
T TIGR02129 99 SHVIVTSWLF 108 (253)
T ss_pred CEEEECcHHH
Confidence 9999999664
No 195
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=95.71 E-value=0.05 Score=54.02 Aligned_cols=100 Identities=20% Similarity=0.139 Sum_probs=65.3
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+.+.+++..-+.. |.-+.|- +-...+.+.+.++|++.|-|.+.+=.|. .+.... -.++...+
T Consensus 145 ~~l~~l~~~a~~l--Gle~lVE----Vh~~~El~~al~~~a~iiGINnRdL~tf----------~vd~~~-~~~l~~~i- 206 (254)
T PF00218_consen 145 DQLEELLELAHSL--GLEALVE----VHNEEELERALEAGADIIGINNRDLKTF----------EVDLNR-TEELAPLI- 206 (254)
T ss_dssp HHHHHHHHHHHHT--T-EEEEE----ESSHHHHHHHHHTT-SEEEEESBCTTTC----------CBHTHH-HHHHHCHS-
T ss_pred HHHHHHHHHHHHc--CCCeEEE----ECCHHHHHHHHHcCCCEEEEeCccccCc----------ccChHH-HHHHHhhC-
Confidence 4455555555554 4444444 4456778888899999999988755442 111111 12222332
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 351 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~a 351 (447)
.+++.+++.+||.+..|+.+....|+|+|.+|+.+|.+
T Consensus 207 ----p~~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~ 244 (254)
T PF00218_consen 207 ----PKDVIVISESGIKTPEDARRLARAGADAVLVGEALMRS 244 (254)
T ss_dssp ----HTTSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred ----ccceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 24688999999999999999999999999999999863
No 196
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=95.71 E-value=0.032 Score=54.15 Aligned_cols=68 Identities=22% Similarity=0.104 Sum_probs=50.4
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCe
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADE 341 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~ 341 (447)
|..+...|..+|.+++. |.. .....+..+.+.+ +.+||++.|||||..++.+++..|||.
T Consensus 141 A~aae~~g~~ivyLe~S-G~~-------------~~~e~I~~v~~~~------~~~pl~vGGGIrs~e~a~~l~~aGAD~ 200 (219)
T cd02812 141 ALAAEYLGMPIVYLEYS-GAY-------------GPPEVVRAVKKVL------GDTPLIVGGGIRSGEQAKEMAEAGADT 200 (219)
T ss_pred HHHHHHcCCeEEEeCCC-CCc-------------CCHHHHHHHHHhc------CCCCEEEeCCCCCHHHHHHHHHcCCCE
Confidence 44566789999999822 210 1234455555432 158999999999999999999999999
Q ss_pred eccChHHH
Q psy10999 342 IGLSTAPL 349 (447)
Q Consensus 342 V~iGt~~L 349 (447)
|.+|+.+.
T Consensus 201 VVVGsai~ 208 (219)
T cd02812 201 IVVGNIVE 208 (219)
T ss_pred EEECchhh
Confidence 99999875
No 197
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=95.66 E-value=0.056 Score=51.98 Aligned_cols=74 Identities=27% Similarity=0.211 Sum_probs=52.1
Q ss_pred HHHHHHHHCCCcEEEEecCCCC-CCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGG-TGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GG-tg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
..|+...+.|+|.+.|---++- ++ .......+.++.+.. .+|++++|||++..|+.+++.+|
T Consensus 32 ~~a~~~~~~g~~~l~v~dl~~~~~g----------~~~~~~~i~~i~~~~-------~~pi~~ggGI~~~ed~~~~~~~G 94 (230)
T TIGR00007 32 EAAKKWEEEGAERIHVVDLDGAKEG----------GPVNLPVIKKIVRET-------GVPVQVGGGIRSLEDVEKLLDLG 94 (230)
T ss_pred HHHHHHHHcCCCEEEEEeCCccccC----------CCCcHHHHHHHHHhc-------CCCEEEeCCcCCHHHHHHHHHcC
Confidence 4556667788887765332221 01 112345566665542 58999999999999999999999
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
||.|.+|+..+-
T Consensus 95 a~~vvlgs~~l~ 106 (230)
T TIGR00007 95 VDRVIIGTAAVE 106 (230)
T ss_pred CCEEEEChHHhh
Confidence 999999987654
No 198
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=95.57 E-value=0.076 Score=52.41 Aligned_cols=93 Identities=8% Similarity=-0.113 Sum_probs=57.8
Q ss_pred HHHHHHHHhC--CCCceEEEEeee---cc---HHH--H-HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHH
Q psy10999 234 ELIYDLKCAN--PNARISVKLVSE---VG---VGV--V-ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 302 (447)
Q Consensus 234 ~~I~~Lr~~~--p~~pI~VKlv~~---~G---i~~--~-A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ 302 (447)
+.+.++++.. .++|++|...+. .+ ... . ++.+.++|||+|-++.. .....+.
T Consensus 123 ~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~~~-----------------~~~~~l~ 185 (258)
T TIGR01949 123 RDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTPYT-----------------GDIDSFR 185 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEeccCC-----------------CCHHHHH
Confidence 4555555431 267877743310 11 111 2 35567899999987521 1234566
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCC--ChH----HHHHHHHcCCCeeccChHHHH
Q psy10999 303 ETHQVLALNNLRSRVVLQADGQIR--TGF----DVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viadGGIr--tg~----Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
++.+.+ ++||.+.|||+ |.. .+..++..||+++.+|+.++.
T Consensus 186 ~~~~~~-------~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~ 232 (258)
T TIGR01949 186 DVVKGC-------PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ 232 (258)
T ss_pred HHHHhC-------CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence 655432 59999999999 544 445556999999999998763
No 199
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=95.55 E-value=0.035 Score=54.25 Aligned_cols=65 Identities=25% Similarity=0.121 Sum_probs=43.7
Q ss_pred HCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 267 KGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 267 ~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
=.|..+|-+....|.- +.+. ..+.++++.+ .++|||+.|||||+.++.+++..|||.|.+|+
T Consensus 151 ~~g~~~iYLEaGSGa~-----------~~v~-~~v~~~~~~~------~~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn 212 (230)
T PF01884_consen 151 YLGMPIIYLEAGSGAY-----------GPVP-EEVIAAVKKL------SDIPLIVGGGIRSPEQAREMAEAGADTIVVGN 212 (230)
T ss_dssp HTT-SEEEEE--TTSS-----------S-HH-HHHHHHHHHS------SSSEEEEESS--SHHHHHHHHCTTSSEEEESC
T ss_pred HhCCCEEEEEeCCCCC-----------CCcc-HHHHHHHHhc------CCccEEEeCCcCCHHHHHHHHHCCCCEEEECC
Confidence 3699999997532321 2222 2233444433 37999999999999999999999999999999
Q ss_pred HHH
Q psy10999 347 APL 349 (447)
Q Consensus 347 ~~L 349 (447)
.+-
T Consensus 213 ~ie 215 (230)
T PF01884_consen 213 AIE 215 (230)
T ss_dssp HHH
T ss_pred EEE
Confidence 874
No 200
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=95.54 E-value=0.11 Score=50.58 Aligned_cols=74 Identities=20% Similarity=0.076 Sum_probs=47.4
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCC------CChHHHHHHH
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQI------RTGFDVVVAA 335 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGI------rtg~Dv~kAl 335 (447)
++.+.++|||+|..+=. +..+ .+...+....+......+..++-|.++||+ ++-.++...+
T Consensus 152 ~ria~e~GaD~vKt~tg-~~~~------------~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i 218 (236)
T PF01791_consen 152 ARIAAELGADFVKTSTG-KPVG------------ATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFI 218 (236)
T ss_dssp HHHHHHTT-SEEEEE-S-SSSC------------SHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHH
T ss_pred HHHHHHhCCCEEEecCC-cccc------------ccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHH
Confidence 44578999999988643 1111 233444444444433222234559999999 9999999999
Q ss_pred HcCC--CeeccChHH
Q psy10999 336 LLGA--DEIGLSTAP 348 (447)
Q Consensus 336 aLGA--d~V~iGt~~ 348 (447)
.+|| -++.+||..
T Consensus 219 ~aGa~~~G~~~Gr~i 233 (236)
T PF01791_consen 219 EAGADRIGTSSGRNI 233 (236)
T ss_dssp HTTHSEEEEEEHHHH
T ss_pred HcCChhHHHHHHHHH
Confidence 9999 666666643
No 201
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=95.52 E-value=0.074 Score=50.39 Aligned_cols=95 Identities=19% Similarity=0.227 Sum_probs=58.8
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEecCCC----CCCCccccccccCCCChHHHHHHHHHHH
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVISGHDG----GTGASSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~VsG~~G----Gtg~a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
+.+..+|+.. +.++ +|.+.-..... .+..+.+.++|+|.++...+ |+|.. ..| ..|.++.
T Consensus 86 ~~~~~l~~~~-~~~~-i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~---------~~~-~~l~~~~--- 150 (203)
T cd00405 86 EYCAQLRARL-GLPV-IKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKT---------FDW-SLLRGLA--- 150 (203)
T ss_pred HHHHHHHhhc-CCcE-EEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcce---------ECh-HHhhccc---
Confidence 3466777654 3344 44332111111 22244567999999987533 22211 122 2333332
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
.++|++++||| |+.++..++..| +++|.+.+.+..
T Consensus 151 ------~~~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~ 186 (203)
T cd00405 151 ------SRKPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVET 186 (203)
T ss_pred ------cCCCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence 25899999999 999999999999 999999998754
No 202
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=95.51 E-value=0.042 Score=54.06 Aligned_cols=47 Identities=15% Similarity=-0.051 Sum_probs=36.9
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHH---HcCCCeeccChHHH
Q psy10999 296 PWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA---LLGADEIGLSTAPL 349 (447)
Q Consensus 296 p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAl---aLGAd~V~iGt~~L 349 (447)
|....+.++.+.. ++|||++||+++-.|+.+.- .+|+++|.+|+++.
T Consensus 180 ~d~~l~~~l~~~~-------~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~ 229 (243)
T TIGR01919 180 PNELLLEVVAART-------DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLY 229 (243)
T ss_pred cCHHHHHHHHhhC-------CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHH
Confidence 4445666665542 69999999999999998764 45999999999864
No 203
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.44 E-value=0.12 Score=52.25 Aligned_cols=88 Identities=18% Similarity=0.129 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 233 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 233 ~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
.+.+..+|+..+. .|+..|+.....+..+.++|||.|.+++.. | +-+.++++.+
T Consensus 193 ~~av~~~r~~~~~----~kIeVEvetleea~eA~~aGaDiImLDnms----------------p--e~l~~av~~~---- 246 (294)
T PRK06978 193 GAALDAAFALNAG----VPVQIEVETLAQLETALAHGAQSVLLDNFT----------------L--DMMREAVRVT---- 246 (294)
T ss_pred HHHHHHHHHhCCC----CcEEEEcCCHHHHHHHHHcCCCEEEECCCC----------------H--HHHHHHHHhh----
Confidence 3456677765443 344456667788899999999999999861 1 3456666553
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
+.++.+.++||| |...+..-...|.|.+.+|...
T Consensus 247 -~~~~~lEaSGGI-t~~ni~~yA~tGVD~IS~galt 280 (294)
T PRK06978 247 -AGRAVLEVSGGV-NFDTVRAFAETGVDRISIGALT 280 (294)
T ss_pred -cCCeEEEEECCC-CHHHHHHHHhcCCCEEEeCccc
Confidence 347899999999 6888888888999999999754
No 204
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=95.44 E-value=0.1 Score=50.09 Aligned_cols=33 Identities=27% Similarity=0.241 Sum_probs=30.9
Q ss_pred ceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 316 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 316 ~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
++|+++.||| |..++..-+..||++|++++.+.
T Consensus 151 ~ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~ 183 (206)
T PRK09140 151 DVPVFAVGGV-TPENLAPYLAAGAAGFGLGSALY 183 (206)
T ss_pred CCeEEEECCC-CHHHHHHHHHCCCeEEEEehHhc
Confidence 5999999999 88999999999999999999874
No 205
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=95.39 E-value=0.079 Score=52.68 Aligned_cols=73 Identities=15% Similarity=0.105 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHC-CCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHH
Q psy10999 257 GVGVVASGVAKG-KAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA 335 (447)
Q Consensus 257 Gi~~~A~~a~~a-GaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAl 335 (447)
.+.+.+..+... ++|+|+|+|.+ ||.+ +...-|.++.+.. .++|+++.||+ |+..|..++
T Consensus 158 ~~~e~a~~~~~~~~aDavivtG~~--TG~~----------~d~~~l~~vr~~~------~~~PvllggGv-t~eNv~e~l 218 (257)
T TIGR00259 158 DLESIALDTVERGLADAVILSGKT--TGTE----------VDLELLKLAKETV------KDTPVLAGSGV-NLENVEELL 218 (257)
T ss_pred CHHHHHHHHHHhcCCCEEEECcCC--CCCC----------CCHHHHHHHHhcc------CCCeEEEECCC-CHHHHHHHH
Confidence 344556655555 49999999974 3321 2334455554432 25899999998 788899998
Q ss_pred HcCCCeeccChHHH
Q psy10999 336 LLGADEIGLSTAPL 349 (447)
Q Consensus 336 aLGAd~V~iGt~~L 349 (447)
.. ||++.+||.|-
T Consensus 219 ~~-adGviVgS~~K 231 (257)
T TIGR00259 219 SI-ADGVIVATTIK 231 (257)
T ss_pred hh-CCEEEECCCcc
Confidence 87 99999999764
No 206
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=95.38 E-value=0.14 Score=57.54 Aligned_cols=100 Identities=16% Similarity=0.057 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+++.++++.-++. +.-+.| |+-...+...+.++|+++|=|-+.+=.| +-+... .-.++...
T Consensus 147 ~~l~~l~~~a~~l--Gme~Lv----Evh~~~el~~a~~~ga~iiGINnRdL~t----------f~vd~~-~t~~L~~~-- 207 (695)
T PRK13802 147 AQLKHLLDLAHEL--GMTVLV----ETHTREEIERAIAAGAKVIGINARNLKD----------LKVDVN-KYNELAAD-- 207 (695)
T ss_pred HHHHHHHHHHHHc--CCeEEE----EeCCHHHHHHHHhCCCCEEEEeCCCCcc----------ceeCHH-HHHHHHhh--
Confidence 4565555555554 444444 4445678889999999999887764322 121111 11111222
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 351 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~a 351 (447)
+.+++.+|+.+||+++.|+..+..+|||+|.+|+.+|.+
T Consensus 208 ---ip~~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~ 246 (695)
T PRK13802 208 ---LPDDVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATA 246 (695)
T ss_pred ---CCCCcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence 234688999999999999999999999999999999875
No 207
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=95.31 E-value=0.049 Score=51.25 Aligned_cols=70 Identities=9% Similarity=-0.015 Sum_probs=50.6
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
...++..+.++|+|+|-+.-. + ..| ...+..+...+ ..+|+++.||| |..++...+..
T Consensus 106 t~~e~~~A~~~Gad~i~~~p~------~------~~g---~~~~~~l~~~~------~~~p~~a~GGI-~~~n~~~~~~~ 163 (190)
T cd00452 106 TPTEIMQALELGADIVKLFPA------E------AVG---PAYIKALKGPF------PQVRFMPTGGV-SLDNAAEWLAA 163 (190)
T ss_pred CHHHHHHHHHCCCCEEEEcCC------c------ccC---HHHHHHHHhhC------CCCeEEEeCCC-CHHHHHHHHHC
Confidence 456778889999999988321 0 011 22333333221 25999999999 99999999999
Q ss_pred CCCeeccChHHH
Q psy10999 338 GADEIGLSTAPL 349 (447)
Q Consensus 338 GAd~V~iGt~~L 349 (447)
||++|++++.+.
T Consensus 164 G~~~v~v~s~i~ 175 (190)
T cd00452 164 GVVAVGGGSLLP 175 (190)
T ss_pred CCEEEEEchhcc
Confidence 999999998764
No 208
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=95.30 E-value=0.21 Score=49.41 Aligned_cols=101 Identities=18% Similarity=0.063 Sum_probs=67.1
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 307 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~ 307 (447)
+.+++.+++...+.. |.-+.|- +-...++..+.++|+++|=|.+.+=.|- -+... ...+....
T Consensus 136 ~~~~l~~l~~~a~~l--Gle~LVE----Vh~~~El~~a~~~ga~iiGINnRdL~t~----------~vd~~-~~~~L~~~ 198 (247)
T PRK13957 136 TPSQIKSFLKHASSL--GMDVLVE----VHTEDEAKLALDCGAEIIGINTRDLDTF----------QIHQN-LVEEVAAF 198 (247)
T ss_pred CHHHHHHHHHHHHHc--CCceEEE----ECCHHHHHHHHhCCCCEEEEeCCCCccc----------eECHH-HHHHHHhh
Confidence 344566666665554 4444444 3456778889999999998877654331 11111 11122222
Q ss_pred HHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHH
Q psy10999 308 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 351 (447)
Q Consensus 308 l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~a 351 (447)
+.+.+.+|+.+||.|+.|+.+...+ ||+|.+|+.+|.+
T Consensus 199 -----ip~~~~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~ 236 (247)
T PRK13957 199 -----LPPNIVKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK 236 (247)
T ss_pred -----CCCCcEEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence 3346789999999999999887776 9999999999864
No 209
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=95.27 E-value=0.15 Score=53.80 Aligned_cols=67 Identities=16% Similarity=0.112 Sum_probs=47.5
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..+..++++|+|+|+|+-..|- +......+.++.+.. .+++ ++.|+|.|..++..++.+||
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~------------~~~~~~~v~~ik~~~------p~~~-vi~g~V~T~e~a~~l~~aGa 216 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGH------------STRIIELVKKIKTKY------PNLD-LIAGNIVTKEAALDLISVGA 216 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCC------------ChhHHHHHHHHHhhC------CCCc-EEEEecCCHHHHHHHHHcCC
Confidence 4567788999999999876532 122334444544432 1233 67899999999999999999
Q ss_pred CeeccC
Q psy10999 340 DEIGLS 345 (447)
Q Consensus 340 d~V~iG 345 (447)
|+|.+|
T Consensus 217 D~I~vG 222 (404)
T PRK06843 217 DCLKVG 222 (404)
T ss_pred CEEEEC
Confidence 998755
No 210
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=95.26 E-value=0.17 Score=52.10 Aligned_cols=98 Identities=16% Similarity=0.174 Sum_probs=62.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHH----HHHHHHHHC--CCcEEEEecCCCCCCCccccccccCCCCh
Q psy10999 224 HDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG----VVASGVAKG--KAEHIVISGHDGGTGASSWTGIKNAGLPW 297 (447)
Q Consensus 224 ~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~----~~A~~a~~a--GaD~I~VsG~~GGtg~a~~~~~~~~G~p~ 297 (447)
|.++++|+|.++++..+... ...+.| .+|+. +.+..+.++ ++|+|+|+=+.|-+- -.
T Consensus 75 Hk~~~~e~~~~~v~~~~~~~-~~~~~v----svG~~~~d~er~~~L~~a~~~~d~iviD~AhGhs~------------~~ 137 (343)
T TIGR01305 75 HKHYSVDEWKAFATNSSPDC-LQNVAV----SSGSSDNDLEKMTSILEAVPQLKFICLDVANGYSE------------HF 137 (343)
T ss_pred eeCCCHHHHHHHHHhhcccc-cceEEE----EeccCHHHHHHHHHHHhcCCCCCEEEEECCCCcHH------------HH
Confidence 66678999987776644321 223333 23443 234556677 599999998766420 12
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 298 ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 298 ~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
+..+..+.+.. .-+.++.|-|.|+.++..++..|||++-+|
T Consensus 138 i~~ik~ir~~~-------p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 138 VEFVKLVREAF-------PEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred HHHHHHHHhhC-------CCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 23333333321 124677788999999999999999998666
No 211
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.21 E-value=0.067 Score=52.29 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=30.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 317 VVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 317 v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
.++|++||+++-.|+.++..+|+++|.+|+++.
T Consensus 190 ~~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly 222 (232)
T PRK13586 190 GLKEYAGGVSSDADLEYLKNVGFDYIIVGMAFY 222 (232)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEehhhh
Confidence 348999999999999999999999999999864
No 212
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=95.15 E-value=0.17 Score=49.13 Aligned_cols=75 Identities=12% Similarity=0.003 Sum_probs=52.3
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCC-hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP-WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p-~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
..+..+.+.|+|+|.++-.- |. + +....| ....+..+.+.+ ++||++-||| +..++..++..|
T Consensus 122 ~~a~~A~~~gaDYv~~Gpv~--t~-t-----K~~~~p~gl~~l~~~~~~~-------~iPvvAIGGI-~~~n~~~~~~~G 185 (221)
T PRK06512 122 HGAMEIGELRPDYLFFGKLG--AD-N-----KPEAHPRNLSLAEWWAEMI-------EIPCIVQAGS-DLASAVEVAETG 185 (221)
T ss_pred HHHHHhhhcCCCEEEECCCC--CC-C-----CCCCCCCChHHHHHHHHhC-------CCCEEEEeCC-CHHHHHHHHHhC
Confidence 45666778999999996542 21 1 111222 223344443322 5999999999 999999999999
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
|++|.+-+.++-
T Consensus 186 A~giAvisai~~ 197 (221)
T PRK06512 186 AEFVALERAVFD 197 (221)
T ss_pred CCEEEEhHHhhC
Confidence 999999988763
No 213
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=95.11 E-value=0.21 Score=49.49 Aligned_cols=100 Identities=24% Similarity=0.147 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+.+.+++..-++. |.-+.|- +-.....+++.++|++.|=|-+.+=.|- ...+-+. ......
T Consensus 143 ~~l~el~~~A~~L--Gm~~LVE----Vh~~eEl~rAl~~ga~iIGINnRdL~tf--------~vdl~~t---~~la~~-- 203 (254)
T COG0134 143 EQLEELVDRAHEL--GMEVLVE----VHNEEELERALKLGAKIIGINNRDLTTL--------EVDLETT---EKLAPL-- 203 (254)
T ss_pred HHHHHHHHHHHHc--CCeeEEE----ECCHHHHHHHHhCCCCEEEEeCCCcchh--------eecHHHH---HHHHhh--
Confidence 3455555555444 4445444 3456778889999999998866532220 0111111 111121
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 351 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~a 351 (447)
+.+++.+|.-+||.|+.|+.+....|||+|.+|+++|.+
T Consensus 204 ---~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~ 242 (254)
T COG0134 204 ---IPKDVILISESGISTPEDVRRLAKAGADAFLVGEALMRA 242 (254)
T ss_pred ---CCCCcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence 345688999999999999999999999999999999863
No 214
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=95.08 E-value=0.25 Score=46.93 Aligned_cols=104 Identities=15% Similarity=0.116 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecC-CCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGH-DGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~-~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
..+.++.+|.. +..+++-+..... .... .....++|+|.+... .|+|+.. +......-+.++.+....
T Consensus 98 ~~~~~~~~~~~--~~~~g~~~~~~t~-~e~~-~~~~~~~d~i~~~~~~~g~tg~~-------~~~~~~~~i~~~~~~~~~ 166 (220)
T PRK05581 98 IHRLLQLIKSA--GIKAGLVLNPATP-LEPL-EDVLDLLDLVLLMSVNPGFGGQK-------FIPEVLEKIRELRKLIDE 166 (220)
T ss_pred HHHHHHHHHHc--CCEEEEEECCCCC-HHHH-HHHHhhCCEEEEEEECCCCCccc-------ccHHHHHHHHHHHHHHHh
Confidence 34556667664 4455553211111 1222 233446898877653 4555421 111122334444443321
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
.++ .++|.++|||.. .++.+++..|||.|.+|++++
T Consensus 167 ~~~--~~~i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~ 202 (220)
T PRK05581 167 RGL--DILIEVDGGINA-DNIKECAEAGADVFVAGSAVF 202 (220)
T ss_pred cCC--CceEEEECCCCH-HHHHHHHHcCCCEEEEChhhh
Confidence 110 155789999999 799998889999999999875
No 215
>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family. This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.
Probab=95.04 E-value=0.32 Score=47.05 Aligned_cols=79 Identities=19% Similarity=0.128 Sum_probs=62.7
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCC
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 340 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd 340 (447)
.|..++++|||+|-. +=|+ ++++|.+....+.++++.++.+|.+ .. |....+|+..++..++.+|+|
T Consensus 114 Qa~~Aa~aGa~yisp--yvgR--------i~d~g~dg~~~v~~~~~~~~~~~~~--tk-IlaAS~r~~~~v~~~~~~G~d 180 (213)
T TIGR00875 114 QALLAAKAGATYVSP--FVGR--------LDDIGGDGMKLIEEVKTIFENHAPD--TE-VIAASVRHPRHVLEAALIGAD 180 (213)
T ss_pred HHHHHHHcCCCEEEe--ecch--------HHHcCCCHHHHHHHHHHHHHHcCCC--CE-EEEeccCCHHHHHHHHHcCCC
Confidence 455678899998844 3355 6778888889999999999887754 44 455679999999999999999
Q ss_pred eeccChHHHHHh
Q psy10999 341 EIGLSTAPLITM 352 (447)
Q Consensus 341 ~V~iGt~~L~al 352 (447)
.|-+.-..+..+
T Consensus 181 ~vTip~~vl~~l 192 (213)
T TIGR00875 181 IATMPLDVMQQL 192 (213)
T ss_pred EEEcCHHHHHHH
Confidence 999988777654
No 216
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=95.04 E-value=0.11 Score=51.26 Aligned_cols=46 Identities=26% Similarity=0.211 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 297 WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 297 ~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
....+.++.+.+ .+||.++|||||-.|+-..+.+||+.|.+||..+
T Consensus 62 n~~~i~~i~~~~-------~~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~ 107 (243)
T TIGR01919 62 NEMMLEEVVKLL-------VVVEELSGGRRDDSSLRAALTGGRARVNGGTAAL 107 (243)
T ss_pred hHHHHHHHHHHC-------CCCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 455677776653 4899999999999999999999999999999754
No 217
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=95.03 E-value=0.11 Score=49.88 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=47.6
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCe
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADE 341 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~ 341 (447)
|..+...|++.|.+.-..|-.. .. ....+.++.+.+ ++|+++.||||+..++.+++..|||.
T Consensus 140 a~aa~~~G~~~i~Le~~sGa~~---------~v--~~e~i~~Vk~~~-------~~Pv~vGGGIrs~e~a~~l~~~GAD~ 201 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGASY---------PV--NPETISLVKKAS-------GIPLIVGGGIRSPEIAYEIVLAGADA 201 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCCCC---------CC--CHHHHHHHHHhh-------CCCEEEeCCCCCHHHHHHHHHcCCCE
Confidence 4455678999998854333210 01 134556665553 58999999999999999998999999
Q ss_pred eccC
Q psy10999 342 IGLS 345 (447)
Q Consensus 342 V~iG 345 (447)
|.+|
T Consensus 202 VVVG 205 (205)
T TIGR01769 202 IVTG 205 (205)
T ss_pred EEeC
Confidence 9886
No 218
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=95.02 E-value=0.33 Score=49.81 Aligned_cols=94 Identities=21% Similarity=0.147 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeec--cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEV--GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETH 305 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~--Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~ 305 (447)
+++++.+.++++|. ++.|-..... .....+..+.++|+|+|+|+-+.|.. ..+...+.+++
T Consensus 68 ~~~~~~~~i~~vk~-----~l~v~~~~~~~~~~~~~~~~l~eagv~~I~vd~~~G~~------------~~~~~~i~~ik 130 (325)
T cd00381 68 SIEEQAEEVRKVKG-----RLLVGAAVGTREDDKERAEALVEAGVDVIVIDSAHGHS------------VYVIEMIKFIK 130 (325)
T ss_pred CHHHHHHHHHHhcc-----CceEEEecCCChhHHHHHHHHHhcCCCEEEEECCCCCc------------HHHHHHHHHHH
Confidence 45666666666652 3333322211 12245667889999999998654321 01233344444
Q ss_pred HHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 306 QVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 306 ~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
+. + ++++|++ |.+.|..++.+++..|||++.+|
T Consensus 131 ~~----~--p~v~Vi~-G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 131 KK----Y--PNVDVIA-GNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HH----C--CCceEEE-CCCCCHHHHHHHHhcCCCEEEEC
Confidence 32 2 2588887 99999999999999999999874
No 219
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=95.02 E-value=0.19 Score=49.85 Aligned_cols=70 Identities=16% Similarity=0.175 Sum_probs=50.6
Q ss_pred HHHHHHH-HHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 259 GVVASGV-AKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 259 ~~~A~~a-~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
.+.++.+ ...++|+|+|+|.. ||. .|...-|.++.+.+ .+||++.+|+ |...|.+-|..
T Consensus 161 ~~~~~~a~~~~~aDaviVtG~~--TG~----------~~~~~~l~~vr~~~-------~~PVlvGSGv-t~~Ni~~~l~~ 220 (254)
T PF03437_consen 161 EEAAKDAVERGGADAVIVTGKA--TGE----------PPDPEKLKRVREAV-------PVPVLVGSGV-TPENIAEYLSY 220 (254)
T ss_pred HHHHHHHHHhcCCCEEEECCcc--cCC----------CCCHHHHHHHHhcC-------CCCEEEecCC-CHHHHHHHHHh
Confidence 3444444 67899999999974 322 24455566776653 3999999998 67888887765
Q ss_pred CCCeeccChHHH
Q psy10999 338 GADEIGLSTAPL 349 (447)
Q Consensus 338 GAd~V~iGt~~L 349 (447)
||++.+||.|-
T Consensus 221 -ADG~IVGS~~K 231 (254)
T PF03437_consen 221 -ADGAIVGSYFK 231 (254)
T ss_pred -CCEEEEeeeee
Confidence 99999999875
No 220
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=95.00 E-value=0.11 Score=51.03 Aligned_cols=72 Identities=13% Similarity=-0.014 Sum_probs=50.9
Q ss_pred HHHHHHHHCCCcEEEEecCCCC-CCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGG-TGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GG-tg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
..|+...+.|+|-+.|---+|. .+ .......+.++.+.+ +||.++|||||-.|+-+.+.+|
T Consensus 34 ~~A~~~~~~ga~~lhivDLd~a~~g----------~~~n~~~i~~i~~~~--------~~v~vGGGIrs~e~~~~~l~~G 95 (241)
T PRK14114 34 ELVEKLIEEGFTLIHVVDLSKAIEN----------SVENLPVLEKLSEFA--------EHIQIGGGIRSLDYAEKLRKLG 95 (241)
T ss_pred HHHHHHHHCCCCEEEEEECCCcccC----------CcchHHHHHHHHhhc--------CcEEEecCCCCHHHHHHHHHCC
Confidence 3466667789997755433321 11 013445566665541 5899999999999999999999
Q ss_pred CCeeccChHHH
Q psy10999 339 ADEIGLSTAPL 349 (447)
Q Consensus 339 Ad~V~iGt~~L 349 (447)
|+.|.+||..+
T Consensus 96 a~rvvigT~a~ 106 (241)
T PRK14114 96 YRRQIVSSKVL 106 (241)
T ss_pred CCEEEECchhh
Confidence 99999999654
No 221
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=94.98 E-value=0.28 Score=50.97 Aligned_cols=102 Identities=20% Similarity=0.132 Sum_probs=62.9
Q ss_pred CCCCHHHHHHHHHHHHHhCC------CCceEEEEeeec--cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCC
Q psy10999 225 DIYSIEDLAELIYDLKCANP------NARISVKLVSEV--GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP 296 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p------~~pI~VKlv~~~--Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p 296 (447)
...++++..+.++++|+.+| ..++.|-..... .-...+..+.++|+|+|+|+...|-+ .+
T Consensus 68 ~~~~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~agvD~ivID~a~g~s--------~~---- 135 (352)
T PF00478_consen 68 RNMSIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVEAGVDVIVIDSAHGHS--------EH---- 135 (352)
T ss_dssp SSSCHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHHTT-SEEEEE-SSTTS--------HH----
T ss_pred CCCCHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHHcCCCEEEccccCccH--------HH----
Confidence 34678888889999986432 224444432211 12345667889999999999876542 10
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 297 WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 297 ~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
....+..+.+. + .+++|| .|.|.|+.-+...+..|||+|=+|
T Consensus 136 ~~~~ik~ik~~---~---~~~~vi-aGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 136 VIDMIKKIKKK---F---PDVPVI-AGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHHH---S---TTSEEE-EEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHh---C---CCceEE-ecccCCHHHHHHHHHcCCCEEEEe
Confidence 12233333332 2 268777 788999999999999999987666
No 222
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=94.89 E-value=0.23 Score=46.73 Aligned_cols=82 Identities=26% Similarity=0.219 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.+.|+.+++.+|++.|+.=.+. ....+..+.++|+|+|+. +++ + .++.++.+.+
T Consensus 42 ~~~~i~~l~~~~~~~~iGag~v~---~~~~~~~a~~~Ga~~i~~----p~~--------~----------~~~~~~~~~~ 96 (190)
T cd00452 42 ALEAIRALRKEFPEALIGAGTVL---TPEQADAAIAAGAQFIVS----PGL--------D----------PEVVKAANRA 96 (190)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCC---CHHHHHHHHHcCCCEEEc----CCC--------C----------HHHHHHHHHc
Confidence 45688999998876555544222 245677889999999963 221 0 1333333332
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
.++++. |+.|..++.+|+.+|||.+.+
T Consensus 97 ----~~~~i~--gv~t~~e~~~A~~~Gad~i~~ 123 (190)
T cd00452 97 ----GIPLLP--GVATPTEIMQALELGADIVKL 123 (190)
T ss_pred ----CCcEEC--CcCCHHHHHHHHHCCCCEEEE
Confidence 356665 888999999999999999987
No 223
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=94.85 E-value=0.13 Score=53.30 Aligned_cols=78 Identities=12% Similarity=-0.090 Sum_probs=53.4
Q ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
..++..+.+.|+|+|.++-. .-|..-|. ........+..+.+.. .+|+++-||| +..++...+..|
T Consensus 250 ~~e~~~A~~~GaDYI~lGPv-f~T~tKp~-----~~~~Gle~l~~~~~~~-------~iPv~AiGGI-~~~ni~~l~~~G 315 (347)
T PRK02615 250 PEEMAKAIAEGADYIGVGPV-FPTPTKPG-----KAPAGLEYLKYAAKEA-------PIPWFAIGGI-DKSNIPEVLQAG 315 (347)
T ss_pred HHHHHHHHHcCCCEEEECCC-cCCCCCCC-----CCCCCHHHHHHHHHhC-------CCCEEEECCC-CHHHHHHHHHcC
Confidence 45677788899999998533 32321111 0112234444444321 5999999999 588999999999
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
|++|.+++.++-
T Consensus 316 a~gVAvisaI~~ 327 (347)
T PRK02615 316 AKRVAVVRAIMG 327 (347)
T ss_pred CcEEEEeHHHhC
Confidence 999999998863
No 224
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=94.83 E-value=0.15 Score=49.80 Aligned_cols=74 Identities=18% Similarity=0.164 Sum_probs=55.2
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCC
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 340 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd 340 (447)
.|+.-.+.|||=++.=--.... +.--+..+.+.++.+.+ -||+-+.|||++-.|+-+.|..|||
T Consensus 35 lA~~Y~e~GADElvFlDItAs~---------~gr~~~~~vv~r~A~~v-------fiPltVGGGI~s~eD~~~ll~aGAD 98 (256)
T COG0107 35 LAKRYNEEGADELVFLDITASS---------EGRETMLDVVERVAEQV-------FIPLTVGGGIRSVEDARKLLRAGAD 98 (256)
T ss_pred HHHHHHHcCCCeEEEEeccccc---------ccchhHHHHHHHHHhhc-------eeeeEecCCcCCHHHHHHHHHcCCC
Confidence 5666778999966543221110 00125566777777765 5999999999999999999999999
Q ss_pred eeccChHHHH
Q psy10999 341 EIGLSTAPLI 350 (447)
Q Consensus 341 ~V~iGt~~L~ 350 (447)
-|.+.|+.+.
T Consensus 99 KVSINsaAv~ 108 (256)
T COG0107 99 KVSINSAAVK 108 (256)
T ss_pred eeeeChhHhc
Confidence 9999998875
No 225
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=94.81 E-value=0.039 Score=53.65 Aligned_cols=71 Identities=23% Similarity=0.159 Sum_probs=48.4
Q ss_pred HHHHHHHHCCCcEEEE---ecCC-CCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHH
Q psy10999 260 VVASGVAKGKAEHIVI---SGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAA 335 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~V---sG~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAl 335 (447)
..|+...+.|+|-+.| ++.. |. .+....+.++.+.+ .+||+++||||+-.|+.+.+
T Consensus 33 ~~a~~~~~~g~~~l~ivDLdaa~~g~-------------~~n~~~i~~i~~~~-------~~~i~vgGGIrs~ed~~~ll 92 (229)
T PF00977_consen 33 EVAKAFNEQGADELHIVDLDAAKEGR-------------GSNLELIKEIAKET-------GIPIQVGGGIRSIEDAERLL 92 (229)
T ss_dssp HHHHHHHHTT-SEEEEEEHHHHCCTH-------------HHHHHHHHHHHHHS-------SSEEEEESSE-SHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEEEEccCcccCc-------------hhHHHHHHHHHhcC-------CccEEEeCccCcHHHHHHHH
Confidence 3455556778886644 4432 21 12445566665542 49999999999999999999
Q ss_pred HcCCCeeccChHHHH
Q psy10999 336 LLGADEIGLSTAPLI 350 (447)
Q Consensus 336 aLGAd~V~iGt~~L~ 350 (447)
.+||+.|.+||..+.
T Consensus 93 ~~Ga~~Vvigt~~~~ 107 (229)
T PF00977_consen 93 DAGADRVVIGTEALE 107 (229)
T ss_dssp HTT-SEEEESHHHHH
T ss_pred HhCCCEEEeChHHhh
Confidence 999999999998764
No 226
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.79 E-value=0.025 Score=55.08 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=32.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 316 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 316 ~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
++|||++||+++..|+.++..+|+++|.+|+++..
T Consensus 182 ~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~ 216 (228)
T PRK04128 182 DEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYE 216 (228)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhc
Confidence 69999999999999999999999999999998754
No 227
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=94.72 E-value=0.29 Score=53.00 Aligned_cols=229 Identities=21% Similarity=0.230 Sum_probs=121.6
Q ss_pred cceeecCCCcccCcHHHHHHHHHHHHHhCCce-eecCCCCChhhhhccCCCCCCCeEEeCCCCccccccccceeeccccc
Q psy10999 79 KRFATGAMSFGSISIEAHTTLAKAMNKIGAKS-NTGEGGENPERYLSSGDENQRSAIKQGKLYPKTYCFLSSLFTDLFPV 157 (447)
Q Consensus 79 ~Pf~iaaMs~G~ls~ea~~aLA~AA~~~G~~~-~sGeg~~~~e~~~~~~~~~~~~~i~Q~~ly~~~~~~~~lv~t~d~p~ 157 (447)
.|+++++|+=..+.++ +..||+.+|-.. +-|-|..++|.+... -..+.-|
T Consensus 35 ~PillaGMTPtTVdp~----ivAAaAnAGhwaELAGGGq~t~e~~~~~----i~ql~~~--------------------- 85 (717)
T COG4981 35 SPILLAGMTPTTVDPD----IVAAAANAGHWAELAGGGQVTEEIFTNA----IEQLVSL--------------------- 85 (717)
T ss_pred CCeeecCCCCCcCCHH----HHHHHhcCCceeeecCCcccCHHHHHHH----HHHHHhc---------------------
Confidence 4899999999888888 666777777775 777777788776421 1111222
Q ss_pred cccccccCC-CCCChHhhccccccccccccccCCCCCCCCCCCcccHHHHhhcCCC-CcccccCCCCCCCCCCHHHHHHH
Q psy10999 158 YGLPVASGR-FGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSV-PGVGLISPPPHHDIYSIEDLAEL 235 (447)
Q Consensus 158 ~~~rv~s~r-fGv~~~~l~~a~~ieik~~QgAkPg~gg~l~~~kv~~~ia~~r~~~-~g~~lisp~~~~~~~s~edl~~~ 235 (447)
+..|| ++++.-|+ +..+.++. ++++++ +.++|... +-..+..-. .|.+.|+--++
T Consensus 86 ----lepG~t~qfN~ifl-dpylw~~q------------ig~krL---v~kara~G~~I~gvvIsA---GIP~le~A~El 142 (717)
T COG4981 86 ----LEPGRTAQFNSIFL-DPYLWKLQ------------IGGKRL---VQKARASGAPIDGVVISA---GIPSLEEAVEL 142 (717)
T ss_pred ----cCCCccceeeEEEe-chHHhhhc------------CChHHH---HHHHHhcCCCcceEEEec---CCCcHHHHHHH
Confidence 11222 22222111 11111111 222222 33333221 111111111 23455666678
Q ss_pred HHHHHHhCCCCc-eEEEEeeeccHHH-H--HHHHHHCCCc---EEEEecCCCCCCCccccccccCCCChHHHHHHHHHHH
Q psy10999 236 IYDLKCANPNAR-ISVKLVSEVGVGV-V--ASGVAKGKAE---HIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 236 I~~Lr~~~p~~p-I~VKlv~~~Gi~~-~--A~~a~~aGaD---~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
|++|-.. +.| |..| .|.-+ + ....+++-+. ++.+.|.-+|+|-+- .|.- +.|......+
T Consensus 143 I~~L~~~--G~~yv~fK----PGtIeqI~svi~IAka~P~~pIilq~egGraGGHHSw----eDld----~llL~tYs~l 208 (717)
T COG4981 143 IEELGDD--GFPYVAFK----PGTIEQIRSVIRIAKANPTFPIILQWEGGRAGGHHSW----EDLD----DLLLATYSEL 208 (717)
T ss_pred HHHHhhc--CceeEEec----CCcHHHHHHHHHHHhcCCCCceEEEEecCccCCccch----hhcc----cHHHHHHHHH
Confidence 8888553 333 4445 23222 1 1234455443 445555445555432 1211 2344445555
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHH------H-----cCCCeeccChHHHHHhcccc---hh-------------ccc
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAA------L-----LGADEIGLSTAPLITMGCTM---MR-------------KCH 361 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAl------a-----LGAd~V~iGt~~L~algc~~---~~-------------~c~ 361 (447)
+ -+++|.|++-|||.++.|.+--| + +=-|++.+||+.|++-++.- .. .-.
T Consensus 209 R---~~~NIvl~vGgGiGtp~~aa~YLTGeWSt~~g~P~MP~DGiLvGtaaMatKEatTSp~vK~~lv~t~Gvdd~~W~~ 285 (717)
T COG4981 209 R---SRDNIVLCVGGGIGTPDDAAPYLTGEWSTAYGFPPMPFDGILVGTAAMATKEATTSPAVKEALVATQGVDDDEWEG 285 (717)
T ss_pred h---cCCCEEEEecCCcCChhhcccccccchhhhcCCCCCCcceeEechhHHhhhhccCCHHHHHHHhhCCCCCchhcee
Confidence 4 25689999999999999986433 3 33589999999999754432 12 223
Q ss_pred CCCCcccccccCHHH
Q psy10999 362 LNTCPVGIATQDPEL 376 (447)
Q Consensus 362 ~~~cP~giat~~~~l 376 (447)
++.-|+||++-..+|
T Consensus 286 ~g~a~~Gm~s~rSqL 300 (717)
T COG4981 286 TGKAPGGMASVRSQL 300 (717)
T ss_pred cCCCCCceeeehhhh
Confidence 567788988875544
No 228
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=94.66 E-value=0.17 Score=49.29 Aligned_cols=65 Identities=26% Similarity=0.189 Sum_probs=47.5
Q ss_pred CCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChH
Q psy10999 268 GKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 347 (447)
Q Consensus 268 aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~ 347 (447)
.|..+|-+.-.+|... ..+ ...+..+.+.+ +++||++.||||+..++.+++..|||.|.+|+.
T Consensus 148 ~g~~~vYlE~gs~~g~----------~v~-~e~i~~v~~~~------~~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~ 210 (223)
T TIGR01768 148 LGMPIIYLEAGSGAPE----------PVP-PELVAEVKKVL------DKARLFVGGGIRSVEKAREMAEAGADTIVTGNV 210 (223)
T ss_pred cCCcEEEEEecCCCCC----------CcC-HHHHHHHHHHc------CCCCEEEecCCCCHHHHHHHHHcCCCEEEECcH
Confidence 6888898875433210 112 23455555542 259999999999999999999999999999997
Q ss_pred HH
Q psy10999 348 PL 349 (447)
Q Consensus 348 ~L 349 (447)
+.
T Consensus 211 ~~ 212 (223)
T TIGR01768 211 IE 212 (223)
T ss_pred Hh
Confidence 65
No 229
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=94.58 E-value=0.16 Score=49.60 Aligned_cols=73 Identities=19% Similarity=0.090 Sum_probs=50.7
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..|+...+.|+|-++|---++-.+ ..+....+.++.+.. -.||.++|||||-.|+-+.+.+||
T Consensus 34 ~~a~~~~~~ga~~lhivDLd~a~~----------~~~n~~~i~~i~~~~-------~~~v~vGGGIrs~e~~~~~l~~Ga 96 (232)
T PRK13586 34 EIASKLYNEGYTRIHVVDLDAAEG----------VGNNEMYIKEISKIG-------FDWIQVGGGIRDIEKAKRLLSLDV 96 (232)
T ss_pred HHHHHHHHCCCCEEEEEECCCcCC----------CcchHHHHHHHHhhC-------CCCEEEeCCcCCHHHHHHHHHCCC
Confidence 345666678888775544433211 113345555555421 248999999999999999999999
Q ss_pred CeeccChHHH
Q psy10999 340 DEIGLSTAPL 349 (447)
Q Consensus 340 d~V~iGt~~L 349 (447)
+.|.+||..+
T Consensus 97 ~kvvigt~a~ 106 (232)
T PRK13586 97 NALVFSTIVF 106 (232)
T ss_pred CEEEECchhh
Confidence 9999999764
No 230
>PRK01362 putative translaldolase; Provisional
Probab=94.33 E-value=0.57 Score=45.37 Aligned_cols=79 Identities=18% Similarity=0.134 Sum_probs=61.9
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCC
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 340 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd 340 (447)
.|..++++|+|+|-. +=|+ ++++|.+....+.++++.+..++.. . -+....+|+..++..++.+|||
T Consensus 114 Qa~~Aa~aGa~yisp--yvgR--------i~d~g~dg~~~i~~~~~~~~~~~~~--t-kilaAS~r~~~~v~~~~~~G~d 180 (214)
T PRK01362 114 QALLAAKAGATYVSP--FVGR--------LDDIGTDGMELIEDIREIYDNYGFD--T-EIIAASVRHPMHVLEAALAGAD 180 (214)
T ss_pred HHHHHHhcCCcEEEe--ecch--------HhhcCCCHHHHHHHHHHHHHHcCCC--c-EEEEeecCCHHHHHHHHHcCCC
Confidence 345677899998844 3355 6788888889999999999877743 3 4456679999999999999999
Q ss_pred eeccChHHHHHh
Q psy10999 341 EIGLSTAPLITM 352 (447)
Q Consensus 341 ~V~iGt~~L~al 352 (447)
.+-+.-..+..+
T Consensus 181 ~iTi~~~vl~~l 192 (214)
T PRK01362 181 IATIPYKVIKQL 192 (214)
T ss_pred EEecCHHHHHHH
Confidence 998887776654
No 231
>PRK08227 autoinducer 2 aldolase; Validated
Probab=94.30 E-value=0.28 Score=48.98 Aligned_cols=89 Identities=16% Similarity=0.084 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeecc---------HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVG---------VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELG 300 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~G---------i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~ 300 (447)
+++.+.+++- +.| +.|+++ +. ..| +...+..+++.|||+|.+. + | .+.
T Consensus 127 ~~l~~v~~ea-~~~-G~Plla-~~-prG~~~~~~~~~ia~aaRiaaELGADiVK~~-y-----------------~-~~~ 183 (264)
T PRK08227 127 KNIIQLVDAG-LRY-GMPVMA-VT-AVGKDMVRDARYFSLATRIAAEMGAQIIKTY-Y-----------------V-EEG 183 (264)
T ss_pred HHHHHHHHHH-HHh-CCcEEE-Ee-cCCCCcCchHHHHHHHHHHHHHHcCCEEecC-C-----------------C-HHH
Confidence 3444333333 335 789887 33 222 1123456789999999872 2 1 155
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCCCChH-H----HHHHHHcCCCeeccChHH
Q psy10999 301 VAETHQVLALNNLRSRVVLQADGQIRTGF-D----VVVAALLGADEIGLSTAP 348 (447)
Q Consensus 301 L~ev~~~l~~~glr~~v~viadGGIrtg~-D----v~kAlaLGAd~V~iGt~~ 348 (447)
+.++++.+ .+||+++||=++.. | +..|+..||.+|.+||=.
T Consensus 184 f~~vv~a~-------~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNI 229 (264)
T PRK08227 184 FERITAGC-------PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNI 229 (264)
T ss_pred HHHHHHcC-------CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhh
Confidence 77777753 69999999999643 2 346889999999999953
No 232
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=94.27 E-value=0.38 Score=42.99 Aligned_cols=74 Identities=18% Similarity=0.141 Sum_probs=55.2
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
....++.+.+.++|+|.+|+..+. +...++++.+.|++.|.. +++|++ ||.....|.....++
T Consensus 42 ~e~~v~aa~e~~adii~iSsl~~~---------------~~~~~~~~~~~L~~~g~~-~i~viv-GG~~~~~~~~~l~~~ 104 (132)
T TIGR00640 42 PEEIARQAVEADVHVVGVSSLAGG---------------HLTLVPALRKELDKLGRP-DILVVV-GGVIPPQDFDELKEM 104 (132)
T ss_pred HHHHHHHHHHcCCCEEEEcCchhh---------------hHHHHHHHHHHHHhcCCC-CCEEEE-eCCCChHhHHHHHHC
Confidence 345677888999999999988653 345678888999888754 677766 666667889999999
Q ss_pred CCCee-ccChHH
Q psy10999 338 GADEI-GLSTAP 348 (447)
Q Consensus 338 GAd~V-~iGt~~ 348 (447)
|.|.+ ..||+.
T Consensus 105 Gvd~~~~~gt~~ 116 (132)
T TIGR00640 105 GVAEIFGPGTPI 116 (132)
T ss_pred CCCEEECCCCCH
Confidence 99865 344443
No 233
>PRK12653 fructose-6-phosphate aldolase; Reviewed
Probab=94.17 E-value=0.89 Score=44.23 Aligned_cols=78 Identities=18% Similarity=0.105 Sum_probs=57.7
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCe
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADE 341 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~ 341 (447)
|..++++||++|-. +=|+ +++.|......+.++++.++.++. +..| ....+|+..++..++.+|||.
T Consensus 117 a~~Aa~aGa~yIsp--yvgR--------~~~~g~dg~~~i~~i~~~~~~~~~--~tkI-LaAS~r~~~~v~~~~~~G~d~ 183 (220)
T PRK12653 117 GLLSALAGAEYVAP--YVNR--------IDAQGGSGIQTVTDLQQLLKMHAP--QAKV-LAASFKTPRQALDCLLAGCES 183 (220)
T ss_pred HHHHHhcCCcEEEe--ecCh--------HhhcCCChHHHHHHHHHHHHhcCC--CcEE-EEEecCCHHHHHHHHHcCCCE
Confidence 34567899998744 3344 556677777788888888876554 3434 455699999999999999999
Q ss_pred eccChHHHHHh
Q psy10999 342 IGLSTAPLITM 352 (447)
Q Consensus 342 V~iGt~~L~al 352 (447)
+-+.-..+..+
T Consensus 184 vTip~~vl~~l 194 (220)
T PRK12653 184 ITLPLDVAQQM 194 (220)
T ss_pred EECCHHHHHHH
Confidence 98888777654
No 234
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=94.16 E-value=0.17 Score=49.03 Aligned_cols=68 Identities=21% Similarity=0.032 Sum_probs=47.2
Q ss_pred HHHHHHHHCCCcEEEE---ecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 260 VVASGVAKGKAEHIVI---SGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~V---sG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
..|+...+.|+|-+.| ++..|+ .+....+.++.+. +|+.++|||||-.|+.+.+.
T Consensus 40 ~~a~~~~~~g~~~l~ivDLd~~~~~-------------~~n~~~i~~i~~~---------~~v~vgGGirs~e~~~~~~~ 97 (221)
T TIGR00734 40 DAAKVIEEIGARFIYIADLDRIVGL-------------GDNFSLLSKLSKR---------VELIADCGVRSPEDLETLPF 97 (221)
T ss_pred HHHHHHHHcCCCEEEEEEcccccCC-------------cchHHHHHHHHhh---------CcEEEcCccCCHHHHHHHHh
Confidence 3455566788887654 444322 1234555555542 58999999999999988865
Q ss_pred --cCCCeeccChHHH
Q psy10999 337 --LGADEIGLSTAPL 349 (447)
Q Consensus 337 --LGAd~V~iGt~~L 349 (447)
.||+.|.+||..+
T Consensus 98 ~l~~a~rvvigT~a~ 112 (221)
T TIGR00734 98 TLEFASRVVVATETL 112 (221)
T ss_pred hhccceEEeecChhh
Confidence 2799999999765
No 235
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=94.09 E-value=0.54 Score=48.85 Aligned_cols=116 Identities=11% Similarity=0.021 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHC-CCcE--EEEecCCCCC---CC-ccc---cccccCCCChHHH
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKG-KAEH--IVISGHDGGT---GA-SSW---TGIKNAGLPWELG 300 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~a-GaD~--I~VsG~~GGt---g~-a~~---~~~~~~G~p~~~~ 300 (447)
++.+.+..+++..|+.++++=+=-.......|..++++ |.|. |.+|-++. . .. +.. .....-|. ....
T Consensus 188 ~~~~A~~a~~~~~Pe~~~ivlVD~~~d~~~~al~~a~~~g~~l~gVRlDs~gd-l~DK~~~~~~~~~~~~~~~G~-~~~l 265 (352)
T PRK07188 188 DVVEACKAYHKTFPEDELIALVDYNNDVITDSLKVAREFGDKLKGVRVDTSKN-MIDKYFIRHPEVLGTFDPRGV-NPEL 265 (352)
T ss_pred cHHHHHHHHHHHCCCCCeEEEEecCcccHHHHHHHHHHhCCCccEEEeCCcch-Hhhhhcccccccccccccccc-cHHH
Confidence 45567888888888765544321001134556666666 8888 88875411 1 00 000 00011233 3467
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC--CCeeccChHHHH
Q psy10999 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG--ADEIGLSTAPLI 350 (447)
Q Consensus 301 L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG--Ad~V~iGt~~L~ 350 (447)
+.++++.|++.|.. ++.|+++||| +...|..-...| .|.+++||.+.-
T Consensus 266 ~~~vr~~Ld~~g~~-~vkI~aSgGi-ne~~I~~~~~~g~piD~~GVGt~l~~ 315 (352)
T PRK07188 266 IKALRKALDENGGK-HVKIIVSSGF-DAKKIREFEAQNVPVDIYGVGSSLLK 315 (352)
T ss_pred HHHHHHHHhhCCCC-CcEEEEeCCC-CHHHHHHHHHcCCCccEEecCccccc
Confidence 88899999988854 7999999999 778887777889 599999997653
No 236
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=94.04 E-value=0.48 Score=50.86 Aligned_cols=99 Identities=15% Similarity=0.042 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+++.++++.-++. +.-..| |+-...++..+.++|++.|=|-+.+=.|- .-+ +-+. .+....
T Consensus 146 ~~l~~l~~~a~~l--Gl~~lv----Evh~~~El~~al~~~a~iiGiNnRdL~t~------~vd--~~~~---~~l~~~-- 206 (454)
T PRK09427 146 EQYRQLAAVAHSL--NMGVLT----EVSNEEELERAIALGAKVIGINNRNLRDL------SID--LNRT---RELAPL-- 206 (454)
T ss_pred HHHHHHHHHHHHc--CCcEEE----EECCHHHHHHHHhCCCCEEEEeCCCCccc------eEC--HHHH---HHHHhh--
Confidence 4565555555554 444434 44456788899999999998877643321 111 1111 111122
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHH
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 351 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~a 351 (447)
+.+++.+++.+||.|+.|+..+. -|||+|.+|+.+|.+
T Consensus 207 ---ip~~~~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~~ 244 (454)
T PRK09427 207 ---IPADVIVISESGIYTHAQVRELS-PFANGFLIGSSLMAE 244 (454)
T ss_pred ---CCCCcEEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcCC
Confidence 34568899999999999998865 489999999999976
No 237
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=93.97 E-value=0.88 Score=42.54 Aligned_cols=89 Identities=18% Similarity=0.102 Sum_probs=63.0
Q ss_pred HHHHHHHHhCCCCceEE--EEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 234 ELIYDLKCANPNARISV--KLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~V--Klv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.|+.+|+..++.|+.+ |+.. ..-..++.+.++|+|+|++-+..+ + ..+.++.+.++++
T Consensus 42 ~~i~~i~~~~~~~~i~~~~~v~~--~~~~~~~~~~~aGad~i~~h~~~~---------------~--~~~~~~i~~~~~~ 102 (202)
T cd04726 42 EAVRALREAFPDKIIVADLKTAD--AGALEAEMAFKAGADIVTVLGAAP---------------L--STIKKAVKAAKKY 102 (202)
T ss_pred HHHHHHHHHCCCCEEEEEEEecc--ccHHHHHHHHhcCCCEEEEEeeCC---------------H--HHHHHHHHHHHHc
Confidence 57888888777888877 5332 112456788999999999865311 1 2244555555554
Q ss_pred CCCCceEEEEc-CCCCChHHHHHHHHcCCCeeccC
Q psy10999 312 NLRSRVVLQAD-GQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 312 glr~~v~viad-GGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
| ++++++ =+..|+.++.+++.+|+|.+.+.
T Consensus 103 g----~~~~v~~~~~~t~~e~~~~~~~~~d~v~~~ 133 (202)
T cd04726 103 G----KEVQVDLIGVEDPEKRAKLLKLGVDIVILH 133 (202)
T ss_pred C----CeEEEEEeCCCCHHHHHHHHHCCCCEEEEc
Confidence 4 567765 78889999999999999998875
No 238
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.91 E-value=0.29 Score=47.03 Aligned_cols=90 Identities=16% Similarity=0.046 Sum_probs=60.2
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.+.|+.|++.+|++-|++-.|. ....++.+.++|++||+--+. -+++.+.+.++
T Consensus 42 a~~~I~~l~~~~~~~~vGAGTVl---~~e~a~~ai~aGA~FivSP~~----------------------~~~vi~~a~~~ 96 (201)
T PRK06015 42 ALDAIRAVAAEVEEAIVGAGTIL---NAKQFEDAAKAGSRFIVSPGT----------------------TQELLAAANDS 96 (201)
T ss_pred HHHHHHHHHHHCCCCEEeeEeCc---CHHHHHHHHHcCCCEEECCCC----------------------CHHHHHHHHHc
Confidence 45789999988877555444322 345788899999999964321 12344444433
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCee------cc-ChHHHHHh
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEI------GL-STAPLITM 352 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V------~i-Gt~~L~al 352 (447)
+ ++ .-=|..|+.++..|+.+||+.| .+ |..++.++
T Consensus 97 ~----i~--~iPG~~TptEi~~A~~~Ga~~vK~FPa~~~GG~~yikal 138 (201)
T PRK06015 97 D----VP--LLPGAATPSEVMALREEGYTVLKFFPAEQAGGAAFLKAL 138 (201)
T ss_pred C----CC--EeCCCCCHHHHHHHHHCCCCEEEECCchhhCCHHHHHHH
Confidence 3 43 4569999999999999999965 34 35555554
No 239
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=93.85 E-value=0.33 Score=50.08 Aligned_cols=105 Identities=13% Similarity=0.026 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHC-CCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKG-KAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~a-GaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
+++.++++.-++. |.-+.| |+-...+...+.++ |++.|=|-|.+=.|- .-| +-+..-|.....
T Consensus 217 ~~L~~l~~~A~~L--Gme~LV----EVH~~~ElerAl~~~ga~iIGINNRdL~Tf------~vD--l~~t~~L~~~~~-- 280 (338)
T PLN02460 217 LDIKYMLKICKSL--GMAALI----EVHDEREMDRVLGIEGVELIGINNRSLETF------EVD--ISNTKKLLEGER-- 280 (338)
T ss_pred HHHHHHHHHHHHc--CCeEEE----EeCCHHHHHHHHhcCCCCEEEEeCCCCCcc------eEC--HHHHHHHhhhcc--
Confidence 4555555554443 444444 44456777888997 999998877643331 111 111111211000
Q ss_pred HhcCC-CCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHH
Q psy10999 309 ALNNL-RSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 351 (447)
Q Consensus 309 ~~~gl-r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~a 351 (447)
..-+ .+++.+++.+||.|+.|+......|||+|.+|..+|.+
T Consensus 281 -~~~i~~~~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~ 323 (338)
T PLN02460 281 -GEQIREKGIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ 323 (338)
T ss_pred -ccccCCCCeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence 0012 13577899999999999999999999999999999863
No 240
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=93.83 E-value=0.79 Score=47.50 Aligned_cols=104 Identities=13% Similarity=0.061 Sum_probs=68.4
Q ss_pred HHHHHHHHHhCCC-CceEEEEeeeccHHHHHHHHHHC---CCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHH
Q psy10999 233 AELIYDLKCANPN-ARISVKLVSEVGVGVVASGVAKG---KAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 233 ~~~I~~Lr~~~p~-~pI~VKlv~~~Gi~~~A~~a~~a---GaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
.+.++..|+..|. .++.|-+-.......+|..+.+. |+|+|.+|+.+-. .| -...++..+.+.+
T Consensus 187 ~~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~-----------~g-~l~~~v~~vr~~l 254 (343)
T PRK08662 187 VEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSR-----------RG-NFRKIVREVRWTL 254 (343)
T ss_pred HHHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCC-----------Cc-cHHHHHHHHHHHH
Confidence 4568888888773 45554422211112445555555 8999999997521 01 1334555666677
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHH
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 351 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~a 351 (447)
++.|.. ++.|.+|||| |...+..-... .|.+++|+.+..+
T Consensus 255 d~~g~~-~v~IeaSGgI-~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 255 DIRGYE-HVKIFVSGGL-DPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred HhcCCC-CeEEEEeCCC-CHHHHHHHHHh-CCEEEcCccccCC
Confidence 666643 5899999999 78888777777 9999999977654
No 241
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=93.74 E-value=0.25 Score=45.97 Aligned_cols=75 Identities=17% Similarity=0.019 Sum_probs=48.0
Q ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
...+..+.+.|+|+|.++----.+. -.+........+.++.+.. ++||++-||| |..++..+..+|
T Consensus 105 ~~e~~~a~~~g~dYv~~gpvf~T~s------k~~~~~~g~~~l~~~~~~~-------~~pv~AlGGI-~~~~i~~l~~~G 170 (180)
T PF02581_consen 105 LEEAREAEELGADYVFLGPVFPTSS------KPGAPPLGLDGLREIARAS-------PIPVYALGGI-TPENIPELREAG 170 (180)
T ss_dssp HHHHHHHHHCTTSEEEEETSS--SS------SSS-TTCHHHHHHHHHHHT-------SSCEEEESS---TTTHHHHHHTT
T ss_pred HHHHHHhhhcCCCEEEECCccCCCC------CccccccCHHHHHHHHHhC-------CCCEEEEcCC-CHHHHHHHHHcC
Confidence 3447788899999999965422211 0111112334455555442 5999999999 899999999999
Q ss_pred CCeeccChH
Q psy10999 339 ADEIGLSTA 347 (447)
Q Consensus 339 Ad~V~iGt~ 347 (447)
|++|.+-++
T Consensus 171 a~gvAvi~a 179 (180)
T PF02581_consen 171 ADGVAVISA 179 (180)
T ss_dssp -SEEEESHH
T ss_pred CCEEEEEee
Confidence 999987654
No 242
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=93.71 E-value=1.6 Score=42.69 Aligned_cols=105 Identities=21% Similarity=0.196 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCC-CCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGG-TGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GG-tg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
+...|..+|+. +...+|-+-+.+.+......+. -+|.|.|=..+-| +|.. ++ .....-+.++++.+.+
T Consensus 97 ~~~~i~~Ik~~--G~kaGlalnP~T~~~~l~~~l~--~vD~VLvMsV~PGf~GQ~---fi----~~~l~KI~~lr~~~~~ 165 (229)
T PRK09722 97 AFRLIDEIRRA--GMKVGLVLNPETPVESIKYYIH--LLDKITVMTVDPGFAGQP---FI----PEMLDKIAELKALRER 165 (229)
T ss_pred HHHHHHHHHHc--CCCEEEEeCCCCCHHHHHHHHH--hcCEEEEEEEcCCCcchh---cc----HHHHHHHHHHHHHHHh
Confidence 44567788876 5566666555444444333332 3687754322221 1111 11 1234445566666655
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
+++ ++.|.+||||. ..-+.+....|||.+.+|+..++
T Consensus 166 ~~~--~~~IeVDGGI~-~~~i~~~~~aGad~~V~Gss~iF 202 (229)
T PRK09722 166 NGL--EYLIEVDGSCN-QKTYEKLMEAGADVFIVGTSGLF 202 (229)
T ss_pred cCC--CeEEEEECCCC-HHHHHHHHHcCCCEEEEChHHHc
Confidence 543 48899999998 55777999999999999987665
No 243
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=93.65 E-value=0.1 Score=49.81 Aligned_cols=73 Identities=16% Similarity=0.084 Sum_probs=52.4
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
....|+...++|||.|.|---++-.+. ...-+..+.+.. ++||+.-|+|++..++-.++..
T Consensus 33 ~~~~A~~~~~~GA~~l~v~~~~~~~~g------------~~~~~~~i~~~v-------~iPi~~~~~i~~~~~v~~~~~~ 93 (217)
T cd00331 33 PVEIAKAYEKAGAAAISVLTEPKYFQG------------SLEDLRAVREAV-------SLPVLRKDFIIDPYQIYEARAA 93 (217)
T ss_pred HHHHHHHHHHcCCCEEEEEeCccccCC------------CHHHHHHHHHhc-------CCCEEECCeecCHHHHHHHHHc
Confidence 445678888999999987544333211 112344444432 5999999999999999999999
Q ss_pred CCCeeccChHHH
Q psy10999 338 GADEIGLSTAPL 349 (447)
Q Consensus 338 GAd~V~iGt~~L 349 (447)
|||+|.++...+
T Consensus 94 Gad~v~l~~~~~ 105 (217)
T cd00331 94 GADAVLLIVAAL 105 (217)
T ss_pred CCCEEEEeeccC
Confidence 999999877543
No 244
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=93.65 E-value=0.24 Score=49.45 Aligned_cols=69 Identities=9% Similarity=-0.012 Sum_probs=49.2
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..|+.-.+.|++.++|-=-+||.. -....+.++.+ + .+||.+-||||+ .++-+.+.+||
T Consensus 47 ~~A~~~~~~Ga~~lHvVDLdgg~~------------~n~~~i~~i~~-~-------~~~vqvGGGIR~-e~i~~~l~~Ga 105 (262)
T PLN02446 47 EFAEMYKRDGLTGGHVIMLGADDA------------SLAAALEALRA-Y-------PGGLQVGGGVNS-ENAMSYLDAGA 105 (262)
T ss_pred HHHHHHHHCCCCEEEEEECCCCCc------------ccHHHHHHHHh-C-------CCCEEEeCCccH-HHHHHHHHcCC
Confidence 456666778888775543333221 11345555554 2 489999999997 99999999999
Q ss_pred CeeccChHHH
Q psy10999 340 DEIGLSTAPL 349 (447)
Q Consensus 340 d~V~iGt~~L 349 (447)
+.|.+||.++
T Consensus 106 ~rViigT~Av 115 (262)
T PLN02446 106 SHVIVTSYVF 115 (262)
T ss_pred CEEEEchHHH
Confidence 9999999765
No 245
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=93.56 E-value=1.1 Score=43.30 Aligned_cols=80 Identities=18% Similarity=0.007 Sum_probs=56.6
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
....+..+.+.|+|+|.+.-- -.|.. -.+........|..+.+.. .+|+++-||| +...+...+..
T Consensus 113 ~~eea~~A~~~g~DYv~~Gpi-fpT~t-----K~~~~~~G~~~l~~~~~~~-------~iP~vAIGGi-~~~nv~~v~~~ 178 (211)
T COG0352 113 DLEEALEAEELGADYVGLGPI-FPTST-----KPDAPPLGLEGLREIRELV-------NIPVVAIGGI-NLENVPEVLEA 178 (211)
T ss_pred CHHHHHHHHhcCCCEEEECCc-CCCCC-----CCCCCccCHHHHHHHHHhC-------CCCEEEEcCC-CHHHHHHHHHh
Confidence 446778888999999988333 33321 1222222445566555542 4999999999 67889999999
Q ss_pred CCCeeccChHHHHH
Q psy10999 338 GADEIGLSTAPLIT 351 (447)
Q Consensus 338 GAd~V~iGt~~L~a 351 (447)
||++|.+-++++.+
T Consensus 179 Ga~gVAvvsai~~a 192 (211)
T COG0352 179 GADGVAVVSAITSA 192 (211)
T ss_pred CCCeEEehhHhhcC
Confidence 99999999988764
No 246
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=93.49 E-value=0.83 Score=45.40 Aligned_cols=102 Identities=22% Similarity=0.150 Sum_probs=70.3
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCC-CcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aG-aD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
+.+..+|+..|. +...|+-.++-.-..+..+.++| +|+|.+|+..-.. +-|... +.+..+.+...+
T Consensus 170 ~a~~~~~~~~~~-~~~~~idve~~~~~~~~~~~~~~~~d~irlDs~~~~~-----------~~~~~~-~~~~~~~~~~~~ 236 (281)
T cd00516 170 AAVKALRRWLPE-LFIALIDVEVDTLEEALEAAKAGGADGIRLDSGSPEE-----------LDPAVL-ILKARAHLDGKG 236 (281)
T ss_pred HHHHHHHHhCCC-CceEEEEEEeCCHHHHHHHHhcCCCCEEEeCCCChHH-----------HHHHHH-HHHHHHhhhhcC
Confidence 567888887665 45666655555556677888899 9999999853211 112222 233344444333
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
. .++.|+++|||- ...+..-...|.|.+++|+.+..
T Consensus 237 ~-~~~~i~~Sggi~-~~~i~~~~~~gvd~~gvG~~~~~ 272 (281)
T cd00516 237 L-PRVKIEASGGLD-EENIRAYAETGVDVFGVGTLLHS 272 (281)
T ss_pred C-CceEEEEeCCCC-HHHHHHHHHcCCCEEEeCccccc
Confidence 3 468999999996 88888888899999999997643
No 247
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.39 E-value=0.24 Score=46.80 Aligned_cols=71 Identities=15% Similarity=0.074 Sum_probs=51.7
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
..+.+..+.+.|+|+|-+ +-..+ -.| ...|..+...+ ..+|+++.||| |..++...+..
T Consensus 114 t~~e~~~A~~~Gadyv~~--Fpt~~---------~~G---~~~l~~~~~~~------~~ipvvaiGGI-~~~n~~~~l~a 172 (187)
T PRK07455 114 TPTEIVTAWQAGASCVKV--FPVQA---------VGG---ADYIKSLQGPL------GHIPLIPTGGV-TLENAQAFIQA 172 (187)
T ss_pred CHHHHHHHHHCCCCEEEE--CcCCc---------ccC---HHHHHHHHhhC------CCCcEEEeCCC-CHHHHHHHHHC
Confidence 456777888999999988 32110 012 23455554432 25999999999 78999999999
Q ss_pred CCCeeccChHHH
Q psy10999 338 GADEIGLSTAPL 349 (447)
Q Consensus 338 GAd~V~iGt~~L 349 (447)
||++|++++.++
T Consensus 173 Ga~~vav~s~i~ 184 (187)
T PRK07455 173 GAIAVGLSGQLF 184 (187)
T ss_pred CCeEEEEehhcc
Confidence 999999998753
No 248
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=93.21 E-value=0.49 Score=45.78 Aligned_cols=82 Identities=17% Similarity=0.123 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.+.|+.||+.+|++.|++=.+. ....++.+.++|||+|+.-|.. | ..+..+.+ .
T Consensus 53 ~~~~I~~l~~~~p~~~IGAGTVl---~~~~a~~a~~aGA~FivsP~~~----------------~--~vi~~a~~----~ 107 (212)
T PRK05718 53 ALEAIRLIAKEVPEALIGAGTVL---NPEQLAQAIEAGAQFIVSPGLT----------------P--PLLKAAQE----G 107 (212)
T ss_pred HHHHHHHHHHHCCCCEEEEeecc---CHHHHHHHHHcCCCEEECCCCC----------------H--HHHHHHHH----c
Confidence 55789999998887666554332 2367888999999999875431 1 22333332 2
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
.++ .-=|+.|+.++..|+.+||+.|-+
T Consensus 108 ----~i~--~iPG~~TptEi~~a~~~Ga~~vKl 134 (212)
T PRK05718 108 ----PIP--LIPGVSTPSELMLGMELGLRTFKF 134 (212)
T ss_pred ----CCC--EeCCCCCHHHHHHHHHCCCCEEEE
Confidence 244 345899999999999999998755
No 249
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=93.12 E-value=0.85 Score=40.78 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=54.3
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCC-ChH----HHH
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIR-TGF----DVV 332 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIr-tg~----Dv~ 332 (447)
....++.+.+.+||+|-+|..-+. +...++++.+.|++.|+++ ++|++-|.+- -+. +..
T Consensus 39 ~e~~v~aa~~~~adiVglS~L~t~---------------~~~~~~~~~~~l~~~gl~~-v~vivGG~~~i~~~d~~~~~~ 102 (128)
T cd02072 39 QEEFIDAAIETDADAILVSSLYGH---------------GEIDCKGLREKCDEAGLKD-ILLYVGGNLVVGKQDFEDVEK 102 (128)
T ss_pred HHHHHHHHHHcCCCEEEEeccccC---------------CHHHHHHHHHHHHHCCCCC-CeEEEECCCCCChhhhHHHHH
Confidence 356777888999999999987543 3356788888999999975 9999888874 333 446
Q ss_pred HHHHcCCCeecc
Q psy10999 333 VAALLGADEIGL 344 (447)
Q Consensus 333 kAlaLGAd~V~i 344 (447)
+..++|.++|+-
T Consensus 103 ~L~~~Gv~~vf~ 114 (128)
T cd02072 103 RFKEMGFDRVFA 114 (128)
T ss_pred HHHHcCCCEEEC
Confidence 788899998743
No 250
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=93.08 E-value=1 Score=43.67 Aligned_cols=92 Identities=15% Similarity=0.117 Sum_probs=64.4
Q ss_pred HHHHHHHHhCCCCceEE--EEeeeccHH-HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 234 ELIYDLKCANPNARISV--KLVSEVGVG-VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~V--Klv~~~Gi~-~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
+.|+.||+.+|+++|+. |. ...| ..++.+.++|||.++|+|. + -.+| +..+....++
T Consensus 45 ~aV~~lr~~~pd~~IvAD~Kt---~D~G~~e~~ma~~aGAd~~tV~g~---A-----------~~~T---I~~~i~~A~~ 104 (217)
T COG0269 45 RAVRALRELFPDKIIVADLKT---ADAGAIEARMAFEAGADWVTVLGA---A-----------DDAT---IKKAIKVAKE 104 (217)
T ss_pred HHHHHHHHHCCCCeEEeeeee---cchhHHHHHHHHHcCCCEEEEEec---C-----------CHHH---HHHHHHHHHH
Confidence 67999999999977754 63 2444 4678899999999999986 1 1123 3333333444
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHH-cCCCeeccChHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAAL-LGADEIGLSTAP 348 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAla-LGAd~V~iGt~~ 348 (447)
+|..-.+.++ |..+..+.++-+- +|.|-+.+-|..
T Consensus 105 ~~~~v~iDl~---~~~~~~~~~~~l~~~gvd~~~~H~g~ 140 (217)
T COG0269 105 YGKEVQIDLI---GVWDPEQRAKWLKELGVDQVILHRGR 140 (217)
T ss_pred cCCeEEEEee---cCCCHHHHHHHHHHhCCCEEEEEecc
Confidence 4543334444 7899999999999 999998877653
No 251
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=93.00 E-value=0.81 Score=47.02 Aligned_cols=93 Identities=18% Similarity=0.125 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH----HHHHHHHCC--CcEEEEecCCCCCCCccccccccCCCChHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGVGV----VASGVAKGK--AEHIVISGHDGGTGASSWTGIKNAGLPWELGV 301 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~----~A~~a~~aG--aD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L 301 (447)
++|+|.+. +|+.++. .+.+=+ .+|+.. .+..+.++| +|+|+++=..|-+ ......+
T Consensus 67 ~~E~~~sf---vrk~k~~-~L~v~~--SvG~t~e~~~r~~~lv~a~~~~d~i~~D~ahg~s------------~~~~~~i 128 (321)
T TIGR01306 67 DEESRIPF---IKDMQER-GLFASI--SVGVKACEYEFVTQLAEEALTPEYITIDIAHGHS------------NSVINMI 128 (321)
T ss_pred CHHHHHHH---HHhcccc-ccEEEE--EcCCCHHHHHHHHHHHhcCCCCCEEEEeCccCch------------HHHHHHH
Confidence 67888665 5555433 222222 224322 334567888 7999999765542 1233344
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 302 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 302 ~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
..+.+.. ..|.++.|.+.|..++..++..|||++-+|
T Consensus 129 ~~i~~~~-------p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 129 KHIKTHL-------PDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred HHHHHhC-------CCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 4444332 467889999999999999999999998766
No 252
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.99 E-value=0.47 Score=45.85 Aligned_cols=82 Identities=22% Similarity=0.147 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCC---CceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHH
Q psy10999 232 LAELIYDLKCANPN---ARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 232 l~~~I~~Lr~~~p~---~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
+.+.|+.|++.+++ +.|++-.| =...+++.+.++|++||+--+. -+++.+++
T Consensus 51 a~~~i~~l~~~~~~~p~~~vGaGTV---~~~~~~~~a~~aGA~FivsP~~----------------------~~~v~~~~ 105 (213)
T PRK06552 51 ASEVIKELVELYKDDPEVLIGAGTV---LDAVTARLAILAGAQFIVSPSF----------------------NRETAKIC 105 (213)
T ss_pred HHHHHHHHHHHcCCCCCeEEeeeeC---CCHHHHHHHHHcCCCEEECCCC----------------------CHHHHHHH
Confidence 55789999988743 33433322 1345788899999999972111 12444444
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
.++ ++|++- |..|+.++..|+.+|||.+.+
T Consensus 106 ~~~----~i~~iP--G~~T~~E~~~A~~~Gad~vkl 135 (213)
T PRK06552 106 NLY----QIPYLP--GCMTVTEIVTALEAGSEIVKL 135 (213)
T ss_pred HHc----CCCEEC--CcCCHHHHHHHHHcCCCEEEE
Confidence 443 355443 999999999999999999987
No 253
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=92.91 E-value=0.55 Score=46.23 Aligned_cols=69 Identities=23% Similarity=0.191 Sum_probs=50.6
Q ss_pred HHHHHHCCCcEE---EEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 262 ASGVAKGKAEHI---VISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 262 A~~a~~aGaD~I---~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
|+.-.+.||..+ +++|.-.|. .-...++.++.+.+ .+||.+-|||||-.++...+.+|
T Consensus 37 a~~~~~~Ga~~lHlVDLdgA~~g~------------~~n~~~i~~i~~~~-------~~~vQvGGGIRs~~~v~~ll~~G 97 (241)
T COG0106 37 AKKWSDQGAEWLHLVDLDGAKAGG------------PRNLEAIKEILEAT-------DVPVQVGGGIRSLEDVEALLDAG 97 (241)
T ss_pred HHHHHHcCCcEEEEeeccccccCC------------cccHHHHHHHHHhC-------CCCEEeeCCcCCHHHHHHHHHCC
Confidence 334445566554 556665332 12446677777764 68999999999999999999999
Q ss_pred CCeeccChHHH
Q psy10999 339 ADEIGLSTAPL 349 (447)
Q Consensus 339 Ad~V~iGt~~L 349 (447)
++.|.+||..+
T Consensus 98 ~~rViiGt~av 108 (241)
T COG0106 98 VARVIIGTAAV 108 (241)
T ss_pred CCEEEEeccee
Confidence 99999999653
No 254
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.89 E-value=0.58 Score=45.24 Aligned_cols=88 Identities=14% Similarity=0.034 Sum_probs=59.5
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.++..++. ++|+ ++.+...+++..+.++|+|+|-+- -. ...|+. .|..+...+
T Consensus 100 ~v~~~~~~~--~i~~----iPG~~T~~E~~~A~~~Gad~vklF--Pa----------~~~G~~---~ik~l~~~~----- 153 (213)
T PRK06552 100 ETAKICNLY--QIPY----LPGCMTVTEIVTALEAGSEIVKLF--PG----------STLGPS---FIKAIKGPL----- 153 (213)
T ss_pred HHHHHHHHc--CCCE----ECCcCCHHHHHHHHHcCCCEEEEC--Cc----------ccCCHH---HHHHHhhhC-----
Confidence 345555554 4454 233334577888899999999982 11 113322 233333322
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
.++|+++.|||. ..++..-+..||+++++|+.++
T Consensus 154 -p~ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~ 187 (213)
T PRK06552 154 -PQVNVMVTGGVN-LDNVKDWFAAGADAVGIGGELN 187 (213)
T ss_pred -CCCEEEEECCCC-HHHHHHHHHCCCcEEEEchHHh
Confidence 369999999996 7999999999999999999875
No 255
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=92.81 E-value=0.38 Score=47.99 Aligned_cols=69 Identities=16% Similarity=0.135 Sum_probs=50.3
Q ss_pred HHHHHHCCCcEEEEecC--CCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-
Q psy10999 262 ASGVAKGKAEHIVISGH--DGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG- 338 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~--~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG- 338 (447)
+....+.|++.|++.-- +| + + .| |....+.++.+.. ++|||++||+++-.|+.+...+|
T Consensus 169 ~~~~~~~g~~eii~TdI~rDG-t-------l--~G-~d~el~~~l~~~~-------~ipVIASGGv~sleDi~~L~~~g~ 230 (262)
T PLN02446 169 TLEFLAAYCDEFLVHGVDVEG-K-------R--LG-IDEELVALLGEHS-------PIPVTYAGGVRSLDDLERVKVAGG 230 (262)
T ss_pred HHHHHHhCCCEEEEEEEcCCC-c-------c--cC-CCHHHHHHHHhhC-------CCCEEEECCCCCHHHHHHHHHcCC
Confidence 45666778888876533 22 2 1 12 4556666666653 69999999999999999999985
Q ss_pred -CCeeccChHH
Q psy10999 339 -ADEIGLSTAP 348 (447)
Q Consensus 339 -Ad~V~iGt~~ 348 (447)
..++.+|+++
T Consensus 231 g~~gvIvGkAl 241 (262)
T PLN02446 231 GRVDVTVGSAL 241 (262)
T ss_pred CCEEEEEEeeH
Confidence 6789999986
No 256
>KOG1606|consensus
Probab=92.63 E-value=0.33 Score=46.89 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=30.0
Q ss_pred ceEE--EEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 316 RVVL--QADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 316 ~v~v--iadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
++|| +++||+.|+.|.+-.+.||.|+|.+|+...
T Consensus 207 rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiF 242 (296)
T KOG1606|consen 207 RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIF 242 (296)
T ss_pred CCceEEecccCcCChhHHHHHHHcCCCeEEeccccc
Confidence 5554 789999999999999999999999998654
No 257
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=92.59 E-value=2.8 Score=41.27 Aligned_cols=103 Identities=18% Similarity=0.211 Sum_probs=66.3
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCC-CcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aG-aD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
+.|+.|++. |+++-+=+|-...-...|..+.++| +++|-. +=|+ ++|.|.-....+.++++.+..+
T Consensus 103 ~ai~~L~~~--GI~vn~T~vfs~~Qa~~aa~A~~aG~a~yisp--fvgR--------~dd~g~D~~~~i~~i~~i~~~~- 169 (236)
T TIGR02134 103 PLIQKLSAD--GITLNVTALTTIEQVEKVCQSFTDGVPGIVSV--FAGR--------IADTGVDPEPHMREALEIVAQK- 169 (236)
T ss_pred HHHHHHHHC--CCcEEeehcCCHHHHHHHHHHHhCCCCeEEEE--ecch--------hhhcCCCcHHHHHHHHHHHHhC-
Confidence 345555443 4444444332222222333455689 688744 3355 5677877777888888887654
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
.+..|+++ -+|+..+|..++..|||.+-+.-..+.-+
T Consensus 170 --~~tkILaA-S~R~~~~v~~a~~~Gad~vTvp~~v~~~l 206 (236)
T TIGR02134 170 --PGVELLWA-SPRELFNIIQADRIGCDIITCAHDILAKL 206 (236)
T ss_pred --CCcEEEEE-ccCCHHHHHHHHHcCCCEEECCHHHHHHH
Confidence 25666665 49999999999999999987776665543
No 258
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=92.54 E-value=0.29 Score=46.80 Aligned_cols=91 Identities=19% Similarity=0.142 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.+.|+.+++.+|+.-|++-.|. ....++.+.++||++|+--+. -+++.+.+.++
T Consensus 46 a~~~I~~l~~~~p~~~vGAGTV~---~~e~a~~a~~aGA~FivSP~~----------------------~~~v~~~~~~~ 100 (196)
T PF01081_consen 46 ALEAIEALRKEFPDLLVGAGTVL---TAEQAEAAIAAGAQFIVSPGF----------------------DPEVIEYAREY 100 (196)
T ss_dssp HHHHHHHHHHHHTTSEEEEES-----SHHHHHHHHHHT-SEEEESS------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCeeEEEecc---CHHHHHHHHHcCCCEEECCCC----------------------CHHHHHHHHHc
Confidence 55789999988888555444221 345788899999999975322 12334444333
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCee------ccC-hHHHHHhc
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEI------GLS-TAPLITMG 353 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V------~iG-t~~L~alg 353 (447)
+++++ =|+.|+.++..|+.+||+.| .+| -.++-++.
T Consensus 101 ----~i~~i--PG~~TptEi~~A~~~G~~~vK~FPA~~~GG~~~ik~l~ 143 (196)
T PF01081_consen 101 ----GIPYI--PGVMTPTEIMQALEAGADIVKLFPAGALGGPSYIKALR 143 (196)
T ss_dssp ----TSEEE--EEESSHHHHHHHHHTT-SEEEETTTTTTTHHHHHHHHH
T ss_pred ----CCccc--CCcCCHHHHHHHHHCCCCEEEEecchhcCcHHHHHHHh
Confidence 35544 48899999999999999965 345 55665553
No 259
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=92.52 E-value=2.3 Score=44.92 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEe-cCCCCCCCccccccccCCCChHHHHHHHHHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVIS-GHDGGTGASSWTGIKNAGLPWELGVAETHQV 307 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~Vs-G~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~ 307 (447)
.+.+...++.+|+. +..++|-++.........+.+ ..++|+|.+- +.+-++ . .|...-+.++.+.
T Consensus 262 ~~ti~~ai~~akk~--GikvgVD~lnp~tp~e~i~~l-~~~vD~Vllht~vdp~~-------~----~~~~~kI~~ikk~ 327 (391)
T PRK13307 262 ISTIEKAIHEAQKT--GIYSILDMLNVEDPVKLLESL-KVKPDVVELHRGIDEEG-------T----EHAWGNIKEIKKA 327 (391)
T ss_pred HHHHHHHHHHHHHc--CCEEEEEEcCCCCHHHHHHHh-hCCCCEEEEccccCCCc-------c----cchHHHHHHHHHh
Confidence 34566677777775 445555322211122222223 7799999774 233221 1 1222344444432
Q ss_pred HHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 308 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 308 l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
..+++|.++|||. ..++-.++..|||.+.+||+.
T Consensus 328 ------~~~~~I~VdGGI~-~eti~~l~~aGADivVVGsaI 361 (391)
T PRK13307 328 ------GGKILVAVAGGVR-VENVEEALKAGADILVVGRAI 361 (391)
T ss_pred ------CCCCcEEEECCcC-HHHHHHHHHcCCCEEEEeHHH
Confidence 1258999999998 778889999999999999974
No 260
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=92.48 E-value=1.2 Score=46.03 Aligned_cols=98 Identities=20% Similarity=0.226 Sum_probs=61.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH----HHHHHHH--CCCcEEEEecCCCCCCCccccccccCCCCh
Q psy10999 224 HDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV----VASGVAK--GKAEHIVISGHDGGTGASSWTGIKNAGLPW 297 (447)
Q Consensus 224 ~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~----~A~~a~~--aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~ 297 (447)
|.++++++|.++++..+... ...+.| .+|+.. .+..+.+ +|+|+|+||=..|-+- -.
T Consensus 76 Hk~~~~e~~~~fv~~~~~~~-~~~~~v----avG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~------------~~ 138 (346)
T PRK05096 76 HKHYSVEEWAAFVNNSSADV-LKHVMV----STGTSDADFEKTKQILALSPALNFICIDVANGYSE------------HF 138 (346)
T ss_pred ecCCCHHHHHHHHHhccccc-cceEEE----EecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHH------------HH
Confidence 66788999988887766331 112333 234432 2344555 6999999997765420 12
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 298 ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 298 ~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
+..+..+.+.. .+++ +..|.+.|+.-+...+..|||+|=+|
T Consensus 139 i~~ik~ik~~~------P~~~-vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 139 VQFVAKAREAW------PDKT-ICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHHHhC------CCCc-EEEecccCHHHHHHHHHcCCCEEEEc
Confidence 23344443332 2454 67899999999888888999987544
No 261
>PLN02417 dihydrodipicolinate synthase
Probab=92.34 E-value=1.1 Score=44.84 Aligned_cols=93 Identities=9% Similarity=0.111 Sum_probs=58.4
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHH----HHHHcC
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVV----VAALLG 338 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~----kAlaLG 338 (447)
+.+.+.|+|+|.+-|+.|=. +-+...+-..-+..+++. +.+++||++.=|=-+-.|++ .|-.+|
T Consensus 29 ~~l~~~Gv~Gi~~~GstGE~----------~~ls~~Er~~~~~~~~~~--~~~~~pvi~gv~~~~t~~~i~~a~~a~~~G 96 (280)
T PLN02417 29 NMQIENGAEGLIVGGTTGEG----------QLMSWDEHIMLIGHTVNC--FGGKIKVIGNTGSNSTREAIHATEQGFAVG 96 (280)
T ss_pred HHHHHcCCCEEEECccCcch----------hhCCHHHHHHHHHHHHHH--hCCCCcEEEECCCccHHHHHHHHHHHHHcC
Confidence 34467899999998875532 123333322222222222 34579999865544555554 367899
Q ss_pred CCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHH
Q psy10999 339 ADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEE 397 (447)
Q Consensus 339 Ad~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~E 397 (447)
||+|++-.|+.+. ..++++.+|++.+.+.
T Consensus 97 adav~~~~P~y~~------------------------------~~~~~i~~~f~~va~~ 125 (280)
T PLN02417 97 MHAALHINPYYGK------------------------------TSQEGLIKHFETVLDM 125 (280)
T ss_pred CCEEEEcCCccCC------------------------------CCHHHHHHHHHHHHhh
Confidence 9999999886432 1468888888877764
No 262
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=92.28 E-value=1.1 Score=45.10 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=60.2
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHH----HHHHHcC
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDV----VVAALLG 338 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv----~kAlaLG 338 (447)
+.+.+.|+|+|.+-|..|-. ..++.++=..-+..+++. +.+++||++-=|-.+-.|. -.|..+|
T Consensus 28 ~~~~~~Gv~gi~v~GstGE~----------~~Ls~~Er~~l~~~~~~~--~~g~~pvi~gv~~~~t~~ai~~a~~A~~~G 95 (294)
T TIGR02313 28 EFQIEGGSHAISVGGTSGEP----------GSLTLEERKQAIENAIDQ--IAGRIPFAPGTGALNHDETLELTKFAEEAG 95 (294)
T ss_pred HHHHHcCCCEEEECccCccc----------ccCCHHHHHHHHHHHHHH--hCCCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence 34567899999998875432 223333322222222222 3458999986665555555 3577899
Q ss_pred CCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy10999 339 ADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEV 398 (447)
Q Consensus 339 Ad~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~El 398 (447)
||++++..|+.+.. .++++.+|+..+.+..
T Consensus 96 ad~v~v~pP~y~~~------------------------------~~~~l~~~f~~ia~a~ 125 (294)
T TIGR02313 96 ADAAMVIVPYYNKP------------------------------NQEALYDHFAEVADAV 125 (294)
T ss_pred CCEEEEcCccCCCC------------------------------CHHHHHHHHHHHHHhc
Confidence 99999999875422 4688888888887764
No 263
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=92.11 E-value=3.3 Score=40.37 Aligned_cols=101 Identities=14% Similarity=0.132 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCC---CCCCCccccccccCCCChHHHHHHHHHHH
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD---GGTGASSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~---GGtg~a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
+...|..+|+. +...+|-+-+.+.+......+. -+|.|.|=..+ ||+.+ =.....-+.++.+.+
T Consensus 99 ~~~~l~~Ir~~--g~k~GlalnP~T~~~~i~~~l~--~vD~VlvMtV~PGf~GQ~f---------i~~~l~KI~~l~~~~ 165 (223)
T PRK08745 99 VHRTIQLIKSH--GCQAGLVLNPATPVDILDWVLP--ELDLVLVMSVNPGFGGQAF---------IPSALDKLRAIRKKI 165 (223)
T ss_pred HHHHHHHHHHC--CCceeEEeCCCCCHHHHHHHHh--hcCEEEEEEECCCCCCccc---------cHHHHHHHHHHHHHH
Confidence 44567888886 4555555545444433322222 56877543222 22211 113445566666666
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
.+++. ++.|.+||||. ...+.+....|||.+.+|+++
T Consensus 166 ~~~~~--~~~IeVDGGI~-~eti~~l~~aGaDi~V~GSai 202 (223)
T PRK08745 166 DALGK--PIRLEIDGGVK-ADNIGAIAAAGADTFVAGSAI 202 (223)
T ss_pred HhcCC--CeeEEEECCCC-HHHHHHHHHcCCCEEEEChhh
Confidence 65543 48899999997 567888899999999999973
No 264
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=92.06 E-value=1.1 Score=45.05 Aligned_cols=72 Identities=21% Similarity=0.099 Sum_probs=46.8
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCChH---HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHH----HHH
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE---LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVV----VAA 335 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~---~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~----kAl 335 (447)
..+.+.|+|+|.+-|+.|-. .-++.+ ..+..+.+. +.+++|||+.-|- +-.+.+ .|-
T Consensus 28 ~~l~~~Gv~gi~v~GstGE~----------~~Ls~eEr~~l~~~~~~~-----~~~~~pvi~gv~~-~t~~~i~~a~~a~ 91 (289)
T cd00951 28 EWLLSYGAAALFAAGGTGEF----------FSLTPDEYAQVVRAAVEE-----TAGRVPVLAGAGY-GTATAIAYAQAAE 91 (289)
T ss_pred HHHHHcCCCEEEECcCCcCc----------ccCCHHHHHHHHHHHHHH-----hCCCCCEEEecCC-CHHHHHHHHHHHH
Confidence 44567899999998875532 123333 233333443 2357999997775 555554 467
Q ss_pred HcCCCeeccChHHHH
Q psy10999 336 LLGADEIGLSTAPLI 350 (447)
Q Consensus 336 aLGAd~V~iGt~~L~ 350 (447)
.+|||++.+-.|+..
T Consensus 92 ~~Gad~v~~~pP~y~ 106 (289)
T cd00951 92 KAGADGILLLPPYLT 106 (289)
T ss_pred HhCCCEEEECCCCCC
Confidence 799999999887753
No 265
>PRK12656 fructose-6-phosphate aldolase; Reviewed
Probab=91.95 E-value=2.4 Score=41.31 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=57.4
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCC
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 340 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd 340 (447)
.+..++++||++| |=+=|+ +++.|.-....+.++++.+..++. +..|+ .--+|+..+|..++.+|||
T Consensus 118 Qa~~Aa~aGa~yv--sPyvgR--------i~d~g~D~~~~i~~i~~~~~~~~~--~tkIL-aAS~r~~~~v~~a~~~G~d 184 (222)
T PRK12656 118 QGLLAIEAGADYL--APYYNR--------MENLNIDSNAVIGQLAEAIDRENS--DSKIL-AASFKNVAQVNKAFALGAQ 184 (222)
T ss_pred HHHHHHHCCCCEE--ecccch--------hhhcCCCHHHHHHHHHHHHHhcCC--CCEEE-EEecCCHHHHHHHHHcCCC
Confidence 4556788999987 334354 456666556778888888876654 34444 4459999999999999999
Q ss_pred eeccChHHHHHh
Q psy10999 341 EIGLSTAPLITM 352 (447)
Q Consensus 341 ~V~iGt~~L~al 352 (447)
.+-+.-..+..+
T Consensus 185 ~vTvp~~vl~~l 196 (222)
T PRK12656 185 AVTAGPDVFEAA 196 (222)
T ss_pred EEecCHHHHHHH
Confidence 998887766543
No 266
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=91.94 E-value=3.3 Score=41.69 Aligned_cols=119 Identities=17% Similarity=0.114 Sum_probs=71.4
Q ss_pred HHHHHHHH-CCCcEEEEe-cCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcC--CCCChHHHHHHH
Q psy10999 260 VVASGVAK-GKAEHIVIS-GHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADG--QIRTGFDVVVAA 335 (447)
Q Consensus 260 ~~A~~a~~-aGaD~I~Vs-G~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadG--GIrtg~Dv~kAl 335 (447)
.+|..+.+ .|+|++.++ |.-=|+- -....+ ..+.|.++++.+ ++||.+-| ||. ..++.+++
T Consensus 156 eea~~f~~~tgvD~Lavs~Gt~hg~~------~~~~~l-~~e~L~~i~~~~-------~iPlv~hGgSGi~-~e~i~~~i 220 (282)
T TIGR01859 156 DEAEQFVKETGVDYLAAAIGTSHGKY------KGEPGL-DFERLKEIKELT-------NIPLVLHGASGIP-EEQIKKAI 220 (282)
T ss_pred HHHHHHHHHHCcCEEeeccCcccccc------CCCCcc-CHHHHHHHHHHh-------CCCEEEECCCCCC-HHHHHHHH
Confidence 34555564 899999986 3311111 011112 356677777764 59999999 885 56799999
Q ss_pred HcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCC
Q psy10999 336 LLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGF 409 (447)
Q Consensus 336 aLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~ 409 (447)
..|++.|.++|-+..+..-........ +.. .++ -..-+....+.+.+.+++.|.+ +|.
T Consensus 221 ~~Gi~kiNv~T~l~~a~~~~~~~~~~~-~~~------------~~~-~~~~~~~~~~~~~~~v~~~~~~--~gs 278 (282)
T TIGR01859 221 KLGIAKINIDTDCRIAFTAAIRKVLTE-KKD------------EYD-PRKILGPAREAIKETVKEKMRL--FGS 278 (282)
T ss_pred HcCCCEEEECcHHHHHHHHHHHHHHHh-CCC------------cCC-HHHHHHHHHHHHHHHHHHHHHH--hCC
Confidence 999999999999877643222111100 000 000 1123344566777888888888 664
No 267
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=91.69 E-value=0.55 Score=44.75 Aligned_cols=30 Identities=17% Similarity=-0.034 Sum_probs=25.2
Q ss_pred EEEcCCCCChH-HHHHHHHcCCCeeccChHH
Q psy10999 319 LQADGQIRTGF-DVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 319 viadGGIrtg~-Dv~kAlaLGAd~V~iGt~~ 348 (447)
.+++|||+... ++..++..|||.+.+||+.
T Consensus 165 ~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I 195 (215)
T PRK13813 165 KIISPGIGAQGGKAADAIKAGADYVIVGRSI 195 (215)
T ss_pred EEEeCCcCCCCCCHHHHHHcCCCEEEECccc
Confidence 34999999863 6778889999999999974
No 268
>PRK08999 hypothetical protein; Provisional
Probab=91.68 E-value=0.5 Score=47.57 Aligned_cols=73 Identities=18% Similarity=0.038 Sum_probs=49.5
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCC-hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP-WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p-~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
.++..+.+.|+|+|.++=-- -|.. +....| ....+.++.+.. ++||+|-||| +..++...+..|
T Consensus 237 ~~~~~a~~~~~dyi~~gpvf-~t~t------k~~~~~~g~~~~~~~~~~~-------~~Pv~AiGGI-~~~~~~~~~~~g 301 (312)
T PRK08999 237 EELARAQRLGVDFAVLSPVQ-PTAS------HPGAAPLGWEGFAALIAGV-------PLPVYALGGL-GPGDLEEAREHG 301 (312)
T ss_pred HHHHHHHhcCCCEEEECCCc-CCCC------CCCCCCCCHHHHHHHHHhC-------CCCEEEECCC-CHHHHHHHHHhC
Confidence 34667778999999985442 2211 111222 234455554432 6999999999 999999999999
Q ss_pred CCeeccChH
Q psy10999 339 ADEIGLSTA 347 (447)
Q Consensus 339 Ad~V~iGt~ 347 (447)
|++|.+-+.
T Consensus 302 ~~gva~i~~ 310 (312)
T PRK08999 302 AQGIAGIRG 310 (312)
T ss_pred CCEEEEEEE
Confidence 999976553
No 269
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=91.51 E-value=3.2 Score=40.65 Aligned_cols=105 Identities=15% Similarity=0.004 Sum_probs=62.9
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCC-CCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
+...|.++|+..-++..++-+-+.+.+......+. -+|.|.|=..+ |.+|.. ++ .....-+.++.+.+.+
T Consensus 105 ~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~--~vD~VLiMtV~PGfgGQ~---f~----~~~l~KI~~lr~~~~~ 175 (228)
T PRK08091 105 LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLD--QIDLIQILTLDPRTGTKA---PS----DLILDRVIQVENRLGN 175 (228)
T ss_pred HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHh--hcCEEEEEEECCCCCCcc---cc----HHHHHHHHHHHHHHHh
Confidence 45678888887321255555545444444332232 37888543222 211211 11 1244556666666666
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
+++ ++.|.+||||. ..-+.+....|||.+.+|+++
T Consensus 176 ~~~--~~~IeVDGGI~-~~ti~~l~~aGaD~~V~GSal 210 (228)
T PRK08091 176 RRV--EKLISIDGSMT-LELASYLKQHQIDWVVSGSAL 210 (228)
T ss_pred cCC--CceEEEECCCC-HHHHHHHHHCCCCEEEEChhh
Confidence 554 47799999997 557779999999999999873
No 270
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=91.45 E-value=0.39 Score=47.03 Aligned_cols=45 Identities=16% Similarity=0.014 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 299 LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
..+..+.+.+ +||||++||..+..|++.++..| ||++..++.|-+
T Consensus 189 ~l~~~v~~~v-------~iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~ 234 (256)
T COG0107 189 ELTRAVREAV-------NIPVIASGGAGKPEHFVEAFTEGKADAALAASIFHF 234 (256)
T ss_pred HHHHHHHHhC-------CCCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhc
Confidence 4455555554 69999999999999999999999 999877766543
No 271
>PRK12655 fructose-6-phosphate aldolase; Reviewed
Probab=91.31 E-value=2.7 Score=40.89 Aligned_cols=78 Identities=15% Similarity=0.066 Sum_probs=58.0
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCe
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADE 341 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~ 341 (447)
|..++++|+++|-. +=|+ +++.|......+.++++.++.++.. ..| ....+|+..++..++.+|||.
T Consensus 117 a~~Aa~aGa~yIsp--yvgR--------~~~~g~dg~~~i~~~~~~~~~~~~~--tkI-LaAS~r~~~~v~~~~~~G~d~ 183 (220)
T PRK12655 117 GLLAALAGAKYVAP--YVNR--------VDAQGGDGIRMVQELQTLLEMHAPE--SMV-LAASFKTPRQALDCLLAGCQS 183 (220)
T ss_pred HHHHHHcCCeEEEe--ecch--------HhHcCCCHHHHHHHHHHHHHhcCCC--cEE-EEEecCCHHHHHHHHHcCCCE
Confidence 44567899997743 3344 4566777778888999988876643 434 455699999999999999999
Q ss_pred eccChHHHHHh
Q psy10999 342 IGLSTAPLITM 352 (447)
Q Consensus 342 V~iGt~~L~al 352 (447)
+-+.-..+..+
T Consensus 184 vTip~~vl~~l 194 (220)
T PRK12655 184 ITLPLDVAQQM 194 (220)
T ss_pred EECCHHHHHHH
Confidence 98887776654
No 272
>PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=91.29 E-value=1.8 Score=41.75 Aligned_cols=42 Identities=17% Similarity=0.273 Sum_probs=30.3
Q ss_pred HHHHHHHHhCCCCceEE--EEeeeccHH-HHHHHHHHCCCcEEEEecC
Q psy10999 234 ELIYDLKCANPNARISV--KLVSEVGVG-VVASGVAKGKAEHIVISGH 278 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~V--Klv~~~Gi~-~~A~~a~~aGaD~I~VsG~ 278 (447)
+.|++||+..|+.+|.+ |+. .++ +.+..+.++|+|+++|-+.
T Consensus 45 ~~i~~lk~~~~~~~v~~DLK~~---Di~~~v~~~~~~~Gad~vTvH~~ 89 (216)
T PRK13306 45 KAVRVLRALYPDKIIVADTKIA---DAGKILAKMAFEAGADWVTVICA 89 (216)
T ss_pred HHHHHHHHHCCCCEEEEEEeec---CCcHHHHHHHHHCCCCEEEEeCC
Confidence 56889998877777654 633 343 3454588999999999874
No 273
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=91.18 E-value=1.1 Score=48.83 Aligned_cols=67 Identities=10% Similarity=0.119 Sum_probs=46.6
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
+.+..+.++|+|+|.|+-..|-+ .-....+.++.+.. ..+ .++.|+|.|..+...|+.+||
T Consensus 251 ~r~~~l~~ag~d~i~iD~~~g~~------------~~~~~~i~~ik~~~------p~~-~vi~g~v~t~e~a~~a~~aGa 311 (505)
T PLN02274 251 ERLEHLVKAGVDVVVLDSSQGDS------------IYQLEMIKYIKKTY------PEL-DVIGGNVVTMYQAQNLIQAGV 311 (505)
T ss_pred HHHHHHHHcCCCEEEEeCCCCCc------------HHHHHHHHHHHHhC------CCC-cEEEecCCCHHHHHHHHHcCc
Confidence 45667889999999999865432 01223344444321 123 556799999999999999999
Q ss_pred CeeccC
Q psy10999 340 DEIGLS 345 (447)
Q Consensus 340 d~V~iG 345 (447)
|+|.+|
T Consensus 312 D~i~vg 317 (505)
T PLN02274 312 DGLRVG 317 (505)
T ss_pred CEEEEC
Confidence 999654
No 274
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=91.17 E-value=1.6 Score=44.16 Aligned_cols=90 Identities=19% Similarity=0.081 Sum_probs=57.2
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCChHH---HHHHHHHHHHhcCCCCceEEEEcCCCCChHHHH----HHH
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWEL---GVAETHQVLALNNLRSRVVLQADGQIRTGFDVV----VAA 335 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~---~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~----kAl 335 (447)
+.+.+.|+|+|.+-|..|-. ..++.++ .+..+.+. +.+++|||+.-|- +-.+.+ .|-
T Consensus 35 ~~l~~~Gv~Gi~~~GstGE~----------~~Lt~eEr~~~~~~~~~~-----~~~~~pvi~gv~~-~t~~~i~~~~~a~ 98 (303)
T PRK03620 35 EWLAPYGAAALFAAGGTGEF----------FSLTPDEYSQVVRAAVET-----TAGRVPVIAGAGG-GTAQAIEYAQAAE 98 (303)
T ss_pred HHHHHcCCCEEEECcCCcCc----------ccCCHHHHHHHHHHHHHH-----hCCCCcEEEecCC-CHHHHHHHHHHHH
Confidence 34567899999998775432 2233332 23333343 2457999986664 444543 456
Q ss_pred HcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy10999 336 LLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEV 398 (447)
Q Consensus 336 aLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~El 398 (447)
.+|||+|.+-.|+.+.. .++++.+|+..+.+..
T Consensus 99 ~~Gadav~~~pP~y~~~------------------------------~~~~i~~~f~~va~~~ 131 (303)
T PRK03620 99 RAGADGILLLPPYLTEA------------------------------PQEGLAAHVEAVCKST 131 (303)
T ss_pred HhCCCEEEECCCCCCCC------------------------------CHHHHHHHHHHHHHhC
Confidence 78999999988865321 3677888887777654
No 275
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=91.01 E-value=2.9 Score=44.05 Aligned_cols=111 Identities=15% Similarity=0.103 Sum_probs=71.4
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccH---HHHHHHHHHCCCcEEEEec--CCC---C-CCCccccccccCCCChH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGV---GVVASGVAKGKAEHIVISG--HDG---G-TGASSWTGIKNAGLPWE 298 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi---~~~A~~a~~aGaD~I~VsG--~~G---G-tg~a~~~~~~~~G~p~~ 298 (447)
.++.|.+.+..+++.+|+.||++=++.+... ...+..+.++|||+|.+-= ..+ + .|. ..+. ..
T Consensus 96 g~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~-------~~gq-~~ 167 (385)
T PLN02495 96 PFETMLAEFKQLKEEYPDRILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGA-------AVGQ-DC 167 (385)
T ss_pred CHHHHHHHHHHHHhhCCCCcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccch-------hhcc-CH
Confidence 4567777888888888888998886431222 2466778889999998631 111 1 111 1121 23
Q ss_pred HHHHHHHHHHHhcCCCCceEEEE--cCCCCChHHHHH-HHHcCCCeeccChHHH
Q psy10999 299 LGVAETHQVLALNNLRSRVVLQA--DGQIRTGFDVVV-AALLGADEIGLSTAPL 349 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~via--dGGIrtg~Dv~k-AlaLGAd~V~iGt~~L 349 (447)
+.+.++.+++++. .++||++ +--+.+-.++++ |...|||+|.+-..+.
T Consensus 168 e~~~~i~~~Vk~~---~~iPv~vKLsPn~t~i~~ia~aa~~~Gadgi~liNT~~ 218 (385)
T PLN02495 168 DLLEEVCGWINAK---ATVPVWAKMTPNITDITQPARVALKSGCEGVAAINTIM 218 (385)
T ss_pred HHHHHHHHHHHHh---hcCceEEEeCCChhhHHHHHHHHHHhCCCEEEEecccC
Confidence 6677776666543 1588887 556667777887 6678999998766543
No 276
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=91.00 E-value=0.5 Score=50.55 Aligned_cols=67 Identities=19% Similarity=0.214 Sum_probs=49.6
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..+..+.++|+|+|.|+-..|.+ .-+...+.++.+.. .+++|++ |.+.|..++..++.+||
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~------------~~~~~~i~~i~~~~------~~~~vi~-G~v~t~~~a~~l~~aGa 287 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHS------------IYVIDSIKEIKKTY------PDLDIIA-GNVATAEQAKALIDAGA 287 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcH------------hHHHHHHHHHHHhC------CCCCEEE-EeCCCHHHHHHHHHhCC
Confidence 45667889999999999876532 11334444444431 2588887 99999999999999999
Q ss_pred CeeccC
Q psy10999 340 DEIGLS 345 (447)
Q Consensus 340 d~V~iG 345 (447)
|++.+|
T Consensus 288 d~i~vg 293 (450)
T TIGR01302 288 DGLRVG 293 (450)
T ss_pred CEEEEC
Confidence 999765
No 277
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=90.97 E-value=0.88 Score=49.91 Aligned_cols=77 Identities=19% Similarity=0.124 Sum_probs=53.7
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCCh-----------H
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTG-----------F 329 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg-----------~ 329 (447)
.|+.-.+.|||-|++=.-.|-.. ++ .--.|....+.++.+.+ .+||.+-|||||- .
T Consensus 272 ~a~~y~~~Gadel~~~Di~~~~~-~~-----~~~~~~~~~i~~i~~~~-------~ip~~vGGGIr~~~d~~~~~~~~~e 338 (538)
T PLN02617 272 LAGQYYKDGADEVAFLNITGFRD-FP-----LGDLPMLEVLRRASENV-------FVPLTVGGGIRDFTDANGRYYSSLE 338 (538)
T ss_pred HHHHHHHcCCCEEEEEECCCCcC-Cc-----ccchhHHHHHHHHHhhC-------CCCEEEcCCccccccccccccchHH
Confidence 45566789999776554443110 00 01124556677776654 5999999999998 5
Q ss_pred HHHHHHHcCCCeeccChHHHH
Q psy10999 330 DVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 330 Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
++-+.|..|||-|.+||..+.
T Consensus 339 ~~~~~l~~GadkV~i~s~Av~ 359 (538)
T PLN02617 339 VASEYFRSGADKISIGSDAVY 359 (538)
T ss_pred HHHHHHHcCCCEEEEChHHHh
Confidence 589999999999999996554
No 278
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=90.82 E-value=2.2 Score=42.30 Aligned_cols=91 Identities=15% Similarity=0.133 Sum_probs=59.4
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCChH---HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHH----HHH
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE---LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVV----VAA 335 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~---~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~----kAl 335 (447)
..+.+.|+|+|.+-|+.|-. ..+... ..+..+.+.. .+++||++.-|=-+-.+.+ .|-
T Consensus 25 ~~l~~~Gv~gi~~~GstGE~----------~~ls~~Er~~l~~~~~~~~-----~~~~~vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 25 EFLIEAGVDGLVVLGTTGEA----------PTLTDEERKEVIEAVVEAV-----AGRVPVIAGVGANSTREAIELARHAE 89 (281)
T ss_pred HHHHHcCCCEEEECCCCccc----------ccCCHHHHHHHHHHHHHHh-----CCCCeEEEecCCccHHHHHHHHHHHH
Confidence 34566799999998875542 123332 3333344432 3579999866554555443 567
Q ss_pred HcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy10999 336 LLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEV 398 (447)
Q Consensus 336 aLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~El 398 (447)
.+|||++++..|+.+.. .++++.+|+..+.+..
T Consensus 90 ~~Gad~v~v~pP~y~~~------------------------------~~~~~~~~~~~ia~~~ 122 (281)
T cd00408 90 EAGADGVLVVPPYYNKP------------------------------SQEGIVAHFKAVADAS 122 (281)
T ss_pred HcCCCEEEECCCcCCCC------------------------------CHHHHHHHHHHHHhcC
Confidence 78999999998876532 3688888888887753
No 279
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=90.71 E-value=3.4 Score=42.38 Aligned_cols=108 Identities=15% Similarity=0.079 Sum_probs=63.2
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeec--cHHHHHHHHHHCCCcEEEEecC--CCCCCCccccccccCCCChHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEV--GVGVVASGVAKGKAEHIVISGH--DGGTGASSWTGIKNAGLPWELGVAE 303 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~--Gi~~~A~~a~~aGaD~I~VsG~--~GGtg~a~~~~~~~~G~p~~~~L~e 303 (447)
+++.|.+.+..+++.. ++||++++.... .....++.+.++|+|+|.+--. .+..+. .|......+.+
T Consensus 85 g~d~~~~~i~~~~~~~-~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~--------~g~~~~~~~~e 155 (334)
T PRK07565 85 GPEEYLELIRRAKEAV-DIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDI--------SGAEVEQRYLD 155 (334)
T ss_pred CHHHHHHHHHHHHHhc-CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCC--------ccccHHHHHHH
Confidence 3567778888887654 579999975321 1224556677899999988321 111100 12112222344
Q ss_pred HHHHHHhcCCCCceEEEEc--CCCCChHHHHHHH-HcCCCeeccChH
Q psy10999 304 THQVLALNNLRSRVVLQAD--GQIRTGFDVVVAA-LLGADEIGLSTA 347 (447)
Q Consensus 304 v~~~l~~~glr~~v~viad--GGIrtg~Dv~kAl-aLGAd~V~iGt~ 347 (447)
+.+.+.+. -++||++= +++.+-.++++++ ..|||+|.+...
T Consensus 156 il~~v~~~---~~iPV~vKl~p~~~~~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 156 ILRAVKSA---VSIPVAVKLSPYFSNLANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred HHHHHHhc---cCCcEEEEeCCCchhHHHHHHHHHHcCCCeEEEECC
Confidence 44444332 15888874 5555667888866 589999876433
No 280
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=90.64 E-value=0.69 Score=50.70 Aligned_cols=75 Identities=16% Similarity=-0.047 Sum_probs=54.9
Q ss_pred HHHHHHHHHCCCcEEEEecCCC-CCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH-
Q psy10999 259 GVVASGVAKGKAEHIVISGHDG-GTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL- 336 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~G-Gtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla- 336 (447)
.+.++.+.+.||.-|.+..-+- ||. .| +.+..+..+.+.. .+|||++||+.+..|+..++.
T Consensus 441 ~~~~~~~~~~Gageil~t~id~DGt~---------~G-~d~~l~~~v~~~~-------~ipviasGG~g~~~d~~~~~~~ 503 (538)
T PLN02617 441 YELAKAVEELGAGEILLNCIDCDGQG---------KG-FDIELVKLVSDAV-------TIPVIASSGAGTPEHFSDVFSK 503 (538)
T ss_pred HHHHHHHHhcCCCEEEEeeccccccc---------cC-cCHHHHHHHHhhC-------CCCEEEECCCCCHHHHHHHHhc
Confidence 3567888999999887754421 221 12 3455566666553 699999999999999999997
Q ss_pred cCCCeeccChHHHH
Q psy10999 337 LGADEIGLSTAPLI 350 (447)
Q Consensus 337 LGAd~V~iGt~~L~ 350 (447)
-|||++..|+.|-+
T Consensus 504 ~~~~a~~aa~~fh~ 517 (538)
T PLN02617 504 TNASAALAAGIFHR 517 (538)
T ss_pred CCccEEEEEeeecc
Confidence 67999988887654
No 281
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=90.61 E-value=2.7 Score=39.59 Aligned_cols=90 Identities=20% Similarity=0.226 Sum_probs=57.5
Q ss_pred HHHHHHHHHhCCCCceE--EEEeeeccHHH-HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 233 AELIYDLKCANPNARIS--VKLVSEVGVGV-VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 233 ~~~I~~Lr~~~p~~pI~--VKlv~~~Gi~~-~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
.+.|++||+..|+..+. +|+. +.+. .+..+.++|||+|++....+ + ..+.++.+..+
T Consensus 40 ~~~i~~l~~~~~~~~i~~d~k~~---d~~~~~~~~~~~~Gad~i~vh~~~~---------------~--~~~~~~i~~~~ 99 (206)
T TIGR03128 40 IEAVKEMKEAFPDRKVLADLKTM---DAGEYEAEQAFAAGADIVTVLGVAD---------------D--ATIKGAVKAAK 99 (206)
T ss_pred HHHHHHHHHHCCCCEEEEEEeec---cchHHHHHHHHHcCCCEEEEeccCC---------------H--HHHHHHHHHHH
Confidence 36788998887654443 4544 3443 47788999999999865311 0 12344555555
Q ss_pred hcCCCCceEEEEc-CCCCCh-HHHHHHHHcCCCeeccCh
Q psy10999 310 LNNLRSRVVLQAD-GQIRTG-FDVVVAALLGADEIGLST 346 (447)
Q Consensus 310 ~~glr~~v~viad-GGIrtg-~Dv~kAlaLGAd~V~iGt 346 (447)
++| ++++++ -+..+. .++..+..+|+|.|.+.+
T Consensus 100 ~~g----~~~~~~~~~~~t~~~~~~~~~~~g~d~v~~~p 134 (206)
T TIGR03128 100 KHG----KEVQVDLINVKDKVKRAKELKELGADYIGVHT 134 (206)
T ss_pred HcC----CEEEEEecCCCChHHHHHHHHHcCCCEEEEcC
Confidence 444 667765 355554 667778888999997743
No 282
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=90.53 E-value=1.5 Score=39.86 Aligned_cols=67 Identities=18% Similarity=0.139 Sum_probs=54.2
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
+.+..|.+..+|.|.||+..|+- ....+.+++.|.+.|+. +|. +..||+-...|..+-..+|.
T Consensus 54 e~v~aA~~~dv~vIgvSsl~g~h---------------~~l~~~lve~lre~G~~-~i~-v~~GGvip~~d~~~l~~~G~ 116 (143)
T COG2185 54 EAVRAAVEEDVDVIGVSSLDGGH---------------LTLVPGLVEALREAGVE-DIL-VVVGGVIPPGDYQELKEMGV 116 (143)
T ss_pred HHHHHHHhcCCCEEEEEeccchH---------------HHHHHHHHHHHHHhCCc-ceE-EeecCccCchhHHHHHHhCc
Confidence 34556678999999999997762 35678899999999965 454 68899999999888888999
Q ss_pred Ceec
Q psy10999 340 DEIG 343 (447)
Q Consensus 340 d~V~ 343 (447)
+.++
T Consensus 117 ~~if 120 (143)
T COG2185 117 DRIF 120 (143)
T ss_pred ceee
Confidence 9874
No 283
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=90.50 E-value=1.9 Score=43.88 Aligned_cols=94 Identities=21% Similarity=0.245 Sum_probs=57.7
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHH----HHHHcC
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVV----VAALLG 338 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~----kAlaLG 338 (447)
..+.+.|+|+|.+-|..|-. ..+..++-..-+..+++. +.+++|||+-=|=.+-.|++ .|-.+|
T Consensus 36 ~~li~~Gv~Gi~v~GstGE~----------~~Lt~eEr~~v~~~~~~~--~~grvpvi~Gv~~~~t~~ai~~a~~A~~~G 103 (309)
T cd00952 36 ERLIAAGVDGILTMGTFGEC----------ATLTWEEKQAFVATVVET--VAGRVPVFVGATTLNTRDTIARTRALLDLG 103 (309)
T ss_pred HHHHHcCCCEEEECcccccc----------hhCCHHHHHHHHHHHHHH--hCCCCCEEEEeccCCHHHHHHHHHHHHHhC
Confidence 44567999999998875542 122332222222222222 24589999865544445543 456689
Q ss_pred CCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy10999 339 ADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEV 398 (447)
Q Consensus 339 Ad~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~El 398 (447)
||++++-.|+.+.. .++++..|++.+.+..
T Consensus 104 ad~vlv~~P~y~~~------------------------------~~~~l~~yf~~va~a~ 133 (309)
T cd00952 104 ADGTMLGRPMWLPL------------------------------DVDTAVQFYRDVAEAV 133 (309)
T ss_pred CCEEEECCCcCCCC------------------------------CHHHHHHHHHHHHHhC
Confidence 99999999875422 3678888887776654
No 284
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=90.12 E-value=1.2 Score=48.25 Aligned_cols=75 Identities=21% Similarity=0.123 Sum_probs=50.7
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCC-hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP-WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p-~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
.++..+.+.|+|+|.++=. --|.. +....| -...+.+..+. -++||++-||| +..++...+..|
T Consensus 401 ~e~~~a~~~gadyi~~gpi-f~t~t------k~~~~~~g~~~~~~~~~~-------~~~Pv~aiGGI-~~~~~~~~~~~G 465 (502)
T PLN02898 401 EQAEQAWKDGADYIGCGGV-FPTNT------KANNKTIGLDGLREVCEA-------SKLPVVAIGGI-SASNAASVMESG 465 (502)
T ss_pred HHHHHHhhcCCCEEEECCe-ecCCC------CCCCCCCCHHHHHHHHHc-------CCCCEEEECCC-CHHHHHHHHHcC
Confidence 4566777899999987422 11211 111112 23444544332 26999999999 589999999999
Q ss_pred CC---eeccChHHH
Q psy10999 339 AD---EIGLSTAPL 349 (447)
Q Consensus 339 Ad---~V~iGt~~L 349 (447)
|+ +|.+++.++
T Consensus 466 ~~~~~gvav~~~i~ 479 (502)
T PLN02898 466 APNLKGVAVVSALF 479 (502)
T ss_pred CCcCceEEEEeHHh
Confidence 99 999999876
No 285
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=89.95 E-value=6 Score=38.46 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCCh-HHHHHHHHHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW-ELGVAETHQV 307 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~-~~~L~ev~~~ 307 (447)
.++..+.++.-++. +..+.+=++........++.+.++|+|.+.+ |-|.- ..-.|..| +.-|..+.+.
T Consensus 92 ~~TI~~~i~~A~~~--~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~--H~g~D-------~q~~G~~~~~~~l~~ik~~ 160 (217)
T COG0269 92 DATIKKAIKVAKEY--GKEVQIDLIGVWDPEQRAKWLKELGVDQVIL--HRGRD-------AQAAGKSWGEDDLEKIKKL 160 (217)
T ss_pred HHHHHHHHHHHHHc--CCeEEEEeecCCCHHHHHHHHHHhCCCEEEE--Eeccc-------HhhcCCCccHHHHHHHHHh
Confidence 35566677777775 4567777664333444556666799999987 32321 11246655 5666666654
Q ss_pred HHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 308 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 308 l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
. . ..+.|-++||| ++.++-....+|++.|.+||+.-
T Consensus 161 ~-~----~g~~vAVaGGI-~~~~i~~~~~~~~~ivIvGraIt 196 (217)
T COG0269 161 S-D----LGAKVAVAGGI-TPEDIPLFKGIGADIVIVGRAIT 196 (217)
T ss_pred h-c----cCceEEEecCC-CHHHHHHHhcCCCCEEEECchhc
Confidence 3 1 23789999999 68999999999999999999753
No 286
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=89.78 E-value=2.5 Score=42.49 Aligned_cols=75 Identities=16% Similarity=0.030 Sum_probs=44.7
Q ss_pred HHHHCC-CcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHH----HHHHcC
Q psy10999 264 GVAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVV----VAALLG 338 (447)
Q Consensus 264 ~a~~aG-aD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~----kAlaLG 338 (447)
.+.+.| +|+|.+.|..|-. +.+..++-..-+..+++. ..+++||++.=|=.+-.|++ .|-.+|
T Consensus 29 ~~i~~G~v~gi~~~GstGE~----------~~Lt~eEr~~~~~~~~~~--~~~~~pvi~gv~~~~t~~~i~la~~a~~~G 96 (290)
T TIGR00683 29 HNIDKMKVDGLYVGGSTGEN----------FMLSTEEKKEIFRIAKDE--AKDQIALIAQVGSVNLKEAVELGKYATELG 96 (290)
T ss_pred HHHhCCCcCEEEECCccccc----------ccCCHHHHHHHHHHHHHH--hCCCCcEEEecCCCCHHHHHHHHHHHHHhC
Confidence 456788 9999998875532 233333333322222222 23579998864422334432 457799
Q ss_pred CCeeccChHHHH
Q psy10999 339 ADEIGLSTAPLI 350 (447)
Q Consensus 339 Ad~V~iGt~~L~ 350 (447)
||++.+..|+.+
T Consensus 97 ad~v~v~~P~y~ 108 (290)
T TIGR00683 97 YDCLSAVTPFYY 108 (290)
T ss_pred CCEEEEeCCcCC
Confidence 999999888754
No 287
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.56 E-value=2.1 Score=41.69 Aligned_cols=89 Identities=15% Similarity=0.056 Sum_probs=55.5
Q ss_pred HHHHHHH----HhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 234 ELIYDLK----CANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 234 ~~I~~Lr----~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
+.|+.|+ +..|++-|++-.|. ....++.+.++|++||+--|. -+++.+.+.
T Consensus 55 ~~i~~l~~~~~~~~p~~~vGaGTVl---~~e~a~~a~~aGA~FiVsP~~----------------------~~~v~~~~~ 109 (222)
T PRK07114 55 EVFAELVKYAAKELPGMILGVGSIV---DAATAALYIQLGANFIVTPLF----------------------NPDIAKVCN 109 (222)
T ss_pred HHHHHHHHHHHhhCCCeEEeeEeCc---CHHHHHHHHHcCCCEEECCCC----------------------CHHHHHHHH
Confidence 4455554 44555444443221 345778899999999975332 123334443
Q ss_pred hcCCCCceEEEEcCCCCChHHHHHHHHcCCCee------ccChHHHHHhc
Q psy10999 310 LNNLRSRVVLQADGQIRTGFDVVVAALLGADEI------GLSTAPLITMG 353 (447)
Q Consensus 310 ~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V------~iGt~~L~alg 353 (447)
++ +++ .-=|+.|+.++..|+.+||+.| .+|-.++-++.
T Consensus 110 ~~----~i~--~iPG~~TpsEi~~A~~~Ga~~vKlFPA~~~G~~~ikal~ 153 (222)
T PRK07114 110 RR----KVP--YSPGCGSLSEIGYAEELGCEIVKLFPGSVYGPGFVKAIK 153 (222)
T ss_pred Hc----CCC--EeCCCCCHHHHHHHHHCCCCEEEECcccccCHHHHHHHh
Confidence 33 344 4469999999999999999855 44666666654
No 288
>PRK06852 aldolase; Validated
Probab=89.55 E-value=3.5 Score=42.09 Aligned_cols=70 Identities=14% Similarity=-0.041 Sum_probs=46.1
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCCh-HHH----HHHH
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTG-FDV----VVAA 335 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg-~Dv----~kAl 335 (447)
.+..+++.|||+|.+.=. + .. .-| ..+.+.++++.+ .++||+++||=++. .|+ ..++
T Consensus 193 aaRiaaELGADIVKv~y~-~-~~--------~~g--~~e~f~~vv~~~------g~vpVviaGG~k~~~~e~L~~v~~ai 254 (304)
T PRK06852 193 AAGVAACLGADFVKVNYP-K-KE--------GAN--PAELFKEAVLAA------GRTKVVCAGGSSTDPEEFLKQLYEQI 254 (304)
T ss_pred HHHHHHHHcCCEEEecCC-C-cC--------CCC--CHHHHHHHHHhC------CCCcEEEeCCCCCCHHHHHHHHHHHH
Confidence 345678999999988422 1 00 001 125677776653 26999999999964 233 3466
Q ss_pred H-cCCCeeccChHH
Q psy10999 336 L-LGADEIGLSTAP 348 (447)
Q Consensus 336 a-LGAd~V~iGt~~ 348 (447)
. -||.++.+||=.
T Consensus 255 ~~aGa~Gv~~GRNI 268 (304)
T PRK06852 255 HISGASGNATGRNI 268 (304)
T ss_pred HHcCCceeeechhh
Confidence 7 899999999843
No 289
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=89.44 E-value=1.8 Score=41.74 Aligned_cols=77 Identities=16% Similarity=0.019 Sum_probs=51.5
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCcccccccc-CCCC-hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKN-AGLP-WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~-~G~p-~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
..+..+.+.|+|+|.++---. |-. +. ...| ....+.++.+.+ .++||++-|||. ..++...+..
T Consensus 113 ~e~~~A~~~gaDYi~lgpvf~-T~t------K~~~~~~~G~~~l~~~~~~~------~~~PV~AiGGI~-~~ni~~l~~~ 178 (211)
T PRK03512 113 MEIDVALAARPSYIALGHVFP-TQT------KQMPSAPQGLAQLARHVERL------ADYPTVAIGGIS-LERAPAVLAT 178 (211)
T ss_pred HHHHHHhhcCCCEEEECCccC-CCC------CCCCCCCCCHHHHHHHHHhc------CCCCEEEECCCC-HHHHHHHHHc
Confidence 456677789999999954321 210 11 1111 223444444321 259999999995 8999999999
Q ss_pred CCCeeccChHHHH
Q psy10999 338 GADEIGLSTAPLI 350 (447)
Q Consensus 338 GAd~V~iGt~~L~ 350 (447)
||++|.+-+.++.
T Consensus 179 Ga~GiAvisai~~ 191 (211)
T PRK03512 179 GVGSIAVVSAITQ 191 (211)
T ss_pred CCCEEEEhhHhhC
Confidence 9999999988763
No 290
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=89.33 E-value=3.5 Score=40.08 Aligned_cols=46 Identities=17% Similarity=0.290 Sum_probs=30.1
Q ss_pred HHHHHHHHhCCCCceEEEE--eeeccHHHHHHHHHHCCCcEEEEecCCC
Q psy10999 234 ELIYDLKCANPNARISVKL--VSEVGVGVVASGVAKGKAEHIVISGHDG 280 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKl--v~~~Gi~~~A~~a~~aGaD~I~VsG~~G 280 (447)
+.|++||+.+..+++-+|+ +... ....+..+.++|+|+|+|-+..|
T Consensus 44 ~~i~~l~~~~~~i~~D~Kl~Di~~t-~~~~i~~~~~~gad~itvH~~ag 91 (230)
T PRK00230 44 QFVRELKQRGFKVFLDLKLHDIPNT-VAKAVRALAKLGVDMVNVHASGG 91 (230)
T ss_pred HHHHHHHhcCCCEEEEeehhhcccc-HHHHHHHHHHcCCCEEEEcccCC
Confidence 5678888764456788897 3311 12234457789999999976533
No 291
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=89.25 E-value=1.1 Score=48.48 Aligned_cols=68 Identities=16% Similarity=0.125 Sum_probs=50.1
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..+..+.++|+|.|+|+-..|.. ......+..+++.. .++|||+ |-+.|..++..++.+||
T Consensus 228 ~ra~~Lv~aGVd~i~~D~a~g~~------------~~~~~~i~~i~~~~------~~~~vi~-g~~~t~~~~~~l~~~G~ 288 (475)
T TIGR01303 228 GKAKALLDAGVDVLVIDTAHGHQ------------VKMISAIKAVRALD------LGVPIVA-GNVVSAEGVRDLLEAGA 288 (475)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCc------------HHHHHHHHHHHHHC------CCCeEEE-eccCCHHHHHHHHHhCC
Confidence 45667889999999999876542 12344455554431 2589998 77999999999999999
Q ss_pred CeeccCh
Q psy10999 340 DEIGLST 346 (447)
Q Consensus 340 d~V~iGt 346 (447)
|+|-+|-
T Consensus 289 d~i~vg~ 295 (475)
T TIGR01303 289 NIIKVGV 295 (475)
T ss_pred CEEEECC
Confidence 9987663
No 292
>PRK03903 transaldolase; Provisional
Probab=88.96 E-value=12 Score=37.70 Aligned_cols=56 Identities=5% Similarity=-0.061 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEcCCCCC----hHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 297 WELGVAETHQVLALNNLRSRVVLQADGQIRT----GFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 297 ~~~~L~ev~~~l~~~glr~~v~viadGGIrt----g~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
.+....++++.++.+|.+..-.|++|-|+++ ...++.++..|++.+-+.-..+-++
T Consensus 158 gIa~a~~~y~~~~~~g~~~~riL~AStg~Kn~~~~~~~yv~~L~~g~~v~T~P~~tl~a~ 217 (274)
T PRK03903 158 GIMNATKCYNQIEQHANKNIRTLFASTGVKGDDLPKDYYIKELLFKNSINTAPLDTIEAF 217 (274)
T ss_pred HHHHHHHHHHHHHHcCCCCcEEEEEecccCCCCCChHHHHHHHhCCCCeeeCCHHHHHHH
Confidence 4455667777777777666667888999999 9999999999999887776666554
No 293
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=88.81 E-value=3.2 Score=41.68 Aligned_cols=94 Identities=17% Similarity=0.088 Sum_probs=57.6
Q ss_pred HHHHH-CCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHH----HHHHHc
Q psy10999 263 SGVAK-GKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDV----VVAALL 337 (447)
Q Consensus 263 ~~a~~-aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv----~kAlaL 337 (447)
+.+.+ .|+|+|.+-|+.|-. +.+..++=..-+..+++. ..+++|||+-=|=-+-.|+ -.|-.+
T Consensus 31 ~~l~~~~Gv~gi~v~GstGE~----------~~Ls~eEr~~~~~~~~~~--~~~~~~viagvg~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 31 RFNIEKQGIDGLYVGGSTGEA----------FLLSTEEKKQVLEIVAEE--AKGKVKLIAQVGSVNTAEAQELAKYATEL 98 (293)
T ss_pred HHHHhcCCCCEEEECCCcccc----------ccCCHHHHHHHHHHHHHH--hCCCCCEEecCCCCCHHHHHHHHHHHHHc
Confidence 34456 899999998875532 223333322222222222 2457999995554444554 356789
Q ss_pred CCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy10999 338 GADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEV 398 (447)
Q Consensus 338 GAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~El 398 (447)
|||++.+-.|+.+.. .++++.+|++.+.+..
T Consensus 99 Gad~v~v~~P~y~~~------------------------------~~~~l~~~f~~va~a~ 129 (293)
T PRK04147 99 GYDAISAVTPFYYPF------------------------------SFEEICDYYREIIDSA 129 (293)
T ss_pred CCCEEEEeCCcCCCC------------------------------CHHHHHHHHHHHHHhC
Confidence 999999998875321 3677788887776653
No 294
>PRK12376 putative translaldolase; Provisional
Probab=88.71 E-value=13 Score=36.62 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=45.2
Q ss_pred cccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 290 IKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 290 ~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
+++.|......+.++++.+..+ .++.|+++ -+|+..+|.+++..|||.+-+.-..+..+
T Consensus 148 ~dd~g~D~~~~i~~i~~i~~~~---~~tkILaA-SiR~~~~v~~a~~~Gad~vTvp~~v~~~l 206 (236)
T PRK12376 148 IADTGVDPVPLMKEALAICHSK---PGVELLWA-SPREVYNIIQADQLGCDIITVTPDVLKKL 206 (236)
T ss_pred hhhcCCCcHHHHHHHHHHHHhC---CCcEEEEE-ecCCHHHHHHHHHcCCCEEEcCHHHHHHH
Confidence 5577777778888888887643 24555554 59999999999999999998887666543
No 295
>PRK09250 fructose-bisphosphate aldolase; Provisional
Probab=88.70 E-value=4.9 Score=41.74 Aligned_cols=83 Identities=17% Similarity=-0.082 Sum_probs=47.2
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccc--------cccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChH-H--
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSW--------TGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGF-D-- 330 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~--------~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~-D-- 330 (447)
+..+++.|||+|.+.=.+--.++... .+....--.....+..+++.+ .-.++||+++||=+++. |
T Consensus 223 aRiaaELGADIVKv~yp~~~~~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac----~ag~vpVviAGG~k~~~~e~L 298 (348)
T PRK09250 223 NHLAATIGADIIKQKLPTNNGGYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANC----YMGRRGLINSGGASKGEDDLL 298 (348)
T ss_pred HHHHHHHcCCEEEecCCCChhhHHHhhcccccccccccccccchHHHHHHHHHhh----ccCCceEEEeCCCCCCHHHHH
Confidence 44578999999988533110111100 000000112334455555543 12369999999999643 2
Q ss_pred --HHHH---HHcCCCeeccChHH
Q psy10999 331 --VVVA---ALLGADEIGLSTAP 348 (447)
Q Consensus 331 --v~kA---laLGAd~V~iGt~~ 348 (447)
+..+ +.-||.++.+||=.
T Consensus 299 ~~v~~a~~~i~aGa~Gv~iGRNI 321 (348)
T PRK09250 299 DAVRTAVINKRAGGMGLIIGRKA 321 (348)
T ss_pred HHHHHHHHhhhcCCcchhhchhh
Confidence 3457 88999999999843
No 296
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=88.65 E-value=2.3 Score=43.06 Aligned_cols=96 Identities=19% Similarity=0.135 Sum_probs=60.9
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEE-cCCCCChHHH---HHHHHcC
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQA-DGQIRTGFDV---VVAALLG 338 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~via-dGGIrtg~Dv---~kAlaLG 338 (447)
+...+.|+|+|.+-|..|-. +.-+.+ --...+..+.+.. .+++|||+ .|+..|..-+ ..|-.+|
T Consensus 32 ~~li~~Gv~gi~~~GttGE~---~~Ls~e----Er~~v~~~~v~~~-----~grvpviaG~g~~~t~eai~lak~a~~~G 99 (299)
T COG0329 32 EFLIAAGVDGLVVLGTTGES---PTLTLE----ERKEVLEAVVEAV-----GGRVPVIAGVGSNSTAEAIELAKHAEKLG 99 (299)
T ss_pred HHHHHcCCCEEEECCCCccc---hhcCHH----HHHHHHHHHHHHH-----CCCCcEEEecCCCcHHHHHHHHHHHHhcC
Confidence 34567899999998774432 110001 0122334444442 45899999 5555554444 3667799
Q ss_pred CCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHH
Q psy10999 339 ADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSR 400 (447)
Q Consensus 339 Ad~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~ 400 (447)
||++.+-+|+.+-. .++++..++..+.+....
T Consensus 100 ad~il~v~PyY~k~------------------------------~~~gl~~hf~~ia~a~~l 131 (299)
T COG0329 100 ADGILVVPPYYNKP------------------------------SQEGLYAHFKAIAEAVDL 131 (299)
T ss_pred CCEEEEeCCCCcCC------------------------------ChHHHHHHHHHHHHhcCC
Confidence 99999999986532 478888888888887733
No 297
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=88.60 E-value=1 Score=39.78 Aligned_cols=42 Identities=19% Similarity=0.286 Sum_probs=33.3
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCccccccc
Q psy10999 317 VVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQ 372 (447)
Q Consensus 317 v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~ 372 (447)
|+|..+|-+ ++.=|+||+.-|||+|.++. ||.++|...--..
T Consensus 33 Irv~CsGrv-n~~fvl~Al~~GaDGV~v~G-------------C~~geCHy~~GN~ 74 (132)
T COG1908 33 IRVMCSGRV-NPEFVLKALRKGADGVLVAG-------------CKIGECHYISGNY 74 (132)
T ss_pred EEeeccCcc-CHHHHHHHHHcCCCeEEEec-------------ccccceeeeccch
Confidence 788899887 67889999999999998763 7778887544443
No 298
>PRK14057 epimerase; Provisional
Probab=88.47 E-value=5.9 Score=39.47 Aligned_cols=103 Identities=15% Similarity=0.089 Sum_probs=60.5
Q ss_pred HHHHHHHHHHhCCC-------CceEEEEeeeccHHHHHHHHHHCCCcEEEEecCC---CCCCCccccccccCCCChHHHH
Q psy10999 232 LAELIYDLKCANPN-------ARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD---GGTGASSWTGIKNAGLPWELGV 301 (447)
Q Consensus 232 l~~~I~~Lr~~~p~-------~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~---GGtg~a~~~~~~~~G~p~~~~L 301 (447)
+...|.++|+..-+ ...+|-+-+.+.+......+ + -+|.|.|=..+ ||+.+ + .....=+
T Consensus 112 ~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l-~-~vD~VLvMtV~PGfgGQ~F-----i----~~~l~KI 180 (254)
T PRK14057 112 LHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPIL-S-DVEVIQLLAVNPGYGSKMR-----S----SDLHERV 180 (254)
T ss_pred HHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHH-H-hCCEEEEEEECCCCCchhc-----c----HHHHHHH
Confidence 44567888876210 12444444433333332222 2 37888543222 22211 1 1244455
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 302 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 302 ~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
.++.+.+.++++ ++.|.+||||... -+.+..+.|||.+.+|+++
T Consensus 181 ~~lr~~~~~~~~--~~~IeVDGGI~~~-ti~~l~~aGad~~V~GSal 224 (254)
T PRK14057 181 AQLLCLLGDKRE--GKIIVIDGSLTQD-QLPSLIAQGIDRVVSGSAL 224 (254)
T ss_pred HHHHHHHHhcCC--CceEEEECCCCHH-HHHHHHHCCCCEEEEChHh
Confidence 666666666553 5889999999654 7889999999999999864
No 299
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=88.47 E-value=0.66 Score=46.13 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=36.6
Q ss_pred ChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc--CCCeeccChHHHH
Q psy10999 296 PWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL--GADEIGLSTAPLI 350 (447)
Q Consensus 296 p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL--GAd~V~iGt~~L~ 350 (447)
|.++.+.++.+.. ++|||++||+++-.|+.++-.+ |...+.+|+++..
T Consensus 188 ~dlel~~~l~~~~-------~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 188 IDEELVSKLGEWS-------PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred CCHHHHHHHHhhC-------CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 4556666666652 6999999999999999988665 5666888887543
No 300
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=88.43 E-value=1.2 Score=48.15 Aligned_cols=67 Identities=18% Similarity=0.157 Sum_probs=48.3
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..+..+.++|+|+|+++...|.. .-....+.++.+.. .++||++ |++.|..++..++.+||
T Consensus 231 e~a~~L~~agvdvivvD~a~g~~------------~~vl~~i~~i~~~~------p~~~vi~-g~v~t~e~a~~l~~aGa 291 (486)
T PRK05567 231 ERAEALVEAGVDVLVVDTAHGHS------------EGVLDRVREIKAKY------PDVQIIA-GNVATAEAARALIEAGA 291 (486)
T ss_pred HHHHHHHHhCCCEEEEECCCCcc------------hhHHHHHHHHHhhC------CCCCEEE-eccCCHHHHHHHHHcCC
Confidence 45667889999999998754431 11333444444321 2578887 99999999999999999
Q ss_pred CeeccC
Q psy10999 340 DEIGLS 345 (447)
Q Consensus 340 d~V~iG 345 (447)
|+|.+|
T Consensus 292 d~i~vg 297 (486)
T PRK05567 292 DAVKVG 297 (486)
T ss_pred CEEEEC
Confidence 999764
No 301
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=88.37 E-value=3.4 Score=42.61 Aligned_cols=95 Identities=17% Similarity=0.049 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccH--HHHHHHHHHCCC--cEEEEecCCCCCCCccccccccCCCChHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGV--GVVASGVAKGKA--EHIVISGHDGGTGASSWTGIKNAGLPWELGVAE 303 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi--~~~A~~a~~aGa--D~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~e 303 (447)
++|++...+ |+.+|. .+.|-+...+.. ...+..+.++|+ |+|.||-..|.+ ....+.+.+
T Consensus 70 ~~e~~~~~~---r~~~~~-~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~------------~~~~e~I~~ 133 (326)
T PRK05458 70 DPEARIPFI---KDMHEQ-GLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHS------------DSVINMIQH 133 (326)
T ss_pred CHHHHHHHH---Hhcccc-ccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCch------------HHHHHHHHH
Confidence 556654444 666654 334433322111 134556788855 999998775432 123334444
Q ss_pred HHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 304 THQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 304 v~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
+.+.. +.++ ++.|-+.|..++..++.+|||++.+|
T Consensus 134 ir~~~------p~~~-vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 134 IKKHL------PETF-VIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHhhC------CCCe-EEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 44431 2354 44566889999999999999998766
No 302
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=88.19 E-value=3.9 Score=40.90 Aligned_cols=91 Identities=16% Similarity=0.095 Sum_probs=55.9
Q ss_pred HHHHHC-CCcEEEEecCCCCCCCccccccccCCCChH---HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHH---H-HH
Q psy10999 263 SGVAKG-KAEHIVISGHDGGTGASSWTGIKNAGLPWE---LGVAETHQVLALNNLRSRVVLQADGQIRTGFDV---V-VA 334 (447)
Q Consensus 263 ~~a~~a-GaD~I~VsG~~GGtg~a~~~~~~~~G~p~~---~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv---~-kA 334 (447)
+.+.+. |+|+|.+-|+.|-. .-++.+ ..+..+.+. +++++|||+-=|=-+-.|+ + .|
T Consensus 28 ~~l~~~~Gv~gi~~~GstGE~----------~~Lt~~Er~~~~~~~~~~-----~~~~~~viagv~~~~~~~ai~~a~~a 92 (288)
T cd00954 28 DYLIEKQGVDGLYVNGSTGEG----------FLLSVEERKQIAEIVAEA-----AKGKVTLIAHVGSLNLKESQELAKHA 92 (288)
T ss_pred HHHHhcCCCCEEEECcCCcCc----------ccCCHHHHHHHHHHHHHH-----hCCCCeEEeccCCCCHHHHHHHHHHH
Confidence 344567 99999998875542 123322 233333343 2357999983332233333 2 56
Q ss_pred HHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy10999 335 ALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEV 398 (447)
Q Consensus 335 laLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~El 398 (447)
..+|||++++-.|+.+.. .++++..|++.+.+..
T Consensus 93 ~~~Gad~v~~~~P~y~~~------------------------------~~~~i~~~~~~v~~a~ 126 (288)
T cd00954 93 EELGYDAISAITPFYYKF------------------------------SFEEIKDYYREIIAAA 126 (288)
T ss_pred HHcCCCEEEEeCCCCCCC------------------------------CHHHHHHHHHHHHHhc
Confidence 789999999988864321 3677888888877654
No 303
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=88.06 E-value=3.1 Score=40.05 Aligned_cols=58 Identities=26% Similarity=0.353 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEe--cCCCCCCC
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVIS--GHDGGTGA 284 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~Vs--G~~GGtg~ 284 (447)
-++++..++|..+|+.+|+.+|.+-.--..|.+. -+..+.++|+|.|.++ |-|+++|.
T Consensus 163 ~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~~~Gn 223 (237)
T PF00682_consen 163 MTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGERAGN 223 (237)
T ss_dssp S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSSTTSB
T ss_pred cCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCCCCCC
Confidence 4577888999999999988888887554556664 3556889999999665 66666543
No 304
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=88.02 E-value=1.1 Score=44.51 Aligned_cols=71 Identities=15% Similarity=0.032 Sum_probs=50.8
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
....|....++||+.|-|--- +. .+|- ..+-|..+...+ ++||+.-..|-+..+|..|.++
T Consensus 63 ~~~~A~~y~~~GA~aISVlTe-~~----------~F~G-s~~~l~~v~~~v-------~~PvL~KDFIid~~QI~ea~~~ 123 (247)
T PRK13957 63 PVQIAKTYETLGASAISVLTD-QS----------YFGG-SLEDLKSVSSEL-------KIPVLRKDFILDEIQIREARAF 123 (247)
T ss_pred HHHHHHHHHHCCCcEEEEEcC-CC----------cCCC-CHHHHHHHHHhc-------CCCEEeccccCCHHHHHHHHHc
Confidence 345677888999999966432 11 1111 124466666653 5899999999999999999999
Q ss_pred CCCeeccChH
Q psy10999 338 GADEIGLSTA 347 (447)
Q Consensus 338 GAd~V~iGt~ 347 (447)
|||+|.+=-.
T Consensus 124 GADavLLI~~ 133 (247)
T PRK13957 124 GASAILLIVR 133 (247)
T ss_pred CCCEEEeEHh
Confidence 9999955433
No 305
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=87.95 E-value=3.8 Score=41.19 Aligned_cols=72 Identities=19% Similarity=0.061 Sum_probs=44.4
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHH---HHHHHHHHHhcCCCCceEEEEcCCCCChHHHH----HHH
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELG---VAETHQVLALNNLRSRVVLQADGQIRTGFDVV----VAA 335 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~---L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~----kAl 335 (447)
..+.+.|+|+|.+-|+.|-. .-+..++= +..+.+. +.+++||++.=|- +-.+.+ .|-
T Consensus 33 ~~l~~~Gv~gi~v~GstGE~----------~~Lt~eEr~~v~~~~~~~-----~~g~~pvi~gv~~-~t~~ai~~a~~a~ 96 (296)
T TIGR03249 33 EWLLGYGLEALFAAGGTGEF----------FSLTPAEYEQVVEIAVST-----AKGKVPVYTGVGG-NTSDAIEIARLAE 96 (296)
T ss_pred HHHHhcCCCEEEECCCCcCc----------ccCCHHHHHHHHHHHHHH-----hCCCCcEEEecCc-cHHHHHHHHHHHH
Confidence 44567999999998875532 12333322 2333333 2457999986553 433432 456
Q ss_pred HcCCCeeccChHHHH
Q psy10999 336 LLGADEIGLSTAPLI 350 (447)
Q Consensus 336 aLGAd~V~iGt~~L~ 350 (447)
.+|||++++-.|+.+
T Consensus 97 ~~Gadav~~~pP~y~ 111 (296)
T TIGR03249 97 KAGADGYLLLPPYLI 111 (296)
T ss_pred HhCCCEEEECCCCCC
Confidence 699999999887754
No 306
>COG0176 MipB Transaldolase [Carbohydrate transport and metabolism]
Probab=87.94 E-value=23 Score=35.02 Aligned_cols=132 Identities=23% Similarity=0.207 Sum_probs=82.1
Q ss_pred hhcCCCCcccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeee-ccHHH--------------------HHHHH
Q psy10999 207 STRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSE-VGVGV--------------------VASGV 265 (447)
Q Consensus 207 ~~r~~~~g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~-~Gi~~--------------------~A~~a 265 (447)
+..+..||.-..+.+... ++-+...+.-++|.+..++.-|.||+.+. .|+.. .|..+
T Consensus 55 ei~~~v~G~v~e~~~~ls--~d~e~mi~eA~~L~~~~~~~~i~IKIP~T~eGl~Ai~~L~~eGI~~NvTLiFS~~QAl~a 132 (239)
T COG0176 55 EILKIVPGRVTEVDEVLS--FDAEAMIEEARRLAKLIDNVGIVIKIPATWEGLKAIKALEAEGIKTNVTLIFSAAQALLA 132 (239)
T ss_pred HHHhcCCCCCeEeeeeec--ccHHHHHHHHHHHHHhcCcCCeEEEeCCCHHHHHHHHHHHHCCCeeeEEEEecHHHHHHH
Confidence 444555653233333221 12344444555666666665589998762 23321 23345
Q ss_pred HHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 266 AKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 266 ~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
+++|+++| |=.=|| ++|||.-...++.++.+....++.. ...+++ =+.+++.++..+...|||.+-+.
T Consensus 133 a~aga~~i--SpFvgR--------i~D~~~d~~~~I~~~~~iy~~y~~~-~~~t~v-as~~~~~~~~~~~l~G~d~~Tip 200 (239)
T COG0176 133 AEAGATYI--SPFVGR--------IDDWGIDGMLGIAEAREIYDYYKQH-GAKTLV-ASARFPNHVYIAALAGADVLTIP 200 (239)
T ss_pred HHhCCeEE--Eeecch--------HHhhccCchHHHHHHHHHHHHhccc-cceEEE-ecCccHHHHHHHHHhCCCcccCC
Confidence 67787776 333344 5788887777888888887765532 134444 46899999999999999998887
Q ss_pred hHHHHHh
Q psy10999 346 TAPLITM 352 (447)
Q Consensus 346 t~~L~al 352 (447)
-..+-.+
T Consensus 201 ~~~l~~l 207 (239)
T COG0176 201 PDLLKQL 207 (239)
T ss_pred HHHHHHH
Confidence 7666554
No 307
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=87.70 E-value=5.6 Score=38.04 Aligned_cols=93 Identities=19% Similarity=0.082 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCCCceEEEEe--------eeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHH
Q psy10999 234 ELIYDLKCANPNARISVKLV--------SEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETH 305 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv--------~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~ 305 (447)
+.|+.+|+.. +.|++..+- --.+....+..+.++|||+|+++...... | .+... .++.
T Consensus 46 ~~i~~i~~~~-~~Pil~~~~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~---p------~~~~~----~~~i 111 (221)
T PRK01130 46 EDIKAIRAVV-DVPIIGIIKRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR---P------DGETL----AELV 111 (221)
T ss_pred HHHHHHHHhC-CCCEEEEEecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC---C------CCCCH----HHHH
Confidence 4567777764 678763321 01123446778899999999987642210 0 01122 2333
Q ss_pred HHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 306 QVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 306 ~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
+.++++ ..+++++ ++.|..++.++..+|+|.+.++
T Consensus 112 ~~~~~~---~~i~vi~--~v~t~ee~~~a~~~G~d~i~~~ 146 (221)
T PRK01130 112 KRIKEY---PGQLLMA--DCSTLEEGLAAQKLGFDFIGTT 146 (221)
T ss_pred HHHHhC---CCCeEEE--eCCCHHHHHHHHHcCCCEEEcC
Confidence 443331 2577775 5679999999999999998664
No 308
>PRK06801 hypothetical protein; Provisional
Probab=87.69 E-value=9.6 Score=38.57 Aligned_cols=76 Identities=20% Similarity=0.155 Sum_probs=54.2
Q ss_pred HHHHHH-HCCCcEEEEecCCCCCCCccccccccCCC--ChHHHHHHHHHHHHhcCCCCceEEEEcCC--CCChHHHHHHH
Q psy10999 261 VASGVA-KGKAEHIVISGHDGGTGASSWTGIKNAGL--PWELGVAETHQVLALNNLRSRVVLQADGQ--IRTGFDVVVAA 335 (447)
Q Consensus 261 ~A~~a~-~aGaD~I~VsG~~GGtg~a~~~~~~~~G~--p~~~~L~ev~~~l~~~glr~~v~viadGG--Irtg~Dv~kAl 335 (447)
.|.... +.|+|++-|+ . |.+|.-. .+. .....|.++++.+ ++||.+-|| |. ..++.+++
T Consensus 160 ~a~~f~~~tgvD~LAva-i-Gt~Hg~y------~~~~~l~~e~l~~i~~~~-------~~PLVlHGGSgi~-~e~~~~~i 223 (286)
T PRK06801 160 LARDFVDRTGIDALAVA-I-GNAHGKY------KGEPKLDFARLAAIHQQT-------GLPLVLHGGSGIS-DADFRRAI 223 (286)
T ss_pred HHHHHHHHHCcCEEEec-c-CCCCCCC------CCCCCCCHHHHHHHHHhc-------CCCEEEECCCCCC-HHHHHHHH
Confidence 444444 7899999993 3 4454421 122 2456677776653 589999999 65 57899999
Q ss_pred HcCCCeeccChHHHHHh
Q psy10999 336 LLGADEIGLSTAPLITM 352 (447)
Q Consensus 336 aLGAd~V~iGt~~L~al 352 (447)
.+|++.|.++|.+..+.
T Consensus 224 ~~Gi~KINv~T~~~~a~ 240 (286)
T PRK06801 224 ELGIHKINFYTGMSQAA 240 (286)
T ss_pred HcCCcEEEehhHHHHHH
Confidence 99999999999987764
No 309
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=87.48 E-value=5 Score=40.04 Aligned_cols=73 Identities=19% Similarity=0.169 Sum_probs=45.6
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCChH---HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHH----HHH
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE---LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVV----VAA 335 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~---~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~----kAl 335 (447)
..+.+.|+|+|.+-|+.|-. +-++.. ..+..+.+.. .+++||++.=|=.+-.|++ .|-
T Consensus 26 ~~l~~~Gv~Gi~~~GstGE~----------~~Ls~~Er~~~~~~~~~~~-----~~~~~vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 26 DFQIENGTDAIVVVGTTGES----------PTLSHEEHKKVIEFVVDLV-----NGRVPVIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred HHHHHcCCCEEEECccCccc----------ccCCHHHHHHHHHHHHHHh-----CCCCeEEEeCCCccHHHHHHHHHHHH
Confidence 44567999999998775532 122322 2333344432 3579998755544445543 466
Q ss_pred HcCCCeeccChHHHH
Q psy10999 336 LLGADEIGLSTAPLI 350 (447)
Q Consensus 336 aLGAd~V~iGt~~L~ 350 (447)
.+|||+|++..|+.+
T Consensus 91 ~~Gad~v~v~pP~y~ 105 (285)
T TIGR00674 91 DVGADGFLVVTPYYN 105 (285)
T ss_pred HcCCCEEEEcCCcCC
Confidence 689999999988754
No 310
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=87.42 E-value=1.5 Score=42.02 Aligned_cols=105 Identities=19% Similarity=0.185 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
++.+.|+.+|+. +..++|=+-+++.+... +... .-+|.|.|=..+-|.+.- .++ .....=+.++++.+.+
T Consensus 93 ~~~~~i~~ik~~--g~k~GialnP~T~~~~~-~~~l-~~vD~VlvMsV~PG~~Gq--~f~----~~~~~KI~~l~~~~~~ 162 (201)
T PF00834_consen 93 DPKETIKYIKEA--GIKAGIALNPETPVEEL-EPYL-DQVDMVLVMSVEPGFGGQ--KFI----PEVLEKIRELRKLIPE 162 (201)
T ss_dssp THHHHHHHHHHT--TSEEEEEE-TTS-GGGG-TTTG-CCSSEEEEESS-TTTSSB----H----GGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh--CCCEEEEEECCCCchHH-HHHh-hhcCEEEEEEecCCCCcc--ccc----HHHHHHHHHHHHHHHh
Confidence 355678888886 44555544333222222 1122 258998765443322111 111 1355667777787777
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
+| .++.|.+||||... .+.+....|||.+..|+.+
T Consensus 163 ~~--~~~~I~vDGGI~~~-~~~~~~~aGad~~V~Gs~i 197 (201)
T PF00834_consen 163 NG--LDFEIEVDGGINEE-NIKQLVEAGADIFVAGSAI 197 (201)
T ss_dssp HT--CGSEEEEESSESTT-THHHHHHHT--EEEESHHH
T ss_pred cC--CceEEEEECCCCHH-HHHHHHHcCCCEEEECHHH
Confidence 66 36999999999775 6778888999999999864
No 311
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=87.36 E-value=4.2 Score=38.89 Aligned_cols=91 Identities=23% Similarity=0.154 Sum_probs=54.7
Q ss_pred HHHHHHHhCCCCceEE---EEeee--c--cH-HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHH
Q psy10999 235 LIYDLKCANPNARISV---KLVSE--V--GV-GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 306 (447)
Q Consensus 235 ~I~~Lr~~~p~~pI~V---Klv~~--~--Gi-~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~ 306 (447)
.++.+|+. .++|+.. |.... + |- ....+.+.++|+|+|.++...... |...-+.+..+
T Consensus 51 ~~~~i~~~-~~iPil~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~~-------------p~~~~~~~~i~ 116 (219)
T cd04729 51 DIRAIRAR-VDLPIIGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRPR-------------PDGETLAELIK 116 (219)
T ss_pred HHHHHHHh-CCCCEEEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCCC-------------CCCcCHHHHHH
Confidence 45566654 4778853 22110 0 11 125678899999999887543221 11012233333
Q ss_pred HHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 307 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 307 ~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
.+++.+ .+++++ ++.|..++..+..+|+|.+.+
T Consensus 117 ~~~~~g---~~~iiv--~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 117 RIHEEY---NCLLMA--DISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred HHHHHh---CCeEEE--ECCCHHHHHHHHHcCCCEEEc
Confidence 343333 467766 688999999999999999854
No 312
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=87.28 E-value=5.1 Score=39.79 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=45.0
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCChHH---HHHHHHHHHHhcCCCCceEEEEcCCCCChHHHH----HHH
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWEL---GVAETHQVLALNNLRSRVVLQADGQIRTGFDVV----VAA 335 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~---~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~----kAl 335 (447)
+.+.+.|+|+|.+-|+.|-. +.+...+ .+..+.+. +.+++||++.=|=-+-.+++ .|-
T Consensus 28 ~~l~~~Gv~gl~v~GstGE~----------~~lt~~Er~~l~~~~~~~-----~~~~~~vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 28 EFQIENGTDGLVVCGTTGES----------PTLSDEEHEAVIEAVVEA-----VNGRVPVIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred HHHHHcCCCEEEECCCCcch----------hhCCHHHHHHHHHHHHHH-----hCCCCcEEeccCCccHHHHHHHHHHHH
Confidence 34567899999998775532 1222222 22333333 24578888744433444443 467
Q ss_pred HcCCCeeccChHHHH
Q psy10999 336 LLGADEIGLSTAPLI 350 (447)
Q Consensus 336 aLGAd~V~iGt~~L~ 350 (447)
.+|||+|++..|+.+
T Consensus 93 ~~G~d~v~~~~P~~~ 107 (284)
T cd00950 93 KAGADAALVVTPYYN 107 (284)
T ss_pred HcCCCEEEEcccccC
Confidence 799999999988754
No 313
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=86.98 E-value=5.2 Score=36.04 Aligned_cols=73 Identities=18% Similarity=0.144 Sum_probs=52.5
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCC-ChHHH----H
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIR-TGFDV----V 332 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIr-tg~Dv----~ 332 (447)
.....+.+.+.+||+|-+|..-|. +...++++.+.|++.|+++ +++++-|++- -..|. .
T Consensus 41 ~e~~v~aa~~~~adiVglS~l~~~---------------~~~~~~~~~~~l~~~gl~~-~~vivGG~~vi~~~d~~~~~~ 104 (134)
T TIGR01501 41 QEEFIKAAIETKADAILVSSLYGH---------------GEIDCKGLRQKCDEAGLEG-ILLYVGGNLVVGKQDFPDVEK 104 (134)
T ss_pred HHHHHHHHHHcCCCEEEEeccccc---------------CHHHHHHHHHHHHHCCCCC-CEEEecCCcCcChhhhHHHHH
Confidence 345677888999999999987542 3456888999999999875 6666666543 33443 4
Q ss_pred HHHHcCCCeeccCh
Q psy10999 333 VAALLGADEIGLST 346 (447)
Q Consensus 333 kAlaLGAd~V~iGt 346 (447)
++.++|.++|+-..
T Consensus 105 ~l~~~Gv~~vF~pg 118 (134)
T TIGR01501 105 RFKEMGFDRVFAPG 118 (134)
T ss_pred HHHHcCCCEEECcC
Confidence 68889999885543
No 314
>PRK08005 epimerase; Validated
Probab=86.85 E-value=9.2 Score=36.98 Aligned_cols=99 Identities=15% Similarity=0.078 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCC-CCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGG-TGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GG-tg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
+...|..+|+. +...+|-+-+.+.+......+. -+|.|.|=..+-| +|.. + ....+..+.+...
T Consensus 95 ~~~~l~~Ik~~--G~k~GlAlnP~Tp~~~i~~~l~--~vD~VlvMsV~PGf~GQ~---f-------~~~~~~KI~~l~~- 159 (210)
T PRK08005 95 PSEILADIRAI--GAKAGLALNPATPLLPYRYLAL--QLDALMIMTSEPDGRGQQ---F-------IAAMCEKVSQSRE- 159 (210)
T ss_pred HHHHHHHHHHc--CCcEEEEECCCCCHHHHHHHHH--hcCEEEEEEecCCCccce---e-------cHHHHHHHHHHHH-
Confidence 45678888886 4566665555444443332222 5788855332222 1111 1 1234444444322
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
.++...|.+||||. ..-+.+....|||.+.+|+++
T Consensus 160 --~~~~~~I~VDGGI~-~~~i~~l~~aGad~~V~Gsai 194 (210)
T PRK08005 160 --HFPAAECWADGGIT-LRAARLLAAAGAQHLVIGRAL 194 (210)
T ss_pred --hcccCCEEEECCCC-HHHHHHHHHCCCCEEEEChHh
Confidence 22334699999997 566778999999999999874
No 315
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=86.63 E-value=1.7 Score=38.45 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=28.8
Q ss_pred eEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcc
Q psy10999 317 VVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPV 367 (447)
Q Consensus 317 v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~ 367 (447)
|+|-.+|-| ++..|.+|+.-|||+|.+.. ||+++|.-
T Consensus 32 IrvpC~Grv-~~~~il~Af~~GADGV~V~g-------------C~~g~Ch~ 68 (124)
T PF02662_consen 32 IRVPCSGRV-DPEFILRAFEKGADGVLVAG-------------CHPGDCHY 68 (124)
T ss_pred EEccCCCcc-CHHHHHHHHHcCCCEEEEeC-------------CCCCCCCc
Confidence 445555555 78999999999999998753 78888874
No 316
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=86.57 E-value=6.2 Score=34.33 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=50.2
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
.......+.+.++|+|.+|...+ .....+++..+.|++.+.+ ++++++.|.. ...++.+..++
T Consensus 39 ~e~~~~~a~~~~~d~V~iS~~~~---------------~~~~~~~~~~~~L~~~~~~-~i~i~~GG~~-~~~~~~~~~~~ 101 (122)
T cd02071 39 PEEIVEAAIQEDVDVIGLSSLSG---------------GHMTLFPEVIELLRELGAG-DILVVGGGII-PPEDYELLKEM 101 (122)
T ss_pred HHHHHHHHHHcCCCEEEEcccch---------------hhHHHHHHHHHHHHhcCCC-CCEEEEECCC-CHHHHHHHHHC
Confidence 44566778899999999987643 2334567777788877654 6777666654 45778889999
Q ss_pred CCCeec
Q psy10999 338 GADEIG 343 (447)
Q Consensus 338 GAd~V~ 343 (447)
|.|.+.
T Consensus 102 G~d~~~ 107 (122)
T cd02071 102 GVAEIF 107 (122)
T ss_pred CCCEEE
Confidence 998764
No 317
>KOG1799|consensus
Probab=86.50 E-value=0.8 Score=47.30 Aligned_cols=70 Identities=23% Similarity=0.289 Sum_probs=57.1
Q ss_pred ceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHH
Q psy10999 316 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLA 395 (447)
Q Consensus 316 ~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~ 395 (447)
..+|.+.|||-||.|.+.-+.||++-|++-+..+.- +--+| ..+-
T Consensus 356 ~F~l~~~GGvEt~~~~~~Fil~Gs~~vQVCt~V~~~-------------------------------~~~~V----~~~C 400 (471)
T KOG1799|consen 356 EFSLSGIGGVETGYDAAEFILLGSNTVQVCTGVMMH-------------------------------GYGHV----KTLC 400 (471)
T ss_pred cCccccccCcccccchhhHhhcCCcHhhhhhHHHhc-------------------------------CcchH----HHHH
Confidence 588999999999999999999999999999987641 22333 3445
Q ss_pred HHHHHHHhhhCCCCCCccccccccccc
Q psy10999 396 EEVSRDYRAESPGFDFPLVWLGDFKQE 422 (447)
Q Consensus 396 ~Elr~~M~l~~~G~~s~~~l~~~~~~~ 422 (447)
.||+..|-+ -|.+++.+.+++-++.
T Consensus 401 a~LK~~m~~--~~~~ti~~~~G~SL~~ 425 (471)
T KOG1799|consen 401 AELKDFMKQ--HNFSTIEEFRGHSLQY 425 (471)
T ss_pred HHHHHHHHH--cCchhhhhccCcchhh
Confidence 789999999 9999999988776543
No 318
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=86.35 E-value=0.63 Score=45.60 Aligned_cols=33 Identities=30% Similarity=0.182 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 316 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 316 ~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
..+||.-||||++....+....|||.+..|+.+
T Consensus 191 ~~~LivGGGIrs~E~A~~~a~agAD~IVtG~ii 223 (240)
T COG1646 191 DTPLIVGGGIRSPEQAREMAEAGADTIVTGTII 223 (240)
T ss_pred cceEEEcCCcCCHHHHHHHHHcCCCEEEECcee
Confidence 469999999999999877777799999999964
No 319
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=86.33 E-value=13 Score=37.50 Aligned_cols=78 Identities=17% Similarity=0.148 Sum_probs=53.3
Q ss_pred HHHHHH-HCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcC--CCCChHHHHHHHHc
Q psy10999 261 VASGVA-KGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADG--QIRTGFDVVVAALL 337 (447)
Q Consensus 261 ~A~~a~-~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadG--GIrtg~Dv~kAlaL 337 (447)
.|..+. +.|+|++-++- |--+... .....-..+.|.++++.+ ++||.+-| || +..++.+++..
T Consensus 157 ea~~f~~~tg~DyLAvai--G~~hg~~----~~~~~l~~~~L~~i~~~~-------~iPlV~hG~SGI-~~e~~~~~i~~ 222 (281)
T PRK06806 157 EAKRFAEETDVDALAVAI--GNAHGMY----NGDPNLRFDRLQEINDVV-------HIPLVLHGGSGI-SPEDFKKCIQH 222 (281)
T ss_pred HHHHHHHhhCCCEEEEcc--CCCCCCC----CCCCccCHHHHHHHHHhc-------CCCEEEECCCCC-CHHHHHHHHHc
Confidence 455554 56999998842 1112111 111111456778887764 59999999 87 56789999999
Q ss_pred CCCeeccChHHHHHh
Q psy10999 338 GADEIGLSTAPLITM 352 (447)
Q Consensus 338 GAd~V~iGt~~L~al 352 (447)
|++.|.+.|.++.+.
T Consensus 223 G~~kinv~T~i~~a~ 237 (281)
T PRK06806 223 GIRKINVATATFNSV 237 (281)
T ss_pred CCcEEEEhHHHHHHH
Confidence 999999999988753
No 320
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=86.19 E-value=6.2 Score=40.98 Aligned_cols=106 Identities=16% Similarity=0.046 Sum_probs=61.9
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeec--c--HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHH
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEV--G--VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 307 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~--G--i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~ 307 (447)
+.+.+..+|+.+|+.|+++-+.... + .....+.+...++|++.|. -.-.+. ....-|......+.+..+.
T Consensus 107 ~~~~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~-l~~~qe-----~~~p~g~~~f~~~le~i~~ 180 (352)
T PRK05437 107 LADSFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIH-LNPLQE-----LVQPEGDRDFRGWLDNIAE 180 (352)
T ss_pred hHHHHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEe-Cccchh-----hcCCCCcccHHHHHHHHHH
Confidence 6677889999999999988765421 2 2334455666789999883 211111 0111122222222233333
Q ss_pred HHhcCCCCceEEEE--cCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 308 LALNNLRSRVVLQA--DGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 308 l~~~glr~~v~via--dGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
+.+. + ++||++ .|.-.+..++.++...|+|++.++.
T Consensus 181 i~~~-~--~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg 218 (352)
T PRK05437 181 IVSA-L--PVPVIVKEVGFGISKETAKRLADAGVKAIDVAG 218 (352)
T ss_pred HHHh-h--CCCEEEEeCCCCCcHHHHHHHHHcCCCEEEECC
Confidence 3221 1 589987 4544667777777889999998865
No 321
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=85.99 E-value=14 Score=35.29 Aligned_cols=90 Identities=14% Similarity=0.122 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeec---cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEV---GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAET 304 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~---Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev 304 (447)
+.+.+.+.++.+++.. +.|+.+.++... +....++.+.++|+|+|++.+. . + . +.
T Consensus 37 ~~~~~~~~~~~i~~~~-~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~---~-------------~-~----~~ 94 (236)
T cd04730 37 TPEALRAEIRKIRALT-DKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFG---P-------------P-A----EV 94 (236)
T ss_pred CHHHHHHHHHHHHHhc-CCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCC---C-------------C-H----HH
Confidence 5667777888888754 457778877543 5666788899999999998321 0 1 1 12
Q ss_pred HHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 305 HQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 305 ~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
.+.+.+. .++++. .+.+..++.++...|||.+.+.
T Consensus 95 ~~~~~~~----~i~~i~--~v~~~~~~~~~~~~gad~i~~~ 129 (236)
T cd04730 95 VERLKAA----GIKVIP--TVTSVEEARKAEAAGADALVAQ 129 (236)
T ss_pred HHHHHHc----CCEEEE--eCCCHHHHHHHHHcCCCEEEEe
Confidence 2233322 366665 3667788888888999998763
No 322
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.69 E-value=6.8 Score=36.94 Aligned_cols=81 Identities=20% Similarity=0.133 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 233 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 233 ~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
.+.++.+++..+...+..-.+ =+.+.+..+.++|||+|++ ||.+ .+ +.++.+. .
T Consensus 51 ~e~~~~~~~~~~~~~~g~gtv---l~~d~~~~A~~~gAdgv~~-p~~~--------------~~----~~~~~~~---~- 104 (187)
T PRK07455 51 AELISQLREKLPECIIGTGTI---LTLEDLEEAIAAGAQFCFT-PHVD--------------PE----LIEAAVA---Q- 104 (187)
T ss_pred HHHHHHHHHhCCCcEEeEEEE---EcHHHHHHHHHcCCCEEEC-CCCC--------------HH----HHHHHHH---c-
Confidence 355666666554322222211 1336788899999999976 4422 11 2222222 2
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
.++.+ -| ..|..++.+|..+|||.+.+
T Consensus 105 ---~~~~i-~G-~~t~~e~~~A~~~Gadyv~~ 131 (187)
T PRK07455 105 ---DIPII-PG-ALTPTEIVTAWQAGASCVKV 131 (187)
T ss_pred ---CCCEE-cC-cCCHHHHHHHHHCCCCEEEE
Confidence 24443 34 99999999999999999976
No 323
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=85.54 E-value=3.7 Score=40.90 Aligned_cols=74 Identities=16% Similarity=0.082 Sum_probs=44.4
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChH---HHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHH----HH
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE---LGVAETHQVLALNNLRSRVVLQADGQIRTGFDVV----VA 334 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~---~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~----kA 334 (447)
...+.+.|+|+|.+.|..|-. +-++.. ..+..+.+.. +.++||++.=|=-+-.+++ .|
T Consensus 28 i~~l~~~Gv~gl~~~GstGE~----------~~Lt~~Er~~l~~~~~~~~-----~~~~~vi~gv~~~st~~~i~~a~~a 92 (289)
T PF00701_consen 28 IDFLIEAGVDGLVVLGSTGEF----------YSLTDEERKELLEIVVEAA-----AGRVPVIAGVGANSTEEAIELARHA 92 (289)
T ss_dssp HHHHHHTTSSEEEESSTTTTG----------GGS-HHHHHHHHHHHHHHH-----TTSSEEEEEEESSSHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECCCCccc----------ccCCHHHHHHHHHHHHHHc-----cCceEEEecCcchhHHHHHHHHHHH
Confidence 345568899999998875432 223332 3333444443 3579988843333444432 56
Q ss_pred HHcCCCeeccChHHHH
Q psy10999 335 ALLGADEIGLSTAPLI 350 (447)
Q Consensus 335 laLGAd~V~iGt~~L~ 350 (447)
-.+|||++++..|+..
T Consensus 93 ~~~Gad~v~v~~P~~~ 108 (289)
T PF00701_consen 93 QDAGADAVLVIPPYYF 108 (289)
T ss_dssp HHTT-SEEEEEESTSS
T ss_pred hhcCceEEEEeccccc
Confidence 6799999999888654
No 324
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=85.33 E-value=8 Score=39.82 Aligned_cols=89 Identities=15% Similarity=0.035 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeecc---HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVG---VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAET 304 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~G---i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev 304 (447)
+.+.+.+.|+++|+...++|+.|.++.-.. .......+.+.++++|++++ | .|.. .
T Consensus 38 ~~e~l~~~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~---G-------------~P~~--~--- 96 (320)
T cd04743 38 RGEQVKALLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAG---G-------------RPDQ--A--- 96 (320)
T ss_pred CHHHHHHHHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcC---C-------------ChHH--H---
Confidence 467888899999997557799999864211 23344567789999998853 2 2431 2
Q ss_pred HHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 305 HQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 305 ~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
+.|++.| +.++ .-+.|.....++..+|||++.+
T Consensus 97 -~~lk~~G----i~v~--~~v~s~~~A~~a~~~GaD~vVa 129 (320)
T cd04743 97 -RALEAIG----ISTY--LHVPSPGLLKQFLENGARKFIF 129 (320)
T ss_pred -HHHHHCC----CEEE--EEeCCHHHHHHHHHcCCCEEEE
Confidence 4455544 5555 3356888899999999998853
No 325
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=85.13 E-value=5.9 Score=40.17 Aligned_cols=84 Identities=17% Similarity=0.050 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
++|..+|+.. .+||+.|.= .|....|+.+.++|+|+|+ . |. . =.|. .+.+...+.. .
T Consensus 64 ~~I~aIk~~V-~iPVigk~R--igh~~Ea~~L~~~GvDiID--~----Te------~---lrpa----d~~~~~~K~~-f 120 (293)
T PRK04180 64 KMIEEIMDAV-SIPVMAKAR--IGHFVEAQILEALGVDYID--E----SE------V---LTPA----DEEYHIDKWD-F 120 (293)
T ss_pred HHHHHHHHhC-CCCeEEeeh--hhHHHHHHHHHHcCCCEEe--c----cC------C---CCch----HHHHHHHHHH-c
Confidence 4566888775 789999842 3566788899999999994 2 21 0 1132 2333332221 1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
++|++ .|++|-.+...+..+|||.|.-
T Consensus 121 --~~~fm--ad~~~l~EAlrai~~GadmI~T 147 (293)
T PRK04180 121 --TVPFV--CGARNLGEALRRIAEGAAMIRT 147 (293)
T ss_pred --CCCEE--ccCCCHHHHHHHHHCCCCeeec
Confidence 35555 5789999999999999998843
No 326
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=85.00 E-value=6.4 Score=38.97 Aligned_cols=58 Identities=28% Similarity=0.388 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHhCCC--CceEEEEeeeccHHH-HHHHHHHCCCcEEEEe--cCCCCCC
Q psy10999 226 IYSIEDLAELIYDLKCANPN--ARISVKLVSEVGVGV-VASGVAKGKAEHIVIS--GHDGGTG 283 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~--~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~Vs--G~~GGtg 283 (447)
.-+++++.+++..+|+.+|+ .|+.+=.--..|.+. -+..+.++|+|.|+.+ |-|+++|
T Consensus 168 ~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~~aG 230 (268)
T cd07940 168 YLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAG 230 (268)
T ss_pred CCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccccccc
Confidence 34678888999999998875 677665433445554 3456789999999654 5555443
No 327
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=84.96 E-value=10 Score=43.15 Aligned_cols=66 Identities=17% Similarity=0.108 Sum_probs=46.7
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCC
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 340 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd 340 (447)
.++.+.+.++|+|+|++..+.+ ....+++.+.|++.| +++++|++.|.+. ..+......+|+|
T Consensus 625 ~v~aa~~~~a~ivvlcs~d~~~---------------~e~~~~l~~~Lk~~G-~~~v~vl~GG~~~-~~~~~~l~~aGvD 687 (714)
T PRK09426 625 AARQAVENDVHVVGVSSLAAGH---------------KTLVPALIEALKKLG-REDIMVVVGGVIP-PQDYDFLYEAGVA 687 (714)
T ss_pred HHHHHHHcCCCEEEEeccchhh---------------HHHHHHHHHHHHhcC-CCCcEEEEeCCCC-hhhHHHHHhCCCC
Confidence 4445667788888888776542 345678888999988 4468888777665 5566667788999
Q ss_pred eec
Q psy10999 341 EIG 343 (447)
Q Consensus 341 ~V~ 343 (447)
.+.
T Consensus 688 ~~i 690 (714)
T PRK09426 688 AIF 690 (714)
T ss_pred EEE
Confidence 653
No 328
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=84.92 E-value=9.2 Score=37.31 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=58.8
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEe--cCC-CCCCCccccccccCCCChHHHHHHHHHHH
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVIS--GHD-GGTGASSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~Vs--G~~-GGtg~a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
....|..+|+. ++..+|=+-+++.+...---+ --+|.|.+= +.| ||+-+. ....+-+.++.+.+
T Consensus 98 ~~r~i~~Ik~~--G~kaGv~lnP~Tp~~~i~~~l--~~vD~VllMsVnPGfgGQ~Fi---------~~~l~Ki~~lr~~~ 164 (220)
T COG0036 98 IHRTIQLIKEL--GVKAGLVLNPATPLEALEPVL--DDVDLVLLMSVNPGFGGQKFI---------PEVLEKIRELRAMI 164 (220)
T ss_pred HHHHHHHHHHc--CCeEEEEECCCCCHHHHHHHH--hhCCEEEEEeECCCCcccccC---------HHHHHHHHHHHHHh
Confidence 44567777775 555555554533333222222 346888553 222 333221 12445566666665
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChH
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 347 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~ 347 (447)
.+ +..+.|.+||||. ..-+-.+.+.|||.+.+|++
T Consensus 165 ~~---~~~~~IeVDGGI~-~~t~~~~~~AGad~~VaGSa 199 (220)
T COG0036 165 DE---RLDILIEVDGGIN-LETIKQLAAAGADVFVAGSA 199 (220)
T ss_pred cc---cCCeEEEEeCCcC-HHHHHHHHHcCCCEEEEEEE
Confidence 54 2268899999995 45566777799999999994
No 329
>KOG2334|consensus
Probab=84.34 E-value=17 Score=38.79 Aligned_cols=113 Identities=15% Similarity=0.095 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEee---eccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHH
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVS---EVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAE 303 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~---~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~e 303 (447)
.+.+.+...++.|...+ .+||..|+=. ..|.....++..+.|+-.|.|=+. |-- ...--.++.+-+.+
T Consensus 132 t~~dkl~~IL~sLvk~~-~vpvtckIR~L~s~edtL~lv~ri~~tgi~ai~vh~r---t~d-----~r~~~~~~~~~i~~ 202 (477)
T KOG2334|consen 132 TDPDKLVAILYSLVKGN-KVPVTCKIRLLDSKEDTLKLVKRICATGIAAITVHCR---TRD-----ERNQEPATKDYIRE 202 (477)
T ss_pred cCHHHHHHHHHHHHhcC-cccceeEEEecCCcccHHHHHHHHHhcCCceEEEEee---ccc-----cCCCCCCCHHHHHH
Confidence 45567778888988876 7899999654 123334456778899999988543 210 11123467788999
Q ss_pred HHHHHHhcCCCCceEEEEcCCCCC---hHHHHHH-HHcCCCeeccChHHHHHhcc
Q psy10999 304 THQVLALNNLRSRVVLQADGQIRT---GFDVVVA-ALLGADEIGLSTAPLITMGC 354 (447)
Q Consensus 304 v~~~l~~~glr~~v~viadGGIrt---g~Dv~kA-laLGAd~V~iGt~~L~algc 354 (447)
+.+++. .||||+-||.++ ..|+-+- ...|++.|+++|..+....|
T Consensus 203 i~~~~~------~V~vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~Si 251 (477)
T KOG2334|consen 203 IAQACQ------MVPVIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSI 251 (477)
T ss_pred HHHHhc------cceEeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCce
Confidence 998863 399999999999 8888654 45799999999977665433
No 330
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=84.25 E-value=14 Score=36.35 Aligned_cols=118 Identities=16% Similarity=0.148 Sum_probs=67.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHH------HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCCh
Q psy10999 224 HDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG------VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW 297 (447)
Q Consensus 224 ~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~------~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~ 297 (447)
....+.+++.+.++.+.... ..|+++-+-. |.+ ..++.+.++|+++|.|.+.......+.. ....-+|.
T Consensus 49 ~~~~~~~e~~~~~~~I~~~~-~~Pv~~D~~~--G~g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~--~~~~~~~~ 123 (243)
T cd00377 49 GGLLTLDEVLAAVRRIARAV-DLPVIADADT--GYGNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHH--GGKVLVPI 123 (243)
T ss_pred CCcCCHHHHHHHHHHHHhhc-cCCEEEEcCC--CCCCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCC--CCCeecCH
Confidence 34556677777788877764 5688776433 332 2245677899999999554321111100 00112466
Q ss_pred HHHHHHHHHHHHhc-CCCCceEEEEc--------CCCCChHHHHH-HHHcCCCeeccChH
Q psy10999 298 ELGVAETHQVLALN-NLRSRVVLQAD--------GQIRTGFDVVV-AALLGADEIGLSTA 347 (447)
Q Consensus 298 ~~~L~ev~~~l~~~-glr~~v~viad--------GGIrtg~Dv~k-AlaLGAd~V~iGt~ 347 (447)
++.+..+..+.... +. .+++|++= .|+.....-++ +...|||.+++=.+
T Consensus 124 ee~~~ki~aa~~a~~~~-~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~~~ 182 (243)
T cd00377 124 EEFVAKIKAARDARDDL-PDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVEGL 182 (243)
T ss_pred HHHHHHHHHHHHHHhcc-CCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 66666655544332 11 36888875 35544444444 45699999988654
No 331
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=83.65 E-value=5.3 Score=42.76 Aligned_cols=83 Identities=12% Similarity=0.011 Sum_probs=53.2
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCcccccccc-CCCC-hHHHHHHHHHHHHh--cCCCCceEEEEcCCCCChHHHHHHH
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKN-AGLP-WELGVAETHQVLAL--NNLRSRVVLQADGQIRTGFDVVVAA 335 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~-~G~p-~~~~L~ev~~~l~~--~glr~~v~viadGGIrtg~Dv~kAl 335 (447)
..+..+.+.|+|+|.++----.+ -+. ...| ....|.++.+.+.. ..-...+||++-||| +..++...+
T Consensus 311 eEl~~A~~~gaDYI~lGPIFpT~-------TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iPVVAIGGI-~~~Ni~~vl 382 (437)
T PRK12290 311 YELLRIVQIQPSYIALGHIFPTT-------TKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFPTVAIGGI-DQSNAEQVW 382 (437)
T ss_pred HHHHHHhhcCCCEEEECCccCCC-------CCCCCCCCCCHHHHHHHHHHhhhccccccCCCCEEEECCc-CHHHHHHHH
Confidence 44667788999999884321111 111 1112 23445554444311 000125999999999 899999999
Q ss_pred HcCCCeeccChHHHH
Q psy10999 336 LLGADEIGLSTAPLI 350 (447)
Q Consensus 336 aLGAd~V~iGt~~L~ 350 (447)
..||++|.+=++++-
T Consensus 383 ~aGa~GVAVVSAI~~ 397 (437)
T PRK12290 383 QCGVSSLAVVRAITL 397 (437)
T ss_pred HcCCCEEEEehHhhc
Confidence 999999999988763
No 332
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=83.56 E-value=18 Score=37.05 Aligned_cols=109 Identities=15% Similarity=0.059 Sum_probs=62.6
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeee--ccHHHHHHHHHHCCCcEEEEecCC-CCCCCccccccccCCCChHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSE--VGVGVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKNAGLPWELGVAET 304 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~--~Gi~~~A~~a~~aGaD~I~VsG~~-GGtg~a~~~~~~~~G~p~~~~L~ev 304 (447)
+++.|.+.+..+++.. +.||++-+... ....+.++.+.++|+|+|.+--+. ..+ + +..|......+.++
T Consensus 83 g~~~~~~~i~~~~~~~-~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~---~----~~~g~~~~~~~~ei 154 (325)
T cd04739 83 GPEEYLELIRRAKRAV-SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTD---P----DISGAEVEQRYLDI 154 (325)
T ss_pred CHHHHHHHHHHHHhcc-CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCC---C----CcccchHHHHHHHH
Confidence 3566777777766543 57998886421 112345666788999999874321 000 0 11222223345555
Q ss_pred HHHHHhcCCCCceEEEE--cCCCCChHHHHHH-HHcCCCeeccChH
Q psy10999 305 HQVLALNNLRSRVVLQA--DGQIRTGFDVVVA-ALLGADEIGLSTA 347 (447)
Q Consensus 305 ~~~l~~~glr~~v~via--dGGIrtg~Dv~kA-laLGAd~V~iGt~ 347 (447)
.+.+++. + ++||++ ...+..-.+++++ ...|||++.+...
T Consensus 155 v~~v~~~-~--~iPv~vKl~p~~~~~~~~a~~l~~~Gadgi~~~nt 197 (325)
T cd04739 155 LRAVKSA-V--TIPVAVKLSPFFSALAHMAKQLDAAGADGLVLFNR 197 (325)
T ss_pred HHHHHhc-c--CCCEEEEcCCCccCHHHHHHHHHHcCCCeEEEEcC
Confidence 5555432 1 478887 4445556677765 5689999877544
No 333
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=83.32 E-value=9.3 Score=38.18 Aligned_cols=91 Identities=18% Similarity=0.144 Sum_probs=54.9
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCC---hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHH---H-HHH
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP---WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDV---V-VAA 335 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p---~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv---~-kAl 335 (447)
+.+.+.|+|+|.+-|+.|-.. -+. ....+..+.+.. .+++||++.=|=.+-.|. + .|-
T Consensus 29 ~~l~~~Gv~gi~~~Gs~GE~~----------~ls~~Er~~~~~~~~~~~-----~~~~~vi~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 29 DYLIANGTDGLVVVGTTGESP----------TLTHEEHEELIRAVVEAV-----NGRVPVIAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred HHHHHcCCCEEEECCcCCccc----------cCCHHHHHHHHHHHHHHh-----CCCCcEEeecCCchHHHHHHHHHHHH
Confidence 445678999999977644321 122 223333444442 457888874332233333 2 456
Q ss_pred HcCCCeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHH
Q psy10999 336 LLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEV 398 (447)
Q Consensus 336 aLGAd~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~El 398 (447)
.+|||+|++-.|+.+.. .++++.+|++.+.+..
T Consensus 94 ~~G~d~v~~~pP~~~~~------------------------------~~~~i~~~~~~ia~~~ 126 (292)
T PRK03170 94 KAGADGALVVTPYYNKP------------------------------TQEGLYQHFKAIAEAT 126 (292)
T ss_pred HcCCCEEEECCCcCCCC------------------------------CHHHHHHHHHHHHhcC
Confidence 68999999988875432 3677788887777654
No 334
>KOG3111|consensus
Probab=83.03 E-value=15 Score=35.36 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEe----cCCCCCCCccccccccCCCChHHHHHHHHH
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVIS----GHDGGTGASSWTGIKNAGLPWELGVAETHQ 306 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~Vs----G~~GGtg~a~~~~~~~~G~p~~~~L~ev~~ 306 (447)
++..+++.+|+. +..+++-+=+ |...+...-.-.-+|.+.|= |. ||+. -.++.++.+..
T Consensus 100 ~~~~lv~~ir~~--Gmk~G~alkP--gT~Ve~~~~~~~~~D~vLvMtVePGF-GGQk------------Fme~mm~KV~~ 162 (224)
T KOG3111|consen 100 KPAELVEKIREK--GMKVGLALKP--GTPVEDLEPLAEHVDMVLVMTVEPGF-GGQK------------FMEDMMPKVEW 162 (224)
T ss_pred CHHHHHHHHHHc--CCeeeEEeCC--CCcHHHHHHhhccccEEEEEEecCCC-chhh------------hHHHHHHHHHH
Confidence 366788899886 4444444333 33322222222356877543 44 3332 13466777765
Q ss_pred HHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHH
Q psy10999 307 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLIT 351 (447)
Q Consensus 307 ~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~a 351 (447)
...++ ....+-+|||+ ++.-|-|+...||+.+..||+..-|
T Consensus 163 lR~ky---p~l~ievDGGv-~~~ti~~~a~AGAN~iVaGsavf~a 203 (224)
T KOG3111|consen 163 LREKY---PNLDIEVDGGV-GPSTIDKAAEAGANMIVAGSAVFGA 203 (224)
T ss_pred HHHhC---CCceEEecCCc-CcchHHHHHHcCCCEEEecceeecC
Confidence 43333 25778899999 4677889999999999999987643
No 335
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=82.62 E-value=14 Score=33.63 Aligned_cols=63 Identities=19% Similarity=0.012 Sum_probs=39.5
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCC-ceEEEEcCCCCC--------hHHHH
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRS-RVVLQADGQIRT--------GFDVV 332 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~-~v~viadGGIrt--------g~Dv~ 332 (447)
++.+.+.|+|+|.+.| ..+..+.+.. .+ ++||++-=|-.+ -..+-
T Consensus 19 ~~~~~~~gv~gi~~~g---------------------~~i~~~~~~~-----~~~~~~v~~~v~~~~~~~~~~~~~~~a~ 72 (201)
T cd00945 19 CDEAIEYGFAAVCVNP---------------------GYVRLAADAL-----AGSDVPVIVVVGFPTGLTTTEVKVAEVE 72 (201)
T ss_pred HHHHHHhCCcEEEECH---------------------HHHHHHHHHh-----CCCCCeEEEEecCCCCCCcHHHHHHHHH
Confidence 4456678889988876 2233444432 34 688776333322 23456
Q ss_pred HHHHcCCCeeccChHHHH
Q psy10999 333 VAALLGADEIGLSTAPLI 350 (447)
Q Consensus 333 kAlaLGAd~V~iGt~~L~ 350 (447)
.|..+|||++.+-.++-+
T Consensus 73 ~a~~~Gad~i~v~~~~~~ 90 (201)
T cd00945 73 EAIDLGADEIDVVINIGS 90 (201)
T ss_pred HHHHcCCCEEEEeccHHH
Confidence 788899999998776643
No 336
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=82.59 E-value=3.7 Score=39.80 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.+.|+.+++..|++-|+.-.|. ....+..+.++|+++|+==|. . +++.+.+..+
T Consensus 51 a~e~I~~l~~~~p~~lIGAGTVL---~~~q~~~a~~aGa~fiVsP~~-----------------~-----~ev~~~a~~~ 105 (211)
T COG0800 51 ALEAIRALAKEFPEALIGAGTVL---NPEQARQAIAAGAQFIVSPGL-----------------N-----PEVAKAANRY 105 (211)
T ss_pred HHHHHHHHHHhCcccEEcccccc---CHHHHHHHHHcCCCEEECCCC-----------------C-----HHHHHHHHhC
Confidence 56889999999886555332111 235677889999999964221 1 2444444433
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCee------cc-ChHHHHHhcccchhcccCCCCccccccc
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEI------GL-STAPLITMGCTMMRKCHLNTCPVGIATQ 372 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V------~i-Gt~~L~algc~~~~~c~~~~cP~giat~ 372 (447)
.+|+ .=|+.|+.++..|+.+|++.+ .+ |-.++.++.-.. -+..=||||=.+.
T Consensus 106 ----~ip~--~PG~~TptEi~~Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~---~~v~~~pTGGVs~ 164 (211)
T COG0800 106 ----GIPY--IPGVATPTEIMAALELGASALKFFPAEVVGGPAMLKALAGPF---PQVRFCPTGGVSL 164 (211)
T ss_pred ----CCcc--cCCCCCHHHHHHHHHcChhheeecCccccCcHHHHHHHcCCC---CCCeEeecCCCCH
Confidence 3554 469999999999999999855 44 445555543221 1234466654433
No 337
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=82.53 E-value=15 Score=38.92 Aligned_cols=91 Identities=18% Similarity=0.179 Sum_probs=62.4
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
+.|++||+..|+.+|.+=+. ...++. .+..+.++|+|.++|.+. ++ ...+.++.+..+++|
T Consensus 215 ~iVk~Lr~~~~~~~I~~DLK-~~Di~~~vv~~~a~aGAD~vTVH~e-a~----------------~~ti~~ai~~akk~G 276 (391)
T PRK13307 215 EVISKIREVRPDAFIVADLK-TLDTGNLEARMAADATADAVVISGL-AP----------------ISTIEKAIHEAQKTG 276 (391)
T ss_pred HHHHHHHHhCCCCeEEEEec-ccChhhHHHHHHHhcCCCEEEEecc-CC----------------HHHHHHHHHHHHHcC
Confidence 56888988766656554322 224443 377789999999999764 22 123555666666666
Q ss_pred CCCceEEEE-cCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 313 LRSRVVLQA-DGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 313 lr~~v~via-dGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
+.+.+ .=...|+.+.++.+.++.|.|.+.+
T Consensus 277 ----ikvgVD~lnp~tp~e~i~~l~~~vD~Vllht 307 (391)
T PRK13307 277 ----IYSILDMLNVEDPVKLLESLKVKPDVVELHR 307 (391)
T ss_pred ----CEEEEEEcCCCCHHHHHHHhhCCCCEEEEcc
Confidence 34445 5566789999999999999998876
No 338
>COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism]
Probab=82.51 E-value=5 Score=38.81 Aligned_cols=92 Identities=22% Similarity=0.279 Sum_probs=59.4
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHH-HHHHHHHHCCCcEEEEecC----CCCCCCccccccccCCCChHHHHHHHHHHH
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVG-VVASGVAKGKAEHIVISGH----DGGTGASSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~-~~A~~a~~aGaD~I~VsG~----~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
+.++.||+.. +.|| +|.++...-. .........-+|.+.++.+ .||||-+ .||. .++..
T Consensus 88 ~~~~~l~~~~-~~~v-~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~-----fDW~-----~l~~~---- 151 (208)
T COG0135 88 EYIDQLKEEL-GVPV-IKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQT-----FDWN-----LLPKL---- 151 (208)
T ss_pred HHHHHHHhhc-CCce-EEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcE-----ECHH-----Hhccc----
Confidence 5688888875 4454 5655422221 2334455678999999986 4667643 2222 12211
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHHHcCC-CeeccChH
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAALLGA-DEIGLSTA 347 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAlaLGA-d~V~iGt~ 347 (447)
+...|++.+||| |+.+|..|+.++. .++=+.+.
T Consensus 152 -----~~~~~~~LAGGL-~p~NV~~ai~~~~p~gvDvSSG 185 (208)
T COG0135 152 -----RLSKPVMLAGGL-NPDNVAEAIALGPPYGVDVSSG 185 (208)
T ss_pred -----cccCCEEEECCC-CHHHHHHHHHhcCCceEEeccc
Confidence 125779999999 8999999999998 77766653
No 339
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=82.42 E-value=5.4 Score=38.64 Aligned_cols=82 Identities=21% Similarity=0.172 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+++.+..|.+.+ ++|++|. ++...|.+.++|+|++.. +| +| +.++.+.+
T Consensus 53 ~a~~~~~lc~~~-~v~liIN--------d~~dlA~~~~AdGVHlGq-------------~D--~~----~~~ar~~~--- 101 (211)
T COG0352 53 LAEKLRALCQKY-GVPLIIN--------DRVDLALAVGADGVHLGQ-------------DD--MP----LAEARELL--- 101 (211)
T ss_pred HHHHHHHHHHHh-CCeEEec--------CcHHHHHhCCCCEEEcCC-------------cc--cc----hHHHHHhc---
Confidence 445566666664 7888887 344555689999999932 11 12 33444432
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
. -.++.--...+-.++.+|..+|||.|++|.-|
T Consensus 102 --~--~~~iIG~S~h~~eea~~A~~~g~DYv~~Gpif 134 (211)
T COG0352 102 --G--PGLIIGLSTHDLEEALEAEELGADYVGLGPIF 134 (211)
T ss_pred --C--CCCEEEeecCCHHHHHHHHhcCCCEEEECCcC
Confidence 1 22455556669999999999999999999754
No 340
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=82.41 E-value=16 Score=37.16 Aligned_cols=89 Identities=16% Similarity=0.052 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeec-cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEV-GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 306 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~-Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~ 306 (447)
+++.+.+.|.++|+.. +.|+.|.++... ......+.+.+.|+++|.+++ |.|. +..+
T Consensus 46 ~~~~l~~~i~~~~~~t-~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~----------------g~p~-----~~i~ 103 (307)
T TIGR03151 46 PPDVVRKEIRKVKELT-DKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGA----------------GNPG-----KYIP 103 (307)
T ss_pred CHHHHHHHHHHHHHhc-CCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcC----------------CCcH-----HHHH
Confidence 5678888999999875 569999876422 122333457789999998732 1242 2334
Q ss_pred HHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 307 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 307 ~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
.+++.| +.|++ -+.+..+..++..+|||.+.+
T Consensus 104 ~lk~~g----~~v~~--~v~s~~~a~~a~~~GaD~Ivv 135 (307)
T TIGR03151 104 RLKENG----VKVIP--VVASVALAKRMEKAGADAVIA 135 (307)
T ss_pred HHHHcC----CEEEE--EcCCHHHHHHHHHcCCCEEEE
Confidence 444433 56665 457888888999999999876
No 341
>PTZ00411 transaldolase-like protein; Provisional
Probab=82.18 E-value=19 Score=37.35 Aligned_cols=108 Identities=14% Similarity=0.087 Sum_probs=69.3
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCC-C--cc--ccccccCCCChHHHHHHHHHHH
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTG-A--SS--WTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg-~--a~--~~~~~~~G~p~~~~L~ev~~~l 308 (447)
+.++.|... |+++-+=++- ....|..++++|+++|-. +=|+-- + .+ .......+.|....+.++.+..
T Consensus 151 ~Aa~~L~~e--GI~~N~TlvF---S~~QA~aaaeAGa~~ISP--fVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 223 (333)
T PTZ00411 151 QAAKALEKE--GIHCNLTLLF---SFAQAVACAQAGVTLISP--FVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYY 223 (333)
T ss_pred HHHHHHHHC--CCceeEeEec---CHHHHHHHHHcCCCEEEe--ecchHHHhcccccccccccccCCchHHHHHHHHHHH
Confidence 455556553 5555554432 234567788999999832 212210 0 00 0000112567788899999999
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhc
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMG 353 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~alg 353 (447)
+.+|.. +.|....+|+..+|.. ..|+|.+-+.-.+|-.+.
T Consensus 224 k~~g~~---T~Im~ASfRn~~qi~~--laG~D~lTi~p~ll~~L~ 263 (333)
T PTZ00411 224 KKHGYK---TIVMGASFRNTGEILE--LAGCDKLTISPKLLEELA 263 (333)
T ss_pred HHcCCC---eEEEecccCCHHHHHH--HHCCCEEeCCHHHHHHHH
Confidence 888754 4677888999999987 479999999888877664
No 342
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=82.11 E-value=7 Score=37.89 Aligned_cols=58 Identities=22% Similarity=0.318 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEe--cCCCCCCC
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVIS--GHDGGTGA 284 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~Vs--G~~GGtg~ 284 (447)
-+++++.+++.++|+.+|++++.+=.--..|.+. -+..|.++|||.|..+ |-|+++|.
T Consensus 172 ~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn 232 (265)
T cd03174 172 ATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGN 232 (265)
T ss_pred cCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccC
Confidence 4678899999999999877677665333446654 3556789999999654 66655543
No 343
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=81.64 E-value=4.6 Score=38.55 Aligned_cols=88 Identities=25% Similarity=0.189 Sum_probs=52.3
Q ss_pred HHHHHHHHhCCCCceE--EEEee-ecc-----HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHH
Q psy10999 234 ELIYDLKCANPNARIS--VKLVS-EVG-----VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETH 305 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~--VKlv~-~~G-----i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~ 305 (447)
++|..+|+.. ++||+ +|-.- ..+ ...++..+.++|+|+|-+|+. .+. .. .+..+.+.+++
T Consensus 22 ~dI~aik~~v-~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT-~R~---------Rp-~~l~~li~~i~ 89 (192)
T PF04131_consen 22 EDIRAIKKAV-DLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDAT-DRP---------RP-ETLEELIREIK 89 (192)
T ss_dssp HHHHHHHTTB--S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-S-SSS----------S-S-HHHHHHHHH
T ss_pred HHHHHHHHhc-CCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecC-CCC---------CC-cCHHHHHHHHH
Confidence 4577888774 67763 34211 111 235778899999999999975 221 11 34444455554
Q ss_pred HHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeec
Q psy10999 306 QVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIG 343 (447)
Q Consensus 306 ~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~ 343 (447)
+ .+ ..+++| +.|-.|...|..||+|.|+
T Consensus 90 ~----~~----~l~MAD--ist~ee~~~A~~~G~D~I~ 117 (192)
T PF04131_consen 90 E----KY----QLVMAD--ISTLEEAINAAELGFDIIG 117 (192)
T ss_dssp H----CT----SEEEEE---SSHHHHHHHHHTT-SEEE
T ss_pred H----hC----cEEeee--cCCHHHHHHHHHcCCCEEE
Confidence 3 22 667777 6899999999999999983
No 344
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=81.57 E-value=3.5 Score=47.08 Aligned_cols=69 Identities=22% Similarity=0.130 Sum_probs=47.1
Q ss_pred CCcEEEEecCCCCCCCccccccccCCCC--hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 269 KAEHIVISGHDGGTGASSWTGIKNAGLP--WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 269 GaD~I~VsG~~GGtg~a~~~~~~~~G~p--~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
|||+|.++-. --|.. +....| -...+.++.+.+.. ..+||++-||| +..++..++..||++|.+-+
T Consensus 128 gaDYi~~Gpv-f~T~t------K~~~~~~lG~~~l~~~~~~~~~----~~iPv~AiGGI-~~~~~~~~~~~Ga~giAvis 195 (755)
T PRK09517 128 LPDVIGIGPV-ASTAT------KPDAPPALGVDGIAEIAAVAQD----HGIASVAIGGV-GLRNAAELAATGIDGLCVVS 195 (755)
T ss_pred CCCEEEECCc-cccCC------CCCCCCCCCHHHHHHHHHhcCc----CCCCEEEECCC-CHHHHHHHHHcCCCEEEEeh
Confidence 5999998533 22211 111111 33556666655311 13999999999 89999999999999999999
Q ss_pred HHH
Q psy10999 347 APL 349 (447)
Q Consensus 347 ~~L 349 (447)
.++
T Consensus 196 ai~ 198 (755)
T PRK09517 196 AIM 198 (755)
T ss_pred Hhh
Confidence 876
No 345
>cd00439 Transaldolase Transaldolase. Enzymes found in the non-oxidative branch of the pentose phosphate pathway, that catalyze the reversible transfer of a dihydroxyacetone group from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. They are members of the class I aldolases, who are characterized by using a Schiff-base mechanism for stabilization of the reaction intermediates.
Probab=81.57 E-value=17 Score=36.07 Aligned_cols=110 Identities=11% Similarity=0.003 Sum_probs=66.6
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeee-ccHH--------------------HHHHHHHHCCCcEEEEecCCCCCCCcc
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSE-VGVG--------------------VVASGVAKGKAEHIVISGHDGGTGASS 286 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~-~Gi~--------------------~~A~~a~~aGaD~I~VsG~~GGtg~a~ 286 (447)
+.+.+.+.-++|.+..+.-.+.||+.+. .|+. ..+..++++|+++|-. +=|+
T Consensus 98 d~~~mi~~A~~l~~~~~~~nv~IKIPaT~~Gl~A~~~L~~~GI~vn~T~vfs~~Qa~~aa~Aga~~isp--fvgR----- 170 (252)
T cd00439 98 DTQGMVEAAKYLSKVVNRRNIYIKIPATAEGIPAIKDLIAAGISVNVTLIFSIAQYEAVADAGTSVASP--FVSR----- 170 (252)
T ss_pred CHHHHHHHHHHHHHhcCcccEEEEeCCCHHHHHHHHHHHHCCCceeeeeecCHHHHHHHHHcCCCEEEE--eccH-----
Confidence 3444444445555554322477887652 1221 2344577899998843 1122
Q ss_pred ccccccCCC-------------ChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 287 WTGIKNAGL-------------PWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 287 ~~~~~~~G~-------------p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
+++++. +....+.++++.++.++.+ ..| ....+|+..+|..++ |+|.|-+....+..+
T Consensus 171 ---id~~~~~~~~~~~~d~~~~~gi~~~~~~~~~~~~~~~~--tki-L~AS~r~~~~v~~l~--G~d~vT~~p~v~~~l 241 (252)
T cd00439 171 ---IDTLMDKMLEQIGLDLRGKAGVAQVTLAYKLYKQKFKK--QRV-LWASFSDTLYVAPLI--GCDTVTTMPDQALEA 241 (252)
T ss_pred ---HHHHhhhhccccccccccCcHHHHHHHHHHHHHHhCCC--CeE-EEEeeCCHHHHHHhh--CCCeeecCHHHHHHH
Confidence 233333 6667778888888777643 444 444688999997655 999998887766543
No 346
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=81.12 E-value=14 Score=36.68 Aligned_cols=87 Identities=15% Similarity=0.061 Sum_probs=57.6
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.|..+|+.. +.||+.|=... .......+.++|||+|.+.+.. ++ ..-|.+..+.....|
T Consensus 101 ~~l~~v~~~v-~iPvl~kdfi~--~~~qi~~a~~~GAD~VlLi~~~---------------l~-~~~l~~li~~a~~lG- 160 (260)
T PRK00278 101 EYLRAARAAV-SLPVLRKDFII--DPYQIYEARAAGADAILLIVAA---------------LD-DEQLKELLDYAHSLG- 160 (260)
T ss_pred HHHHHHHHhc-CCCEEeeeecC--CHHHHHHHHHcCCCEEEEEecc---------------CC-HHHHHHHHHHHHHcC-
Confidence 4566777763 68999993321 1234567889999999997642 01 123444445444444
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
..++++ +.+-.++.+|..+|||.+++.
T Consensus 161 ---l~~lve--vh~~~E~~~A~~~gadiIgin 187 (260)
T PRK00278 161 ---LDVLVE--VHDEEELERALKLGAPLIGIN 187 (260)
T ss_pred ---CeEEEE--eCCHHHHHHHHHcCCCEEEEC
Confidence 556665 678999999999999988765
No 347
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=80.93 E-value=13 Score=37.57 Aligned_cols=83 Identities=17% Similarity=0.047 Sum_probs=55.4
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.|.++++.. .+||+-|. -.|....|+.+.++|+|+|+ . |- .-.|. .+.+...+.. .
T Consensus 57 ~~I~~I~~~V-~iPVig~~--kigh~~Ea~~L~~~GvDiID--e----Te---------~lrPa----de~~~~~K~~-f 113 (287)
T TIGR00343 57 KMIKEIMDAV-SIPVMAKV--RIGHFVEAQILEALGVDYID--E----SE---------VLTPA----DWTFHIDKKK-F 113 (287)
T ss_pred HHHHHHHHhC-CCCEEEEe--eccHHHHHHHHHHcCCCEEE--c----cC---------CCCcH----HHHHHHHHHH-c
Confidence 4577888765 78998774 23667788999999999993 2 21 01142 2333332221 1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeec
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIG 343 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~ 343 (447)
++|++ .|++|-.+...+..+|||.+.
T Consensus 114 --~vpfm--ad~~~l~EAlrai~~GadmI~ 139 (287)
T TIGR00343 114 --KVPFV--CGARDLGEALRRINEGAAMIR 139 (287)
T ss_pred --CCCEE--ccCCCHHHHHHHHHCCCCEEe
Confidence 35544 579999999999999999873
No 348
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=80.62 E-value=16 Score=37.93 Aligned_cols=30 Identities=33% Similarity=0.359 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 316 RVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 316 ~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
++||++- |+.+..|+.++...|+|++.+..
T Consensus 213 ~~PvivK-gv~~~~dA~~a~~~G~d~I~vsn 242 (344)
T cd02922 213 KLPIVLK-GVQTVEDAVLAAEYGVDGIVLSN 242 (344)
T ss_pred CCcEEEE-cCCCHHHHHHHHHcCCCEEEEEC
Confidence 5898887 77899999999999999998764
No 349
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=80.34 E-value=6 Score=38.12 Aligned_cols=88 Identities=13% Similarity=0.008 Sum_probs=59.2
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccC-CCChHHHHHHHHHHHHhcC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNA-GLPWELGVAETHQVLALNN 312 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~-G~p~~~~L~ev~~~l~~~g 312 (447)
+.++..++. ++|. ++.+-..+++..+.++|+|.|.+==.+ . . |...+.+|... +
T Consensus 92 ~v~~~~~~~--~i~~----iPG~~TptEi~~A~~~Ga~~vKlFPA~--~----------~GG~~yikal~~p---l---- 146 (204)
T TIGR01182 92 ELAKHAQDH--GIPI----IPGVATPSEIMLALELGITALKLFPAE--V----------SGGVKMLKALAGP---F---- 146 (204)
T ss_pred HHHHHHHHc--CCcE----ECCCCCHHHHHHHHHCCCCEEEECCch--h----------cCCHHHHHHHhcc---C----
Confidence 445666554 4454 222224678889999999999884221 0 1 13333333322 1
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
.+++++.+|||.- .++..-+..||.+|++|+.+.
T Consensus 147 --p~i~~~ptGGV~~-~N~~~~l~aGa~~vg~Gs~L~ 180 (204)
T TIGR01182 147 --PQVRFCPTGGINL-ANVRDYLAAPNVACGGGSWLV 180 (204)
T ss_pred --CCCcEEecCCCCH-HHHHHHHhCCCEEEEEChhhc
Confidence 3699999999965 899999999999999999753
No 350
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=80.33 E-value=37 Score=34.42 Aligned_cols=78 Identities=14% Similarity=0.138 Sum_probs=53.2
Q ss_pred HHHHHHHHCCCcEEEEe--cCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCC--CCChHHHHHHH
Q psy10999 260 VVASGVAKGKAEHIVIS--GHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQ--IRTGFDVVVAA 335 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~Vs--G~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGG--Irtg~Dv~kAl 335 (447)
.+|..+.+.|+|++-++ ..-|-. .++ .. .+ ..+.|.++++.+ .++||.+-|| | +..++.+++
T Consensus 157 eea~~f~~tgvD~LAv~iG~vHG~y-~t~---~k--~l-~~e~L~~i~~~~------~~iPlVlhGGSGi-~~e~~~~~i 222 (293)
T PRK07315 157 EDAKAMVETGIDFLAAGIGNIHGPY-PEN---WE--GL-DLDHLEKLTEAV------PGFPIVLHGGSGI-PDDQIQEAI 222 (293)
T ss_pred HHHHHHHHcCCCEEeeccccccccC-CCC---CC--cC-CHHHHHHHHHhc------cCCCEEEECCCCC-CHHHHHHHH
Confidence 35666668999999887 221211 000 01 11 235677777764 1489999999 7 457799999
Q ss_pred HcCCCeeccChHHHHH
Q psy10999 336 LLGADEIGLSTAPLIT 351 (447)
Q Consensus 336 aLGAd~V~iGt~~L~a 351 (447)
..|++.|.++|.+..+
T Consensus 223 ~~Gi~KiNv~T~i~~~ 238 (293)
T PRK07315 223 KLGVAKVNVNTECQIA 238 (293)
T ss_pred HcCCCEEEEccHHHHH
Confidence 9999999999998764
No 351
>KOG4201|consensus
Probab=80.25 E-value=18 Score=35.40 Aligned_cols=81 Identities=15% Similarity=0.040 Sum_probs=59.5
Q ss_pred eccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHH
Q psy10999 255 EVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVA 334 (447)
Q Consensus 255 ~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kA 334 (447)
|+.......++.+.|+..|=|-|..=.| + ..-+.+..-|.| |++++|-|++-.||.|+.|+++-
T Consensus 192 EVn~~eEm~raleiGakvvGvNNRnL~s------F--eVDlstTskL~E--------~i~kDvilva~SGi~tpdDia~~ 255 (289)
T KOG4201|consen 192 EVNDEEEMQRALEIGAKVVGVNNRNLHS------F--EVDLSTTSKLLE--------GIPKDVILVALSGIFTPDDIAKY 255 (289)
T ss_pred eeccHHHHHHHHHhCcEEEeecCCccce------e--eechhhHHHHHh--------hCccceEEEeccCCCCHHHHHHH
Confidence 4445667778889999999776653221 1 223444443333 35678999999999999999999
Q ss_pred HHcCCCeeccChHHHHH
Q psy10999 335 ALLGADEIGLSTAPLIT 351 (447)
Q Consensus 335 laLGAd~V~iGt~~L~a 351 (447)
-..|..+|.+|-.+|..
T Consensus 256 q~~GV~avLVGEslmk~ 272 (289)
T KOG4201|consen 256 QKAGVKAVLVGESLMKQ 272 (289)
T ss_pred HHcCceEEEecHHHHhc
Confidence 99999999999988753
No 352
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=80.15 E-value=15 Score=32.94 Aligned_cols=73 Identities=15% Similarity=0.103 Sum_probs=53.4
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCCh-----HHHH
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTG-----FDVV 332 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg-----~Dv~ 332 (447)
.......+.+..+|+|.+|-.-+. ....+.++.+.|++.+.+ +++|++-|.+-++ .+.-
T Consensus 43 ~e~i~~~a~~~~~d~V~lS~~~~~---------------~~~~~~~~~~~L~~~~~~-~~~i~vGG~~~~~~~~~~~~~~ 106 (137)
T PRK02261 43 QEEFIDAAIETDADAILVSSLYGH---------------GEIDCRGLREKCIEAGLG-DILLYVGGNLVVGKHDFEEVEK 106 (137)
T ss_pred HHHHHHHHHHcCCCEEEEcCcccc---------------CHHHHHHHHHHHHhcCCC-CCeEEEECCCCCCccChHHHHH
Confidence 345677888999999999876442 234456777778877766 5889998888544 4567
Q ss_pred HHHHcCCCeeccCh
Q psy10999 333 VAALLGADEIGLST 346 (447)
Q Consensus 333 kAlaLGAd~V~iGt 346 (447)
++..+|.|.|+-+.
T Consensus 107 ~l~~~G~~~vf~~~ 120 (137)
T PRK02261 107 KFKEMGFDRVFPPG 120 (137)
T ss_pred HHHHcCCCEEECcC
Confidence 88999998886643
No 353
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=80.14 E-value=4.7 Score=39.32 Aligned_cols=88 Identities=7% Similarity=-0.021 Sum_probs=59.0
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.++..++. +.|+ ++.+-..++...+.++|+|.|.+==.+ . .|++.+.+|...
T Consensus 103 ~v~~~~~~~--~i~~----iPG~~TpsEi~~A~~~Ga~~vKlFPA~--~----------~G~~~ikal~~p--------- 155 (222)
T PRK07114 103 DIAKVCNRR--KVPY----SPGCGSLSEIGYAEELGCEIVKLFPGS--V----------YGPGFVKAIKGP--------- 155 (222)
T ss_pred HHHHHHHHc--CCCE----eCCCCCHHHHHHHHHCCCCEEEECccc--c----------cCHHHHHHHhcc---------
Confidence 445666654 4444 332334678889999999999884221 1 132333333211
Q ss_pred CCceEEEEcCCCCC-hHHHHHHHHcCCCeeccChHH
Q psy10999 314 RSRVVLQADGQIRT-GFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 314 r~~v~viadGGIrt-g~Dv~kAlaLGAd~V~iGt~~ 348 (447)
=..++++.+|||.- ..++..-+..||.+|++|+.+
T Consensus 156 ~p~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L 191 (222)
T PRK07114 156 MPWTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKL 191 (222)
T ss_pred CCCCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhh
Confidence 23699999999985 488999999999999999865
No 354
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=79.65 E-value=10 Score=36.00 Aligned_cols=69 Identities=23% Similarity=0.180 Sum_probs=52.6
Q ss_pred cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 257 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 257 Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
...+..+.+.+.++|+|-+|-.-. ++...+.++.+.|++.|++++++|++-|..-+. +.++ .
T Consensus 123 p~e~~v~~~~~~~pd~v~lS~~~~---------------~~~~~~~~~i~~l~~~~~~~~v~i~vGG~~~~~-~~~~--~ 184 (197)
T TIGR02370 123 PIDTVVEKVKKEKPLMLTGSALMT---------------TTMYGQKDINDKLKEEGYRDSVKFMVGGAPVTQ-DWAD--K 184 (197)
T ss_pred CHHHHHHHHHHcCCCEEEEccccc---------------cCHHHHHHHHHHHHHcCCCCCCEEEEEChhcCH-HHHH--H
Confidence 345667788899999999987522 234557888888999888888999999988875 4544 5
Q ss_pred cCCCeec
Q psy10999 337 LGADEIG 343 (447)
Q Consensus 337 LGAd~V~ 343 (447)
+|||++.
T Consensus 185 ~gad~~~ 191 (197)
T TIGR02370 185 IGADVYG 191 (197)
T ss_pred hCCcEEe
Confidence 6999874
No 355
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=79.10 E-value=20 Score=33.38 Aligned_cols=87 Identities=13% Similarity=0.033 Sum_probs=53.8
Q ss_pred HHHHHHHHhCCCCce--EEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 234 ELIYDLKCANPNARI--SVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI--~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+.++++|+. +..|+ .++ ..+....+..+.++|+|+|++ |++.. .......+.+++.
T Consensus 46 ~~v~~i~~~-~~~~v~v~lm---~~~~~~~~~~~~~~gadgv~v--h~~~~----------------~~~~~~~~~~~~~ 103 (210)
T TIGR01163 46 PVLEALRKY-TDLPIDVHLM---VENPDRYIEDFAEAGADIITV--HPEAS----------------EHIHRLLQLIKDL 103 (210)
T ss_pred HHHHHHHhc-CCCcEEEEee---eCCHHHHHHHHHHcCCCEEEE--ccCCc----------------hhHHHHHHHHHHc
Confidence 567788765 34564 355 235666777888999999998 32211 0112233444444
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
|+ .++..-...|..+.+++++.++|.+++++
T Consensus 104 g~----~~~~~~~~~t~~e~~~~~~~~~d~i~~~~ 134 (210)
T TIGR01163 104 GA----KAGIVLNPATPLEFLEYVLPDVDLVLLMS 134 (210)
T ss_pred CC----cEEEEECCCCCHHHHHHHHhhCCEEEEEE
Confidence 43 23333345678888999998999998765
No 356
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=78.86 E-value=18 Score=36.43 Aligned_cols=90 Identities=18% Similarity=0.023 Sum_probs=55.9
Q ss_pred HHHHHhCCCCceEEEEeeeccHH---HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 237 YDLKCANPNARISVKLVSEVGVG---VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 237 ~~Lr~~~p~~pI~VKlv~~~Gi~---~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+++++..+ .|+.+.+....+.. ..++.+.+.|+|+|.+.-.---.+ . ..+...+.++.+.+
T Consensus 108 ~~i~~~~~-~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p~~~-------~---~~~~~~i~~l~~~~----- 171 (299)
T cd02809 108 EEVAAAAP-GPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTPVLG-------R---RLTWDDLAWLRSQW----- 171 (299)
T ss_pred HHHHHhcC-CCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCCCCC-------C---CCCHHHHHHHHHhc-----
Confidence 34555455 48888876532332 234456778999998853211000 0 02234455554432
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
.+||++- ++.+..++.++...|||++.+.
T Consensus 172 --~~pvivK-~v~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 172 --KGPLILK-GILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred --CCCEEEe-ecCCHHHHHHHHHCCCCEEEEc
Confidence 4788875 5789999999999999999775
No 357
>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]
Probab=78.78 E-value=6.2 Score=39.47 Aligned_cols=64 Identities=20% Similarity=0.092 Sum_probs=46.1
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCC-hHH-----HHHH
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRT-GFD-----VVVA 334 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrt-g~D-----v~kA 334 (447)
.+..+++.|||+|.+ .+.|- + +...++.+.+ .+||+.+||=++ ..+ +..+
T Consensus 171 aaRlaaelGADIiK~-~ytg~--------------~--e~F~~vv~~~-------~vpVviaGG~k~~~~~~~l~~~~~a 226 (265)
T COG1830 171 AARLAAELGADIIKT-KYTGD--------------P--ESFRRVVAAC-------GVPVVIAGGPKTETEREFLEMVTAA 226 (265)
T ss_pred HHHHHHHhcCCeEee-cCCCC--------------h--HHHHHHHHhC-------CCCEEEeCCCCCCChHHHHHHHHHH
Confidence 344678999999987 34221 2 5667777764 499999999998 222 2457
Q ss_pred HHcCCCeeccChHH
Q psy10999 335 ALLGADEIGLSTAP 348 (447)
Q Consensus 335 laLGAd~V~iGt~~ 348 (447)
+.-||.++.+||=.
T Consensus 227 i~aGa~G~~~GRNi 240 (265)
T COG1830 227 IEAGAMGVAVGRNI 240 (265)
T ss_pred HHccCcchhhhhhh
Confidence 77899999999843
No 358
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=78.66 E-value=14 Score=37.06 Aligned_cols=54 Identities=9% Similarity=0.144 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEe--cCC
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVIS--GHD 279 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~Vs--G~~ 279 (447)
.-++.+..++|..||+.+|++||.+=.--..|.+. -+..+.++|+|.|..+ |-|
T Consensus 174 ~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlG 230 (274)
T cd07938 174 VATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLG 230 (274)
T ss_pred ccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccC
Confidence 34577888999999999888888876444456664 3556889999999654 554
No 359
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=78.53 E-value=41 Score=28.63 Aligned_cols=93 Identities=15% Similarity=0.057 Sum_probs=57.3
Q ss_pred HHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCC
Q psy10999 235 LIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLR 314 (447)
Q Consensus 235 ~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr 314 (447)
.+..+-+.. |..++.- ...+........+.+..+|+|.+|...+. ....+.+..+.+++.+.
T Consensus 18 ~~~~~l~~~-G~~V~~l-g~~~~~~~l~~~~~~~~pdvV~iS~~~~~---------------~~~~~~~~i~~l~~~~~- 79 (119)
T cd02067 18 IVARALRDA-GFEVIDL-GVDVPPEEIVEAAKEEDADAIGLSGLLTT---------------HMTLMKEVIEELKEAGL- 79 (119)
T ss_pred HHHHHHHHC-CCEEEEC-CCCCCHHHHHHHHHHcCCCEEEEeccccc---------------cHHHHHHHHHHHHHcCC-
Confidence 445444433 4454222 22233445667788999999999876332 22344555666666542
Q ss_pred CceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 315 SRVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 315 ~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
++++|++.|..-+. +.-.+..+|+|++.-..
T Consensus 80 ~~~~i~vGG~~~~~-~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 80 DDIPVLVGGAIVTR-DFKFLKEIGVDAYFGPA 110 (119)
T ss_pred CCCeEEEECCCCCh-hHHHHHHcCCeEEECCH
Confidence 36888888887775 33578889999885543
No 360
>PLN02623 pyruvate kinase
Probab=78.08 E-value=51 Score=36.75 Aligned_cols=105 Identities=18% Similarity=0.081 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCCh-HHHHHHHH
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW-ELGVAETH 305 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~-~~~L~ev~ 305 (447)
.+.+|+.+.-..++..+....|++|+=...|+...-+.+ + |+|+|.| |++-- --+.|+|- ..+..++.
T Consensus 301 r~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl-~-g~DgImI----grgDL-----gvelg~~~v~~~qk~Ii 369 (581)
T PLN02623 301 KDAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSII-T-ASDGAMV----ARGDL-----GAELPIEEVPLLQEEII 369 (581)
T ss_pred CCHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHH-H-hCCEEEE----Ccchh-----hhhcCcHHHHHHHHHHH
Confidence 455665443344444555567888854333443322222 2 9999999 22211 11234332 23445666
Q ss_pred HHHHhcCCCCceEEEEcCC-------CCCh-----HHHHHHHHcCCCeeccCh
Q psy10999 306 QVLALNNLRSRVVLQADGQ-------IRTG-----FDVVVAALLGADEIGLST 346 (447)
Q Consensus 306 ~~l~~~glr~~v~viadGG-------Irtg-----~Dv~kAlaLGAd~V~iGt 346 (447)
+.+.+.| .|++++.. -.++ .|++.++..|+|+|+++.
T Consensus 370 ~~~~~~g----KpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~ 418 (581)
T PLN02623 370 RRCRSMG----KPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSG 418 (581)
T ss_pred HHHHHhC----CCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecc
Confidence 6666554 67776551 1245 599999999999999874
No 361
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=77.98 E-value=17 Score=36.71 Aligned_cols=83 Identities=18% Similarity=0.112 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
++|+.+|+.. ++||+=|+ ..|....+..+.++|+|+|. .|.. -.|. .+.+...+.. .
T Consensus 55 ~~I~~Ik~~V-~iPVIGi~--K~~~~~Ea~~L~eaGvDiID------aT~r---------~rP~----~~~~~~iK~~-~ 111 (283)
T cd04727 55 KMIKEIMDAV-SIPVMAKV--RIGHFVEAQILEALGVDMID------ESEV---------LTPA----DEEHHIDKHK-F 111 (283)
T ss_pred HHHHHHHHhC-CCCeEEee--ehhHHHHHHHHHHcCCCEEe------ccCC---------CCcH----HHHHHHHHHH-c
Confidence 4577888765 78987653 23556788899999999993 2211 1142 3333333321 1
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeec
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIG 343 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~ 343 (447)
++++++ +++|-.+...|..+|||.|.
T Consensus 112 --~~l~MA--D~stleEal~a~~~Gad~I~ 137 (283)
T cd04727 112 --KVPFVC--GARNLGEALRRISEGAAMIR 137 (283)
T ss_pred --CCcEEc--cCCCHHHHHHHHHCCCCEEE
Confidence 355555 68899999999999999883
No 362
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=77.69 E-value=16 Score=37.55 Aligned_cols=100 Identities=18% Similarity=0.089 Sum_probs=57.9
Q ss_pred HHHHHHHHhCCCCceEEEEeeec----cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChH----HHHHHHH
Q psy10999 234 ELIYDLKCANPNARISVKLVSEV----GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE----LGVAETH 305 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~----Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~----~~L~ev~ 305 (447)
+.+..+|+.+|+.|+++-+.... .....+..+..+++|++.+. -.-.+ ......+.... ..|..+.
T Consensus 101 ~~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~-l~~~q-----~~~~~~~~~df~~~~~~i~~l~ 174 (326)
T cd02811 101 ESFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIH-LNPLQ-----EAVQPEGDRDFRGWLERIEELV 174 (326)
T ss_pred hHHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEe-CcchH-----hhcCCCCCcCHHHHHHHHHHHH
Confidence 67888899888789888765422 22334444556789998883 21100 00011121122 3344443
Q ss_pred HHHHhcCCCCceEEEEc--CCCCChHHHHHHHHcCCCeeccCh
Q psy10999 306 QVLALNNLRSRVVLQAD--GQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 306 ~~l~~~glr~~v~viad--GGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
+.+ ++||++= |--.+..++.+....|+|++.++.
T Consensus 175 ~~~-------~vPVivK~~g~g~s~~~a~~l~~~Gvd~I~vsG 210 (326)
T cd02811 175 KAL-------SVPVIVKEVGFGISRETAKRLADAGVKAIDVAG 210 (326)
T ss_pred Hhc-------CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 332 5888883 333566777777789999998765
No 363
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=77.63 E-value=25 Score=35.28 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=26.5
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEee--eccHHH---HHHHHH-HCCCcEEEEec
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVS--EVGVGV---VASGVA-KGKAEHIVISG 277 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~--~~Gi~~---~A~~a~-~aGaD~I~VsG 277 (447)
+.+++....+.+++..+..-|++-+.- .....+ .|.++. ++|||+|.+.|
T Consensus 59 tldem~~h~~aV~rg~~~~~vv~DmPf~sy~~~e~a~~na~rl~~eaGa~aVkiEg 114 (263)
T TIGR00222 59 TVADMIYHTAAVKRGAPNCLIVTDLPFMSYATPEQALKNAARVMQETGANAVKLEG 114 (263)
T ss_pred CHHHHHHHHHHHHhhCCCceEEeCCCcCCCCCHHHHHHHHHHHHHHhCCeEEEEcC
Confidence 456666677777776554233333221 001111 133444 48999999976
No 364
>PRK12346 transaldolase A; Provisional
Probab=77.38 E-value=34 Score=35.25 Aligned_cols=109 Identities=14% Similarity=0.048 Sum_probs=67.8
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCC-----ccccccccCCCChHHHHHHHHHHH
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGA-----SSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~-----a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
+.++.|... |.++-+=++- ....+..++++|+++|-. +=|+--. .+.....-.+.|....+.++.+..
T Consensus 140 ~A~~~L~~~--GI~~n~TliF---S~~Qa~~aa~AGa~~ISP--fVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~ 212 (316)
T PRK12346 140 RAAEELEKE--GINCNLTLLF---SFAQARACAEAGVFLISP--FVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYY 212 (316)
T ss_pred HHHHHHHHC--CCceeEEEec---CHHHHHHHHHcCCCEEEe--cccHHHHhhhhccccccccccCCChHHHHHHHHHHH
Confidence 455555543 5555555442 234566788999999832 2232100 000000012567788889999999
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcc
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc 354 (447)
+.+|.. +.+....+|+..+|. + ..|+|.+-+.-.+|-.+..
T Consensus 213 k~~~~~---T~Vm~ASfRn~~qi~-a-laG~d~lTi~p~ll~~L~~ 253 (316)
T PRK12346 213 KQHRYE---TIVMGASFRRTEQIL-A-LAGCDRLTISPNLLKELQE 253 (316)
T ss_pred HHcCCC---cEEEecccCCHHHHH-H-HhCCCEEeCCHHHHHHHHh
Confidence 887753 455667799999998 4 4599999998888776643
No 365
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=77.18 E-value=6.1 Score=39.39 Aligned_cols=60 Identities=15% Similarity=0.272 Sum_probs=43.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEE--EecCCCCCCCc
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIV--ISGHDGGTGAS 285 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~--VsG~~GGtg~a 285 (447)
.-+++++.++++.+|+..|+.||.+=.--..|.+. -+..+.++|+|.|. +.|-|.|+|.+
T Consensus 176 ~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGeraGn~ 238 (273)
T cd07941 176 GTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGERCGNA 238 (273)
T ss_pred CCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccccccccccc
Confidence 34678888999999998887788775433446654 34567899999997 56777766544
No 366
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=77.15 E-value=7.1 Score=38.88 Aligned_cols=77 Identities=17% Similarity=0.149 Sum_probs=49.3
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc-CCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN-NLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~-glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
.+|..+.+.|+|+|.|+|.+.. | +....+..+..++..+...+++. ++.-.|-++...+. .-++-|.+.|
T Consensus 33 ~ea~~l~~~GvDgiiveN~~D~----P--y~~~~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~---aalaiA~A~g 103 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENMGDV----P--YPKRVGPETVAAMARIAREVRREVSVPVGVNVLRNDPK---AALAIAAATG 103 (254)
T ss_pred HHHHHHHHCCCCEEEEecCCCC----C--ccCCCCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCH---HHHHHHHHhC
Confidence 3578889999999999998443 2 23446666888888877766543 11112333332222 2366788889
Q ss_pred CCeeccC
Q psy10999 339 ADEIGLS 345 (447)
Q Consensus 339 Ad~V~iG 345 (447)
||+|=+.
T Consensus 104 a~FIRv~ 110 (254)
T PF03437_consen 104 ADFIRVN 110 (254)
T ss_pred CCEEEec
Confidence 9998654
No 367
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=76.77 E-value=43 Score=33.36 Aligned_cols=105 Identities=16% Similarity=0.078 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeeec--cHHHHHHHHHHCCCcEEEEecCCCCCCCcccccc--ccCCCChHHHHHHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSEV--GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGI--KNAGLPWELGVAET 304 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~~--Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~--~~~G~p~~~~L~ev 304 (447)
.+.|.+.+...+.. .+.|++|=+.... .....|+.+.++|+|+|.+--+. |.... ..++. ....+.++
T Consensus 74 ~~~~~~~~~~~~~~-~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~c------P~~~~~g~~~~~-~~~~~~ei 145 (296)
T cd04740 74 VEAFLEELLPWLRE-FGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISC------PNVKGGGMAFGT-DPEAVAEI 145 (296)
T ss_pred HHHHHHHHHHHhhc-CCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCC------CCCCCCcccccC-CHHHHHHH
Confidence 45566666665553 3568888765321 22345667788999999884211 10000 11221 12556666
Q ss_pred HHHHHhcCCCCceEEEE--cCCCCChHHHHH-HHHcCCCeecc
Q psy10999 305 HQVLALNNLRSRVVLQA--DGQIRTGFDVVV-AALLGADEIGL 344 (447)
Q Consensus 305 ~~~l~~~glr~~v~via--dGGIrtg~Dv~k-AlaLGAd~V~i 344 (447)
.+++++.- ++||++ +..+.+..++++ +...|||++.+
T Consensus 146 v~~vr~~~---~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 146 VKAVKKAT---DVPVIVKLTPNVTDIVEIARAAEEAGADGLTL 185 (296)
T ss_pred HHHHHhcc---CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence 66665431 467775 444445667776 55699998754
No 368
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=76.65 E-value=16 Score=35.87 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEe--cCCCCCC
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVIS--GHDGGTG 283 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~Vs--G~~GGtg 283 (447)
.-.++++.+++..+|+.+| .|+.+=.--..|.+. -+..+.++|+|.|..+ |-|+++|
T Consensus 164 ~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~~aG 223 (259)
T cd07939 164 ILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGERAG 223 (259)
T ss_pred CCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccccccc
Confidence 3457888999999999876 677665433446654 3456789999999654 6655544
No 369
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=76.40 E-value=16 Score=36.87 Aligned_cols=55 Identities=11% Similarity=0.115 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEe--cCCC
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVIS--GHDG 280 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~Vs--G~~G 280 (447)
.-++.+..+++..||+.+|+.||.+=.--..|.+. -+..+.++|+|.|..+ |-||
T Consensus 180 ~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGe 237 (287)
T PRK05692 180 VGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGG 237 (287)
T ss_pred ccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCC
Confidence 34677888999999998877788775433456654 3456789999999654 5544
No 370
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=75.93 E-value=39 Score=35.67 Aligned_cols=105 Identities=20% Similarity=0.133 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeee-c--cHHHHHHHHHHCCCcEEEEec-----CCC-CCCCccccccccCCCChHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSE-V--GVGVVASGVAKGKAEHIVISG-----HDG-GTGASSWTGIKNAGLPWEL 299 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~-~--Gi~~~A~~a~~aGaD~I~VsG-----~~G-Gtg~a~~~~~~~~G~p~~~ 299 (447)
++.|.+.+.+++...++.|+++=+... . ...+.+..+.++|+|+|.+-= ... +.|.. .+ -...
T Consensus 83 ~~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~-------~~-~~~~ 154 (420)
T PRK08318 83 LEVNLREIRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSA-------VG-QVPE 154 (420)
T ss_pred HHHHHHHHHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCccc-------cc-CCHH
Confidence 455656677777666666776665432 1 122345567789999998731 100 11111 01 2335
Q ss_pred HHHHHHHHHHhcCCCCceEEEE--cCCCCChHHHHH-HHHcCCCeecc
Q psy10999 300 GVAETHQVLALNNLRSRVVLQA--DGQIRTGFDVVV-AALLGADEIGL 344 (447)
Q Consensus 300 ~L~ev~~~l~~~glr~~v~via--dGGIrtg~Dv~k-AlaLGAd~V~i 344 (447)
.+.++.+.+++. -++||++ .-.+.+-.++++ +...|||++.+
T Consensus 155 ~~~~i~~~v~~~---~~~Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~ 199 (420)
T PRK08318 155 LVEMYTRWVKRG---SRLPVIVKLTPNITDIREPARAAKRGGADAVSL 199 (420)
T ss_pred HHHHHHHHHHhc---cCCcEEEEcCCCcccHHHHHHHHHHCCCCEEEE
Confidence 677777776553 1477776 445556667877 45689999884
No 371
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=75.84 E-value=9.5 Score=38.34 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=42.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEE--EecCCCCCCC
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIV--ISGHDGGTGA 284 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~--VsG~~GGtg~ 284 (447)
.-++++..+++..+|+.+|+.|+.+=.--..|.+. -+..+.++|+|.|. +.|-|+++|.
T Consensus 172 ~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe~aGN 233 (280)
T cd07945 172 ILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGERAGN 233 (280)
T ss_pred CCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccccccC
Confidence 34567788899999998888888765433456664 34568899999997 5566666554
No 372
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=75.11 E-value=12 Score=41.52 Aligned_cols=62 Identities=21% Similarity=0.192 Sum_probs=44.9
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHH-HHHHHHCCCcEEE--EecCCCCCCCccc
Q psy10999 225 DIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVV-ASGVAKGKAEHIV--ISGHDGGTGASSW 287 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~-A~~a~~aGaD~I~--VsG~~GGtg~a~~ 287 (447)
..-++.+..++|..||+.++ +||.+=.-...|.+.. ...+.++|||.|+ ++|-+|++|.++.
T Consensus 173 G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~tGn~~l 237 (582)
T TIGR01108 173 GILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMSGGTSHPPT 237 (582)
T ss_pred CCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccccccccChhH
Confidence 34457778899999999875 7887654444566643 4568899999995 5688888876654
No 373
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=75.10 E-value=12 Score=40.95 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=46.1
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..+..+.++|+|+|+|+...|.+- -....+..+.+.. ... -.+..|-|.|..++..++..||
T Consensus 245 ~ra~~Lv~aGvd~i~vd~a~g~~~------------~~~~~i~~ir~~~-----~~~-~~V~aGnV~t~e~a~~li~aGA 306 (502)
T PRK07107 245 ERVPALVEAGADVLCIDSSEGYSE------------WQKRTLDWIREKY-----GDS-VKVGAGNVVDREGFRYLAEAGA 306 (502)
T ss_pred HHHHHHHHhCCCeEeecCcccccH------------HHHHHHHHHHHhC-----CCC-ceEEeccccCHHHHHHHHHcCC
Confidence 346678899999999985444210 1133444444332 112 3567899999999999999999
Q ss_pred CeeccC
Q psy10999 340 DEIGLS 345 (447)
Q Consensus 340 d~V~iG 345 (447)
|++-+|
T Consensus 307 d~I~vg 312 (502)
T PRK07107 307 DFVKVG 312 (502)
T ss_pred CEEEEC
Confidence 998665
No 374
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=74.99 E-value=16 Score=36.56 Aligned_cols=58 Identities=22% Similarity=0.208 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEE--EecCCCCCCC
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIV--ISGHDGGTGA 284 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~--VsG~~GGtg~ 284 (447)
.-.++++.+++..+|+.++ .||.+=.--..|.+. -+..+.++|++.|. +.|-|+++|.
T Consensus 174 ~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN 234 (275)
T cd07937 174 LLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQ 234 (275)
T ss_pred CCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCC
Confidence 3457788899999999886 677665322345554 34567899999997 5577666543
No 375
>PRK08185 hypothetical protein; Provisional
Probab=74.92 E-value=62 Score=32.75 Aligned_cols=81 Identities=11% Similarity=0.058 Sum_probs=52.9
Q ss_pred HHHHHHH-CCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHH-HHHHHHcC
Q psy10999 261 VASGVAK-GKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFD-VVVAALLG 338 (447)
Q Consensus 261 ~A~~a~~-aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~D-v~kAlaLG 338 (447)
.|....+ .|+|++-++=.. .|....... ...+. .+.|.++++.+ ++||.+-||+..+.| +.||+.+|
T Consensus 153 ea~~f~~~TgvD~LAvaiGt--~HG~y~~~~-kp~L~-~e~l~~I~~~~-------~iPLVlHGgsg~~~e~~~~ai~~G 221 (283)
T PRK08185 153 QAEDFVSRTGVDTLAVAIGT--AHGIYPKDK-KPELQ-MDLLKEINERV-------DIPLVLHGGSANPDAEIAESVQLG 221 (283)
T ss_pred HHHHHHHhhCCCEEEeccCc--ccCCcCCCC-CCCcC-HHHHHHHHHhh-------CCCEEEECCCCCCHHHHHHHHHCC
Confidence 3445554 499999886321 111100000 11222 56777777764 599999999977755 56799999
Q ss_pred CCeeccChHHHHHh
Q psy10999 339 ADEIGLSTAPLITM 352 (447)
Q Consensus 339 Ad~V~iGt~~L~al 352 (447)
..-|-++|-+..+.
T Consensus 222 I~KiNi~T~l~~a~ 235 (283)
T PRK08185 222 VGKINISSDMKYAF 235 (283)
T ss_pred CeEEEeChHHHHHH
Confidence 99999999887664
No 376
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=74.56 E-value=21 Score=33.84 Aligned_cols=69 Identities=20% Similarity=0.165 Sum_probs=51.2
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHc
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALL 337 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaL 337 (447)
.......+.+..+|+|-+|..-+. ....+.++.+.|++.+.+++++|++-|..-+. +. +-.+
T Consensus 122 ~~~l~~~~~~~~~d~v~lS~~~~~---------------~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~~~-~~--~~~~ 183 (201)
T cd02070 122 PEEFVEAVKEHKPDILGLSALMTT---------------TMGGMKEVIEALKEAGLRDKVKVMVGGAPVNQ-EF--ADEI 183 (201)
T ss_pred HHHHHHHHHHcCCCEEEEeccccc---------------cHHHHHHHHHHHHHCCCCcCCeEEEECCcCCH-HH--HHHc
Confidence 455677788999999999875332 33557777788888776668999999988885 44 5556
Q ss_pred CCCeecc
Q psy10999 338 GADEIGL 344 (447)
Q Consensus 338 GAd~V~i 344 (447)
|||++.-
T Consensus 184 GaD~~~~ 190 (201)
T cd02070 184 GADGYAE 190 (201)
T ss_pred CCcEEEC
Confidence 9998753
No 377
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=74.40 E-value=37 Score=34.03 Aligned_cols=102 Identities=17% Similarity=0.130 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeee--ccHHHHHHHHHHCC-CcEEEEec-----CCCCCCCccccccccCCCChHHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSE--VGVGVVASGVAKGK-AEHIVISG-----HDGGTGASSWTGIKNAGLPWELG 300 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~--~Gi~~~A~~a~~aG-aD~I~VsG-----~~GGtg~a~~~~~~~~G~p~~~~ 300 (447)
++.|.+.+...+..+ +.|+++=+... ......|+.+.++| +|+|.+-- ..| |.. .+. ....
T Consensus 76 ~~~~~~~~~~~~~~~-~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~g--g~~-------~~~-~~~~ 144 (301)
T PRK07259 76 VDAFIEEELPWLEEF-DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHG--GMA-------FGT-DPEL 144 (301)
T ss_pred HHHHHHHHHHHHhcc-CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCC--ccc-------ccc-CHHH
Confidence 455655555544433 56888876431 12334566778898 99998832 111 111 111 2245
Q ss_pred HHHHHHHHHhcCCCCceEEEEc--CCCCChHHHHHHH-HcCCCeecc
Q psy10999 301 VAETHQVLALNNLRSRVVLQAD--GQIRTGFDVVVAA-LLGADEIGL 344 (447)
Q Consensus 301 L~ev~~~l~~~glr~~v~viad--GGIrtg~Dv~kAl-aLGAd~V~i 344 (447)
+.++.+++++.- ++||++- ..+.+..++++.+ ..|||++.+
T Consensus 145 ~~eiv~~vr~~~---~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~ 188 (301)
T PRK07259 145 AYEVVKAVKEVV---KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL 188 (301)
T ss_pred HHHHHHHHHHhc---CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence 666666655431 5777773 3344555677644 689998754
No 378
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=74.09 E-value=10 Score=37.33 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=39.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEE--ecCCCCCCC
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVI--SGHDGGTGA 284 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~V--sG~~GGtg~ 284 (447)
.-.+++..++++.+|+.++..|+.+=.--..|.+. -+..+.++|+|.|+. .|-|+++|.
T Consensus 166 ~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~~aGN 227 (263)
T cd07943 166 AMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGAGAGN 227 (263)
T ss_pred CcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccCCcCC
Confidence 34577888999999998754466554322345554 355678999999965 477676554
No 379
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=73.85 E-value=4.4 Score=40.54 Aligned_cols=101 Identities=19% Similarity=0.205 Sum_probs=49.7
Q ss_pred HHHHHHHh-CCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCC---CCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 235 LIYDLKCA-NPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGG---TGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 235 ~I~~Lr~~-~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GG---tg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
.++.||+. ..+.||+-= ..|.+..|+.+.+.|+|+|++-+.| + .|.+.+..+...|-.....+.-..+.|..
T Consensus 3 il~~l~~~i~~~~pIig~---gaGtGlsAk~ae~gGaDlI~~ynsG-rfR~~G~~SlagllpygnaN~iv~em~~eiLp~ 78 (268)
T PF09370_consen 3 ILDRLRAQIKAGKPIIGA---GAGTGLSAKCAEKGGADLILIYNSG-RFRMAGRGSLAGLLPYGNANEIVMEMAREILPV 78 (268)
T ss_dssp HHHHHHHHHHTT--EEEE---EESSHHHHHHHHHTT-SEEEE-HHH-HHHHTT--GGGGGBTEEEHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHhCCCceEEE---eeccchhhHHHHhcCCCEEEEecch-hHhhCCCcchhhhhcccCHhHHHHHHHHhhhhh
Confidence 45555542 224566433 4589999999999999999997762 2 11112222223344455555555555543
Q ss_pred cCCCCceEEEEcCCCCCh----HHHH-HHHHcCCCee
Q psy10999 311 NNLRSRVVLQADGQIRTG----FDVV-VAALLGADEI 342 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg----~Dv~-kAlaLGAd~V 342 (447)
-.++||++-=.-.++ .... ....+|-.+|
T Consensus 79 ---v~~tPViaGv~atDP~~~~~~fl~~lk~~Gf~GV 112 (268)
T PF09370_consen 79 ---VKDTPVIAGVCATDPFRDMDRFLDELKELGFSGV 112 (268)
T ss_dssp ----SSS-EEEEE-TT-TT--HHHHHHHHHHHT-SEE
T ss_pred ---ccCCCEEEEecCcCCCCcHHHHHHHHHHhCCceE
Confidence 236999984433333 2222 3334566555
No 380
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=73.68 E-value=22 Score=36.64 Aligned_cols=82 Identities=21% Similarity=0.214 Sum_probs=54.0
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..+..+.++|+|.|-|. |+.|-+++...+ .....+....+.++.+.++ +.++.+++.-|+.+-.|+-+|...|+
T Consensus 28 ~ia~~Ld~aGV~~IEvg-~g~gl~g~s~~~-G~~~~~~~e~i~~~~~~~~----~~~~~~ll~pg~~~~~dl~~a~~~gv 101 (333)
T TIGR03217 28 AIAAALDEAGVDAIEVT-HGDGLGGSSFNY-GFSAHTDLEYIEAAADVVK----RAKVAVLLLPGIGTVHDLKAAYDAGA 101 (333)
T ss_pred HHHHHHHHcCCCEEEEe-cCCCCCCccccC-CCCCCChHHHHHHHHHhCC----CCEEEEEeccCccCHHHHHHHHHCCC
Confidence 34567788999999994 443322211110 0123355566666666542 34577778888999999999999999
Q ss_pred CeeccChH
Q psy10999 340 DEIGLSTA 347 (447)
Q Consensus 340 d~V~iGt~ 347 (447)
+.|-+.+.
T Consensus 102 d~iri~~~ 109 (333)
T TIGR03217 102 RTVRVATH 109 (333)
T ss_pred CEEEEEec
Confidence 99888754
No 381
>PLN02363 phosphoribosylanthranilate isomerase
Probab=73.64 E-value=41 Score=33.46 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHH---CCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAK---GKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~---aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
+.+..|+.. .+| +|.+.............. ..+|++.++...||||.+ .|| +.+..
T Consensus 135 ~~~~~l~~~---~~i-ikai~v~~~~~~~~~~~~~~~~~~D~~LlDs~~GGtG~t-----~DW------------~~l~~ 193 (256)
T PLN02363 135 AAFSRLVRE---RKV-IYVLNANEDGKLLNVVPEEDCHLADWILVDSATGGSGKG-----FNW------------QNFKL 193 (256)
T ss_pred HHHHHhhcC---CcE-EEEEEECchHHHHHHHHhhccccCCEEEEeCCCCCCCCc-----cCH------------HHhcc
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHH-cCCCeeccChHHHHHhcc-cchhcccCCCCcccccccCHHHHhhcCCcHHHHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAAL-LGADEIGLSTAPLITMGC-TMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVI 388 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAla-LGAd~V~iGt~~L~algc-~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~ 388 (447)
..+....|+|.+||| ++..|..|+. ++..+|=+.+.+=..-|. .- .+.+.
T Consensus 194 ~~~~~~~p~iLAGGL-~peNV~~ai~~~~P~GVDVsSGVE~~pG~~KD---------------------------~~KI~ 245 (256)
T PLN02363 194 PSVRSRNGWLLAGGL-TPENVHEAVSLLKPTGVDVSSGICGPDGIRKD---------------------------PSKIS 245 (256)
T ss_pred cccccCCCEEEECCC-CHHHHHHHHHhcCCcEEEeCCcccCCCCcccC---------------------------HHHHH
Q ss_pred HHHHHHHH
Q psy10999 389 NYLFMLAE 396 (447)
Q Consensus 389 ~~l~~l~~ 396 (447)
.|++.++.
T Consensus 246 ~fv~~vr~ 253 (256)
T PLN02363 246 SFISAVKS 253 (256)
T ss_pred HHHHHHHh
No 382
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=73.34 E-value=14 Score=40.17 Aligned_cols=67 Identities=13% Similarity=0.085 Sum_probs=46.5
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGA 339 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGA 339 (447)
..+..+.++|+|.|+|+-..|- +.-....+.++.+.. .++ .+..|-+.|......++.+||
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~------------~~~~~~~i~~ik~~~------p~~-~v~agnv~t~~~a~~l~~aGa 290 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGH------------QEKMLEALRAVRALD------PGV-PIVAGNVVTAEGTRDLVEAGA 290 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCc------------cHHHHHHHHHHHHHC------CCC-eEEeeccCCHHHHHHHHHcCC
Confidence 3455678899999999976553 122344455554432 134 556799999999999999999
Q ss_pred CeeccC
Q psy10999 340 DEIGLS 345 (447)
Q Consensus 340 d~V~iG 345 (447)
|+|.+|
T Consensus 291 d~v~vg 296 (479)
T PRK07807 291 DIVKVG 296 (479)
T ss_pred CEEEEC
Confidence 986544
No 383
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=72.82 E-value=38 Score=33.73 Aligned_cols=99 Identities=17% Similarity=0.108 Sum_probs=52.8
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHH---HHHHHHHHCCCc-EEEEe-cCCCCCCCccccccccCCCChHHHHHHHHHHH
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVG---VVASGVAKGKAE-HIVIS-GHDGGTGASSWTGIKNAGLPWELGVAETHQVL 308 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~---~~A~~a~~aGaD-~I~Vs-G~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l 308 (447)
++++.+-+. ++||++|-..-.-+. ..++.+.+.|.. ++.+. |. ++.-. ... -...+.+++...+..
T Consensus 113 ~LL~~va~t--gkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~---~~Y~~--~~~--n~~dl~ai~~lk~~~ 183 (250)
T PRK13397 113 EFLKTLSHI--DKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGV---RGYDV--ETR--NMLDIMAVPIIQQKT 183 (250)
T ss_pred HHHHHHHcc--CCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc---CCCCC--ccc--cccCHHHHHHHHHHh
Confidence 345555443 689999943101112 234456677874 55554 43 11100 000 023445555555432
Q ss_pred HhcCCCCceEEEEc----CCCCC--hHHHHHHHHcCCCeeccChHH
Q psy10999 309 ALNNLRSRVVLQAD----GQIRT--GFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 309 ~~~glr~~v~viad----GGIrt--g~Dv~kAlaLGAd~V~iGt~~ 348 (447)
.+||++| +|.|. ..-...|+++|||++++=+.+
T Consensus 184 -------~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 184 -------DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred -------CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 4899997 44433 122457889999988877654
No 384
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=71.46 E-value=53 Score=33.27 Aligned_cols=115 Identities=10% Similarity=-0.047 Sum_probs=71.2
Q ss_pred HHHHCCCcEEEEecCCCCCCCccccccccCCCC--hHHHHHHHHHHHHhcCCCCceEEEEcCCCCCh-HHHHHHHHcCCC
Q psy10999 264 GVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP--WELGVAETHQVLALNNLRSRVVLQADGQIRTG-FDVVVAALLGAD 340 (447)
Q Consensus 264 ~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p--~~~~L~ev~~~l~~~glr~~v~viadGGIrtg-~Dv~kAlaLGAd 340 (447)
-+.+.|+|.+-|+- |..|.. ..+ | ..+.|.++++.+ ++||..-||=.++ .|+.+|+.+|..
T Consensus 161 Fv~~TgvD~LAvai--Gt~HG~------Y~~-p~l~~~~l~~I~~~~-------~vPLVlHGgSG~~~e~~~~ai~~Gi~ 224 (283)
T PRK07998 161 FVERTGCDMLAVSI--GNVHGL------EDI-PRIDIPLLKRIAEVS-------PVPLVIHGGSGIPPEILRSFVNYKVA 224 (283)
T ss_pred HHHHhCcCeeehhc--cccccC------CCC-CCcCHHHHHHHHhhC-------CCCEEEeCCCCCCHHHHHHHHHcCCc
Confidence 45678999998864 223321 112 3 246778887753 6999999998888 567789999999
Q ss_pred eeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy10999 341 EIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFD 410 (447)
Q Consensus 341 ~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~ 410 (447)
-|-++|-+..+..-....... +-|. .++ -..-.....+.+.+.+++.|.+ +|..
T Consensus 225 KiNi~Tel~~a~~~~~~~~l~--~~~~-----------~~d-~~~~~~~~~~~~~~~v~~~i~~--~gs~ 278 (283)
T PRK07998 225 KVNIASDLRKAFITTVGKAYV--NNHN-----------EAN-LARVMAKAKQAVEEDVYSKIKM--MNSN 278 (283)
T ss_pred EEEECHHHHHHHHHHHHHHHH--hCcC-----------cCC-HHHHHHHHHHHHHHHHHHHHHH--hCCC
Confidence 999999887664322100000 0000 000 0122334456777888888888 7754
No 385
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=71.01 E-value=19 Score=39.26 Aligned_cols=60 Identities=18% Similarity=0.225 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHHHhCC-CCceEEEEeeeccHHHH-HHHHHHCCCcEEEE--ecCCCCCCC
Q psy10999 225 DIYSIEDLAELIYDLKCANP-NARISVKLVSEVGVGVV-ASGVAKGKAEHIVI--SGHDGGTGA 284 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p-~~pI~VKlv~~~Gi~~~-A~~a~~aGaD~I~V--sG~~GGtg~ 284 (447)
.+-+++...++|..||+.+| ++||.+=.-...|.+.. ...+.++|||.|+. +|-++|+|.
T Consensus 179 Gll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg~~aGn 242 (499)
T PRK12330 179 ALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGPGH 242 (499)
T ss_pred cCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecccccccccc
Confidence 34467788899999999886 78888764444566653 45688999999964 566666654
No 386
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=70.73 E-value=51 Score=35.24 Aligned_cols=51 Identities=10% Similarity=0.106 Sum_probs=32.1
Q ss_pred CHHHHHHHHHHHHHhCC-CCceEEEEeeecc----HHHHHHHHHHCCCcEEEEecC
Q psy10999 228 SIEDLAELIYDLKCANP-NARISVKLVSEVG----VGVVASGVAKGKAEHIVISGH 278 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p-~~pI~VKlv~~~G----i~~~A~~a~~aGaD~I~VsG~ 278 (447)
+++.+.+.|.++|+..+ +.|+.|-++.... .....+.+.+.|+..|..+++
T Consensus 49 ~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~ 104 (418)
T cd04742 49 PLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAF 104 (418)
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEeccc
Confidence 45677778888887533 6688887764211 112234566788888777654
No 387
>PRK05269 transaldolase B; Provisional
Probab=70.72 E-value=60 Score=33.41 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=65.0
Q ss_pred HHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCcccccccc-------------CCCChHHHH
Q psy10999 235 LIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKN-------------AGLPWELGV 301 (447)
Q Consensus 235 ~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~-------------~G~p~~~~L 301 (447)
.++.|... |+++-+=++- ....|..++++|+++|-. +=|+ +++ .+.|....+
T Consensus 142 A~~~L~~~--GI~vn~TlvF---s~~Qa~~aa~AGa~~ISP--fVgR--------i~d~~~~~~~~~~~~~~~~~Gv~~v 206 (318)
T PRK05269 142 AAEQLEKE--GINCNLTLLF---SFAQARACAEAGVFLISP--FVGR--------ILDWYKKNTGKKEYAPAEDPGVVSV 206 (318)
T ss_pred HHHHHHHc--CCceeEeEec---CHHHHHHHHHcCCCEEEe--eccH--------HHHHhhhcccccccCcCCCcHHHHH
Confidence 44455443 4444444332 224566788999998833 2222 111 256778889
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhc
Q psy10999 302 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMG 353 (447)
Q Consensus 302 ~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~alg 353 (447)
.++.+..+.+|.. ..|++ -.+|+..+|.. ..|+|.+-+.-..|-.+.
T Consensus 207 ~~i~~~~k~~~~~--t~im~-ASfrn~~~v~~--laG~d~vTi~p~ll~~l~ 253 (318)
T PRK05269 207 TKIYNYYKKHGYK--TVVMG-ASFRNTGQILE--LAGCDRLTISPALLEELA 253 (318)
T ss_pred HHHHHHHHHcCCC--ceEEe-eccCCHHHHHH--HhCCCeEECCHHHHHHHH
Confidence 9999999888764 34444 58999999986 569999988887777664
No 388
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=70.40 E-value=14 Score=36.83 Aligned_cols=76 Identities=12% Similarity=0.153 Sum_probs=47.6
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc-CCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN-NLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~-glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
.+|....+.|+|+|.|+|++.. |. ..+.+.-+..++..+...++.. ++.-.|-++.-.++ .-++-|.+.|
T Consensus 32 ~ea~~l~~~GvD~viveN~~d~----P~--~~~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~---aal~iA~a~g 102 (257)
T TIGR00259 32 KDAMALEEGGVDAVMFENFFDA----PF--LKEVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAV---AALAIAMAVG 102 (257)
T ss_pred HHHHHHHhCCCCEEEEecCCCC----CC--cCCCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCH---HHHHHHHHhC
Confidence 4677889999999999999442 22 2256767888888887766432 11111223332322 2356677789
Q ss_pred CCeecc
Q psy10999 339 ADEIGL 344 (447)
Q Consensus 339 Ad~V~i 344 (447)
|++|-+
T Consensus 103 a~FIRv 108 (257)
T TIGR00259 103 AKFIRV 108 (257)
T ss_pred CCEEEE
Confidence 998865
No 389
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=70.25 E-value=35 Score=34.08 Aligned_cols=91 Identities=12% Similarity=0.178 Sum_probs=50.2
Q ss_pred HHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCCh--HHHH-HHHHcCC
Q psy10999 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTG--FDVV-VAALLGA 339 (447)
Q Consensus 263 ~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg--~Dv~-kAlaLGA 339 (447)
..+.+.|+|+|.+-|..|-.. .+..++-..-+..+.+..+ +| +...|...+. .+.+ .|-.+||
T Consensus 27 ~~l~~~Gv~Gl~~~GstGE~~----------~Lt~eEr~~l~~~~~~~~~---~v-i~gvg~~~~~~ai~~a~~a~~~Ga 92 (279)
T cd00953 27 ENLISKGIDYVFVAGTTGLGP----------SLSFQEKLELLKAYSDITD---KV-IFQVGSLNLEESIELARAAKSFGI 92 (279)
T ss_pred HHHHHcCCcEEEEcccCCCcc----------cCCHHHHHHHHHHHHHHcC---CE-EEEeCcCCHHHHHHHHHHHHHcCC
Confidence 345678999999988755421 2233322222222222222 33 3333433322 2222 4556999
Q ss_pred CeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHH
Q psy10999 340 DEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAE 396 (447)
Q Consensus 340 d~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~ 396 (447)
|++++-.|+.+.. ..++++..|+..+.+
T Consensus 93 d~v~v~~P~y~~~-----------------------------~~~~~i~~yf~~v~~ 120 (279)
T cd00953 93 YAIASLPPYYFPG-----------------------------IPEEWLIKYFTDISS 120 (279)
T ss_pred CEEEEeCCcCCCC-----------------------------CCHHHHHHHHHHHHh
Confidence 9999999875320 136788888888877
No 390
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=69.88 E-value=42 Score=33.07 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHH-H----HHHHHHHCCCcEEEEecC
Q psy10999 225 DIYSIEDLAELIYDLKCANPNARISVKLVSEVGVG-V----VASGVAKGKAEHIVISGH 278 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~-~----~A~~a~~aGaD~I~VsG~ 278 (447)
...+.+++...++.+++..+..||++=+-...|-. . .++.+.++||++|.+.+.
T Consensus 53 ~~vtl~em~~~~~~I~r~~~~~pviaD~~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~ 111 (240)
T cd06556 53 LPYPVNDVPYHVRAVRRGAPLALIVADLPFGAYGAPTAAFELAKTFMRAGAAGVKIEGG 111 (240)
T ss_pred CCcCHHHHHHHHHHHHhhCCCCCEEEeCCCCCCcCHHHHHHHHHHHHHcCCcEEEEcCc
Confidence 34567888888888888776678888754432211 2 255678899999999773
No 391
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=69.50 E-value=55 Score=33.53 Aligned_cols=90 Identities=20% Similarity=0.165 Sum_probs=50.6
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccH-HHH--------------------------HHHHHHCCCcEEEEecCCC
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGV-GVV--------------------------ASGVAKGKAEHIVISGHDG 280 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi-~~~--------------------------A~~a~~aGaD~I~VsG~~G 280 (447)
+.+.+.+.|+++|+...+ |+.|.+...... ... ...+.+.++++|..+
T Consensus 46 ~~~~l~~~i~~~~~~t~~-pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---- 120 (330)
T PF03060_consen 46 TPEQLREEIRKIRALTDK-PFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFG---- 120 (330)
T ss_dssp SHHHHHHHHHHHHHH-SS--EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEE----
T ss_pred ChHHHHHHHHHHHhhccc-cccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEee----
Confidence 346677778888877654 888877642111 111 112334566677663
Q ss_pred CCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 281 GTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 281 Gtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
+|.|+...+.++++ .| +.++. -+.|..++.++...|+|++.+
T Consensus 121 ------------~G~p~~~~i~~l~~----~g----i~v~~--~v~s~~~A~~a~~~G~D~iv~ 162 (330)
T PF03060_consen 121 ------------FGLPPPEVIERLHA----AG----IKVIP--QVTSVREARKAAKAGADAIVA 162 (330)
T ss_dssp ------------SSSC-HHHHHHHHH----TT-----EEEE--EESSHHHHHHHHHTT-SEEEE
T ss_pred ------------cccchHHHHHHHHH----cC----Ccccc--ccCCHHHHHHhhhcCCCEEEE
Confidence 24565555544443 33 66665 456999999999999998754
No 392
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=69.37 E-value=1.2e+02 Score=30.79 Aligned_cols=109 Identities=17% Similarity=-0.015 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHHh--CCCCceEEEEee---eccHHH---HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCCh
Q psy10999 226 IYSIEDLAELIYDLKCA--NPNARISVKLVS---EVGVGV---VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW 297 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~--~p~~pI~VKlv~---~~Gi~~---~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~ 297 (447)
+.+.+++.+.|+..++. .++.+|+...=+ ..|+.. -++...++|||.|-|-+ + .++
T Consensus 131 l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~~---~-------------~~~ 194 (285)
T TIGR02320 131 QASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIHS---R-------------KKD 194 (285)
T ss_pred ccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEecC---C-------------CCC
Confidence 44677777888887765 444556555111 123332 34567899999999962 1 123
Q ss_pred HHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 298 ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 298 ~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
..-+.+..+.+.. .-.++||++-.+-.-...+...-.||...|.+|..++.+.
T Consensus 195 ~~ei~~~~~~~~~--~~p~~pl~~~~~~~~~~~~~eL~~lG~~~v~~~~~~~~aa 247 (285)
T TIGR02320 195 PDEILEFARRFRN--HYPRTPLVIVPTSYYTTPTDEFRDAGISVVIYANHLLRAA 247 (285)
T ss_pred HHHHHHHHHHhhh--hCCCCCEEEecCCCCCCCHHHHHHcCCCEEEEhHHHHHHH
Confidence 3445555554421 1114566653321111135566678999999998776543
No 393
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=69.28 E-value=60 Score=33.35 Aligned_cols=99 Identities=16% Similarity=0.064 Sum_probs=65.2
Q ss_pred HHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccC-------------CCChHHHH
Q psy10999 235 LIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNA-------------GLPWELGV 301 (447)
Q Consensus 235 ~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~-------------G~p~~~~L 301 (447)
.++.|... |+++-+=++- ....|..++++|+++|-. +=|+ +++| +-|....+
T Consensus 140 A~~~L~~~--GI~vn~TlvF---S~~Qa~~aa~AGa~~ISP--fVgR--------i~d~~~~~~~~~~~~~~~d~Gv~~v 204 (313)
T cd00957 140 AAKQLEKE--GIHCNLTLLF---SFAQAVACAEAGVTLISP--FVGR--------ILDWYKKHSGDKAYTAEEDPGVASV 204 (313)
T ss_pred HHHHHHHC--CCceeeeeec---CHHHHHHHHHcCCCEEEe--ecch--------HHHhhhhccccccCCccCCcHHHHH
Confidence 44555443 4444444332 224566788999998832 2222 1222 22667788
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhc
Q psy10999 302 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMG 353 (447)
Q Consensus 302 ~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~alg 353 (447)
.++.+.++.+|.. +.+....+|+..+|.. ..|+|.+-+.-..|-.+.
T Consensus 205 ~~i~~~~~~~~~~---T~vmaASfRn~~~v~~--laG~d~~Ti~p~ll~~L~ 251 (313)
T cd00957 205 KKIYNYYKKFGYK---TKVMGASFRNIGQILA--LAGCDYLTISPALLEELK 251 (313)
T ss_pred HHHHHHHHHcCCC---cEEEecccCCHHHHHH--HhCCCeEEcCHHHHHHHH
Confidence 8999998887754 3555778999999986 579999999988877663
No 394
>PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional
Probab=69.24 E-value=38 Score=32.91 Aligned_cols=91 Identities=16% Similarity=0.071 Sum_probs=54.4
Q ss_pred HHHHHHHHhCCCCceE--EEEeeeccHH-HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 234 ELIYDLKCANPNARIS--VKLVSEVGVG-VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~--VKlv~~~Gi~-~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
+.|++||+.+|+.+|. +|+. .++ +.+..+.++|+|.+++-++ ||. ..+.++.++..+
T Consensus 45 ~~i~~lk~~~~~~~IflDlKl~---DIp~tv~~~~~~~Gad~~tv~~~-~g~----------------~~i~~a~~~a~~ 104 (218)
T PRK13305 45 GAVKALREQCPDKIIVADWKVA---DAGETLAQQAFGAGANWMTIICA-APL----------------ATVEKGHAVAQR 104 (218)
T ss_pred HHHHHHHHhCCCCEEEEEeecc---cChHHHHHHHHHcCCCEEEEecC-CCH----------------HHHHHHHHHHHh
Confidence 5689999998887765 4743 566 5677788999999999877 331 335556554443
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 347 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~ 347 (447)
.|..-.+.++.- .|..+.-..-.+|.+.+.+-++
T Consensus 105 ~~~~~~~~llgV---~t~~~~~~l~~~g~~~~v~h~a 138 (218)
T PRK13305 105 CGGEIQIELFGN---WTLDDARDWHRIGVRQAIYHRG 138 (218)
T ss_pred cCCcccceEEEe---cCcchHHHHHHcCCHHHHHHHH
Confidence 332112445554 2444433333577765444333
No 395
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=69.03 E-value=23 Score=35.17 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHHHhCCC-CceEEEEeeeccHHH-HHHHHHHCCCcEEEE--ecCCCCCC
Q psy10999 227 YSIEDLAELIYDLKCANPN-ARISVKLVSEVGVGV-VASGVAKGKAEHIVI--SGHDGGTG 283 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~-~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~V--sG~~GGtg 283 (447)
-++++..+++..||+..+. .||.+=.--..|.+. -+..+.++|+|.|.. .|-|+++|
T Consensus 164 ~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aG 224 (266)
T cd07944 164 MYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAG 224 (266)
T ss_pred CCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcC
Confidence 4578888999999987653 677665333345554 355678999999964 46666554
No 396
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=68.79 E-value=27 Score=33.88 Aligned_cols=84 Identities=15% Similarity=0.141 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHH---hCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHH
Q psy10999 230 EDLAELIYDLKC---ANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 306 (447)
Q Consensus 230 edl~~~I~~Lr~---~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~ 306 (447)
.++.++..+++. .+ +++++|- + ....+.+.|+|+|++...+ .+ +.++.+
T Consensus 54 ~~~~~~a~~l~~l~~~~-gv~liIN-----d---~~dlA~~~~adGVHLg~~d---------------~~----~~~~r~ 105 (221)
T PRK06512 54 ATFQKQAEKLVPVIQEA-GAAALIA-----G---DSRIAGRVKADGLHIEGNL---------------AA----LAEAIE 105 (221)
T ss_pred HHHHHHHHHHHHHHHHh-CCEEEEe-----C---HHHHHHHhCCCEEEECccc---------------cC----HHHHHH
Confidence 445455555554 33 5677666 2 3455678899999984321 12 334444
Q ss_pred HHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChH
Q psy10999 307 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 347 (447)
Q Consensus 307 ~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~ 347 (447)
.+ + .+. +|-..-..+-.++.+|..+|||.+++|-.
T Consensus 106 ~~---~--~~~-iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 106 KH---A--PKM-IVGFGNLRDRHGAMEIGELRPDYLFFGKL 140 (221)
T ss_pred hc---C--CCC-EEEecCCCCHHHHHHhhhcCCCEEEECCC
Confidence 32 1 122 33322345677788888999999999964
No 397
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=68.39 E-value=2.5 Score=39.83 Aligned_cols=35 Identities=37% Similarity=0.366 Sum_probs=27.0
Q ss_pred ceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 316 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 316 ~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
++|||+.|=|+|..||..|+..||++|.-+.+-||
T Consensus 140 ~~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW 174 (175)
T PF04309_consen 140 NIPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW 174 (175)
T ss_dssp SS-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred CCCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence 58999999999999999999999999987776554
No 398
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=68.30 E-value=68 Score=32.95 Aligned_cols=99 Identities=14% Similarity=0.021 Sum_probs=53.8
Q ss_pred HHHHHHHhCCCCceEEEEeee----ccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChH----HHHHHHHH
Q psy10999 235 LIYDLKCANPNARISVKLVSE----VGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE----LGVAETHQ 306 (447)
Q Consensus 235 ~I~~Lr~~~p~~pI~VKlv~~----~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~----~~L~ev~~ 306 (447)
....+|+..|+.|+++-+.+. .+.......+...++|++.+ +-.-.+. ....-|.... +.+..+.+
T Consensus 103 ~~~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i-~ln~~q~-----~~~p~g~~~f~~~le~i~~i~~ 176 (333)
T TIGR02151 103 TFEVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAI-HLNVLQE-----LVQPEGDRNFKGWLEKIAEICS 176 (333)
T ss_pred HHHHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEE-cCccccc-----ccCCCCCcCHHHHHHHHHHHHH
Confidence 346778777889998876431 11122333444567787776 2211110 0111122222 33444444
Q ss_pred HHHhcCCCCceEEEE--cCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 307 VLALNNLRSRVVLQA--DGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 307 ~l~~~glr~~v~via--dGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
.+ ++||++ .|.-.+..++.++...|+|++-++.
T Consensus 177 ~~-------~vPVivK~~g~g~~~~~a~~L~~aGvd~I~Vsg 211 (333)
T TIGR02151 177 QL-------SVPVIVKEVGFGISKEVAKLLADAGVSAIDVAG 211 (333)
T ss_pred hc-------CCCEEEEecCCCCCHHHHHHHHHcCCCEEEECC
Confidence 32 588887 3443566666667779999998875
No 399
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=68.24 E-value=49 Score=30.92 Aligned_cols=94 Identities=16% Similarity=0.092 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCC-hHHHHHHHHHHH
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP-WELGVAETHQVL 308 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p-~~~~L~ev~~~l 308 (447)
...+.+..|++. |..+.+- ..|.+. ....+....+|+|.++..--.. . ..-+ ....+..+.+.+
T Consensus 134 ~~~~~i~~l~~~--G~~iald---dfg~~~~~~~~l~~l~~d~iKld~~~~~~-------~--~~~~~~~~~l~~l~~~~ 199 (241)
T smart00052 134 SAVATLQRLREL--GVRIALD---DFGTGYSSLSYLKRLPVDLLKIDKSFVRD-------L--QTDPEDEAIVQSIIELA 199 (241)
T ss_pred HHHHHHHHHHHC--CCEEEEe---CCCCcHHHHHHHHhCCCCeEEECHHHHhh-------h--ccChhHHHHHHHHHHHH
Confidence 344677888776 5666665 334432 3356667889999998642110 0 0011 223344444544
Q ss_pred HhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeec
Q psy10999 309 ALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIG 343 (447)
Q Consensus 309 ~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~ 343 (447)
... .+.||+. ||-|..+...+..+|.+.++
T Consensus 200 ~~~----~~~via~-gVe~~~~~~~l~~~Gi~~~Q 229 (241)
T smart00052 200 QKL----GLQVVAE-GVETPEQLDLLRSLGCDYGQ 229 (241)
T ss_pred HHC----CCeEEEe-cCCCHHHHHHHHHcCCCEEe
Confidence 433 3667766 89999999999999999653
No 400
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=68.16 E-value=1.5e+02 Score=30.55 Aligned_cols=101 Identities=17% Similarity=0.097 Sum_probs=65.2
Q ss_pred HHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCC-----------CCCccccccccCCCChHHHHHH
Q psy10999 235 LIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGG-----------TGASSWTGIKNAGLPWELGVAE 303 (447)
Q Consensus 235 ~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GG-----------tg~a~~~~~~~~G~p~~~~L~e 303 (447)
.++.|... |+++-+=++- ....+..++++|+++|-. +=|+ ... .....|....+.+
T Consensus 140 A~~~L~~~--GI~vN~TliF---S~~Qa~aaa~AGa~~ISP--FVgRi~dw~~~~~g~~~~------~~~~d~Gv~~v~~ 206 (317)
T TIGR00874 140 AAEELEKE--GIHCNLTLLF---SFVQAIACAEAKVTLISP--FVGRILDWYKAATGKKEY------SIEEDPGVASVKK 206 (317)
T ss_pred HHHHHHHC--CCceeeeeec---CHHHHHHHHHcCCCEEEe--ecchHhHhhhhccCcccc------ccccCchHHHHHH
Confidence 44555443 4455444332 224566788999998832 2122 110 0112477788899
Q ss_pred HHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhc
Q psy10999 304 THQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMG 353 (447)
Q Consensus 304 v~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~alg 353 (447)
+.+..+.+|.. +.+....+|+..+|.. ..|+|.+-+.-.+|-.+.
T Consensus 207 i~~~~k~~g~~---T~Im~ASfRn~~qv~~--laG~d~~Ti~p~ll~~L~ 251 (317)
T TIGR00874 207 IYNYYKKHGYP---TEVMGASFRNKEEILA--LAGCDRLTISPALLDELK 251 (317)
T ss_pred HHHHHHHcCCC---cEEEeeccCCHHHHHH--HHCCCeEeCCHHHHHHHH
Confidence 99999888754 3556778999999986 569999998877776553
No 401
>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=68.14 E-value=41 Score=34.93 Aligned_cols=33 Identities=12% Similarity=-0.009 Sum_probs=23.6
Q ss_pred ceE-EEEcCCCCChHHH----HHHHHcCC--CeeccChHHH
Q psy10999 316 RVV-LQADGQIRTGFDV----VVAALLGA--DEIGLSTAPL 349 (447)
Q Consensus 316 ~v~-viadGGIrtg~Dv----~kAlaLGA--d~V~iGt~~L 349 (447)
.+| |+++||. +..++ ..|+..|| .+|.+||..-
T Consensus 241 ~~P~vvlsgG~-~~~~f~~~l~~A~~aGa~f~Gvl~GRniw 280 (340)
T PRK12858 241 DLPFIFLSAGV-SPELFRRTLEFACEAGADFSGVLCGRATW 280 (340)
T ss_pred CCCEEEECCCC-CHHHHHHHHHHHHHcCCCccchhhhHHHH
Confidence 355 4558887 55544 35788999 9999999753
No 402
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=67.43 E-value=12 Score=37.16 Aligned_cols=63 Identities=16% Similarity=0.230 Sum_probs=46.5
Q ss_pred HHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 265 VAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 265 a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
+...+||+|+++|.. ||. .|...-|..+.++. .+|+++-.|+ +...+..-+.. ||+|.+
T Consensus 173 ver~~aDaVI~tG~~--TG~----------~~d~~el~~a~~~~-------~~pvlvGSGv-~~eN~~~~l~~-adG~Iv 231 (263)
T COG0434 173 VERGLADAVIVTGSR--TGS----------PPDLEELKLAKEAV-------DTPVLVGSGV-NPENIEELLKI-ADGVIV 231 (263)
T ss_pred HHccCCCEEEEeccc--CCC----------CCCHHHHHHHHhcc-------CCCEEEecCC-CHHHHHHHHHH-cCceEE
Confidence 567899999999984 332 24555566666653 4999999997 56667666666 999999
Q ss_pred ChHH
Q psy10999 345 STAP 348 (447)
Q Consensus 345 Gt~~ 348 (447)
||.+
T Consensus 232 gT~l 235 (263)
T COG0434 232 GTSL 235 (263)
T ss_pred EEEE
Confidence 9965
No 403
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=67.34 E-value=28 Score=36.16 Aligned_cols=89 Identities=20% Similarity=0.181 Sum_probs=55.1
Q ss_pred HHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCC
Q psy10999 235 LIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLR 314 (447)
Q Consensus 235 ~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr 314 (447)
.|.++|...|.+-++-. .......|+...+.||+.|-|=--. +.++- ...-|.++.+. ++
T Consensus 121 vIAEvKrASPSkG~I~~---~~dp~~iA~~Ye~~GA~aISVLTd~-----------~~F~G-s~e~L~~vr~~----~v- 180 (338)
T PLN02460 121 LIAEVKKASPSRGVLRE---NFDPVEIAQAYEKGGAACLSVLTDE-----------KYFQG-SFENLEAIRNA----GV- 180 (338)
T ss_pred eEeeeccCCCCCCccCC---CCCHHHHHHHHHhCCCcEEEEecCc-----------CcCCC-CHHHHHHHHHc----CC-
Confidence 34455555544322211 2234567778889999999663211 01111 12345566554 11
Q ss_pred CceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 315 SRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 315 ~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
.+||+.-==|-++.+|..|-++|||+|.+
T Consensus 181 -~lPvLrKDFIID~yQI~eAr~~GADAVLL 209 (338)
T PLN02460 181 -KCPLLCKEFIVDAWQIYYARSKGADAILL 209 (338)
T ss_pred -CCCEeeccccCCHHHHHHHHHcCCCcHHH
Confidence 58999988899999999999999999843
No 404
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=67.09 E-value=1.3e+02 Score=30.75 Aligned_cols=105 Identities=9% Similarity=0.063 Sum_probs=58.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEE--EEee--eccHHH---HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChH
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISV--KLVS--EVGVGV---VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE 298 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~V--Klv~--~~Gi~~---~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~ 298 (447)
+.+.+++.+.|+..++.-...++.| ..=+ ..|+.+ -++...++|||.|-+.|. .+.
T Consensus 128 lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAGAD~ifi~~~-----------------~~~ 190 (294)
T TIGR02319 128 LISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAGADCIFLEAM-----------------LDV 190 (294)
T ss_pred ccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhCCCEEEecCC-----------------CCH
Confidence 4566777777777776532222322 2111 124432 234457899999999642 122
Q ss_pred HHHHHHHHHHHhcCCCCceEE-EEcCCCCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 299 LGVAETHQVLALNNLRSRVVL-QADGQIRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~v-iadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
.-+.++.+.+ ...++. +..||-.--..+...-.||.+.|.++...+.+.
T Consensus 191 ~ei~~~~~~~-----~~P~~~nv~~~~~~p~~s~~eL~~lG~~~v~~~~~~~~aa 240 (294)
T TIGR02319 191 EEMKRVRDEI-----DAPLLANMVEGGKTPWLTTKELESIGYNLAIYPLSGWMAA 240 (294)
T ss_pred HHHHHHHHhc-----CCCeeEEEEecCCCCCCCHHHHHHcCCcEEEEcHHHHHHH
Confidence 3355555543 112311 444543222446666778999999998877664
No 405
>KOG0399|consensus
Probab=66.62 E-value=23 Score=42.41 Aligned_cols=131 Identities=18% Similarity=0.126 Sum_probs=87.1
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCC-CCChHHHHHHHHcCC
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQ-IRTGFDVVVAALLGA 339 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGG-Irtg~Dv~kAlaLGA 339 (447)
.|..|++-|-.++++|-..-+. ....+|.+.++-.+|+.|..+++|-++.|+++.| -|.--+..--+-.||
T Consensus 683 ~A~eAv~~G~qiLVLSDR~~~~--------eRv~i~sllAvgaVHhhLIqn~lR~~valV~et~e~revHhfc~LlGyGa 754 (2142)
T KOG0399|consen 683 EADEAVRDGYQILVLSDRNDSA--------ERVPIPSLLAVGAVHHHLIQNKLRMQVALVVETGEAREVHHFCVLLGYGA 754 (2142)
T ss_pred HHHHHHhccceEEEEecccCCc--------ccCChHHHHHHhHHHHHHHHhhhhceEEEEEecCcceeeeeeeeeeccCc
Confidence 3556778899999998764332 3467889999999999999999999999999665 444455666677899
Q ss_pred CeeccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCCcHHHHHHHHHHHHHHHHHHHhhhCCCCCCcc
Q psy10999 340 DEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDFPL 413 (447)
Q Consensus 340 d~V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~g~~~V~~~l~~l~~Elr~~M~l~~~G~~s~~ 413 (447)
|+|. |+|+--.|...+.-.....--+.- +...++-+.||-..+...|-..|.. ||++.+.
T Consensus 755 daic---PyLa~Et~~RL~~~~~~~~~nn~~---------t~t~eq~~knY~kavn~GilKVmsK--MGIStl~ 814 (2142)
T KOG0399|consen 755 DAIC---PYLAMETLWRLSNKGLLDPRNNGP---------TVTEEQAQKNYRKAVNAGILKVMSK--MGISTLA 814 (2142)
T ss_pred cccc---hHHHHHHHHHHHhccccccccCCC---------cccHHHHHHHHHHHhhhhHHHHHHH--hChHHHh
Confidence 9984 565544432211110000000000 0113566788888888899999999 9987643
No 406
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=66.13 E-value=1.1e+02 Score=31.74 Aligned_cols=95 Identities=11% Similarity=0.007 Sum_probs=57.6
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.++.+++.-++.++.+=+.+..+...+.+.+.++|+|.|.|.-| .+ ....+.+..+..++.|+
T Consensus 66 e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~-----~~-----------e~~~~~~~i~~ak~~G~ 129 (337)
T PRK08195 66 EYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATH-----CT-----------EADVSEQHIGLARELGM 129 (337)
T ss_pred HHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEe-----cc-----------hHHHHHHHHHHHHHCCC
Confidence 356666655456666655444334446778889999999988643 11 12345666677777776
Q ss_pred CCceEEEEcCCCCChHHHH----HHHHcCCCeeccC
Q psy10999 314 RSRVVLQADGQIRTGFDVV----VAALLGADEIGLS 345 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~----kAlaLGAd~V~iG 345 (447)
.-.+.+. +....+...++ ++...||+.+.+.
T Consensus 130 ~v~~~l~-~a~~~~~e~l~~~a~~~~~~Ga~~i~i~ 164 (337)
T PRK08195 130 DTVGFLM-MSHMAPPEKLAEQAKLMESYGAQCVYVV 164 (337)
T ss_pred eEEEEEE-eccCCCHHHHHHHHHHHHhCCCCEEEeC
Confidence 5434343 44556666554 3456798876543
No 407
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=65.41 E-value=1.3e+02 Score=29.69 Aligned_cols=110 Identities=13% Similarity=0.089 Sum_probs=59.6
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeee--ccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSE--VGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETH 305 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~--~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~ 305 (447)
+++.|.+.|...+...++.|+++=+... ......++.+.++|+|+|.+.-..-.+... .... -....+.++.
T Consensus 81 g~~~~~~~i~~~~~~~~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~-----~~~~-~~~~~~~eiv 154 (289)
T cd02810 81 GLDVWLQDIAKAKKEFPGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGG-----RQLG-QDPEAVANLL 154 (289)
T ss_pred CHHHHHHHHHHHHhccCCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCC-----cccc-cCHHHHHHHH
Confidence 3566766777666543467888876531 122345667788899999885321111000 0011 1224455555
Q ss_pred HHHHhcCCCCceEEEE--cCCCC--ChHHHHH-HHHcCCCeeccCh
Q psy10999 306 QVLALNNLRSRVVLQA--DGQIR--TGFDVVV-AALLGADEIGLST 346 (447)
Q Consensus 306 ~~l~~~glr~~v~via--dGGIr--tg~Dv~k-AlaLGAd~V~iGt 346 (447)
+.+++. + ++||++ .+++. ...++++ +...|||++.+..
T Consensus 155 ~~vr~~-~--~~pv~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 155 KAVKAA-V--DIPLLVKLSPYFDLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHc-c--CCCEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEc
Confidence 555432 1 466665 45543 2345555 4458999998743
No 408
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=65.01 E-value=93 Score=31.29 Aligned_cols=112 Identities=16% Similarity=0.094 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeeecc---HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCC---ChHHHHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSEVG---VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGL---PWELGVA 302 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~~G---i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~---p~~~~L~ 302 (447)
++.|.+.+.+++...++.|+++=+..... ....|+.+.+.|+|+|.+- .+- -+. ...+..|. -....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN-~sC-P~~---~~~~~~G~~l~~~~~~~~ 157 (299)
T cd02940 83 LEYWLKEIRELKKDFPDKILIASIMCEYNKEDWTELAKLVEEAGADALELN-FSC-PHG---MPERGMGAAVGQDPELVE 157 (299)
T ss_pred HHHHHHHHHHHHhhCCCCeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEE-CCC-CCC---CCCCCCchhhccCHHHHH
Confidence 45566677777766556688776543211 1234556677899999883 210 000 00011111 1235566
Q ss_pred HHHHHHHhcCCCCceEEEEc--CCCCChHHHHH-HHHcCCCeeccChHH
Q psy10999 303 ETHQVLALNNLRSRVVLQAD--GQIRTGFDVVV-AALLGADEIGLSTAP 348 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viad--GGIrtg~Dv~k-AlaLGAd~V~iGt~~ 348 (447)
++.+.+++. -++||++= -.+.+-.++++ +...|||++.+...+
T Consensus 158 ~iv~~v~~~---~~~Pv~vKl~~~~~~~~~~a~~~~~~Gadgi~~~Nt~ 203 (299)
T cd02940 158 EICRWVREA---VKIPVIAKLTPNITDIREIARAAKEGGADGVSAINTV 203 (299)
T ss_pred HHHHHHHHh---cCCCeEEECCCCchhHHHHHHHHHHcCCCEEEEeccc
Confidence 666666542 14777763 22333446666 567899999765443
No 409
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=64.39 E-value=27 Score=34.68 Aligned_cols=75 Identities=16% Similarity=0.224 Sum_probs=48.5
Q ss_pred HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc-CCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 260 VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN-NLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 260 ~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~-glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
.+|.++.+.|+|+|+|+|+ |-+ | +.++.+..+..++..+.+.+... ++--.|-|+--..+. -+..|.+-|
T Consensus 38 ~dA~~leegG~DavivEN~-gD~---P--f~k~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~va---A~~IA~a~g 108 (263)
T COG0434 38 RDAAALEEGGVDAVIVENY-GDA---P--FLKDVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVA---ALAIAYAVG 108 (263)
T ss_pred HHHHHHHhCCCcEEEEecc-CCC---C--CCCCCChHHHHHHHHHHHHHHHhccccceeeeeccccHH---HHHHHHhcC
Confidence 5788999999999999999 433 2 34578888999998888766432 111112233323322 244566679
Q ss_pred CCeec
Q psy10999 339 ADEIG 343 (447)
Q Consensus 339 Ad~V~ 343 (447)
|+++=
T Consensus 109 A~FIR 113 (263)
T COG0434 109 ADFIR 113 (263)
T ss_pred CCEEE
Confidence 99763
No 410
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=63.38 E-value=30 Score=32.00 Aligned_cols=98 Identities=20% Similarity=0.182 Sum_probs=58.1
Q ss_pred HHHHHHHHHHH---HhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHH
Q psy10999 230 EDLAELIYDLK---CANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 306 (447)
Q Consensus 230 edl~~~I~~Lr---~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~ 306 (447)
+++.+.+++++ ..+ +++++|- .....+.+.|+|+|.+...+ ++ ..++.+
T Consensus 39 ~~~~~~a~~l~~~~~~~-~~~liin--------~~~~la~~~~~dGvHl~~~~---------------~~----~~~~r~ 90 (180)
T PF02581_consen 39 EELLELARRLAELCQKY-GVPLIIN--------DRVDLALELGADGVHLGQSD---------------LP----PAEARK 90 (180)
T ss_dssp HHHHHHHHHHHHHHHHT-TGCEEEE--------S-HHHHHHCT-SEEEEBTTS---------------SS----HHHHHH
T ss_pred cHHHHHHHHHHHHhhcc-eEEEEec--------CCHHHHHhcCCCEEEecccc---------------cc----hHHhhh
Confidence 34444444444 333 5677666 24556778999999996531 12 234444
Q ss_pred HHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcccchhcccCCCCccccc
Q psy10999 307 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIA 370 (447)
Q Consensus 307 ~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc~~~~~c~~~~cP~gia 370 (447)
.+. .. .++.-...+..++.+|..+|||.|.+|..|-. .|+++..|.|+.
T Consensus 91 ~~~-----~~--~~ig~S~h~~~e~~~a~~~g~dYv~~gpvf~T--------~sk~~~~~~g~~ 139 (180)
T PF02581_consen 91 LLG-----PD--KIIGASCHSLEEAREAEELGADYVFLGPVFPT--------SSKPGAPPLGLD 139 (180)
T ss_dssp HHT-----TT--SEEEEEESSHHHHHHHHHCTTSEEEEETSS----------SSSSS-TTCHHH
T ss_pred hcc-----cc--eEEEeecCcHHHHHHhhhcCCCEEEECCccCC--------CCCccccccCHH
Confidence 332 12 24455588999999999999999999976532 355555454444
No 411
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=62.89 E-value=1e+02 Score=32.24 Aligned_cols=29 Identities=31% Similarity=0.227 Sum_probs=25.8
Q ss_pred ceEEEEcCCCCChHHHHHHHHcCCCeeccC
Q psy10999 316 RVVLQADGQIRTGFDVVVAALLGADEIGLS 345 (447)
Q Consensus 316 ~v~viadGGIrtg~Dv~kAlaLGAd~V~iG 345 (447)
++||++= |+.++.|+.++...|||++.+.
T Consensus 221 ~~PvivK-gv~~~~dA~~a~~~G~d~I~vs 249 (351)
T cd04737 221 GLPVIVK-GIQSPEDADVAINAGADGIWVS 249 (351)
T ss_pred CCcEEEe-cCCCHHHHHHHHHcCCCEEEEe
Confidence 5899987 4899999999999999999884
No 412
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=62.28 E-value=32 Score=35.85 Aligned_cols=81 Identities=20% Similarity=0.156 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 233 AELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 233 ~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
+..+..+.+.+ +++++|- +....+.+.|+|+|++... + +| +.++.+.+ |
T Consensus 190 a~~L~~l~~~~-~~~lIIN--------D~vdlAl~~~aDGVHLgq~-------------d--l~----~~~aR~ll---g 238 (347)
T PRK02615 190 AKKLKELCHRY-GALFIVN--------DRVDIALAVDADGVHLGQE-------------D--LP----LAVARQLL---G 238 (347)
T ss_pred HHHHHHHHHHh-CCeEEEe--------ChHHHHHHcCCCEEEeChh-------------h--cC----HHHHHHhc---C
Confidence 34444444444 5566665 3345567899999988321 1 23 22333322 1
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
.+ .++.....|..++.+|...|||.|++|..|
T Consensus 239 --~~--~iIG~S~Hs~~e~~~A~~~GaDYI~lGPvf 270 (347)
T PRK02615 239 --PE--KIIGRSTTNPEEMAKAIAEGADYIGVGPVF 270 (347)
T ss_pred --CC--CEEEEecCCHHHHHHHHHcCCCEEEECCCc
Confidence 12 245555679999999999999999999544
No 413
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=61.99 E-value=1.8e+02 Score=29.49 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=69.7
Q ss_pred HHHCCCcEEEEecCCCCCCCccccccccCCCC--hHHHHHHHHHHHHhcCCCCceEEEEcCCCCCh-HHHHHHHHcCCCe
Q psy10999 265 VAKGKAEHIVISGHDGGTGASSWTGIKNAGLP--WELGVAETHQVLALNNLRSRVVLQADGQIRTG-FDVVVAALLGADE 341 (447)
Q Consensus 265 a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p--~~~~L~ev~~~l~~~glr~~v~viadGGIrtg-~Dv~kAlaLGAd~ 341 (447)
+.+.|+|.+-|+= |..|.. ..+.| ....|.++++.+ ++||..-||=..+ .|+.||+.+|..-
T Consensus 165 v~~TgvD~LAvai--Gt~HG~------Y~~~p~L~~~~L~~I~~~~-------~iPLVLHGgSG~~~e~~~~ai~~Gi~K 229 (285)
T PRK07709 165 VEATGIDCLAPAL--GSVHGP------YKGEPNLGFAEMEQVRDFT-------GVPLVLHGGTGIPTADIEKAISLGTSK 229 (285)
T ss_pred HHHhCCCEEEEee--cccccC------cCCCCccCHHHHHHHHHHH-------CCCEEEeCCCCCCHHHHHHHHHcCCeE
Confidence 4568999998864 222221 11222 235677777654 5999999998888 6677899999999
Q ss_pred eccChHHHHHhcccchhcccCCCCcccccccCHHHHhhcCC------cHHHHHHHHHHHHHHHHHHHhhhCCCCC
Q psy10999 342 IGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG------KPEHVINYLFMLAEEVSRDYRAESPGFD 410 (447)
Q Consensus 342 V~iGt~~L~algc~~~~~c~~~~cP~giat~~~~l~~~~~~------g~~~V~~~l~~l~~Elr~~M~l~~~G~~ 410 (447)
|-++|-+..+..... ++.+.. -..-.....+.+.+.+++.|.+ +|+.
T Consensus 230 iNi~T~l~~a~~~~~--------------------~~~~~~~~~~~d~~~~~~~~~~a~~~~v~~~i~~--~gs~ 282 (285)
T PRK07709 230 INVNTENQIEFTKAV--------------------REVLNKDQEVYDPRKFIGPGRDAIKATVIGKIRE--FGSN 282 (285)
T ss_pred EEeChHHHHHHHHHH--------------------HHHHHhCCCcCCHHHHHHHHHHHHHHHHHHHHHH--hCCC
Confidence 999998766542221 111110 0123344566777888888888 7754
No 414
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=61.87 E-value=95 Score=28.72 Aligned_cols=89 Identities=17% Similarity=0.105 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.+++|++.. +.++.|.+... ........+.++|+|+|+|-+. -+ ....+..+.+.+.+
T Consensus 47 ~~~~~i~~~~-~~~~~v~l~~~-d~~~~~~~~~~~g~dgv~vh~~--~~----------------~~~~~~~~~~~~~~- 105 (211)
T cd00429 47 PVVKALRKHT-DLPLDVHLMVE-NPERYIEAFAKAGADIITFHAE--AT----------------DHLHRTIQLIKELG- 105 (211)
T ss_pred HHHHHHHhhC-CCcEEEEeeeC-CHHHHHHHHHHcCCCEEEECcc--ch----------------hhHHHHHHHHHHCC-
Confidence 4677888765 44665554432 3445667778999999988442 10 01122233344333
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
+.+..+-.-.+..+.++++..++|.+++++
T Consensus 106 ---~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~ 135 (211)
T cd00429 106 ---MKAGVALNPGTPVEVLEPYLDEVDLVLVMS 135 (211)
T ss_pred ---CeEEEEecCCCCHHHHHHHHhhCCEEEEEE
Confidence 444444445566777888888899998775
No 415
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=61.61 E-value=99 Score=31.17 Aligned_cols=104 Identities=13% Similarity=0.115 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHH---HHH
Q psy10999 229 IEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA---ETH 305 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~---ev~ 305 (447)
.+.+...+..+.+....+||.+.+-... .......+.+.|++.|.+++.. +|..+-+. ++.
T Consensus 58 ~~~~~~~~~~~a~~~~~vpv~lhlDH~~-~~e~i~~ai~~Gf~sVmid~s~---------------l~~~eni~~t~~v~ 121 (282)
T TIGR01859 58 YKMAVAMVKTLIERMSIVPVALHLDHGS-SYESCIKAIKAGFSSVMIDGSH---------------LPFEENLALTKKVV 121 (282)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEECCCCC-CHHHHHHHHHcCCCEEEECCCC---------------CCHHHHHHHHHHHH
Confidence 5667788888877763279999875421 2345677889999999998762 24444443 344
Q ss_pred HHHHhcCCCCceEEEEc-----------CCCCChHHHHHHHH-cCCCeec--cChHH
Q psy10999 306 QVLALNNLRSRVVLQAD-----------GQIRTGFDVVVAAL-LGADEIG--LSTAP 348 (447)
Q Consensus 306 ~~l~~~glr~~v~viad-----------GGIrtg~Dv~kAla-LGAd~V~--iGt~~ 348 (447)
+.+...|+.-...|=.. ....++.++.++.. .|+|.+. +|+..
T Consensus 122 ~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~h 178 (282)
T TIGR01859 122 EIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSH 178 (282)
T ss_pred HHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccc
Confidence 44455553211111112 22558899999996 9999887 66643
No 416
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=61.40 E-value=1.6e+02 Score=28.37 Aligned_cols=106 Identities=18% Similarity=0.093 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCCh---HHHHHHHHHHH
Q psy10999 232 LAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW---ELGVAETHQVL 308 (447)
Q Consensus 232 l~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~---~~~L~ev~~~l 308 (447)
..+.++.+++..++.++.+ ++ . ....+++.+.++|+|.|.++-..--++. ....+... ...+.++.+.+
T Consensus 53 ~~~~i~~l~~~~~~~~~~~-l~-~-~~~~~i~~a~~~g~~~i~i~~~~s~~~~-----~~~~~~~~~~~~~~~~~~i~~a 124 (265)
T cd03174 53 DWEVLRAIRKLVPNVKLQA-LV-R-NREKGIERALEAGVDEVRIFDSASETHS-----RKNLNKSREEDLENAEEAIEAA 124 (265)
T ss_pred HHHHHHHHHhccCCcEEEE-Ec-c-CchhhHHHHHhCCcCEEEEEEecCHHHH-----HHHhCCCHHHHHHHHHHHHHHH
Confidence 4467888888755444322 11 1 2256788899999999998875221111 11112222 23344455566
Q ss_pred HhcCCCCceEEEEcCC-CCChHHHH----HHHHcCCCeeccC
Q psy10999 309 ALNNLRSRVVLQADGQ-IRTGFDVV----VAALLGADEIGLS 345 (447)
Q Consensus 309 ~~~glr~~v~viadGG-Irtg~Dv~----kAlaLGAd~V~iG 345 (447)
++.|+.-.+-+....+ ..+..++. ++..+||+.+.+.
T Consensus 125 ~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~ 166 (265)
T cd03174 125 KEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK 166 (265)
T ss_pred HHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec
Confidence 6777543333332332 34555543 4667899887664
No 417
>PRK08227 autoinducer 2 aldolase; Validated
Probab=61.21 E-value=29 Score=34.77 Aligned_cols=90 Identities=12% Similarity=0.025 Sum_probs=54.6
Q ss_pred hCCCCceEEEEeeeccH---------HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 242 ANPNARISVKLVSEVGV---------GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 242 ~~p~~pI~VKlv~~~Gi---------~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
...++|+++|+-+...+ ....+.|.+.|||+|-+.=.=|... . .-.+.-|.++.+.+.++|
T Consensus 71 ~~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGAdAV~~~v~~Gs~~-------E---~~~l~~l~~v~~ea~~~G 140 (264)
T PRK08227 71 PATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNACAVAAQVFIGSEY-------E---HQSIKNIIQLVDAGLRYG 140 (264)
T ss_pred ccCCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCCCEEEEEEecCCHH-------H---HHHHHHHHHHHHHHHHhC
Confidence 34567899997652211 1245678899999998876645321 0 123344666777777666
Q ss_pred CCCceEEEE---cC-CCCChHHH-----HHHHHcCCCeeccC
Q psy10999 313 LRSRVVLQA---DG-QIRTGFDV-----VVAALLGADEIGLS 345 (447)
Q Consensus 313 lr~~v~via---dG-GIrtg~Dv-----~kAlaLGAd~V~iG 345 (447)
+||++ -| .+.+..|+ -.|..||||.|=.-
T Consensus 141 ----~Plla~~prG~~~~~~~~~ia~aaRiaaELGADiVK~~ 178 (264)
T PRK08227 141 ----MPVMAVTAVGKDMVRDARYFSLATRIAAEMGAQIIKTY 178 (264)
T ss_pred ----CcEEEEecCCCCcCchHHHHHHHHHHHHHHcCCEEecC
Confidence 66666 22 24555553 35778999987543
No 418
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=60.92 E-value=49 Score=30.61 Aligned_cols=83 Identities=18% Similarity=0.098 Sum_probs=51.0
Q ss_pred HHHHHHHHHHH---hCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHH
Q psy10999 231 DLAELIYDLKC---ANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQV 307 (447)
Q Consensus 231 dl~~~I~~Lr~---~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~ 307 (447)
++.+.+.+++. .+ +.++++. .....+.+.|+|+|++.... ++. ..+...
T Consensus 41 ~~~~~~~~l~~~~~~~-~~~l~i~--------~~~~la~~~g~~GvHl~~~~---------------~~~----~~~r~~ 92 (196)
T TIGR00693 41 ERLALAEKLQELCRRY-GVPFIVN--------DRVDLALALGADGVHLGQDD---------------LPA----SEARAL 92 (196)
T ss_pred HHHHHHHHHHHHHHHh-CCeEEEE--------CHHHHHHHcCCCEEecCccc---------------CCH----HHHHHh
Confidence 34445555443 33 4566665 23456778999999884210 111 122222
Q ss_pred HHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 308 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 308 l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
+ ... .++...+.|..++.+|..+|||.+.+|..|
T Consensus 93 ~-----~~~--~~ig~s~h~~~e~~~a~~~g~dyi~~~~v~ 126 (196)
T TIGR00693 93 L-----GPD--KIIGVSTHNLEELAEAEAEGADYIGFGPIF 126 (196)
T ss_pred c-----CCC--CEEEEeCCCHHHHHHHhHcCCCEEEECCcc
Confidence 2 112 355667899999999999999999998643
No 419
>KOG2333|consensus
Probab=60.90 E-value=46 Score=36.30 Aligned_cols=106 Identities=17% Similarity=0.170 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHHH---HH----HHHH-HCCCcEEEEecCCCCCCCccccccccCCCChHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVGV---VA----SGVA-KGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGV 301 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~---~A----~~a~-~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L 301 (447)
.-+.+.++....+....||-||+=. |+-. .| ..+. +-|+++|++-|..-- +...-....+-+
T Consensus 375 ~rl~~~l~~m~~vs~~iPiTVKiRT--G~keg~~~a~~Li~~i~newg~savTlHGRSRq--------QRYTK~AnWdYi 444 (614)
T KOG2333|consen 375 ARLIRILRAMNAVSGDIPITVKIRT--GTKEGHPVAHELIPRIVNEWGASAVTLHGRSRQ--------QRYTKSANWDYI 444 (614)
T ss_pred HHHHHHHHHHHHhccCCCeEEEEec--ccccCchhHHHHHHHHhhccCcceEEecCchhh--------hhhhcccChHHH
Confidence 3455566666667777799999765 3321 12 1233 789999999654211 223333334557
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC--CCeeccChHHHH
Q psy10999 302 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG--ADEIGLSTAPLI 350 (447)
Q Consensus 302 ~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG--Ad~V~iGt~~L~ 350 (447)
.++.+.+ +..+|||.-|-|-+=.|-.+-+..+ .+.|+|||..|+
T Consensus 445 ~e~a~~a-----k~~l~liGNGDi~S~eDw~~~~~~~p~v~svMIaRGALI 490 (614)
T KOG2333|consen 445 EECADKA-----KSALPLIGNGDILSWEDWYERLNQNPNVDSVMIARGALI 490 (614)
T ss_pred HHHHHhc-----ccCceeEecCccccHHHHHHHhhcCCCcceEEeeccccc
Confidence 7777764 3459999999999999999888888 799999998775
No 420
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=60.82 E-value=20 Score=40.01 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=45.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHH-HHHHHHCCCcEEE--EecCCCCCCCccc
Q psy10999 225 DIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVV-ASGVAKGKAEHIV--ISGHDGGTGASSW 287 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~-A~~a~~aGaD~I~--VsG~~GGtg~a~~ 287 (447)
..-.+++..++|..||+.+ ++||.+=.-...|.+.. ...+.++|||.|+ ++|.++|+|.++.
T Consensus 179 G~l~P~~~~~lv~~lk~~~-~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~l 243 (593)
T PRK14040 179 GLLKPYAAYELVSRIKKRV-DVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSAT 243 (593)
T ss_pred CCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccccccccchhH
Confidence 3446778889999999987 57887764444566653 4568899999995 5688888876653
No 421
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=60.12 E-value=46 Score=36.10 Aligned_cols=58 Identities=16% Similarity=0.126 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEe--cCCCCCC
Q psy10999 225 DIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVIS--GHDGGTG 283 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~Vs--G~~GGtg 283 (447)
..-++....++|..||+..+ +||.+=.--..|.+. -+..|.++|||.|+.+ |.++|+|
T Consensus 177 G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~gag 237 (467)
T PRK14041 177 GLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSMGTS 237 (467)
T ss_pred CCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCCCCC
Confidence 34467788899999999875 788765433456664 3456789999999654 5555543
No 422
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=59.89 E-value=1.2e+02 Score=31.88 Aligned_cols=30 Identities=17% Similarity=0.024 Sum_probs=26.3
Q ss_pred ceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 316 RVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 316 ~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
++||++= ||-+..|+.++...|+|+|.++.
T Consensus 228 ~~PvivK-Gv~~~eda~~a~~~Gvd~I~VS~ 257 (367)
T TIGR02708 228 GLPVYVK-GPQCPEDADRALKAGASGIWVTN 257 (367)
T ss_pred CCCEEEe-CCCCHHHHHHHHHcCcCEEEECC
Confidence 5899977 69999999999999999987664
No 423
>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds. Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).
Probab=59.56 E-value=20 Score=35.31 Aligned_cols=79 Identities=14% Similarity=0.028 Sum_probs=49.8
Q ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCccccccccC-CCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCCh---HH----
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNA-GLPWELGVAETHQVLALNNLRSRVVLQADGQIRTG---FD---- 330 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~-G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg---~D---- 330 (447)
...|+.+.++|+|.|-++++.+..... ..|. .++..+.+..+....+. . ..+||++|.=--++ .+
T Consensus 22 ~~sA~i~e~aG~dai~v~~s~~a~~~G----~pD~~~vtl~em~~~~~~I~r~--~-~~~pviaD~~~G~g~~~~~~~~~ 94 (240)
T cd06556 22 YSMAKQFADAGLNVMLVGDSQGMTVAG----YDDTLPYPVNDVPYHVRAVRRG--A-PLALIVADLPFGAYGAPTAAFEL 94 (240)
T ss_pred HHHHHHHHHcCCCEEEEChHHHHHhcC----CCCCCCcCHHHHHHHHHHHHhh--C-CCCCEEEeCCCCCCcCHHHHHHH
Confidence 456788899999999999874432111 2233 34555666555544321 1 24799997544433 45
Q ss_pred HHHHHHcCCCeecc
Q psy10999 331 VVVAALLGADEIGL 344 (447)
Q Consensus 331 v~kAlaLGAd~V~i 344 (447)
+.+.+..||++|-+
T Consensus 95 ~~~l~~aGa~gv~i 108 (240)
T cd06556 95 AKTFMRAGAAGVKI 108 (240)
T ss_pred HHHHHHcCCcEEEE
Confidence 45677799999988
No 424
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=59.26 E-value=48 Score=34.51 Aligned_cols=58 Identities=24% Similarity=0.302 Sum_probs=40.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEE--EecCCCCCCCc
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIV--ISGHDGGTGAS 285 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~--VsG~~GGtg~a 285 (447)
-.++++.++|..|++..+ +||.+-.--..|.+. -+..+.++|+|.|. +.|-|+++|.+
T Consensus 167 ~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGeraGN~ 227 (363)
T TIGR02090 167 LTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGERAGNA 227 (363)
T ss_pred cCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeeccccccccc
Confidence 457788899999998765 677666433456664 34567899999995 55777766544
No 425
>PRK14725 pyruvate kinase; Provisional
Probab=59.20 E-value=1e+02 Score=34.60 Aligned_cols=101 Identities=16% Similarity=0.122 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHHHhC-CCCceEEEEeeeccHH---HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHH
Q psy10999 227 YSIEDLAELIYDLKCAN-PNARISVKLVSEVGVG---VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 302 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~-p~~pI~VKlv~~~Gi~---~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ 302 (447)
.+.+|+.++-..|.+.. ...+|+.|+=...|+. .+...+...-.|+|.|.=.+= ..-+|. +-|+
T Consensus 454 rs~~DV~~lr~~L~~~g~~~~~IiaKIEt~~av~nL~eIl~~am~~~~DGIMIARGDL-----------gvEi~~-e~lp 521 (608)
T PRK14725 454 RSPEDVRLLLDALEKLGADDLGVVLKIETRRAFENLPRILLEAMRHPRFGVMIARGDL-----------AVEVGF-ERLA 521 (608)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHHhhccCCCcEEEEECCcc-----------ccccCH-HHHH
Confidence 46666644444444432 2578999964433443 233334445689999952211 112333 3345
Q ss_pred HHHH----HHHhcCCCCceEEEEcCCCCCh------------HHHHHHHHcCCCeeccC
Q psy10999 303 ETHQ----VLALNNLRSRVVLQADGQIRTG------------FDVVVAALLGADEIGLS 345 (447)
Q Consensus 303 ev~~----~l~~~glr~~v~viadGGIrtg------------~Dv~kAlaLGAd~V~iG 345 (447)
++++ .+..+ ..|||.+..+-.. .||+-|. |||+|++.
T Consensus 522 ~iQk~Ii~~c~~~----~kPVI~ATQmLESM~~~p~PTRAEvtDVAnAv--gaD~VMLS 574 (608)
T PRK14725 522 EVQEEILWLCEAA----HVPVIWATQVLESLAKKGLPSRAEITDAAMAL--RAECVMLN 574 (608)
T ss_pred HHHHHHHHHHHHc----CCCEEEEcchHhhhccCCCCCchhHHHHHhhh--cCCEEeec
Confidence 4444 44443 4888887765433 5888777 99999886
No 426
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=58.85 E-value=24 Score=38.05 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEe--cCCCCCC
Q psy10999 225 DIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVIS--GHDGGTG 283 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~Vs--G~~GGtg 283 (447)
..-++.+..++|..||+..+ +||.+=.--..|.+. -+..|.++|||.|+.+ |.++|+|
T Consensus 178 G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~gaG 238 (448)
T PRK12331 178 GILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAGGTS 238 (448)
T ss_pred CCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCCCcC
Confidence 34457788899999999874 788775433456654 3456889999999754 5555543
No 427
>PRK09136 5'-methylthioadenosine phosphorylase; Validated
Probab=58.82 E-value=1.3e+02 Score=29.74 Aligned_cols=52 Identities=13% Similarity=0.129 Sum_probs=34.5
Q ss_pred HHHHHHHHHhcCCCC--ceEEEEcCC--CCChHHHHHHHHcCCCeeccChHHHHHh
Q psy10999 301 VAETHQVLALNNLRS--RVVLQADGQ--IRTGFDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 301 L~ev~~~l~~~glr~--~v~viadGG--Irtg~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
...+.+.+.+.|++- +-.+....| +.|...+...-.+|||.|+|.+.....+
T Consensus 136 ~~~~~~~a~~~~~~~~~~Gvy~~~~GP~feT~AE~r~lr~~Gad~VgMs~~pEa~~ 191 (245)
T PRK09136 136 RQRLLAAARAAGVSLVDGGVYAATQGPRLETAAEIARLERDGCDLVGMTGMPEAAL 191 (245)
T ss_pred HHHHHHHHHHcCCcEEeccEEEEeeCCCcCCHHHHHHHHHcCCCEEcCcHHHHHHH
Confidence 334555555555441 122334455 8899999877789999999999875543
No 428
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=58.45 E-value=2.1e+02 Score=29.14 Aligned_cols=102 Identities=15% Similarity=0.078 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEE--EEee--eccHHH---HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChH
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISV--KLVS--EVGVGV---VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE 298 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~V--Klv~--~~Gi~~---~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~ 298 (447)
+.+.+++.+.|+..++.-.+.++.| ..=+ ..|+.+ -++...++|||.|-+.|. .++
T Consensus 129 lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAGAD~ifi~~~-----------------~~~ 191 (292)
T PRK11320 129 IVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAGADMIFPEAM-----------------TEL 191 (292)
T ss_pred ccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcCCCEEEecCC-----------------CCH
Confidence 4566777778887776533333332 2111 124432 234567899999999653 123
Q ss_pred HHHHHHHHHHHhcCCCCceEE---EEcCCCCCh-HHHHHHHHcCCCeeccChHHHHHh
Q psy10999 299 LGVAETHQVLALNNLRSRVVL---QADGQIRTG-FDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~v---iadGGIrtg-~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
.-+.++.+.+ ++|| +..+|- ++ .++...-.||...|.+|...+.+.
T Consensus 192 ~~i~~~~~~~-------~~Pl~~n~~~~~~-~p~~s~~~L~~lGv~~v~~~~~~~~aa 241 (292)
T PRK11320 192 EMYRRFADAV-------KVPILANITEFGA-TPLFTTEELASAGVAMVLYPLSAFRAM 241 (292)
T ss_pred HHHHHHHHhc-------CCCEEEEeccCCC-CCCCCHHHHHHcCCcEEEEChHHHHHH
Confidence 3344444433 3555 334542 22 245566778999999998776554
No 429
>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase. A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.
Probab=58.40 E-value=1.7e+02 Score=29.54 Aligned_cols=108 Identities=13% Similarity=0.040 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH------HHHHHHHCCCcEEEEe--------cCCCCCCCccccccc
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV------VASGVAKGKAEHIVIS--------GHDGGTGASSWTGIK 291 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~------~A~~a~~aGaD~I~Vs--------G~~GGtg~a~~~~~~ 291 (447)
+-+.+++.+.++.+.... ..||++-. +.| +. ..+.+.++|+.+|.|. ||-|+.+-.
T Consensus 60 ~~~~~e~~~~~~~I~~a~-~~Pv~~D~--d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~------ 129 (285)
T TIGR02320 60 EASWTQRLDVVEFMFDVT-TKPIILDG--DTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQ------ 129 (285)
T ss_pred cCCHHHHHHHHHHHHhhc-CCCEEEec--CCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcc------
Confidence 345566666677766654 57887764 334 32 2345778999999993 222222111
Q ss_pred cCCCChHHHHHHHHHHHHhcCCCCceEEEEc-----C--CCCChHHH-HHHHHcCCCeeccC
Q psy10999 292 NAGLPWELGVAETHQVLALNNLRSRVVLQAD-----G--QIRTGFDV-VVAALLGADEIGLS 345 (447)
Q Consensus 292 ~~G~p~~~~L~ev~~~l~~~glr~~v~viad-----G--GIrtg~Dv-~kAlaLGAd~V~iG 345 (447)
.-+|..+.+..+..+.... ...+++|++= . |+.....- -.+...|||.+++=
T Consensus 130 -~l~s~ee~~~kI~Aa~~a~-~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~ 189 (285)
T TIGR02320 130 -PQASVEEFCGKIRAGKDAQ-TTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH 189 (285)
T ss_pred -cccCHHHHHHHHHHHHHhc-cCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec
Confidence 1246666666665544331 1346888774 1 22111111 24566999999874
No 430
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=58.20 E-value=1.9e+02 Score=29.75 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=53.2
Q ss_pred HHHCCCcEEEEecCCCCCCCccccccccCCCC--hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChH-------------
Q psy10999 265 VAKGKAEHIVISGHDGGTGASSWTGIKNAGLP--WELGVAETHQVLALNNLRSRVVLQADGQIRTGF------------- 329 (447)
Q Consensus 265 a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p--~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~------------- 329 (447)
+.+.|+|.+-|+= |..|... +-.+.| ..+.|.++++.+ ++||..-||=..+.
T Consensus 164 v~~TgvD~LAvai--Gt~HG~Y----k~~~~p~L~f~~L~~I~~~~-------~iPLVLHGgSGip~e~~~~~~~~g~~~ 230 (307)
T PRK05835 164 VKESQVDYLAPAI--GTSHGAF----KFKGEPKLDFERLQEVKRLT-------NIPLVLHGASAIPDDVRKSYLDAGGDL 230 (307)
T ss_pred HHhhCCCEEEEcc--Ccccccc----CCCCCCccCHHHHHHHHHHh-------CCCEEEeCCCCCchHHhhhhhhhcccc
Confidence 4567999988874 2233221 000222 345677777764 59999999988777
Q ss_pred ---------HHHHHHHcCCCeeccChHHHHHh
Q psy10999 330 ---------DVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 330 ---------Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
++.||..+|..-|-++|-+..+.
T Consensus 231 ~~~~g~~~e~~~kai~~GI~KiNi~T~l~~a~ 262 (307)
T PRK05835 231 KGSKGVPFEFLQESVKGGINKVNTDTDLRIAF 262 (307)
T ss_pred ccccCCCHHHHHHHHHcCceEEEeChHHHHHH
Confidence 79999999999999999887764
No 431
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=58.14 E-value=86 Score=30.78 Aligned_cols=102 Identities=14% Similarity=0.106 Sum_probs=64.9
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 306 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~ 306 (447)
+.+...+.|..||+. |.+|.+- ..|.|- .-..+.+..+|+|.|+.+==.. +. ........+..+.+
T Consensus 134 ~~~~~~~~l~~L~~~--G~~ialD---DFGtG~ssl~~L~~l~~d~iKID~~fi~~-------i~-~~~~~~~iv~~iv~ 200 (256)
T COG2200 134 DLDTALALLRQLREL--GVRIALD---DFGTGYSSLSYLKRLPPDILKIDRSFVRD-------LE-TDARDQAIVRAIVA 200 (256)
T ss_pred CHHHHHHHHHHHHHC--CCeEEEE---CCCCCHHHHHHHhhCCCCeEEECHHHHhh-------cc-cCcchHHHHHHHHH
Confidence 334567789999987 6677666 556653 4456778999999998762211 00 01112233444444
Q ss_pred HHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCe---eccChH
Q psy10999 307 VLALNNLRSRVVLQADGQIRTGFDVVVAALLGADE---IGLSTA 347 (447)
Q Consensus 307 ~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~---V~iGt~ 347 (447)
...+.| +.| ++-||.|.........+|.|. ..+++|
T Consensus 201 la~~l~----~~v-vaEGVEt~~ql~~L~~~G~~~~QGylf~~P 239 (256)
T COG2200 201 LAHKLG----LTV-VAEGVETEEQLDLLRELGCDYLQGYLFSRP 239 (256)
T ss_pred HHHHCC----CEE-EEeecCCHHHHHHHHHcCCCeEeeccccCC
Confidence 444433 555 456899999999999999994 445554
No 432
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=57.99 E-value=39 Score=32.51 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=41.4
Q ss_pred HHHHHHHHHHCCCcEEEEecC--CCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEE-----cCCCCC---
Q psy10999 258 VGVVASGVAKGKAEHIVISGH--DGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQA-----DGQIRT--- 327 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~--~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~via-----dGGIrt--- 327 (447)
...++..|.+.|||-|-+-.. .||+ .|....+..+.+.. ++||.+ .|.+..
T Consensus 9 s~~~a~~A~~~GAdRiELc~~l~~GGl------------TPS~g~i~~~~~~~-------~ipv~vMIRpr~gdF~Ys~~ 69 (201)
T PF03932_consen 9 SLEDALAAEAGGADRIELCSNLEVGGL------------TPSLGLIRQAREAV-------DIPVHVMIRPRGGDFVYSDE 69 (201)
T ss_dssp SHHHHHHHHHTT-SEEEEEBTGGGT-B---------------HHHHHHHHHHT-------TSEEEEE--SSSS-S---HH
T ss_pred CHHHHHHHHHcCCCEEEECCCccCCCc------------CcCHHHHHHHHhhc-------CCceEEEECCCCCCccCCHH
Confidence 457788899999999976442 2221 26666677776642 467666 333332
Q ss_pred -----hHHHHHHHHcCCCeeccCh
Q psy10999 328 -----GFDVVVAALLGADEIGLST 346 (447)
Q Consensus 328 -----g~Dv~kAlaLGAd~V~iGt 346 (447)
-.|+..+..+|||+|.+|-
T Consensus 70 E~~~M~~dI~~~~~~GadG~VfG~ 93 (201)
T PF03932_consen 70 EIEIMKEDIRMLRELGADGFVFGA 93 (201)
T ss_dssp HHHHHHHHHHHHHHTT-SEEEE--
T ss_pred HHHHHHHHHHHHHHcCCCeeEEEe
Confidence 2567888899999999994
No 433
>cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway. In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP.
Probab=57.79 E-value=96 Score=29.71 Aligned_cols=33 Identities=24% Similarity=0.040 Sum_probs=26.6
Q ss_pred EEEcCCCCC---------hHHHHHHHHcCCCeeccChHHHHH
Q psy10999 319 LQADGQIRT---------GFDVVVAALLGADEIGLSTAPLIT 351 (447)
Q Consensus 319 viadGGIrt---------g~Dv~kAlaLGAd~V~iGt~~L~a 351 (447)
+++..||+- +.+.-.++..||+.+.+||+.+.+
T Consensus 165 ~~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a 206 (216)
T cd04725 165 LILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQA 206 (216)
T ss_pred eEEcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccC
Confidence 588999995 346777788999999999987653
No 434
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=57.78 E-value=33 Score=35.68 Aligned_cols=59 Identities=17% Similarity=0.271 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEE--EecCCCCCCCc
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIV--ISGHDGGTGAS 285 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~--VsG~~GGtg~a 285 (447)
.-+++++.++|..+++.. ++||.+=.--..|.+. -+..+.++|||.|. +.|-|+++|.+
T Consensus 167 ~~~P~~v~~lv~~l~~~~-~v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGeraGN~ 228 (365)
T TIGR02660 167 ILDPFSTYELVRALRQAV-DLPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGERAGNA 228 (365)
T ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeeccccccccC
Confidence 446788889999999876 4677665333446654 34567899999996 56777776654
No 435
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=57.46 E-value=58 Score=29.52 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=20.9
Q ss_pred CCCCChHHHHHHHHcCCCeeccChH
Q psy10999 323 GQIRTGFDVVVAALLGADEIGLSTA 347 (447)
Q Consensus 323 GGIrtg~Dv~kAlaLGAd~V~iGt~ 347 (447)
..+.|..++.++..+|+|.+.++..
T Consensus 100 ~~~~t~~~~~~~~~~g~d~i~~~~~ 124 (196)
T cd00564 100 VSTHSLEEALRAEELGADYVGFGPV 124 (196)
T ss_pred eeCCCHHHHHHHhhcCCCEEEECCc
Confidence 3357889999999999999998754
No 436
>PRK02227 hypothetical protein; Provisional
Probab=57.23 E-value=99 Score=30.64 Aligned_cols=100 Identities=22% Similarity=0.203 Sum_probs=51.8
Q ss_pred HHHHHHHhCCC-CceEEEEee---ecc-HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHH
Q psy10999 235 LIYDLKCANPN-ARISVKLVS---EVG-VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLA 309 (447)
Q Consensus 235 ~I~~Lr~~~p~-~pI~VKlv~---~~G-i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~ 309 (447)
.|+++++..++ +||+..+.- ..| +...+..+...|+|+|.| |--|.... .-..+.+..+.++++
T Consensus 41 vir~Iv~~~~~~~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKv-Gl~~~~~~----------~~~~~~~~~v~~a~~ 109 (238)
T PRK02227 41 VIREIVAAVPGRKPVSATIGDVPYKPGTISLAALGAAATGADYVKV-GLYGGKTA----------EEAVEVMKAVVRAVK 109 (238)
T ss_pred HHHHHHHHhCCCCCceeeccCCCCCchHHHHHHHHHHhhCCCEEEE-cCCCCCcH----------HHHHHHHHHHHHhhh
Confidence 35555554443 677766431 111 112344567789999999 43232210 013344555555554
Q ss_pred hcCCCCceEEE----EcC----CCCChHHHHHHHHcCCCeeccChH
Q psy10999 310 LNNLRSRVVLQ----ADG----QIRTGFDVVVAALLGADEIGLSTA 347 (447)
Q Consensus 310 ~~glr~~v~vi----adG----GIrtg~Dv~kAlaLGAd~V~iGt~ 347 (447)
.+. ....|+ +|. .+....-...+...|++++++-|.
T Consensus 110 ~~~--~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa 153 (238)
T PRK02227 110 DLD--PGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTA 153 (238)
T ss_pred hcC--CCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecc
Confidence 432 233333 332 233333344566699999999874
No 437
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=56.91 E-value=99 Score=27.46 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=53.5
Q ss_pred HHHHHHHhCCCCceEEEEeeeccHH---HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 235 LIYDLKCANPNARISVKLVSEVGVG---VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 235 ~I~~Lr~~~p~~pI~VKlv~~~Gi~---~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
.+..+++. .+.|+++.+....-.. ..+..+.++|+|+|.|.+..+-. ...+.+..+.+++.
T Consensus 48 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~~~~~~---------------~~~~~~~~~~i~~~ 111 (200)
T cd04722 48 VLKEVAAE-TDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYL---------------AREDLELIRELREA 111 (200)
T ss_pred HHHHHHhh-cCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEeccCCcH---------------HHHHHHHHHHHHHh
Confidence 35555554 3678888765321111 11457889999999997653210 12233444443322
Q ss_pred CCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChH
Q psy10999 312 NLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 347 (447)
Q Consensus 312 glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~ 347 (447)
+ .++++++.-...+..+...+..+|+|.+.+...
T Consensus 112 -~-~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~ 145 (200)
T cd04722 112 -V-PDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNG 145 (200)
T ss_pred -c-CCceEEEEECCCCccchhhHHHcCCCEEEEcCC
Confidence 1 246777765544443333357789999988764
No 438
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=56.61 E-value=2e+02 Score=28.59 Aligned_cols=96 Identities=19% Similarity=0.129 Sum_probs=54.9
Q ss_pred HHHHHHHHhCCCCceEEEEee--ecc--------HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHH
Q psy10999 234 ELIYDLKCANPNARISVKLVS--EVG--------VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAE 303 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~--~~G--------i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~e 303 (447)
+.|+.+++.-|+.++..=.-. ..| ...+.+.+.++|+|.|.|.-+ . .....+.+
T Consensus 59 e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~---~-------------~~~~~~~~ 122 (275)
T cd07937 59 ERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDA---L-------------NDVRNLEV 122 (275)
T ss_pred HHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHHHHHcCCCEEEEeec---C-------------ChHHHHHH
Confidence 567777776555454321100 011 345667788999999988533 1 11344556
Q ss_pred HHHHHHhcCCCCceEEE-EcCCCCChHHHH----HHHHcCCCeeccC
Q psy10999 304 THQVLALNNLRSRVVLQ-ADGQIRTGFDVV----VAALLGADEIGLS 345 (447)
Q Consensus 304 v~~~l~~~glr~~v~vi-adGGIrtg~Dv~----kAlaLGAd~V~iG 345 (447)
..+..++.|+.-.+.+- ++++..+...+. ++..+|||.+.+.
T Consensus 123 ~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~ 169 (275)
T cd07937 123 AIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK 169 (275)
T ss_pred HHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc
Confidence 66666776743223232 356666766665 5577898765443
No 439
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=56.59 E-value=1.5e+02 Score=29.44 Aligned_cols=49 Identities=27% Similarity=0.234 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHH
Q psy10999 297 WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350 (447)
Q Consensus 297 ~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~ 350 (447)
...-|..+.+.|+.+|. +|.|+.|=. ..+|-.|..+|||.|=+-|....
T Consensus 109 ~~~~l~~~i~~L~~~gI--rvSLFiDP~---~~qi~~A~~~Gad~VELhTG~yA 157 (239)
T PF03740_consen 109 NRDRLKPVIKRLKDAGI--RVSLFIDPD---PEQIEAAKELGADRVELHTGPYA 157 (239)
T ss_dssp GHHHHHHHHHHHHHTT---EEEEEE-S----HHHHHHHHHTT-SEEEEETHHHH
T ss_pred CHHHHHHHHHHHHhCCC--EEEEEeCCC---HHHHHHHHHcCCCEEEEehhHhh
Confidence 45778999999999887 599999974 88899999999999999997654
No 440
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=56.18 E-value=2.3e+02 Score=28.68 Aligned_cols=102 Identities=14% Similarity=0.074 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEE--EEee--eccHHH---HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChH
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISV--KLVS--EVGVGV---VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE 298 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~V--Klv~--~~Gi~~---~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~ 298 (447)
+.+.+++.+.|+..++.-.+.++.| ..=+ ..|+.+ -++...++|||.|-|.|. .+.
T Consensus 124 lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGAD~vfi~g~-----------------~~~ 186 (285)
T TIGR02317 124 LVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGADMIFPEAL-----------------TSL 186 (285)
T ss_pred ccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCCCEEEeCCC-----------------CCH
Confidence 4567778778888777543333332 2111 123332 234567899999999542 122
Q ss_pred HHHHHHHHHHHhcCCCCceEE---EEcCCCCCh-HHHHHHHHcCCCeeccChHHHHHh
Q psy10999 299 LGVAETHQVLALNNLRSRVVL---QADGQIRTG-FDVVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 299 ~~L~ev~~~l~~~glr~~v~v---iadGGIrtg-~Dv~kAlaLGAd~V~iGt~~L~al 352 (447)
.-+.++.+.+ .+|+ +..+|- ++ .++...-.||...|.+|...+.+.
T Consensus 187 e~i~~~~~~i-------~~Pl~~n~~~~~~-~p~~s~~eL~~lGv~~v~~~~~~~~aa 236 (285)
T TIGR02317 187 EEFRQFAKAV-------KVPLLANMTEFGK-TPLFTADELREAGYKMVIYPVTAFRAM 236 (285)
T ss_pred HHHHHHHHhc-------CCCEEEEeccCCC-CCCCCHHHHHHcCCcEEEEchHHHHHH
Confidence 3344444433 2455 344543 33 356667788999999998777654
No 441
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=56.02 E-value=67 Score=30.79 Aligned_cols=67 Identities=15% Similarity=-0.028 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
...++.+.+.|+..|-|.-.. ..+...|..+.+. ++ ++ -++-.|.|.+..++-.|+.+|
T Consensus 25 ~~~~~a~~~gGi~~iEvt~~~---------------~~~~~~i~~l~~~---~~--~~-~~iGaGTV~~~~~~~~a~~aG 83 (206)
T PRK09140 25 LAHVGALIEAGFRAIEIPLNS---------------PDPFDSIAALVKA---LG--DR-ALIGAGTVLSPEQVDRLADAG 83 (206)
T ss_pred HHHHHHHHHCCCCEEEEeCCC---------------ccHHHHHHHHHHH---cC--CC-cEEeEEecCCHHHHHHHHHcC
Confidence 345678889999999886321 1234455555443 22 12 378999999999999999999
Q ss_pred CCeeccCh
Q psy10999 339 ADEIGLST 346 (447)
Q Consensus 339 Ad~V~iGt 346 (447)
|+++..+.
T Consensus 84 A~fivsp~ 91 (206)
T PRK09140 84 GRLIVTPN 91 (206)
T ss_pred CCEEECCC
Confidence 99998875
No 442
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.93 E-value=50 Score=31.76 Aligned_cols=87 Identities=9% Similarity=-0.021 Sum_probs=56.2
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccC-CCChHHHHHHHHHHHHhcC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNA-GLPWELGVAETHQVLALNN 312 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~-G~p~~~~L~ev~~~l~~~g 312 (447)
+.++..++. ++|. ++.+-..+++..+.++|+|.|.+==. + .. |+..+.+|. .-+
T Consensus 88 ~vi~~a~~~--~i~~----iPG~~TptEi~~A~~~Ga~~vK~FPa--~----------~~GG~~yikal~---~pl---- 142 (201)
T PRK06015 88 ELLAAANDS--DVPL----LPGAATPSEVMALREEGYTVLKFFPA--E----------QAGGAAFLKALS---SPL---- 142 (201)
T ss_pred HHHHHHHHc--CCCE----eCCCCCHHHHHHHHHCCCCEEEECCc--h----------hhCCHHHHHHHH---hhC----
Confidence 446666654 4444 22223467888999999999988421 1 11 233333332 222
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHH
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~ 348 (447)
.+++++.+|||.. .++..-+..|+..++.|+.+
T Consensus 143 --p~~~l~ptGGV~~-~n~~~~l~ag~~~~~ggs~l 175 (201)
T PRK06015 143 --AGTFFCPTGGISL-KNARDYLSLPNVVCVGGSWV 175 (201)
T ss_pred --CCCcEEecCCCCH-HHHHHHHhCCCeEEEEchhh
Confidence 3699999999965 68999999999877776643
No 443
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=55.32 E-value=35 Score=35.25 Aligned_cols=58 Identities=17% Similarity=0.253 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHHHHHhCC-CCceEEEEeeeccHHH-HHHHHHHCCCcEEEEe--cCCCCCCC
Q psy10999 227 YSIEDLAELIYDLKCANP-NARISVKLVSEVGVGV-VASGVAKGKAEHIVIS--GHDGGTGA 284 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p-~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~Vs--G~~GGtg~ 284 (447)
-.+++..+.+..+|+..+ ..||.+=.--..|.+. -+..+.++|+|.|+.| |-|+|+|.
T Consensus 169 ~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN 230 (333)
T TIGR03217 169 MLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGN 230 (333)
T ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccC
Confidence 457888999999998764 5677665333345554 3456789999999654 66666543
No 444
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=55.31 E-value=70 Score=33.06 Aligned_cols=80 Identities=19% Similarity=0.170 Sum_probs=49.5
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCC
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 340 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd 340 (447)
.+..+.++|+|.|-|. |+.|-+.+... ......+..+.+..+.+.+ .+.++..++.=|+.+-.|+-+|...|+|
T Consensus 30 i~~~L~~aGv~~IEvg-~~~g~g~~s~~-~g~~~~~~~e~i~~~~~~~----~~~~~~~ll~pg~~~~~dl~~a~~~gvd 103 (337)
T PRK08195 30 IARALDAAGVPVIEVT-HGDGLGGSSFN-YGFGAHTDEEYIEAAAEVV----KQAKIAALLLPGIGTVDDLKMAYDAGVR 103 (337)
T ss_pred HHHHHHHcCCCEEEee-cCCCCCCcccc-CCCCCCCHHHHHHHHHHhC----CCCEEEEEeccCcccHHHHHHHHHcCCC
Confidence 4567788999999994 43332222110 0112234455555554432 1234555566678899999999999999
Q ss_pred eeccCh
Q psy10999 341 EIGLST 346 (447)
Q Consensus 341 ~V~iGt 346 (447)
.|-+.+
T Consensus 104 ~iri~~ 109 (337)
T PRK08195 104 VVRVAT 109 (337)
T ss_pred EEEEEE
Confidence 987764
No 445
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=55.12 E-value=8.6 Score=38.29 Aligned_cols=74 Identities=16% Similarity=0.104 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 257 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 257 Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
.....|....++||++|-|=-- -. .++ -...-|..+.+.. ++||..-==|-++.+|..|.+
T Consensus 69 d~~~~a~~y~~~GA~aiSVlTe-~~----------~F~-Gs~~dL~~v~~~~-------~~PvL~KDFIid~~QI~eA~~ 129 (254)
T PF00218_consen 69 DPAEIAKAYEEAGAAAISVLTE-PK----------FFG-GSLEDLRAVRKAV-------DLPVLRKDFIIDPYQIYEARA 129 (254)
T ss_dssp SHHHHHHHHHHTT-SEEEEE---SC----------CCH-HHHHHHHHHHHHS-------SS-EEEES---SHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEECC-CC----------CCC-CCHHHHHHHHHHh-------CCCcccccCCCCHHHHHHHHH
Confidence 3456778888999999966311 10 111 1234466666653 589999888999999999999
Q ss_pred cCCCeeccChHHH
Q psy10999 337 LGADEIGLSTAPL 349 (447)
Q Consensus 337 LGAd~V~iGt~~L 349 (447)
+|||+|.+=..+|
T Consensus 130 ~GADaVLLI~~~L 142 (254)
T PF00218_consen 130 AGADAVLLIAAIL 142 (254)
T ss_dssp TT-SEEEEEGGGS
T ss_pred cCCCEeehhHHhC
Confidence 9999997655444
No 446
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=54.86 E-value=2.2e+02 Score=27.97 Aligned_cols=49 Identities=12% Similarity=0.081 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHhCC-CCceEEEEeeec--cHHHHHHHHHHCCCcEEEEe
Q psy10999 228 SIEDLAELIYDLKCANP-NARISVKLVSEV--GVGVVASGVAKGKAEHIVIS 276 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p-~~pI~VKlv~~~--Gi~~~A~~a~~aGaD~I~Vs 276 (447)
+.++..+.++..++... ++||++-+.... .....++.+.++|+|+|.+.
T Consensus 48 s~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~Gad~v~v~ 99 (281)
T cd00408 48 TDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAGADGVLVV 99 (281)
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcCCCEEEEC
Confidence 55677778887776543 567666543211 01124556788999999775
No 447
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=54.76 E-value=37 Score=37.36 Aligned_cols=62 Identities=13% Similarity=0.165 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEE--EecCCCCCCCccc
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIV--ISGHDGGTGASSW 287 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~--VsG~~GGtg~a~~ 287 (447)
...+.+..++|+++++..|..+|.+=.--..|.+. -+..+.++||+.|. |-|-|+|+|.+++
T Consensus 179 ~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiGERaGNa~L 243 (526)
T TIGR00977 179 GTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYGERCGNANL 243 (526)
T ss_pred CcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCccCCCcH
Confidence 34677888999999998765446665322345654 34568899999994 5688888887754
No 448
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=54.66 E-value=27 Score=38.95 Aligned_cols=58 Identities=21% Similarity=0.236 Sum_probs=41.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHH-HHHHHHCCCcEEEE--ecCCCCCC
Q psy10999 225 DIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVV-ASGVAKGKAEHIVI--SGHDGGTG 283 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~-A~~a~~aGaD~I~V--sG~~GGtg 283 (447)
..-++....+++..||+.. ++||.+=.-...|.+.. ...|+++|||.|+. +|-+|++|
T Consensus 178 G~l~P~~v~~lv~alk~~~-~ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg~tG 238 (596)
T PRK14042 178 GLLTPTVTVELYAGLKQAT-GLPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSGGAS 238 (596)
T ss_pred cCCCHHHHHHHHHHHHhhc-CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccCCCC
Confidence 3445677888999999886 47887764445566653 35688999999975 46666654
No 449
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=54.65 E-value=1e+02 Score=31.53 Aligned_cols=87 Identities=18% Similarity=0.083 Sum_probs=45.3
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCC---CCCccc--cccccCCCChH---HHHHHHHHHHHhcCCCCceEEEEc-------
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGG---TGASSW--TGIKNAGLPWE---LGVAETHQVLALNNLRSRVVLQAD------- 322 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GG---tg~a~~--~~~~~~G~p~~---~~L~ev~~~l~~~glr~~v~viad------- 322 (447)
....|+.+.++|+|+|.|-+..|. +-.+|. .-.|.+|-+.+ ..+.++.+.+++. +.++++|.+.
T Consensus 156 ~~~aA~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~-vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 156 FVAAARRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAV-WPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHH-cCCCceEEEEEcccccC
Confidence 335578889999999999654332 001111 11344564433 2223444443332 3446677664
Q ss_pred -CCCC--ChHHHHHHHH-cCCCeeccC
Q psy10999 323 -GQIR--TGFDVVVAAL-LGADEIGLS 345 (447)
Q Consensus 323 -GGIr--tg~Dv~kAla-LGAd~V~iG 345 (447)
+|.. ....+++.|. .|.|.+-+.
T Consensus 235 ~~g~~~~e~~~ia~~Le~~gvd~iev~ 261 (336)
T cd02932 235 EGGWDLEDSVELAKALKELGVDLIDVS 261 (336)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 5542 2234555554 578877654
No 450
>PTZ00300 pyruvate kinase; Provisional
Probab=54.65 E-value=89 Score=33.83 Aligned_cols=104 Identities=18% Similarity=0.116 Sum_probs=61.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChH-HHHHHH
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE-LGVAET 304 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~-~~L~ev 304 (447)
..+.+|..+..+.+...+...+|+.|+=...++...-+-+ .++|+|.|. ++--+ -..|.+-. ....++
T Consensus 169 VrsaeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~--~~~DgImVa----RGDLg-----vei~~e~vp~~Qk~I 237 (454)
T PTZ00300 169 IRSAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSII--EESDGIMVA----RGDLG-----VEIPAEKVVVAQKIL 237 (454)
T ss_pred CCCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHH--HhCCEEEEe----cchhh-----hhcChHHHHHHHHHH
Confidence 4567777665666655444567888853322333222222 789999993 22100 11222211 233445
Q ss_pred HHHHHhcCCCCceEEEEcCCCCC------------hHHHHHHHHcCCCeecc
Q psy10999 305 HQVLALNNLRSRVVLQADGQIRT------------GFDVVVAALLGADEIGL 344 (447)
Q Consensus 305 ~~~l~~~glr~~v~viadGGIrt------------g~Dv~kAlaLGAd~V~i 344 (447)
.+.+.++| .|+|++..+-. -.||+-|+.-|+|+|++
T Consensus 238 i~~~~~~g----kpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavML 285 (454)
T PTZ00300 238 ISKCNVAG----KPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVML 285 (454)
T ss_pred HHHHHHcC----CCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEE
Confidence 55555544 78998877644 36999999999999988
No 451
>PRK00915 2-isopropylmalate synthase; Validated
Probab=54.14 E-value=41 Score=36.76 Aligned_cols=62 Identities=27% Similarity=0.381 Sum_probs=43.6
Q ss_pred CCCHHHHHHHHHHHHHhCCC---CceEEEEeeeccHHH-HHHHHHHCCCcEEE--EecCCCCCCCccc
Q psy10999 226 IYSIEDLAELIYDLKCANPN---ARISVKLVSEVGVGV-VASGVAKGKAEHIV--ISGHDGGTGASSW 287 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~---~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~--VsG~~GGtg~a~~ 287 (447)
...++++.++|.++++..|+ +||.+=.--..|.+. -+..+.++||+.|. |.|-|.++|.++.
T Consensus 174 ~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~GlGERaGNa~l 241 (513)
T PRK00915 174 YTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGERAGNAAL 241 (513)
T ss_pred CCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeecccccccCccH
Confidence 34678888999999988765 677665333345654 34567899999994 5688777776643
No 452
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=53.96 E-value=40 Score=33.56 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHH-HHHHHHCCCcEEEEe--cCCCCCC
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVV-ASGVAKGKAEHIVIS--GHDGGTG 283 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~-A~~a~~aGaD~I~Vs--G~~GGtg 283 (447)
.-++++..+++..+|+..+ .|+.+=.--..|.+.. +..+.++|+|.|..+ |-|.|.|
T Consensus 166 ~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGeraG 225 (262)
T cd07948 166 IATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGERNG 225 (262)
T ss_pred CCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccccccC
Confidence 3467788889999999875 6776653334466543 456789999988544 5544443
No 453
>PRK14567 triosephosphate isomerase; Provisional
Probab=53.86 E-value=33 Score=34.21 Aligned_cols=53 Identities=19% Similarity=0.095 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHHHh----c--CCCCceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 297 WELGVAETHQVLAL----N--NLRSRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 297 ~~~~L~ev~~~l~~----~--glr~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
+.+-+.++|..+++ . .+.+.++|+.-|++ ++.++...+.++ .|++.+|++.|-
T Consensus 177 s~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV-~~~N~~~l~~~~diDG~LVGgasL~ 236 (253)
T PRK14567 177 SLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSL-KAENAKDILSLPDVDGGLIGGASLK 236 (253)
T ss_pred CHHHHHHHHHHHHHHHHhhcccccccceEEEcCcC-CHHHHHHHHcCCCCCEEEeehhhhc
Confidence 34445555555443 1 12346999999999 999999999999 999999998773
No 454
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=53.70 E-value=34 Score=37.15 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=39.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHH-HHHHHHCCCcEEEEe--cCCCCC
Q psy10999 225 DIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVV-ASGVAKGKAEHIVIS--GHDGGT 282 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~-A~~a~~aGaD~I~Vs--G~~GGt 282 (447)
..-++++..++|..||+ .+++||.+=.-...|.+.. ...|.++|||.|+.+ |.++|+
T Consensus 187 G~l~P~~v~~Lv~alk~-~~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~ga 246 (468)
T PRK12581 187 GILTPKAAKELVSGIKA-MTNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSEGT 246 (468)
T ss_pred CCcCHHHHHHHHHHHHh-ccCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCCCc
Confidence 44567788899999998 4678887764445566543 456889999999654 444444
No 455
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=53.62 E-value=28 Score=34.56 Aligned_cols=40 Identities=10% Similarity=0.071 Sum_probs=29.3
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEe
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVIS 276 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~Vs 276 (447)
+.|+.+++. +++||++-. ..+...++..+.+.|+|+|.|.
T Consensus 165 ~~I~~I~e~-~~vpVI~eg--GI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 165 YNLRIIIER-ADVPVIVDA--GIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred HHHHHHHHh-CCCcEEEeC--CCCCHHHHHHHHHcCCCEEEEC
Confidence 567788776 466776542 2244689999999999999883
No 456
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=53.52 E-value=1.1e+02 Score=33.32 Aligned_cols=106 Identities=18% Similarity=0.136 Sum_probs=60.0
Q ss_pred CCCHHHHHHHHHHHHHhC-CCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCC-hHHHHHH
Q psy10999 226 IYSIEDLAELIYDLKCAN-PNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP-WELGVAE 303 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~-p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p-~~~~L~e 303 (447)
..+.+|+.+.-..|.+.. ...+|+.|+=...|+....+-+ +. +|+|.+...+ ...+.|.+ ...+..+
T Consensus 193 V~sa~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~-~~-~dgi~iG~gD---------L~~~lg~~~l~~~~~~ 261 (473)
T TIGR01064 193 VRTAEDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIA-EA-SDGIMVARGD---------LGVEIPAEEVPIAQKK 261 (473)
T ss_pred CCCHHHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHH-hh-CCcEEEchHH---------HHhhcCcHHHHHHHHH
Confidence 356677644444444433 3557888853322333222222 22 6888873221 11123332 3344556
Q ss_pred HHHHHHhcCCCCceEEEEcCCC-----C-------ChHHHHHHHHcCCCeeccCh
Q psy10999 304 THQVLALNNLRSRVVLQADGQI-----R-------TGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 304 v~~~l~~~glr~~v~viadGGI-----r-------tg~Dv~kAlaLGAd~V~iGt 346 (447)
+..++.++| +|+|....+ . ...|++.++.-|+|+++++.
T Consensus 262 ii~aaraag----~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~ 312 (473)
T TIGR01064 262 MIRKCNRAG----KPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSG 312 (473)
T ss_pred HHHHHHHcC----CCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcc
Confidence 666666655 677776643 4 77999999999999998843
No 457
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=53.08 E-value=2e+02 Score=28.57 Aligned_cols=48 Identities=25% Similarity=0.285 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 297 WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 297 ~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
...-|..+.+.|++.|+ +|.|++|- +..+|-.|..+|||.|=+-|...
T Consensus 108 ~~~~l~~~i~~l~~~gI--~VSLFiDP---~~~qi~~A~~~GAd~VELhTG~Y 155 (237)
T TIGR00559 108 LKDKLCELVKRFHAAGI--EVSLFIDA---DKDQISAAAEVGADRIEIHTGPY 155 (237)
T ss_pred CHHHHHHHHHHHHHCCC--EEEEEeCC---CHHHHHHHHHhCcCEEEEechhh
Confidence 45668888999999887 59999987 58899999999999999988654
No 458
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=53.03 E-value=1e+02 Score=33.53 Aligned_cols=103 Identities=17% Similarity=0.083 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCCh-HHHHHHHH
Q psy10999 227 YSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW-ELGVAETH 305 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~-~~~L~ev~ 305 (447)
.+.+|+.+.=..+.+.+...+|+.|+=...++.... ...+. +|+|.|. ++-- --..|.|- .....++.
T Consensus 197 ~~~~di~~~r~~l~~~~~~~~iiakIEt~~av~nld-eI~~~-~DgImIa----rgDL-----g~e~g~~~v~~~qk~ii 265 (480)
T cd00288 197 RKASDVLEIREVLGEKGKDIKIIAKIENQEGVNNFD-EILEA-SDGIMVA----RGDL-----GVEIPAEEVFLAQKMLI 265 (480)
T ss_pred CCHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHH-HHHHh-cCEEEEC----cchh-----hhhcChHHHHHHHHHHH
Confidence 466666433333444455677888853322333222 22333 8999993 2211 01233332 22344555
Q ss_pred HHHHhcCCCCceEEEEcCCCCC------------hHHHHHHHHcCCCeecc
Q psy10999 306 QVLALNNLRSRVVLQADGQIRT------------GFDVVVAALLGADEIGL 344 (447)
Q Consensus 306 ~~l~~~glr~~v~viadGGIrt------------g~Dv~kAlaLGAd~V~i 344 (447)
+.+.++| .|+|++..+-. -.||+-|+.-|||++++
T Consensus 266 ~~~~~~g----kpvi~ATqmLeSM~~~p~PTRAEvtDVanav~dG~D~vmL 312 (480)
T cd00288 266 AKCNLAG----KPVITATQMLESMIYNPRPTRAEVSDVANAVLDGTDCVML 312 (480)
T ss_pred HHHHHcC----CCEEEEchhHHHHhhCCCCCchhhHHHHHHHHhCCcEEEE
Confidence 6666554 68888777643 36999999999999988
No 459
>PRK02227 hypothetical protein; Provisional
Probab=52.83 E-value=51 Score=32.62 Aligned_cols=74 Identities=20% Similarity=0.178 Sum_probs=47.6
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEc-CCCC-ChHH----H
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQAD-GQIR-TGFD----V 331 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viad-GGIr-tg~D----v 331 (447)
....|..+.++|+|+|++-+..-|. .|--..+.+.++++.+. .+.||=+. |.+- .+.. +
T Consensus 9 ~~eEA~~Al~~GaDiIDvK~P~~Ga----------LGA~~p~vir~Iv~~~~-----~~~pvSAtiGD~p~~p~~~~~aa 73 (238)
T PRK02227 9 NLEEALEALAGGADIIDVKNPKEGS----------LGANFPWVIREIVAAVP-----GRKPVSATIGDVPYKPGTISLAA 73 (238)
T ss_pred CHHHHHHHHhcCCCEEEccCCCCCC----------CCCCCHHHHHHHHHHhC-----CCCCceeeccCCCCCchHHHHHH
Confidence 3466888999999999999885442 22223356888888753 34566553 4332 2322 3
Q ss_pred HHHHHcCCCeeccCh
Q psy10999 332 VVAALLGADEIGLST 346 (447)
Q Consensus 332 ~kAlaLGAd~V~iGt 346 (447)
..+.+.|+|.|=+|-
T Consensus 74 ~~~a~~GvDyVKvGl 88 (238)
T PRK02227 74 LGAAATGADYVKVGL 88 (238)
T ss_pred HHHHhhCCCEEEEcC
Confidence 344457999998885
No 460
>PRK05826 pyruvate kinase; Provisional
Probab=52.53 E-value=1e+02 Score=33.40 Aligned_cols=105 Identities=19% Similarity=0.079 Sum_probs=62.2
Q ss_pred CCCHHHHHHHHHHHHHhCC-CCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCC-hHHHHHH
Q psy10999 226 IYSIEDLAELIYDLKCANP-NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLP-WELGVAE 303 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p-~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p-~~~~L~e 303 (447)
+.+.+|..+....+.+.+. ...|+.|+=...|+...- ...+. +|+|.|. ++-- --+.|.| ...+..+
T Consensus 195 V~saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nld-eI~~~-~DgImIg----rgDL-----g~elg~~~v~~~qk~ 263 (465)
T PRK05826 195 VRSAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNID-EIIEA-SDGIMVA----RGDL-----GVEIPDEEVPGLQKK 263 (465)
T ss_pred CCCHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHH-HHHHH-cCEEEEC----cchh-----hhhcCcHhHHHHHHH
Confidence 4567777665555666554 678888964333443222 22233 8999982 2210 0123333 2233455
Q ss_pred HHHHHHhcCCCCceEEEEcCCCCC------------hHHHHHHHHcCCCeeccC
Q psy10999 304 THQVLALNNLRSRVVLQADGQIRT------------GFDVVVAALLGADEIGLS 345 (447)
Q Consensus 304 v~~~l~~~glr~~v~viadGGIrt------------g~Dv~kAlaLGAd~V~iG 345 (447)
+.+.+.++| .|+|++..+-. -.||+-|..-|||++++.
T Consensus 264 Ii~~c~~~g----Kpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS 313 (465)
T PRK05826 264 IIRKAREAG----KPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLS 313 (465)
T ss_pred HHHHHHHcC----CCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEec
Confidence 556666554 67888755432 369999999999999876
No 461
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=52.50 E-value=84 Score=32.76 Aligned_cols=67 Identities=13% Similarity=0.096 Sum_probs=43.0
Q ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEEe--cCCC
Q psy10999 214 GVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVIS--GHDG 280 (447)
Q Consensus 214 g~~lisp~~~~~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~Vs--G~~G 280 (447)
|.+-|.-.-.-.+-++.+..+++..||+.+|..||.+=.--..|.+. -+..+.++|+|.|..+ |-||
T Consensus 210 Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGe 279 (347)
T PLN02746 210 GCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGG 279 (347)
T ss_pred CCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccC
Confidence 44444433333445678888999999998765567665333446654 3456889999999654 5443
No 462
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=52.27 E-value=1.7e+02 Score=29.19 Aligned_cols=44 Identities=16% Similarity=0.050 Sum_probs=31.4
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccH----HHHHHHHHHCCCcEEEEecC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGV----GVVASGVAKGKAEHIVISGH 278 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi----~~~A~~a~~aGaD~I~VsG~ 278 (447)
..|..+|+.+ +.||++=.-...|. ...+..+..+|||++.|.=|
T Consensus 174 ~ai~~lk~~~-~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H 221 (250)
T PRK13397 174 MAVPIIQQKT-DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVH 221 (250)
T ss_pred HHHHHHHHHh-CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEec
Confidence 3577888765 67988864444453 35677888999999988754
No 463
>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to
Probab=52.05 E-value=38 Score=33.26 Aligned_cols=79 Identities=16% Similarity=0.173 Sum_probs=48.9
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCC-CChHHHHHHHHHHHHhcCCCCceEEEEcCCCC--ChHHH---
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAG-LPWELGVAETHQVLALNNLRSRVVLQADGQIR--TGFDV--- 331 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G-~p~~~~L~ev~~~l~~~glr~~v~viadGGIr--tg~Dv--- 331 (447)
-...|+.+.++|+|+|.++|+....... ..|.+ ++..+.+..+...... -.+||++|+-.. +..++
T Consensus 18 D~~sA~~~e~~G~~ai~~s~~~~~~s~G----~pD~~~~~~~e~~~~~~~I~~~----~~~Pv~~D~~~G~g~~~~~~~~ 89 (243)
T cd00377 18 DALSARLAERAGFKAIYTSGAGVAASLG----LPDGGLLTLDEVLAAVRRIARA----VDLPVIADADTGYGNALNVART 89 (243)
T ss_pred CHHHHHHHHHcCCCEEEeccHHHHHhcC----CCCCCcCCHHHHHHHHHHHHhh----ccCCEEEEcCCCCCCHHHHHHH
Confidence 3457888899999999999874331111 23333 3555555555544332 268999986653 33334
Q ss_pred -HHHHHcCCCeecc
Q psy10999 332 -VVAALLGADEIGL 344 (447)
Q Consensus 332 -~kAlaLGAd~V~i 344 (447)
.+.+..|+++|.+
T Consensus 90 v~~~~~~G~~gv~i 103 (243)
T cd00377 90 VRELEEAGAAGIHI 103 (243)
T ss_pred HHHHHHcCCEEEEE
Confidence 3555689999888
No 464
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=51.90 E-value=37 Score=36.45 Aligned_cols=83 Identities=17% Similarity=0.168 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHhCCCCceEEEEeeeccHH---HHHHH---HHHCC-CcEEEEecCCCCCCCccccccccCCCChHHHHH
Q psy10999 230 EDLAELIYDLKCANPNARISVKLVSEVGVG---VVASG---VAKGK-AEHIVISGHDGGTGASSWTGIKNAGLPWELGVA 302 (447)
Q Consensus 230 edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~---~~A~~---a~~aG-aD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ 302 (447)
.-|.|.+..++..||.++|+|==+..-|-+ .+++. +-+.+ +|.|+| |.|||+ .-|=|..--+ .|.
T Consensus 147 AairDIl~~~~rR~P~~~viv~pt~VQG~~A~~eIv~aI~~an~~~~~DvlIV-aRGGGS------iEDLW~FNdE-~va 218 (440)
T COG1570 147 AALRDILHTLSRRFPSVEVIVYPTLVQGEGAAEEIVEAIERANQRGDVDVLIV-ARGGGS------IEDLWAFNDE-IVA 218 (440)
T ss_pred HHHHHHHHHHHhhCCCCeEEEEeccccCCCcHHHHHHHHHHhhccCCCCEEEE-ecCcch------HHHHhccChH-HHH
Confidence 457888999999999888877422221221 23332 33344 999999 565653 1233444433 333
Q ss_pred HHHHHHHhcCCCCceEEEEcCCCCC
Q psy10999 303 ETHQVLALNNLRSRVVLQADGQIRT 327 (447)
Q Consensus 303 ev~~~l~~~glr~~v~viadGGIrt 327 (447)
++.-. .++|||.+=|=-|
T Consensus 219 RAi~~-------s~iPvISAVGHEt 236 (440)
T COG1570 219 RAIAA-------SRIPVISAVGHET 236 (440)
T ss_pred HHHHh-------CCCCeEeecccCC
Confidence 33322 3799998766443
No 465
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=51.70 E-value=23 Score=34.90 Aligned_cols=35 Identities=14% Similarity=0.108 Sum_probs=31.4
Q ss_pred CceEEEEcCCCCChHHHHHHHHcC-CCeeccChHHHH
Q psy10999 315 SRVVLQADGQIRTGFDVVVAALLG-ADEIGLSTAPLI 350 (447)
Q Consensus 315 ~~v~viadGGIrtg~Dv~kAlaLG-Ad~V~iGt~~L~ 350 (447)
+.++|+.-|++.. .++...+.++ .|++.+|++.|-
T Consensus 198 ~~~~IlYGGSV~~-~N~~~l~~~~~vDG~LVG~Asl~ 233 (242)
T cd00311 198 EKVRILYGGSVNP-ENAAELLAQPDIDGVLVGGASLK 233 (242)
T ss_pred CceeEEECCCCCH-HHHHHHhcCCCCCEEEeehHhhC
Confidence 4689999999988 9999999999 999999998773
No 466
>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional
Probab=51.57 E-value=44 Score=36.08 Aligned_cols=83 Identities=22% Similarity=0.120 Sum_probs=50.0
Q ss_pred HHHHHHHhCCCCceEEEEeeeccHH--HHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcC
Q psy10999 235 LIYDLKCANPNARISVKLVSEVGVG--VVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNN 312 (447)
Q Consensus 235 ~I~~Lr~~~p~~pI~VKlv~~~Gi~--~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~g 312 (447)
.-.+|....|+ .+-+|+|.|+. .++..+.. |+|++.| |.+ .++. .-| ...+.+...
T Consensus 199 ~~~~l~~~ip~---~~~~vseSGI~t~~d~~~~~~-~~davLi----G~~------lm~~-~d~-~~~~~~L~~------ 256 (454)
T PRK09427 199 RTRELAPLIPA---DVIVISESGIYTHAQVRELSP-FANGFLI----GSS------LMAE-DDL-ELAVRKLIL------ 256 (454)
T ss_pred HHHHHHhhCCC---CcEEEEeCCCCCHHHHHHHHh-cCCEEEE----CHH------HcCC-CCH-HHHHHHHhc------
Confidence 34455554454 33356788885 46666654 7999999 222 1221 112 122222211
Q ss_pred CCCceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 313 LRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 313 lr~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
..|. --||++..|+..|..+|||+++|
T Consensus 257 --~~vK---ICGit~~eda~~a~~~GaD~lGf 283 (454)
T PRK09427 257 --GENK---VCGLTRPQDAKAAYDAGAVYGGL 283 (454)
T ss_pred --cccc---cCCCCCHHHHHHHHhCCCCEEee
Confidence 1232 36999999999999999999987
No 467
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=51.52 E-value=1.2e+02 Score=30.26 Aligned_cols=93 Identities=22% Similarity=0.284 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEee------eccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHH
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVS------EVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGV 301 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~------~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L 301 (447)
+.++..+.++++|+..++.|++ ++. .-|+....+.+.++|+|+++|- .+|.+ -.
T Consensus 72 ~~~~~~~~~~~~r~~~~~~p~v--lm~Y~N~i~~~G~e~f~~~~~~aGvdGviip-----------------DLp~e-e~ 131 (258)
T PRK13111 72 TLADVFELVREIREKDPTIPIV--LMTYYNPIFQYGVERFAADAAEAGVDGLIIP-----------------DLPPE-EA 131 (258)
T ss_pred CHHHHHHHHHHHHhcCCCCCEE--EEecccHHhhcCHHHHHHHHHHcCCcEEEEC-----------------CCCHH-HH
Confidence 3455667888998666778875 343 2366667888999999999993 24553 44
Q ss_pred HHHHHHHHhcCCCCceEEEEcCCCCChHH-HHHHHHcCCCeecc
Q psy10999 302 AETHQVLALNNLRSRVVLQADGQIRTGFD-VVVAALLGADEIGL 344 (447)
Q Consensus 302 ~ev~~~l~~~glr~~v~viadGGIrtg~D-v~kAlaLGAd~V~i 344 (447)
.+..+.++++|+. -|++++- .|..+ +.+...+.-.++++
T Consensus 132 ~~~~~~~~~~gl~-~I~lvap---~t~~eri~~i~~~s~gfIY~ 171 (258)
T PRK13111 132 EELRAAAKKHGLD-LIFLVAP---TTTDERLKKIASHASGFVYY 171 (258)
T ss_pred HHHHHHHHHcCCc-EEEEeCC---CCCHHHHHHHHHhCCCcEEE
Confidence 5666777887764 3433332 24344 44444454445543
No 468
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=51.49 E-value=69 Score=32.24 Aligned_cols=55 Identities=18% Similarity=0.146 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHhC--CCCceEEEEeeeccHHH-HHHHHHHCCCcEEEE--ecCCCCCC
Q psy10999 229 IEDLAELIYDLKCAN--PNARISVKLVSEVGVGV-VASGVAKGKAEHIVI--SGHDGGTG 283 (447)
Q Consensus 229 ~edl~~~I~~Lr~~~--p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~V--sG~~GGtg 283 (447)
+++..+++..+|+.. |..++.+=.--..|.+. -+..+.++|++.|.. .|-|+++|
T Consensus 185 p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd~sv~GlGe~aG 244 (279)
T cd07947 185 PRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWVNCTLLGIGERTG 244 (279)
T ss_pred hHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccccccc
Confidence 356778889998873 44556665333446654 345688999999964 46666654
No 469
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=51.47 E-value=55 Score=32.94 Aligned_cols=87 Identities=17% Similarity=0.141 Sum_probs=43.6
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh-cCCCCceEEEE-cCCCCChHHHHHHH
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL-NNLRSRVVLQA-DGQIRTGFDVVVAA 335 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~-~glr~~v~via-dGGIrtg~Dv~kAl 335 (447)
...+|+.+.++|||+|++- - |-|.....- -..+.+..++...+.+.... ..+++++-+++ -|-|.++.|+...+
T Consensus 159 ~~e~A~~M~~AGaDiiv~H-~-GlT~gG~~G--a~~~~sl~~a~~~~~~i~~aa~~v~~dii~l~hGGPI~~p~D~~~~l 234 (268)
T PF09370_consen 159 NEEQARAMAEAGADIIVAH-M-GLTTGGSIG--AKTALSLEEAAERIQEIFDAARAVNPDIIVLCHGGPIATPEDAQYVL 234 (268)
T ss_dssp SHHHHHHHHHHT-SEEEEE---SS------------S--HHHHHHHHHHHHHHHHCC-TT-EEEEECTTB-SHHHHHHHH
T ss_pred CHHHHHHHHHcCCCEEEec-C-CccCCCCcC--ccccCCHHHHHHHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHH
Confidence 3567888899999999763 2 111111000 01234455555444432221 13556655544 56699999998888
Q ss_pred Hc--CCCeeccChHH
Q psy10999 336 LL--GADEIGLSTAP 348 (447)
Q Consensus 336 aL--GAd~V~iGt~~ 348 (447)
.. |++++.-|+.+
T Consensus 235 ~~t~~~~Gf~G~Ss~ 249 (268)
T PF09370_consen 235 RNTKGIHGFIGASSM 249 (268)
T ss_dssp HH-TTEEEEEESTTT
T ss_pred hcCCCCCEEecccch
Confidence 75 44666655543
No 470
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=51.46 E-value=73 Score=33.21 Aligned_cols=89 Identities=17% Similarity=0.115 Sum_probs=56.8
Q ss_pred ccHHHHHHHHHHCCCcEEEEecC-CCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceE---EEEcCCCCC-hHH
Q psy10999 256 VGVGVVASGVAKGKAEHIVISGH-DGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVV---LQADGQIRT-GFD 330 (447)
Q Consensus 256 ~Gi~~~A~~a~~aGaD~I~VsG~-~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~---viadGGIrt-g~D 330 (447)
.|.......+.++|||.|-+.+. -+..+.+ . -.+.++ |.++.+.+..+|.+--|. ++..+.+.+ ...
T Consensus 13 ag~l~~l~~ai~~GADaVY~G~~~~~~R~~a-~------nfs~~~-l~e~i~~ah~~gkk~~V~~N~~~~~~~~~~~~~~ 84 (347)
T COG0826 13 AGNLEDLKAAIAAGADAVYIGEKEFGLRRRA-L------NFSVED-LAEAVELAHSAGKKVYVAVNTLLHNDELETLERY 84 (347)
T ss_pred CCCHHHHHHHHHcCCCEEEeCCccccccccc-c------cCCHHH-HHHHHHHHHHcCCeEEEEeccccccchhhHHHHH
Confidence 35566677888999999999665 1222221 1 123333 777777777767432111 233455555 556
Q ss_pred HHHHHHcCCCeeccChHHHHHh
Q psy10999 331 VVVAALLGADEIGLSTAPLITM 352 (447)
Q Consensus 331 v~kAlaLGAd~V~iGt~~L~al 352 (447)
+-++..+|+|+|.++=|.++.+
T Consensus 85 l~~l~e~GvDaviv~Dpg~i~l 106 (347)
T COG0826 85 LDRLVELGVDAVIVADPGLIML 106 (347)
T ss_pred HHHHHHcCCCEEEEcCHHHHHH
Confidence 6678889999999999998765
No 471
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=51.45 E-value=60 Score=32.31 Aligned_cols=71 Identities=14% Similarity=0.106 Sum_probs=47.5
Q ss_pred cHHHHHHHHHHCCCcEEEE-ecC-CCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEE-----cCCCCC--
Q psy10999 257 GVGVVASGVAKGKAEHIVI-SGH-DGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQA-----DGQIRT-- 327 (447)
Q Consensus 257 Gi~~~A~~a~~aGaD~I~V-sG~-~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~via-----dGGIrt-- 327 (447)
....+|..|.+.|||=|-+ ++- .||+ .|....+..+.+.+ .+||.+ .|.+..
T Consensus 9 ~s~~~a~~A~~~GAdRiELc~~L~~GGl------------TPS~g~i~~~~~~~-------~ipv~vMIRPR~gdF~Ys~ 69 (248)
T PRK11572 9 YSMECALTAQQAGADRIELCAAPKEGGL------------TPSLGVLKSVRERV-------TIPVHPIIRPRGGDFCYSD 69 (248)
T ss_pred CCHHHHHHHHHcCCCEEEEccCcCCCCc------------CCCHHHHHHHHHhc-------CCCeEEEEecCCCCCCCCH
Confidence 3456888999999999955 433 2332 26666677776653 355554 344432
Q ss_pred ------hHHHHHHHHcCCCeeccCh
Q psy10999 328 ------GFDVVVAALLGADEIGLST 346 (447)
Q Consensus 328 ------g~Dv~kAlaLGAd~V~iGt 346 (447)
-.|+..+..+|||+|.+|-
T Consensus 70 ~E~~~M~~di~~~~~~GadGvV~G~ 94 (248)
T PRK11572 70 GEFAAMLEDIATVRELGFPGLVTGV 94 (248)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEee
Confidence 3577888899999999983
No 472
>PRK13753 dihydropteroate synthase; Provisional
Probab=51.39 E-value=91 Score=31.57 Aligned_cols=68 Identities=9% Similarity=-0.053 Sum_probs=41.3
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHH---HHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVA---ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~---ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
+..+.+.|||+|+|.|...+-|+.+ ++.++=+. .+.+.+.+. .++|=+|- .++.-+.+|+..|
T Consensus 31 a~~m~~~GAdIIDIGgeSTrPga~~--------vs~eeE~~Rv~pvI~~l~~~----~~~ISIDT--~~~~va~~al~aG 96 (279)
T PRK13753 31 AIEMLRVGSDVVDVGPAASHPDARP--------VSPADEIRRIAPLLDALSDQ----MHRVSIDS--FQPETQRYALKRG 96 (279)
T ss_pred HHHHHHCCCcEEEECCCCCCCCCCc--------CCHHHHHHHHHHHHHHHHhC----CCcEEEEC--CCHHHHHHHHHcC
Confidence 4456789999999966554444322 23333344 333444432 35665664 4777777899999
Q ss_pred CCeec
Q psy10999 339 ADEIG 343 (447)
Q Consensus 339 Ad~V~ 343 (447)
||.+.
T Consensus 97 adiIN 101 (279)
T PRK13753 97 VGYLN 101 (279)
T ss_pred CCEEE
Confidence 98653
No 473
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=51.05 E-value=1.5e+02 Score=28.81 Aligned_cols=68 Identities=18% Similarity=0.083 Sum_probs=45.2
Q ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
+..|..+.+..+|.|+++ +++|-.+++.-+.+. ++. ....+|||+-..-.+-.|.+.++.+|
T Consensus 33 ~~~a~~~~~~~~dlviLD----------------~~lP~~dG~~~~~~i-R~~-~~~~~PIi~Lta~~~~~d~v~gl~~G 94 (229)
T COG0745 33 GEEALEAAREQPDLVLLD----------------LMLPDLDGLELCRRL-RAK-KGSGPPIIVLTARDDEEDRVLGLEAG 94 (229)
T ss_pred HHHHHHHHhcCCCEEEEE----------------CCCCCCCHHHHHHHH-Hhh-cCCCCcEEEEECCCcHHHHHHHHhCc
Confidence 345544443228888875 344555555544443 222 23578899988889999999999999
Q ss_pred CCeecc
Q psy10999 339 ADEIGL 344 (447)
Q Consensus 339 Ad~V~i 344 (447)
||-+..
T Consensus 95 ADDYl~ 100 (229)
T COG0745 95 ADDYLT 100 (229)
T ss_pred CCeeee
Confidence 987643
No 474
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=51.03 E-value=97 Score=30.63 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=46.2
Q ss_pred HHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCC-CC-ChHHH----
Q psy10999 258 VGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQ-IR-TGFDV---- 331 (447)
Q Consensus 258 i~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGG-Ir-tg~Dv---- 331 (447)
....|..+.+.|+|+|++-+..-|. .|-...+.+.++++.+ ..+.|+=+.-| +- .+..+
T Consensus 9 ~~~EA~~a~~~gaDiID~K~P~~Ga----------LGA~~~~vi~~i~~~~-----~~~~pvSAtiGDlp~~p~~~~~aa 73 (235)
T PF04476_consen 9 NVEEAEEALAGGADIIDLKNPAEGA----------LGALFPWVIREIVAAV-----PGRKPVSATIGDLPMKPGTASLAA 73 (235)
T ss_pred CHHHHHHHHhCCCCEEEccCCCCCC----------CCCCCHHHHHHHHHHc-----CCCCceEEEecCCCCCchHHHHHH
Confidence 3467888999999999999885442 2322345577887764 33566666443 32 12222
Q ss_pred HHHHHcCCCeeccCh
Q psy10999 332 VVAALLGADEIGLST 346 (447)
Q Consensus 332 ~kAlaLGAd~V~iGt 346 (447)
..+.+.|+|.|=+|-
T Consensus 74 ~~~a~~GvdyvKvGl 88 (235)
T PF04476_consen 74 LGAAATGVDYVKVGL 88 (235)
T ss_pred HHHHhcCCCEEEEec
Confidence 234457999888774
No 475
>PRK00208 thiG thiazole synthase; Reviewed
Probab=51.03 E-value=35 Score=33.94 Aligned_cols=40 Identities=10% Similarity=0.074 Sum_probs=28.9
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEe
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVIS 276 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~Vs 276 (447)
+.|+.+++. +++||++-. ..+...++..+.+.|+|+|.|.
T Consensus 165 ~~i~~i~e~-~~vpVIvea--GI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 165 YNLRIIIEQ-ADVPVIVDA--GIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred HHHHHHHHh-cCCeEEEeC--CCCCHHHHHHHHHcCCCEEEEC
Confidence 457777776 466765542 2244689999999999999983
No 476
>PRK13059 putative lipid kinase; Reviewed
Probab=51.00 E-value=1.4e+02 Score=29.89 Aligned_cols=82 Identities=16% Similarity=-0.001 Sum_probs=44.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
.|.+....|++. +..+.+......+-...+..+.+.+.|.|++.|.+|. +.++.+.|..
T Consensus 20 ~~~~i~~~l~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~GGDGT-------------------v~evv~gl~~ 78 (295)
T PRK13059 20 ELDKVIRIHQEK--GYLVVPYRISLEYDLKNAFKDIDESYKYILIAGGDGT-------------------VDNVVNAMKK 78 (295)
T ss_pred HHHHHHHHHHHC--CcEEEEEEccCcchHHHHHHHhhcCCCEEEEECCccH-------------------HHHHHHHHHh
Confidence 354455556655 3344433232222234455566778999999887763 4455555543
Q ss_pred cCCCCceEEE-EcCCCCChHHHHHHHHc
Q psy10999 311 NNLRSRVVLQ-ADGQIRTGFDVVVAALL 337 (447)
Q Consensus 311 ~glr~~v~vi-adGGIrtg~Dv~kAlaL 337 (447)
.+. ++||- .-.| |+-|.++.|-+
T Consensus 79 ~~~--~~~lgviP~G--TgNdfAr~lgi 102 (295)
T PRK13059 79 LNI--DLPIGILPVG--TANDFAKFLGM 102 (295)
T ss_pred cCC--CCcEEEECCC--CHhHHHHHhCC
Confidence 222 34432 2233 88888887743
No 477
>cd00622 PLPDE_III_ODC Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Ornithine Decarboxylase. This subfamily is composed mainly of eukaryotic ornithine decarboxylases (ODC, EC 4.1.1.17) and ODC-like enzymes from prokaryotes represented by Vibrio vulnificus LysineOrnithine decarboxylase. These are fold type III PLP-dependent enzymes that differ from most bacterial ODCs which are fold type I PLP-dependent enzymes. ODC participates in the formation of putrescine by catalyzing the decarboxylation of ornithine, the first step in polyamine biosynthesis. Members of this subfamily contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Homodimer formation and the presence of the PLP cofactor are required for catalytic activity. Also members of this su
Probab=50.95 E-value=1.4e+02 Score=30.58 Aligned_cols=92 Identities=18% Similarity=0.040 Sum_probs=60.8
Q ss_pred CCHHHHHHHHHHHHHhCCCCceE--EEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHH
Q psy10999 227 YSIEDLAELIYDLKCANPNARIS--VKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAET 304 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~p~~pI~--VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev 304 (447)
++...+.+.++.+|+..|+..+. || .......++.+.+.|+ .+.|+. +.|+
T Consensus 7 id~~~l~~N~~~~~~~~~~~~~~~avK---AN~~~~v~~~l~~~G~-g~~vaS-----------------------~~E~ 59 (362)
T cd00622 7 VDLGDVVRKYRRWKKALPRVRPFYAVK---CNPDPAVLRTLAALGA-GFDCAS-----------------------KGEI 59 (362)
T ss_pred EeHHHHHHHHHHHHHHCCCCeEEEEec---cCCCHHHHHHHHHcCC-CeEecC-----------------------HHHH
Confidence 45667888999999987765555 78 3345566677777777 555532 2233
Q ss_pred HHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChH
Q psy10999 305 HQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA 347 (447)
Q Consensus 305 ~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~ 347 (447)
... .+.|.+. -.|+..|...+..++..|+..|...+.+.+.
T Consensus 60 ~~~-~~~G~~~-~~i~~~~~~k~~~~l~~a~~~gi~~~~~ds~ 100 (362)
T cd00622 60 ELV-LGLGVSP-ERIIFANPCKSISDIRYAAELGVRLFTFDSE 100 (362)
T ss_pred HHH-HHcCCCc-ceEEEcCCCCCHHHHHHHHHcCCCEEEECCH
Confidence 332 2345442 2477778899999999999999876665653
No 478
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=50.83 E-value=44 Score=36.73 Aligned_cols=62 Identities=15% Similarity=0.258 Sum_probs=44.0
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEE--EecCCCCCCCccc
Q psy10999 225 DIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIV--ISGHDGGTGASSW 287 (447)
Q Consensus 225 ~~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~--VsG~~GGtg~a~~ 287 (447)
..-.+++..++|.++++.. ++||.+=.--..|.+. -+..+.++|||.|. |.|-|+|+|.++.
T Consensus 182 G~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlGERaGNa~l 246 (524)
T PRK12344 182 GGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYGERCGNANL 246 (524)
T ss_pred CCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccccccCcCH
Confidence 3456788889999999876 5677665333446654 34567899999995 5588888877654
No 479
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=50.53 E-value=38 Score=37.83 Aligned_cols=59 Identities=15% Similarity=0.058 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEEE--ecCCCCCCCc
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIVI--SGHDGGTGAS 285 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~V--sG~~GGtg~a 285 (447)
.-.+++..+++..||+.++ .||.+=.-...|.+. ....|.++|||.|+. +|.++|+|..
T Consensus 179 ~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~~agn~ 240 (592)
T PRK09282 179 LLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAFGTSQP 240 (592)
T ss_pred CcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCCCcCCH
Confidence 3456778899999999874 787776443456654 345688999999964 5666666543
No 480
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=50.53 E-value=1.9e+02 Score=27.06 Aligned_cols=89 Identities=12% Similarity=0.040 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
+.++++++..+ .++.|-++. .+.......+.++|+|+|+|-+. . + ....+..+..+..|
T Consensus 51 ~~~~~i~~~~~-~~~~v~l~v-~d~~~~i~~~~~~g~d~v~vh~~---~-------------~--~~~~~~~~~~~~~~- 109 (220)
T PRK05581 51 PVVEAIRKVTK-LPLDVHLMV-ENPDRYVPDFAKAGADIITFHVE---A-------------S--EHIHRLLQLIKSAG- 109 (220)
T ss_pred HHHHHHHhcCC-CcEEEEeee-CCHHHHHHHHHHcCCCEEEEeec---c-------------c--hhHHHHHHHHHHcC-
Confidence 56788887654 354343332 25555556677999999988542 1 0 11122334444444
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
+.+..+=+-.|..+..+++.-++|.+.+++
T Consensus 110 ---~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 110 ---IKAGLVLNPATPLEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred ---CEEEEEECCCCCHHHHHHHHhhCCEEEEEE
Confidence 334444456677888899888899888775
No 481
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=50.51 E-value=85 Score=31.76 Aligned_cols=68 Identities=21% Similarity=0.156 Sum_probs=42.4
Q ss_pred HHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHH---HHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 262 ASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAET---HQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 262 A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev---~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
|....+.|||+|+|-|...+-|+. .++.++-+.++ .+.+.+. -++||-+|- .++.-+.+|+..|
T Consensus 44 a~~~~~~GAdIIDIGgeSTrPg~~--------~v~~eeE~~Rv~pvI~~l~~~---~~~~ISIDT--~~~~va~~AL~~G 110 (282)
T PRK11613 44 ANLMINAGATIIDVGGESTRPGAA--------EVSVEEELDRVIPVVEAIAQR---FEVWISVDT--SKPEVIRESAKAG 110 (282)
T ss_pred HHHHHHCCCcEEEECCCCCCCCCC--------CCCHHHHHHHHHHHHHHHHhc---CCCeEEEEC--CCHHHHHHHHHcC
Confidence 445578999999996554433322 23344444443 3444321 147777775 4777788899999
Q ss_pred CCee
Q psy10999 339 ADEI 342 (447)
Q Consensus 339 Ad~V 342 (447)
|+.+
T Consensus 111 adiI 114 (282)
T PRK11613 111 AHII 114 (282)
T ss_pred CCEE
Confidence 9987
No 482
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=50.50 E-value=48 Score=35.39 Aligned_cols=56 Identities=20% Similarity=0.232 Sum_probs=39.5
Q ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeeeccHHHH-HHHHHHCCCcEEE--EecCCCCCCC
Q psy10999 228 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVV-ASGVAKGKAEHIV--ISGHDGGTGA 284 (447)
Q Consensus 228 s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~-A~~a~~aGaD~I~--VsG~~GGtg~ 284 (447)
++..-.++|..||+..+ +||.+---...|+..- -.++.++|||+|+ +|--.|||+-
T Consensus 183 tP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~gtsq 241 (472)
T COG5016 183 TPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSGGTSQ 241 (472)
T ss_pred ChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHHHhCcchhhhhhccccCCCCC
Confidence 44455688999999874 7887775556677654 3568899999996 4455566643
No 483
>PRK06739 pyruvate kinase; Validated
Probab=50.36 E-value=2.2e+02 Score=29.79 Aligned_cols=102 Identities=17% Similarity=0.134 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHHHHh-CCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHH
Q psy10999 227 YSIEDLAELIYDLKCA-NPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETH 305 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~-~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~ 305 (447)
.+.+|+.+.-+-|++. ....+|+.|+=...|+...-.-+. -+|+|.|.=.+= ..-+|.+ -++.++
T Consensus 188 r~~~Dv~~~r~~l~~~g~~~~~IiaKIE~~~av~nl~eI~~--~sDgimVARGDL-----------gve~~~e-~vp~~Q 253 (352)
T PRK06739 188 RKPSHIKEIRDFIQQYKETSPNLIAKIETMEAIENFQDICK--EADGIMIARGDL-----------GVELPYQ-FIPLLQ 253 (352)
T ss_pred CCHHHHHHHHHHHHHcCCCCCcEEEEECCHHHHHHHHHHHH--hcCEEEEECccc-----------ccccCHH-HHHHHH
Confidence 4556653322223332 235688999643233332222222 259999952211 1123432 344443
Q ss_pred ----HHHHhcCCCCceEEEEcCCCCC------------hHHHHHHHHcCCCeeccCh
Q psy10999 306 ----QVLALNNLRSRVVLQADGQIRT------------GFDVVVAALLGADEIGLST 346 (447)
Q Consensus 306 ----~~l~~~glr~~v~viadGGIrt------------g~Dv~kAlaLGAd~V~iGt 346 (447)
+.+..+ ..|+|++..+-. -.||+-|..-|||+|++..
T Consensus 254 k~Ii~~c~~~----gkPvIvATqmLeSM~~~p~PTRAEvsDVanaV~dG~D~vMLS~ 306 (352)
T PRK06739 254 KMMIQECNRT----NTYVITATQMLQSMVDHSIPTRAEVTDVFQAVLDGTNAVMLSA 306 (352)
T ss_pred HHHHHHHHHh----CCCEEEEcchHHhhccCCCCChHHHHHHHHHHHhCCcEEEEcc
Confidence 344433 478998777643 3699999999999998863
No 484
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=50.00 E-value=1.6e+02 Score=29.24 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=51.6
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHH---HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGV---VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~---~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
++++.+... ++||++|-.......+ .+..+.+.|.+-|++--. |-+...|.. .. ...+.+++...+..
T Consensus 123 ~LL~~~a~~--gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~r-G~s~y~~~~-~~---~~dl~~i~~lk~~~-- 193 (260)
T TIGR01361 123 ELLKEVGKQ--GKPVLLKRGMGNTIEEWLYAAEYILSSGNGNVILCER-GIRTFEKAT-RN---TLDLSAVPVLKKET-- 193 (260)
T ss_pred HHHHHHhcC--CCcEEEeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEC-CCCCCCCCC-cC---CcCHHHHHHHHHhh--
Confidence 345555443 7799999542111222 234456678854544211 221110100 11 13445555555431
Q ss_pred cCCCCceEEEEcCCCCCh------HHHHHHHHcCCCeeccChHH
Q psy10999 311 NNLRSRVVLQADGQIRTG------FDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg------~Dv~kAlaLGAd~V~iGt~~ 348 (447)
.+||+.|..=..| .-...|+++||+++++=+.|
T Consensus 194 -----~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~ 232 (260)
T TIGR01361 194 -----HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP 232 (260)
T ss_pred -----CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence 4899994443333 22347899999988776644
No 485
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=49.38 E-value=96 Score=29.69 Aligned_cols=64 Identities=17% Similarity=0.094 Sum_probs=42.8
Q ss_pred HHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcC
Q psy10999 259 GVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLG 338 (447)
Q Consensus 259 ~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLG 338 (447)
...++.+.+.|...|-|.=.. .-+..++..+.+.. +++ ++-.|-|.|..++-+|+.+|
T Consensus 23 ~~~~~al~~gGi~~iEiT~~t---------------~~a~~~I~~l~~~~------p~~-~vGAGTV~~~e~a~~a~~aG 80 (196)
T PF01081_consen 23 VPIAEALIEGGIRAIEITLRT---------------PNALEAIEALRKEF------PDL-LVGAGTVLTAEQAEAAIAAG 80 (196)
T ss_dssp HHHHHHHHHTT--EEEEETTS---------------TTHHHHHHHHHHHH------TTS-EEEEES--SHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCCEEEEecCC---------------ccHHHHHHHHHHHC------CCC-eeEEEeccCHHHHHHHHHcC
Confidence 456778889999999886431 12446666665543 244 78999999999999999999
Q ss_pred CCeecc
Q psy10999 339 ADEIGL 344 (447)
Q Consensus 339 Ad~V~i 344 (447)
|+++..
T Consensus 81 A~FivS 86 (196)
T PF01081_consen 81 AQFIVS 86 (196)
T ss_dssp -SEEEE
T ss_pred CCEEEC
Confidence 998753
No 486
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=49.35 E-value=49 Score=34.64 Aligned_cols=60 Identities=20% Similarity=0.247 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHHHHhCCCCceEEEEeeeccHHH-HHHHHHHCCCcEEE--EecCCCCCCCcc
Q psy10999 226 IYSIEDLAELIYDLKCANPNARISVKLVSEVGVGV-VASGVAKGKAEHIV--ISGHDGGTGASS 286 (447)
Q Consensus 226 ~~s~edl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~~-~A~~a~~aGaD~I~--VsG~~GGtg~a~ 286 (447)
.-.+++..++|..+++.+ ++||.+=.--..|.+. -+..+.++||+.|. +.|-|+++|.++
T Consensus 170 ~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGeraGNa~ 232 (378)
T PRK11858 170 ILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGERAGNAA 232 (378)
T ss_pred CCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccccccCcc
Confidence 345778889999999887 6787776443456654 34567899999995 457777766554
No 487
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=48.95 E-value=1e+02 Score=28.68 Aligned_cols=22 Identities=27% Similarity=0.290 Sum_probs=19.4
Q ss_pred CCChHHHHHHHHcCCCeeccCh
Q psy10999 325 IRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 325 Irtg~Dv~kAlaLGAd~V~iGt 346 (447)
+.|..++.+|..+|||.|.++.
T Consensus 111 ~~t~~e~~~a~~~gaD~v~~~~ 132 (212)
T PRK00043 111 THTLEEAAAALAAGADYVGVGP 132 (212)
T ss_pred CCCHHHHHHHhHcCCCEEEECC
Confidence 4588999999999999999884
No 488
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=48.86 E-value=1.1e+02 Score=30.30 Aligned_cols=71 Identities=8% Similarity=-0.016 Sum_probs=46.2
Q ss_pred cHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHH
Q psy10999 257 GVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAAL 336 (447)
Q Consensus 257 Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAla 336 (447)
+....++.+..+|.|+|+|+.--|. . ....+..+..+....|+. .-|.+.. .+...+.++|-
T Consensus 21 ~sp~~~e~~a~~G~D~v~iD~EHg~-------------~-~~~~~~~~~~a~~~~g~~--~~VRvp~--~~~~~i~r~LD 82 (249)
T TIGR03239 21 GNPITTEVLGLAGFDWLLLDGEHAP-------------N-DVLTFIPQLMALKGSASA--PVVRPPW--NEPVIIKRLLD 82 (249)
T ss_pred CCcHHHHHHHhcCCCEEEEecccCC-------------C-CHHHHHHHHHHHhhcCCC--cEEECCC--CCHHHHHHHhc
Confidence 4567788888999999999975332 1 223344444455444422 2233333 37889999999
Q ss_pred cCCCeeccC
Q psy10999 337 LGADEIGLS 345 (447)
Q Consensus 337 LGAd~V~iG 345 (447)
.||++|++=
T Consensus 83 ~Ga~gIivP 91 (249)
T TIGR03239 83 IGFYNFLIP 91 (249)
T ss_pred CCCCEEEec
Confidence 999999763
No 489
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=48.67 E-value=1.3e+02 Score=28.72 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=0.0
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCC---CCCCCccccccccCCCChHHHHHHHHHHHHh
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD---GGTGASSWTGIKNAGLPWELGVAETHQVLAL 310 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~---GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~ 310 (447)
+.+..||+..+ .+|+--+-................+|++.++... |||| .-..|... ...+
T Consensus 90 ~~~~~l~~~~~-~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG---------~~~dw~~l----~~~~-- 153 (210)
T PRK01222 90 EFCRQLKRRYG-LPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTG---------KTFDWSLL----PAGL-- 153 (210)
T ss_pred HHHHHHHhhcC-CcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCC---------CccchHHh----hhcc--
Q ss_pred cCCCCceEEEEcCCCCChHHHHHHHHc-CCCeeccChHH
Q psy10999 311 NNLRSRVVLQADGQIRTGFDVVVAALL-GADEIGLSTAP 348 (447)
Q Consensus 311 ~glr~~v~viadGGIrtg~Dv~kAlaL-GAd~V~iGt~~ 348 (447)
..|++.+||| ++..|..++.. +..+|=+.+.+
T Consensus 154 -----~~p~~LAGGi-~peNv~~ai~~~~p~gvDvsSgv 186 (210)
T PRK01222 154 -----AKPWILAGGL-NPDNVAEAIRQVRPYGVDVSSGV 186 (210)
T ss_pred -----CCCEEEECCC-CHHHHHHHHHhcCCCEEEecCce
No 490
>PRK06852 aldolase; Validated
Probab=48.10 E-value=49 Score=33.89 Aligned_cols=93 Identities=19% Similarity=0.086 Sum_probs=54.7
Q ss_pred HHHhCCCCceEEEEeeeccH------------HHHHHHHHHCC------CcEEEEecCCCCCCCccccccccCCCChHHH
Q psy10999 239 LKCANPNARISVKLVSEVGV------------GVVASGVAKGK------AEHIVISGHDGGTGASSWTGIKNAGLPWELG 300 (447)
Q Consensus 239 Lr~~~p~~pI~VKlv~~~Gi------------~~~A~~a~~aG------aD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~ 300 (447)
....++++|++||+-+...+ ....+.|.+.| ||+|.+.=.=|... . .-.+.-
T Consensus 86 ~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVeeAvrlG~~~~~~AdAV~v~v~~Gs~~-------E---~~ml~~ 155 (304)
T PRK06852 86 YGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQVVEFKENSGLNILGVGYTIYLGSEY-------E---SEMLSE 155 (304)
T ss_pred hccccCCCcEEEEECCCCCcCCcccCCccccceecHHHHHhcCCccCCCceEEEEEEecCCHH-------H---HHHHHH
Confidence 33344578899997652111 11245677777 88998876544311 0 123344
Q ss_pred HHHHHHHHHhcCCCCceEEEE----cC-CCCChHH-------HHHHHHcCCCeeccC
Q psy10999 301 VAETHQVLALNNLRSRVVLQA----DG-QIRTGFD-------VVVAALLGADEIGLS 345 (447)
Q Consensus 301 L~ev~~~l~~~glr~~v~via----dG-GIrtg~D-------v~kAlaLGAd~V~iG 345 (447)
|.++.+.+.++| +|+++ -| .|.+..| +-.|..||||.|=+-
T Consensus 156 l~~v~~ea~~~G----lPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGADIVKv~ 208 (304)
T PRK06852 156 AAQIIYEAHKHG----LIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGADFVKVN 208 (304)
T ss_pred HHHHHHHHHHhC----CcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCCEEEec
Confidence 667777777666 67775 33 3455544 346778999987544
No 491
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=48.07 E-value=1.4e+02 Score=30.98 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=52.4
Q ss_pred HHHHHHHhCCCCceEEEEeeeccHHH---HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhc
Q psy10999 235 LIYDLKCANPNARISVKLVSEVGVGV---VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALN 311 (447)
Q Consensus 235 ~I~~Lr~~~p~~pI~VKlv~~~Gi~~---~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~ 311 (447)
+++.+-.. ++||++|-....-+.+ .++.+...|-+-|++--.|..|. .+.. ..+ ..+.+++...+.
T Consensus 192 LL~~va~~--~kPViLk~G~~~ti~E~l~A~e~i~~~GN~~viL~erG~~tf-~~~~-~~~---ldl~ai~~lk~~---- 260 (335)
T PRK08673 192 LLKEVGKT--NKPVLLKRGMSATIEEWLMAAEYILAEGNPNVILCERGIRTF-ETAT-RNT---LDLSAVPVIKKL---- 260 (335)
T ss_pred HHHHHHcC--CCcEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCC-CCcC-hhh---hhHHHHHHHHHh----
Confidence 44444443 6799999543211222 33455567876555533322232 1100 011 122334433332
Q ss_pred CCCCceEEEEcCCCCChH------HHHHHHHcCCCeeccChHH
Q psy10999 312 NLRSRVVLQADGQIRTGF------DVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 312 glr~~v~viadGGIrtg~------Dv~kAlaLGAd~V~iGt~~ 348 (447)
-..|||+|-.=.+|. -...|+++|||++.+=..+
T Consensus 261 ---~~lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~ 300 (335)
T PRK08673 261 ---THLPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHP 300 (335)
T ss_pred ---cCCCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecC
Confidence 148998876655553 3468899999988877654
No 492
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=48.02 E-value=2.9e+02 Score=27.38 Aligned_cols=95 Identities=16% Similarity=0.115 Sum_probs=54.6
Q ss_pred HHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCC-----CCCCCccccccccCCCChHHHHHHHHHHHHhcCC
Q psy10999 239 LKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD-----GGTGASSWTGIKNAGLPWELGVAETHQVLALNNL 313 (447)
Q Consensus 239 Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~-----GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~gl 313 (447)
++..|....+++.+=+..|+....+.+.--|+|++.+.-.+ |..+ +..+.+...++.++..+++++|+
T Consensus 139 ~~~an~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG~~~-------~~~~~~v~~a~~~v~~aa~~~G~ 211 (256)
T PRK10558 139 FAQSNKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALGHLG-------NASHPDVQKAIQHIFARAKAHGK 211 (256)
T ss_pred HHHhccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcCCCC-------CCCCHHHHHHHHHHHHHHHHcCC
Confidence 34444444555553222233333333333589999873221 1100 01123466777888888887773
Q ss_pred CCceEEEEcCCCCChHHHHHHHHcCCCeeccCh
Q psy10999 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLST 346 (447)
Q Consensus 314 r~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt 346 (447)
++-. -..++.++.+.+.+|++.+.+|.
T Consensus 212 ----~~g~--~~~~~~~~~~~~~~G~~~v~~~~ 238 (256)
T PRK10558 212 ----PSGI--LAPVEADARRYLEWGATFVAVGS 238 (256)
T ss_pred ----ceEE--cCCCHHHHHHHHHcCCCEEEEch
Confidence 3211 23678899999999999999987
No 493
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=47.81 E-value=2.4e+02 Score=28.19 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=24.0
Q ss_pred ceEEEEcCCCCCh------HHHHHHHHcCCCeeccChHH
Q psy10999 316 RVVLQADGQIRTG------FDVVVAALLGADEIGLSTAP 348 (447)
Q Consensus 316 ~v~viadGGIrtg------~Dv~kAlaLGAd~V~iGt~~ 348 (447)
.+||++|-.=.+| .....|+++||+++++=+.+
T Consensus 196 ~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~ 234 (266)
T PRK13398 196 HLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP 234 (266)
T ss_pred CCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence 4889996544444 55678999999988877644
No 494
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=47.48 E-value=77 Score=33.23 Aligned_cols=74 Identities=18% Similarity=0.074 Sum_probs=47.3
Q ss_pred HHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChHHHHHHHHHHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCC
Q psy10999 261 VASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGAD 340 (447)
Q Consensus 261 ~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~L~ev~~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd 340 (447)
.|+.+.+.+.|++.|.|-..|- .. .-....|..+... +..+.|..+-| +.++.||+.++++|+|
T Consensus 200 sa~~l~~~~~~G~aIGGl~~ge--~~--------~~~~~~v~~~~~~-----lp~~kPryl~G-vg~P~~i~~~v~~GvD 263 (366)
T PRK00112 200 SAKGLVEIDFDGYAIGGLSVGE--PK--------EEMYRILEHTAPL-----LPEDKPRYLMG-VGTPEDLVEGVARGVD 263 (366)
T ss_pred HHHHHHhCCCceeEeccccCCC--CH--------HHHHHHHHHHHhh-----CCCcCCeEecC-CCCHHHHHHHHHcCCC
Confidence 3456778899999997753331 00 0112234444444 34466777766 9999999999999999
Q ss_pred eeccChHHHH
Q psy10999 341 EIGLSTAPLI 350 (447)
Q Consensus 341 ~V~iGt~~L~ 350 (447)
.+=.--|...
T Consensus 264 ~FD~~~p~r~ 273 (366)
T PRK00112 264 MFDCVMPTRN 273 (366)
T ss_pred EEeeCCcccc
Confidence 7655444443
No 495
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=47.47 E-value=27 Score=33.68 Aligned_cols=52 Identities=25% Similarity=0.291 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHh-cCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHH
Q psy10999 298 ELGVAETHQVLAL-NNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349 (447)
Q Consensus 298 ~~~L~ev~~~l~~-~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L 349 (447)
..-..++++.++. ..+.++++|+.-|++..+.+...+...+.|++.+|++.|
T Consensus 150 ~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl 202 (205)
T TIGR00419 150 PAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSL 202 (205)
T ss_pred HHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeee
Confidence 3444556655542 122357999999999999999999999999999999765
No 496
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=47.38 E-value=71 Score=32.26 Aligned_cols=80 Identities=21% Similarity=0.199 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHhCCCCceEEEEeeeccHH---HHHHH---HHHC----CCcEEEEecCCCCCCCccccccccCCCChHHH
Q psy10999 231 DLAELIYDLKCANPNARISVKLVSEVGVG---VVASG---VAKG----KAEHIVISGHDGGTGASSWTGIKNAGLPWELG 300 (447)
Q Consensus 231 dl~~~I~~Lr~~~p~~pI~VKlv~~~Gi~---~~A~~---a~~a----GaD~I~VsG~~GGtg~a~~~~~~~~G~p~~~~ 300 (447)
.+.|++..++..||.+.|.+==+..-|-. .++.. +.+. .+|+|+| +.|||+ ..|...=..+.
T Consensus 27 a~~D~~~~~~~r~~~~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii-~RGGGs-------~eDL~~FN~e~ 98 (319)
T PF02601_consen 27 AIQDFLRTLKRRNPIVEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIII-IRGGGS-------IEDLWAFNDEE 98 (319)
T ss_pred HHHHHHHHHHHhCCCcEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEE-ecCCCC-------hHHhcccChHH
Confidence 45677888888888755544322211222 22222 3333 4899999 565553 22322223344
Q ss_pred HHHHHHHHHhcCCCCceEEEEcCCC
Q psy10999 301 VAETHQVLALNNLRSRVVLQADGQI 325 (447)
Q Consensus 301 L~ev~~~l~~~glr~~v~viadGGI 325 (447)
|.++.-. ..+|||..=|=
T Consensus 99 varai~~-------~~~PvisaIGH 116 (319)
T PF02601_consen 99 VARAIAA-------SPIPVISAIGH 116 (319)
T ss_pred HHHHHHh-------CCCCEEEecCC
Confidence 4444332 26998875443
No 497
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=47.35 E-value=2.6e+02 Score=29.66 Aligned_cols=106 Identities=17% Similarity=0.085 Sum_probs=65.3
Q ss_pred HHHHHHHHhCCCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCC--------CCCccccccccCCCChHHHHHHHH
Q psy10999 234 ELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGG--------TGASSWTGIKNAGLPWELGVAETH 305 (447)
Q Consensus 234 ~~I~~Lr~~~p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GG--------tg~a~~~~~~~~G~p~~~~L~ev~ 305 (447)
+.++.|... |+++-+=++- ....|..++++|+++|-. +=|+ .|..+.. ...-|....+.++.
T Consensus 145 ~A~~~L~~~--GI~~n~TlvF---S~~QA~aaaeAGa~~ISP--fVgRi~dw~~~~~g~~~~~---~~~dpGv~~v~~i~ 214 (391)
T PRK12309 145 KAAEVLEKE--GIHCNLTLLF---GFHQAIACAEAGVTLISP--FVGRILDWYKKETGRDSYP---GAEDPGVQSVTQIY 214 (391)
T ss_pred HHHHHHHHC--CCceeeeeec---CHHHHHHHHHcCCCEEEe--ecchhhhhhhhccCCCccc---cccchHHHHHHHHH
Confidence 345555443 4455444332 234567788999998843 1122 1100000 11235667788888
Q ss_pred HHHHhcCCCCceEEEEcCCCCChHHHHHHHHcCCCeeccChHHHHHhcc
Q psy10999 306 QVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354 (447)
Q Consensus 306 ~~l~~~glr~~v~viadGGIrtg~Dv~kAlaLGAd~V~iGt~~L~algc 354 (447)
+..+.+|.. +.|....+|+..+|.. ..|+|.+-+.-..|-.+..
T Consensus 215 ~~~~~~~~~---T~Im~ASfRn~~~v~~--laG~d~~Ti~p~ll~~L~~ 258 (391)
T PRK12309 215 NYYKKFGYK---TEVMGASFRNIGEIIE--LAGCDLLTISPKLLEQLRS 258 (391)
T ss_pred HHHHhcCCC---cEEEecccCCHHHHHH--HHCCCeeeCCHHHHHHHHh
Confidence 888887753 3455667899999987 4799999888887776543
No 498
>COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]
Probab=47.14 E-value=24 Score=33.25 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=27.1
Q ss_pred CceEEEEcCCCCChHHHHHHHHcCCCeecc
Q psy10999 315 SRVVLQADGQIRTGFDVVVAALLGADEIGL 344 (447)
Q Consensus 315 ~~v~viadGGIrtg~Dv~kAlaLGAd~V~i 344 (447)
-++|||+.|=|+|-.||-.|+..||-+|--
T Consensus 143 t~~piIAGGLi~t~Eev~~Al~aGA~avST 172 (181)
T COG1954 143 THIPIIAGGLIETEEEVREALKAGAVAVST 172 (181)
T ss_pred cCCCEEeccccccHHHHHHHHHhCcEEEee
Confidence 379999999999999999999999988753
No 499
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=47.11 E-value=1.4e+02 Score=31.76 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=22.0
Q ss_pred eEEEEeeeccHH-HHHHHHHHCCCcEEEEecCCCC
Q psy10999 248 ISVKLVSEVGVG-VVASGVAKGKAEHIVISGHDGG 281 (447)
Q Consensus 248 I~VKlv~~~Gi~-~~A~~a~~aGaD~I~VsG~~GG 281 (447)
.++|+.+ |.. .....+.+.|+++|++.|.|.|
T Consensus 279 ~ll~~~p--G~d~~~l~~~~~~g~~GiVleg~G~G 311 (404)
T TIGR02153 279 ALVKFYP--GISPEIIEFLVDKGYKGIVIEGTGLG 311 (404)
T ss_pred EEEEeCC--CCCHHHHHHHHhCCCCEEEEeeECCC
Confidence 4567665 443 2334566889999999999665
No 500
>PRK09206 pyruvate kinase; Provisional
Probab=47.11 E-value=2.5e+02 Score=30.59 Aligned_cols=103 Identities=17% Similarity=0.151 Sum_probs=57.4
Q ss_pred CCHHHHHHHHHHHHHhC-CCCceEEEEeeeccHHHHHHHHHHCCCcEEEEecCCCCCCCccccccccCCCChH-HHHHHH
Q psy10999 227 YSIEDLAELIYDLKCAN-PNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWE-LGVAET 304 (447)
Q Consensus 227 ~s~edl~~~I~~Lr~~~-p~~pI~VKlv~~~Gi~~~A~~a~~aGaD~I~VsG~~GGtg~a~~~~~~~~G~p~~-~~L~ev 304 (447)
.+.+|+.+.-+.+.+.+ ....|+.|+=...|+...-+ ..+. +|+|.|. ++--+ -..|.+-. ....++
T Consensus 195 r~~~Dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nlde-Il~~-~DgImVa----RGDLg-----velg~e~vp~~qk~i 263 (470)
T PRK09206 195 RKRSDVLEIREHLKAHGGENIQIISKIENQEGLNNFDE-ILEA-SDGIMVA----RGDLG-----VEIPVEEVIFAQKMM 263 (470)
T ss_pred CCHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHH-HHHh-CCEEEEC----cchhh-----hhcCHHHHHHHHHHH
Confidence 45566544333344433 35678888533233432222 2233 9999993 32110 11222211 223344
Q ss_pred HHHHHhcCCCCceEEEEcCCCCC------------hHHHHHHHHcCCCeecc
Q psy10999 305 HQVLALNNLRSRVVLQADGQIRT------------GFDVVVAALLGADEIGL 344 (447)
Q Consensus 305 ~~~l~~~glr~~v~viadGGIrt------------g~Dv~kAlaLGAd~V~i 344 (447)
.+.+.++| .|+|++..+-. -.||+-|+.-|||+|++
T Consensus 264 i~~~~~~g----kpvI~ATqmLeSM~~np~PTRAEvsDVanav~dG~DavML 311 (470)
T PRK09206 264 IEKCNRAR----KVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVML 311 (470)
T ss_pred HHHHHHcC----CCEEEEchhHHHHhhCCCCCchhhHHHHHHhhhCCcEEEE
Confidence 45555544 78998877643 46999999999999988
Done!