RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10999
(447 letters)
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur
flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum
brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 742 bits (1918), Expect = 0.0
Identities = 206/382 (53%), Positives = 261/382 (68%), Gaps = 30/382 (7%)
Query: 26 QEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFATGA 85
Q+A +N++ + ++ E + LR L+ + PV + EVE I KRF T
Sbjct: 799 QQAVTNDSYTTFKKYSEQ-VNKRPPMQLRDLLELRSTKAPVPVDEVESITAIRKRFITPG 857
Query: 86 MSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERY--LSSGDENQRSAIKQGKLYPKT 143
MS G++S EAH TL AMN+IGAKS++GEGGE+P R+ +GD N SAIKQ
Sbjct: 858 MSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPARFRPDKNGD-NWNSAIKQ------- 909
Query: 144 YCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTK 203
VASGRFGVT+ YL +L+IK+AQGAKPGEGG+LPG+KVT+
Sbjct: 910 ------------------VASGRFGVTAEYLNQCRELEIKVAQGAKPGEGGQLPGFKVTE 951
Query: 204 DIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVAS 263
IA RHS PGV LISPPPHHDIYSIEDLA+LIYDLK NP+A+++VKLVS G+G +A+
Sbjct: 952 MIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAA 1011
Query: 264 GVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADG 323
GVAK A+ I+ISG+ GGTGAS T IK AGLPWE+G++E HQVL LN LR RV L+ DG
Sbjct: 1012 GVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDG 1071
Query: 324 QIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAGK 383
++TG D+V+AA+LGA+E G+ TA LI MGC M+R+CH NTCPVG+ QD +LR+KF G
Sbjct: 1072 GLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGT 1131
Query: 384 PEHVINYLFMLAEEVSRDYRAE 405
PE V+N LAEEV R+ A
Sbjct: 1132 PEKVVNLFTFLAEEV-REILAG 1152
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 730 bits (1888), Expect = 0.0
Identities = 202/401 (50%), Positives = 251/401 (62%), Gaps = 47/401 (11%)
Query: 26 QEAASNNNKNAYDRFRE--SNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFAT 83
+ + NN AYD + ++ + LR LDF + + EVE IVKRF T
Sbjct: 813 KVGGNGNNGEAYDHYELYRQYLKDRPVTALRDLLDFNADQPAISLEEVESVESIVKRFCT 872
Query: 84 GAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDE--------------- 128
G MS G++S EAH TLA AMN++GAKSN+GEGGE+ RYL+ D
Sbjct: 873 GGMSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTLPHLHGL 932
Query: 129 ----NQRSAIKQGKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKM 184
SAIKQ +ASGRFGVT YL L+IKM
Sbjct: 933 QNGDTANSAIKQ-------------------------IASGRFGVTPEYLMSGKQLEIKM 967
Query: 185 AQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANP 244
AQGAKPGEGG+LPG KV++ IA R S PGV LISPPPHHDIYSIEDLA+LIYDL NP
Sbjct: 968 AQGAKPGEGGQLPGKKVSEYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINP 1027
Query: 245 NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAET 304
A++SVKLV+E+G+G +A+GVAK A+ I ISGHDGGTGAS + IK+AG PWELGV E
Sbjct: 1028 EAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEV 1087
Query: 305 HQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNT 364
H+VL N LR RV+L+ADG ++TG+DVV+AAL+GA+E G + +I GC M R CH N
Sbjct: 1088 HRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNN 1147
Query: 365 CPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSRDYRAE 405
CPVG+ATQ LR++F G P V+N+ + +AEEV R A
Sbjct: 1148 CPVGVATQQERLRQRFKGVPGQVVNFFYFIAEEV-RSLLAH 1187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.5 bits (141), Expect = 3e-09
Identities = 71/464 (15%), Positives = 128/464 (27%), Gaps = 182/464 (39%)
Query: 12 SITGLISK--PFSTDFQEAASNNN-----KNAYDRFRESNMESVKYSTLRGQLD---FVT 61
+ L+ K + + E + F E+ Y L G D
Sbjct: 56 TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-ENC-----Y--LEGN-DIHALAA 106
Query: 62 HDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTT--LAKAMNKIGAKSNT---GEGG 116
+ + + E++K + T A + + L +A+ + A+ G+G
Sbjct: 107 KLLQENDTTLVKTKELIKNYIT-ARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG- 164
Query: 117 ENPERYLSSGDENQRSAIKQGKLYPKTY-CFLSSLF--------------TDLFPVY--G 159
N + Y +E + LY +TY + L D V+ G
Sbjct: 165 -NTDDYF---EELR-------DLY-QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 160 LPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLIS 219
L + +L + + P + Y + S S P +G+I
Sbjct: 213 LNILE--------WLENPSN---------TPDKD-----Y-----LLSIPISCPLIGVIQ 245
Query: 220 PPPHHDIYSIEDLAELIYDLKCA--NP-NARISVKLVSEVGVGVV-ASGVAKGKAE---- 271
LA + K P R +K + G+V A +A+ +
Sbjct: 246 ------------LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFF 293
Query: 272 -----------HIVISGH-----------------DGGTGASSW----TGIK-------- 291
I + + + G S + +
Sbjct: 294 VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYV 353
Query: 292 ---NAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAP 348
N+ LP A ++L N +V+ +G +L GL
Sbjct: 354 NKTNSHLP-----AGKQVEISLVNGAKNLVV-------SGP---PQSL-----YGL---- 389
Query: 349 LITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG-KPEHVINYL 391
+RK P G+ Q R F+ K + +L
Sbjct: 390 -----NLTLRKAK---APSGL-DQS---RIPFSERKLKFSNRFL 421
Score = 45.4 bits (107), Expect = 4e-05
Identities = 42/192 (21%), Positives = 58/192 (30%), Gaps = 72/192 (37%)
Query: 161 PVASGRFG-VT----SSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGV 215
S RF V S L A DL + KD+ S
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDL--------------------INKDLVKNNVSFNAK 453
Query: 216 GLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVA-SGVAKGKAEHIV 274
+ P +Y D + DL+ + + IS ++V + V + KA HI+
Sbjct: 454 DIQIP-----VYDTFDGS----DLRVLSGS--ISERIVDCIIRLPVKWETTTQFKATHIL 502
Query: 275 ISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVA 334
D G G +S L L R DG TG V+VA
Sbjct: 503 ----DFGPGGAS----------------------GLGVLTHRNK---DG---TGVRVIVA 530
Query: 335 ALLG---ADEIG 343
L D+ G
Sbjct: 531 GTLDINPDDDYG 542
Score = 33.5 bits (76), Expect = 0.17
Identities = 42/244 (17%), Positives = 64/244 (26%), Gaps = 87/244 (35%)
Query: 75 AEIVKRFATG-AMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSA 133
+IV + FG + AM +G E+ +E+ S
Sbjct: 1662 LDIVINNPVNLTIHFGGEKGKRIRENYSAM----IFETIVDGKLKTEKIFKEINEHSTSY 1717
Query: 134 IKQGKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEG 193
+ K + FT P A A D +K ++G P +
Sbjct: 1718 TFRS---EKGLLSATQ-FTQ-------P-AL----TLMEKAAFED---LK-SKGLIPADA 1757
Query: 194 ---GELPGYKVTKDIASTRHSVPGVG----LISPPPHHDIYSIEDLAELI---------- 236
G HS+ G L S D+ SIE L E++
Sbjct: 1758 TFAG---------------HSL---GEYAALASLA---DVMSIESLVEVVFYRGMTMQVA 1796
Query: 237 ----------YDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEH------------IV 274
Y + NP R++ E + V V K V
Sbjct: 1797 VPRDELGRSNYGMIAINPG-RVAASFSQEA-LQYVVERVGKRTGWLVEIVNYNVENQQYV 1854
Query: 275 ISGH 278
+G
Sbjct: 1855 AAGD 1858
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural
genomics, riken structural genomics/P initiative, RSGI;
HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1
PDB: 1vcg_A* 3dh7_A*
Length = 332
Score = 50.0 bits (119), Expect = 8e-07
Identities = 36/198 (18%), Positives = 61/198 (30%), Gaps = 20/198 (10%)
Query: 161 PVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISP 220
P A F V + +AQ + G + + ++P
Sbjct: 103 PEALRSFRVRKVAPKALLIANLGLAQLRRYGR-------DDLLRLVEMLEADALAFHVNP 155
Query: 221 PPHHDIYSIEDLAELIYDLK-CANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHD 279
D L+ L + VK V A + + ++G
Sbjct: 156 LQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVGHGLSREAALALRDLPLAAVDVAGA- 214
Query: 280 GGTGASSWTGIKNAGLP--------WELGVAETHQVLALNNLRSRVVLQADGQIRTGFDV 331
GGT SW ++ E+G+ +L + + + L A G + TG D
Sbjct: 215 GGT---SWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVASGGVYTGTDG 271
Query: 332 VVAALLGADEIGLSTAPL 349
A LGAD + ++ L
Sbjct: 272 AKALALGADLLAVARPLL 289
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate
isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Length = 365
Score = 45.6 bits (108), Expect = 2e-05
Identities = 30/106 (28%), Positives = 46/106 (43%), Gaps = 12/106 (11%)
Query: 252 LVSEVGVGVVASGVAKGK---AEHIVISGHDGGTGASSWTGIKNAGLP-----WELGVAE 303
++ EVG G+ + + + ISG GGT S+ I+N + G
Sbjct: 210 ILKEVGFGMDVKTIQTAIDLGVKTVDISGR-GGT---SFAYIENRRGGNRSYLNQWGQTT 265
Query: 304 THQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349
+L L +V + A G IR D++ A +LGA +GLS L
Sbjct: 266 AQVLLNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLSRTML 311
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis,
dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus
subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Length = 349
Score = 45.5 bits (108), Expect = 2e-05
Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 252 LVSEVGVGVVASGVAKGK---AEHIVISGHDGGTGASSWTGIKN------AGLPWELGVA 302
+V EVG G+ + K A + I G+ GGT +++ I+N G++
Sbjct: 182 IVKEVGFGMSKASAGKLYEAGAAAVDIGGY-GGT---NFSKIENLRRQRQISFFNSWGIS 237
Query: 303 ETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPL 349
+ + + + A G ++ DV A LGA G++ L
Sbjct: 238 TAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFL 284
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl
diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus
shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A*
3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Length = 368
Score = 45.6 bits (108), Expect = 2e-05
Identities = 28/131 (21%), Positives = 45/131 (34%), Gaps = 22/131 (16%)
Query: 228 SIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSW 287
++E L ++ + I VK A + ++ SG GGT +W
Sbjct: 175 ALEKLRDI-----SKELSVPIIVKESGNGISMETAKLLYSYGIKNFDTSGQ-GGT---NW 225
Query: 288 TGIKN-------------AGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVA 334
I+ A + GV ++ + L G IR+G D A
Sbjct: 226 IAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKA 285
Query: 335 ALLGADEIGLS 345
LGAD G++
Sbjct: 286 IALGADIAGMA 296
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.5 bits (99), Expect = 3e-04
Identities = 53/450 (11%), Positives = 112/450 (24%), Gaps = 156/450 (34%)
Query: 31 NNNKNAYDRFRESNMESVKYSTLRGQLDFVTHDKPVD----ISEVEPAAEIVKRFATGAM 86
+ + +F E + Y L + + I + + + FA +
Sbjct: 73 SKQEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 87 SFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLS----SGDENQRSAIKQGKLYPK 142
S ++ + L +A+ ++ P + + G GK
Sbjct: 132 S----RLQPYLKLRQALLEL-----------RPAKNVLIDGVLG---------SGK---- 163
Query: 143 TYCFLSSL---------FTDLFP--VYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPG 191
+ + ++ L + + L L ++
Sbjct: 164 -----TWVALDVCLSYKVQCKMDFKIFWLNL--KNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 192 EGGELPGYKVTKDIASTRHSVPGVGLISPPPHH-------DIYSIEDLAELIYDLKCANP 244
K+ L+ P+ ++ + + ++L C
Sbjct: 217 SDHSSN-IKLRIHSIQAELR----RLLKSKPYENCLLVLLNVQNAKAWNA--FNLSC--- 266
Query: 245 NARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGG-TGA------SSWTGIKNAGLPW 297
+I L++ V ++ HI + H T + + LP
Sbjct: 267 --KI---LLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 298 ELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTA-PLITMGC-- 354
E T L+ ++A + GL+T + C
Sbjct: 321 E---VLTTNPRRLS--------------------IIAESI---RDGLATWDNWKHVNCDK 354
Query: 355 --TMMRKCHLNTCPVGIATQDP-ELRKKFAGKPEHVINYLFMLAEEVSRDYRAESPGFDF 411
T++ + +P E RK F + L +
Sbjct: 355 LTTIIESS--------LNVLEPAEYRKMF--------DRLSVFPPSA-----------HI 387
Query: 412 P-----LVWLGDFKQEGDQL-------SLV 429
P L+W K + + SLV
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLV 417
Score = 39.1 bits (90), Expect = 0.003
Identities = 28/194 (14%), Positives = 56/194 (28%), Gaps = 43/194 (22%)
Query: 58 DFVTHDKPVDISEVEPA-----AEIVKRFATGA-MSFGSISIEAHTTLAKAMNKIGAKSN 111
DF++ IS + E+ + E TT + ++ I
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES-- 336
Query: 112 TGEGGENPERYLSSGDENQRSAIKQG--KLYPKTYCFLSSLFTDL--FPVYGLPVASGRF 167
+G + + + + I+ L P Y +F L FP + +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEY---RKMFDRLSVFP-PSAHIPTILL 392
Query: 168 GVTSSYLAHADDLQIKMAQGAKPGEGGELPGYK-VTKDIASTRHSVPGVGLISPPPHHDI 226
+ + +D + + + +L Y V K + S+ I
Sbjct: 393 SLIWFDVIKSDVMVV-VN---------KLHKYSLVEKQPKESTISI-----------PSI 431
Query: 227 Y-----SIEDLAEL 235
Y +E+ L
Sbjct: 432 YLELKVKLENEYAL 445
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer,
oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces
cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A*
1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A*
1qcw_A* 3ks0_A*
Length = 511
Score = 30.0 bits (68), Expect = 1.8
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 302 AETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGL 344
AET +L NL+ ++ + DG +R G DV+ A LGA +GL
Sbjct: 389 AETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGL 431
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 29.4 bits (66), Expect = 2.5
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 3/52 (5%)
Query: 353 GC--TMMRKCHLNTCPVG-IATQDPELRKKFAGKPEHVINYLFMLAEEVSRD 401
G + + + I EL AG+P +I + A E+ R
Sbjct: 46 GQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRK 97
>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural
motif, flattened antiparallel BE barrel, flexible hinge
region, connecting domain; HET: FAD; 1.90A {Homo
sapiens} PDB: 2qtz_A*
Length = 539
Score = 29.3 bits (66), Expect = 3.0
Identities = 8/36 (22%), Positives = 15/36 (41%)
Query: 166 RFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKV 201
R GV + +LA ++ A + G+ K+
Sbjct: 326 RKGVCTGWLALLVASVLQPNIHASHEDSGKALAPKI 361
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain,
structural genomics, joint center for STR genomics,
JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc
13032}
Length = 393
Score = 28.6 bits (64), Expect = 4.0
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 7/93 (7%)
Query: 255 EVGVGVVASGVAKGK-AEHIVISGHDG---GTGASSWTGIKNAGLPWELGVAETHQVLAL 310
+ V V+A GV A H++ +G G G G ++ + + +A+
Sbjct: 209 SLDVPVIAGGVNDYTTALHMMRTGAVGIIVGGGENTNSLALGMEVSMATAIADVAAARRD 268
Query: 311 NNLRSR---VVLQADGQIRTGFDVVVAALLGAD 340
+ V + ADG I DVV A GAD
Sbjct: 269 YLDETGGRYVHIIADGSIENSGDVVKAIACGAD 301
>1n7z_A Baseplate structural protein GP8; bacteriophage T4, dimer, beta
sandwich, viral protein; 2.00A {Enterobacteria phage T4}
SCOP: b.127.1.1 PDB: 1n80_A 1n8b_A 1pdm_A 1tja_A
Length = 334
Score = 28.9 bits (63), Expect = 4.1
Identities = 19/139 (13%), Positives = 40/139 (28%), Gaps = 10/139 (7%)
Query: 2 NKHYYYYFYKSITGLISKPFSTDFQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVT 61
+ + + Y ++ + + ++ D R +++ + +
Sbjct: 184 DGYVWEYLFEIPPDVSINRCTNEYIVVPWPEELKE-DPTRWGYEDNLTWQQ--DDFGLIY 240
Query: 62 HDKPVDISEVEPAAEI--VKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENP 119
K I + + G F ISI + AKA + +
Sbjct: 241 RVKANTIRFKAYLDSVYFPEAALPGNKGFRQISIITNPLEAKAHPNDPNVKAEKDYYDPE 300
Query: 120 ERYLSSGD----ENQRSAI 134
+ SG+ EN R I
Sbjct: 301 DLMRHSGEMIYMEN-RPPI 318
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD
DATA with FBAR, structural genomics, PSI; 1.80A
{Mycobacterium tuberculosis}
Length = 148
Score = 27.7 bits (61), Expect = 5.2
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 265 VAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQ 306
V G H+ GH G TG W + GLPW G + H
Sbjct: 111 VLDGFEGHLDAEGHRGATG---W---RAVGLPWRQGRSHHHH 146
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1,
structural genomics, structural genom consortium, SGC,
oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB:
2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Length = 392
Score = 28.3 bits (64), Expect = 5.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 313 LRSRVVLQADGQIRTGFDVVVAALLGAD 340
+ +V + DG +R G DV+ A LGA
Sbjct: 304 VEGKVEVFLDGGVRKGTDVLKALALGAK 331
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing
enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas
putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A*
2a7p_A* 2a85_A* 2a7n_A*
Length = 380
Score = 27.9 bits (63), Expect = 6.5
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 322 DGQIRTGFDVVVAALLGAD 340
D R G D+V A LGA+
Sbjct: 284 DSGFRRGSDIVKALALGAE 302
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH
oxidoreductase-oxidoreductase inhibitor complex; HET:
FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Length = 352
Score = 27.9 bits (63), Expect = 7.9
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 322 DGQIRTGFDVVVAALLGAD 340
DG +RTG DV+ A LGA
Sbjct: 278 DGGVRTGTDVLKALALGAR 296
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase
(oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP:
c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Length = 370
Score = 27.5 bits (62), Expect = 8.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Query: 313 LRSRVVLQADGQIRTGFDVVVAALLGAD 340
+ R+ + DG +R G DV A LGA
Sbjct: 277 AQGRIPVFLDGGVRRGTDVFKALALGAA 304
>2xwg_A Sortase; hydrolase, fimbrial assembly; 2.40A {Actinomyces oris}
Length = 235
Score = 27.2 bits (60), Expect = 9.4
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 257 GVGVVA--SGVAKGKAEHIVISGHDGGTGASSWTGIKNA 293
GVG + S G + H V++GH G + A+ + +
Sbjct: 128 GVGHLFGTSLPVGGPSTHSVLTGHTGLSTATMFDNLNQL 166
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A
{Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Length = 256
Score = 27.2 bits (61), Expect = 9.6
Identities = 5/29 (17%), Positives = 11/29 (37%)
Query: 158 YGLPVASGRFGVTSSYLAHADDLQIKMAQ 186
+ + FG + Y A ++ + Q
Sbjct: 123 VSVSHRANMFGTVADYFAQSNKNITILVQ 151
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET:
FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A*
2e77_A* 2j6x_A*
Length = 368
Score = 27.5 bits (62), Expect = 9.8
Identities = 9/23 (39%), Positives = 11/23 (47%)
Query: 322 DGQIRTGFDVVVAALLGADEIGL 344
D +R G V A GAD + L
Sbjct: 290 DSGVRRGEHVAKALASGADVVAL 312
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.395
Gapped
Lambda K H
0.267 0.0620 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,983,401
Number of extensions: 437120
Number of successful extensions: 997
Number of sequences better than 10.0: 1
Number of HSP's gapped: 986
Number of HSP's successfully gapped: 30
Length of query: 447
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 350
Effective length of database: 3,993,456
Effective search space: 1397709600
Effective search space used: 1397709600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.7 bits)