RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10999
(447 letters)
>gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase.
This family represents a region of the glutamate
synthase protein. This region is expressed as a separate
subunit in the glutamate synthase alpha subunit from
archaebacteria, or part of a large multidomain enzyme in
other organisms. The aligned region of these proteins
contains a putative FMN binding site and Fe-S cluster.
Length = 367
Score = 541 bits (1396), Expect = 0.0
Identities = 220/375 (58%), Positives = 254/375 (67%), Gaps = 31/375 (8%)
Query: 26 QEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATGA 85
Q+A + +YD++RE E V LR L+F + P+ I EVEPA EI RF TGA
Sbjct: 12 QKAVQVESYPSYDKYREPLNERVPIGALRDLLEFDYAEDPIPIEEVEPALEIKTRFCTGA 71
Query: 86 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQGKLYPKTYC 145
MS+G++S EAH LAKAMN++G KSNTGEGGE+PER + D AIKQ
Sbjct: 72 MSYGALSEEAHEALAKAMNRLGTKSNTGEGGEDPERLKYAAD----GAIKQ--------- 118
Query: 146 FLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDI 205
VASGRFGVT YL +AD ++IK+AQGAKPGEGG LPG KV+ +I
Sbjct: 119 ----------------VASGRFGVTPEYLNNADAIEIKIAQGAKPGEGGHLPGEKVSPEI 162
Query: 206 ASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGV 265
A R S PGVGLISPPPHHDIYSIEDLA+LIYDLK NP A ISVKLVS GVG +A+GV
Sbjct: 163 ARIRGSPPGVGLISPPPHHDIYSIEDLAQLIYDLKEINPKAPISVKLVSGHGVGTIAAGV 222
Query: 266 AKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQI 325
AK A+ I+I GHDGGTGAS T IK+AGLPWEL +AE HQ L N LR RV L ADG +
Sbjct: 223 AKAGADIILIDGHDGGTGASPKTSIKHAGLPWELALAEVHQTLVENGLRDRVSLIADGGL 282
Query: 326 RTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRK--KFAGK 383
RTG DV AA LGAD + + TA LI +GC M R CH NTCPVG+ATQDPELRK F G
Sbjct: 283 RTGADVAKAAALGADAVYIGTAALIALGCIMCRVCHTNTCPVGVATQDPELRKRLDFEGA 342
Query: 384 PEHVINYLFMLAEEV 398
PE V+NY LAEEV
Sbjct: 343 PERVVNYFRFLAEEV 357
>gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport
and metabolism].
Length = 485
Score = 531 bits (1369), Expect = 0.0
Identities = 219/350 (62%), Positives = 251/350 (71%), Gaps = 33/350 (9%)
Query: 52 TLRGQLDFVT-HDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKS 110
TLR LDF+ KP+ I EVEP E+ KRF TGAMSFG++S EAH LA+AMN+IG KS
Sbjct: 139 TLRDLLDFIADGSKPIPIEEVEPVLELKKRFVTGAMSFGALSKEAHEALARAMNRIGTKS 198
Query: 111 NTGEGGENPERYLSSGDENQRSAIKQGKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVT 170
NTGEGGE+PERY E+ RSAIKQ VASGRFGVT
Sbjct: 199 NTGEGGEDPERY-----EDGRSAIKQ-------------------------VASGRFGVT 228
Query: 171 SSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIE 230
YLA+AD ++IK+AQGAKPGEGG+LPG KVT +IA TR S PGVGLISPPPHHDIYSIE
Sbjct: 229 PEYLANADAIEIKIAQGAKPGEGGQLPGEKVTPEIAKTRGSPPGVGLISPPPHHDIYSIE 288
Query: 231 DLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGI 290
DLA+LI DLK ANP A+ISVKLV+E GVG +A+GVAK A+ I I G DGGTGAS T I
Sbjct: 289 DLAQLIKDLKEANPWAKISVKLVAEHGVGTIAAGVAKAGADVITIDGADGGTGASPLTSI 348
Query: 291 KNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350
+AG+PWELG+AETHQ L LN LR +V L ADG +RTG DV AA LGAD +G TA L+
Sbjct: 349 DHAGIPWELGLAETHQTLVLNGLRDKVKLIADGGLRTGADVAKAAALGADAVGFGTAALV 408
Query: 351 TMGCTMMRKCHLNTCPVGIATQDPELRKK--FAGKPEHVINYLFMLAEEV 398
+GC M R CH TCPVGIATQDPELRK+ GKPE VINY +AEE+
Sbjct: 409 ALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFVAEEL 458
>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain.
GltS is a complex iron-sulfur flavoprotein that
catalyzes the reductive synthesis of L-glutamate from
2-oxoglutarate and L-glutamine via intramolecular
channelling of ammonia, a reaction in the plant, yeast
and bacterial pathway for ammonia assimilation. It is a
multifunctional enzyme that functions through three
distinct active centers, carrying out L-glutamine
hydrolysis, conversion of 2-oxoglutarate into
L-glutamate, and electron uptake from an electron donor.
Length = 392
Score = 476 bits (1227), Expect = e-167
Identities = 172/343 (50%), Positives = 198/343 (57%), Gaps = 32/343 (9%)
Query: 58 DFVTHDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGE 117
D D+ E ++ F AMSFG++S EA LA G SNTGEGGE
Sbjct: 57 DEEVDDRVTIGPNAEKPLKLDSPFNISAMSFGALSKEAKEALAIGAALAGTASNTGEGGE 116
Query: 118 NPERYLSSGDENQRSAIKQGKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHA 177
PE E IKQ VASGRFGV YL A
Sbjct: 117 LPEER-----EGGGDIIKQ-------------------------VASGRFGVRPEYLNKA 146
Query: 178 DDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIY 237
D ++IK+ QGAKPGEGG LPG KVT++IA R PGV LISPPPHHDIYSIEDLA+LI
Sbjct: 147 DAIEIKIGQGAKPGEGGHLPGEKVTEEIAKIRGIPPGVDLISPPPHHDIYSIEDLAQLIE 206
Query: 238 DLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPW 297
DL+ A I VKLV+ G G +A+GVA A+ I I G +GGTGA+ T I + GLP
Sbjct: 207 DLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPT 266
Query: 298 ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMM 357
ELG+A HQ L N LR RV L A G +RTG DV A LGAD +G+ TA LI +GC
Sbjct: 267 ELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQA 326
Query: 358 RKCHLNTCPVGIATQDPEL--RKKFAGKPEHVINYLFMLAEEV 398
RKCH NTCPVG+ATQDPEL R GK E V NYL LAEE+
Sbjct: 327 RKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSLAEEL 369
>gnl|CDD|236968 PRK11750, gltB, glutamate synthase subunit alpha; Provisional.
Length = 1485
Score = 493 bits (1272), Expect = e-162
Identities = 200/382 (52%), Positives = 254/382 (66%), Gaps = 34/382 (8%)
Query: 26 QEAASNNNKNAYDRFRES-NMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATG 84
Q+A + + + Y + + N V +TLR L D P+ + EVEPA E+ KRF +
Sbjct: 807 QKAVQSGDYSDYQEYAKLVNERPV--ATLRDLLALKPADNPIPLDEVEPAEELFKRFDSA 864
Query: 85 AMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQGKLYPKTY 144
AMS G++S EAH LA AMN++G +SN+GEGGE+P RY + + S IKQ
Sbjct: 865 AMSIGALSPEAHEALAIAMNRLGGRSNSGEGGEDPARYGT----EKVSKIKQ-------- 912
Query: 145 CFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKD 204
VASGRFGVT +YL +A+ LQIK+AQGAKPGEGG+LPG KV
Sbjct: 913 -----------------VASGRFGVTPAYLVNAEVLQIKVAQGAKPGEGGQLPGDKVNPL 955
Query: 205 IASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASG 264
IA R+SVPGV LISPPPHHDIYSIEDLA+LI+DLK NP A +SVKLVSE GVG +A+G
Sbjct: 956 IARLRYSVPGVTLISPPPHHDIYSIEDLAQLIFDLKQVNPKALVSVKLVSEPGVGTIATG 1015
Query: 265 VAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQ 324
VAK A+ I ISG+DGGTGAS T +K AG PWELG+AETHQ L N LR ++ LQ DG
Sbjct: 1016 VAKAYADLITISGYDGGTGASPLTSVKYAGSPWELGLAETHQALVANGLRHKIRLQVDGG 1075
Query: 325 IRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKK-FAGK 383
++TG DV+ AA+LGA+ G T P++ +GC +R CHLN C G+ATQD +LRK + G
Sbjct: 1076 LKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYHGL 1135
Query: 384 PEHVINYLFMLAEEVSRDYRAE 405
PE V+NY +AEE R++ A+
Sbjct: 1136 PEMVMNYFEFIAEET-REWMAQ 1156
>gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a
structurally conserved phosphate binding motif and in
general share an eight beta/alpha closed barrel
structure. Specific for this family is the conserved
phosphate binding site at the edges of strands 7 and 8.
The phosphate comes either from the substrate, as in the
case of inosine monophosphate dehydrogenase (IMPDH), or
from ribulose-5-phosphate 3-epimerase (RPE) or from
cofactors, like FMN.
Length = 200
Score = 51.0 bits (122), Expect = 2e-07
Identities = 28/125 (22%), Positives = 46/125 (36%), Gaps = 15/125 (12%)
Query: 222 PHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGG 281
Y + ELI +L+ A P+ ++ VKL + A+ + + + + GG
Sbjct: 91 HGAVGYLAREDLELIRELREAVPDVKVVVKLS--PTGELAAAAAEEAGVDEVGLGNGGGG 148
Query: 282 TGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADE 341
G V +L L S+V + A G I D A LGAD
Sbjct: 149 GGGRD-------------AVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADG 195
Query: 342 IGLST 346
+ + +
Sbjct: 196 VIVGS 200
>gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase,
type 2. Isopentenyl-diphosphate delta-isomerase (IPP
isomerase) interconverts isopentenyl diphosphate and
dimethylallyl diphosphate. This model represents the
type 2 enzyme. FMN, NADPH, and Mg2+ are required by this
form, which lacks homology to the type 1 enzyme
(TIGR02150). IPP is precursor to many compounds,
including enzyme cofactors, sterols, and isoprenoids
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 333
Score = 36.1 bits (84), Expect = 0.029
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 11/102 (10%)
Query: 253 VSEVGVGVVASGVAKGKAEHIVISGHD-GGTGASSWTGIKN--------AGLPWELGVAE 303
V EVG G+ VAK +S D G G +SW ++N A + G+
Sbjct: 184 VKEVGFGISKE-VAK-LLADAGVSAIDVAGAGGTSWAQVENYRAKGSNLASFFNDWGIPT 241
Query: 304 THQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345
+L + + + A G +RTG DV A LGAD +G++
Sbjct: 242 AASLLEVRSDAPDAPIIASGGLRTGLDVAKAIALGADAVGMA 283
>gnl|CDD|239205 cd02811, IDI-2_FMN, Isopentenyl-diphosphate:dimethylallyl
diphosphate isomerase type 2 (IDI-2) FMN-binding domain.
Two types of IDIs have been characterized at present.
The long known IDI-1 is only dependent on divalent
metals for activity, whereas IDI-2 requires a metal, FMN
and NADPH. IDI-2 catalyzes the interconversion of
isopentenyl diphosphate (IPP) and dimethylallyl
diphosphate (DMAPP) in the mevalonate pathway.
Length = 326
Score = 30.5 bits (70), Expect = 1.8
Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 27/112 (24%)
Query: 252 LVSEVGVGV--------VASGVAKGKAEHIVISGHDGGTGASSWTGI-----KNAGLP-- 296
+V EVG G+ +GV I ++G GGT SW + K++
Sbjct: 182 IVKEVGFGISRETAKRLADAGVK-----AIDVAGA-GGT---SWARVENYRAKDSDQRLA 232
Query: 297 ---WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLS 345
+ G+ +L + + + L A G IR G D+ A LGAD +G++
Sbjct: 233 EYFADWGIPTAASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVGMA 284
>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional.
Length = 381
Score = 30.4 bits (69), Expect = 2.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 321 ADGQIRTGFDVVVAALLGAD 340
AD IR G DVV LGAD
Sbjct: 305 ADSGIRNGLDVVRMIALGAD 324
>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous
FMN-dependent alpha-hydroxyacid oxidizing enzymes. This
family occurs in both prokaryotes and eukaryotes.
Members of this family include flavocytochrome b2
(FCB2), glycolate oxidase (GOX), lactate monooxygenase
(LMO), mandelate dehydrogenase (MDH), and long chain
hydroxyacid oxidase (LCHAO). In green plants, glycolate
oxidase is one of the key enzymes in photorespiration
where it oxidizes glycolate to glyoxylate. LMO catalyzes
the oxidation of L-lactate to acetate and carbon
dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate.
It is an enzyme in the mandelate pathway that occurs in
several strains of Pseudomonas which converts
(R)-mandelate to benzoate.
Length = 299
Score = 29.3 bits (67), Expect = 3.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 313 LRSRVVLQADGQIRTGFDVVVAALLGAD 340
+ R+ + DG IR G DV+ A LGAD
Sbjct: 224 VGGRIEVLLDGGIRRGTDVLKALALGAD 251
>gnl|CDD|116452 pfam07840, FadR_C, FadR C-terminal domain. This family contains
sequences that are similar to the fatty acid metabolism
regulator protein (FadR). This functions as a dimer,
with each monomer being composed of an N-terminal
DNA-binding domain and a regulatory C-terminal domain. A
linker comprising two short alpha helices joins the two
domains. In the C-terminal domain, an antiparallel array
of six alpha helices forms a barrel-like structure,
while a seventh alpha helix forms a 'lid' at the end
closest to the N-terminal domain. This structure was
found to be similar to that of the C-terminal domain of
the Tet repressor. Long-chain acyl-CoA thioesters
interact directly and reversibly with the C-terminal
domain, and this interaction affects the structure and
therefore the DNA binding properties of the N-terminal
domain.
Length = 164
Score = 28.7 bits (65), Expect = 4.1
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 6 YYYFYKSITGLISKPFSTDFQEAASNNNKN-AYDRFRESNMESVKY-STLRGQLD 58
YYF ++ F D E N + D R+ +ES K ++R +L
Sbjct: 106 RYYFSNPEARELALKFYRDLLELCEEGNYDKVPDVVRQYGIESGKIWQSMRDELP 160
>gnl|CDD|189036 cd09866, PIN_Fcf1-Utp23-H, PIN domain of rRNA-processing protein
Fcf1- and Utp23-like homologs found in eukaryotes except
fungi. PIN domain homologs of Fcf1/Utp24
(FAF1-copurifying factor 1/U three-associated protein
24) and Utp23, essential proteins involved in pre-rRNA
processing and 40S ribosomal subunit assembly, are
included in this subfamily. Fcf1 is a component of the
small subunit (SSU) processome and an essential
nucleolar protein required for processing of the 18S
pre-rRNA at sites A0-A2. These PIN (PilT N terminus)
domains are homologs of flap endonuclease-1 (FEN1)-like
PIN domains, but apparently lack the H3TH domain or
extensive arch/clamp region seen in the latter. PIN
domains typically contain three or four conserved acidic
residues (putative metal-binding, active site residues).
The Fcf1-Utp23 homolog PIN domain subfamily has three of
these conserved acidic residues rather than the four
seen in the Fcf1 PIN domain subfamily.
Length = 147
Score = 28.3 bits (64), Expect = 4.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 369 IATQDPELRKKFAGKP 384
+ATQD ELR+K P
Sbjct: 117 VATQDKELREKLRKIP 132
>gnl|CDD|197843 smart00719, Plus3, Short conserved domain in transcriptional
regulators. Plus3 domains occur in the Saccharomyces
cerevisiae Rtf1p protein, which interacts with Spt6p,
and in parsley CIP, which interacts with the bZIP
protein CPRF1.
Length = 109
Score = 28.0 bits (63), Expect = 4.3
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 288 TGIKNAGLPWELGVAETHQVLALNNLRSRVVLQAD 322
TG+K A P+ LG T+ +L + N S V+Q +
Sbjct: 55 TGVKEADKPYSLGGKTTNVLLEVLNGDSEKVVQIN 89
>gnl|CDD|233554 TIGR01739, tegu_FGAM_synt, herpesvirus tegument
protein/v-FGAM-synthase. This model describes a family
of large proteins of herpesvirues. The protein is
described variably as tegument protein or
phosphoribosylformylglycinamidine synthase
(FGAM-synthase). Most of the length of the protein shows
homology to eukaryotic FGAM-synthase. Functional
characterizations were not verified during construction
of this model.
Length = 1202
Score = 29.3 bits (66), Expect = 4.8
Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 11/90 (12%)
Query: 194 GELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLV 253
L K+T D+ G LI H + E I L A +S +
Sbjct: 701 VLLSAKKITPDL-----KSHGSHLIWLSLHPSYTLAGSIFEQILGLSFIRLPA-LSPVSL 754
Query: 254 SEVGVGVVASGVAKGKAEHIVISGHDGGTG 283
++ S + E +++SGHD G
Sbjct: 755 KKL-----LSALQTLVKEGVIVSGHDVSDG 779
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase.
Length = 666
Score = 29.2 bits (65), Expect = 5.3
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 6/61 (9%)
Query: 196 LPGYKVTKDIASTRHSVPG----VGLISPP-PHHDIYSIEDLAELIYDLKCANPNARISV 250
L GY +T+ A T S+P +G + PP P+ DI +E + E+ YD + P I +
Sbjct: 415 LQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDI-RLESVPEMEYDALASTPRGEICI 473
Query: 251 K 251
+
Sbjct: 474 R 474
>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and
related proteins) [Coenzyme transport and metabolism].
Length = 360
Score = 28.8 bits (65), Expect = 5.7
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 321 ADGQIRTGFDVVVAALLGADEIGLS 345
ADG IR+G DV A LGAD +G+
Sbjct: 278 ADGGIRSGLDVAKALALGADAVGIG 302
>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase.
Length = 302
Score = 28.6 bits (65), Expect = 6.4
Identities = 13/23 (56%), Positives = 15/23 (65%)
Query: 322 DGQIRTGFDVVVAALLGADEIGL 344
DG IR G DV+ A LGAD + L
Sbjct: 231 DGGIRRGTDVLKALALGADAVLL 253
>gnl|CDD|235732 PRK06189, PRK06189, allantoinase; Provisional.
Length = 451
Score = 28.9 bits (65), Expect = 6.6
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 222 PHHDIYSIEDLAELIYDLKCANP 244
PH+ +++ ED + KCA P
Sbjct: 265 PHYLLFTEEDFERIGAVAKCAPP 287
>gnl|CDD|235391 PRK05290, PRK05290, hybrid cluster protein; Provisional.
Length = 546
Score = 28.2 bits (64), Expect = 9.4
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 261 VASGVAKGKAEHIVISGHD 279
V GV KG I++SGHD
Sbjct: 228 VNIGVRKGPG--ILVSGHD 244
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.134 0.395
Gapped
Lambda K H
0.267 0.0733 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,888,754
Number of extensions: 2236084
Number of successful extensions: 1964
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1951
Number of HSP's successfully gapped: 27
Length of query: 447
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 347
Effective length of database: 6,502,202
Effective search space: 2256264094
Effective search space used: 2256264094
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.3 bits)