RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10999
(447 letters)
>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase,
central and FMN domains {Synechocystis sp. [TaxId:
1143]}
Length = 809
Score = 419 bits (1078), Expect = e-140
Identities = 195/376 (51%), Positives = 248/376 (65%), Gaps = 8/376 (2%)
Query: 25 FQEAASNNNKNAYDRFRE--SNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKRFA 82
++ + NN AYD + ++ + LR LDF + + EVE IVKRF
Sbjct: 382 YKVGGNGNNGEAYDHYELYRQYLKDRPVTALRDLLDFNADQPAISLEEVESVESIVKRFC 441
Query: 83 TGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQGKLYPK 142
TG MS G++S EAH TLA AMN++GAKSN+GEGGE+ RYL+ D +
Sbjct: 442 TGGMSLGALSREAHETLAIAMNRLGAKSNSGEGGEDVVRYLTLDDVDSEGNSPTLPHLHG 501
Query: 143 TYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVT 202
++ +ASGRFGVT YL L+IKMAQGAKPGEGG+LPG KV+
Sbjct: 502 LQNGDTANSAIKQ------IASGRFGVTPEYLMSGKQLEIKMAQGAKPGEGGQLPGKKVS 555
Query: 203 KDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVA 262
+ IA R S PGV LISPPPHHDIYSIEDLA+LIYDL NP A++SVKLV+E+G+G +A
Sbjct: 556 EYIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIA 615
Query: 263 SGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQAD 322
+GVAK A+ I ISGHDGGTGAS + IK+AG PWELGV E H+VL N LR RV+L+AD
Sbjct: 616 AGVAKANADIIQISGHDGGTGASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRAD 675
Query: 323 GQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFAG 382
G ++TG+DVV+AAL+GA+E G + +I GC M R CH N CPVG+ATQ LR++F G
Sbjct: 676 GGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKG 735
Query: 383 KPEHVINYLFMLAEEV 398
P V+N+ + +AEEV
Sbjct: 736 VPGQVVNFFYFIAEEV 751
>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase,
central and FMN domains {Azospirillum brasilense [TaxId:
192]}
Length = 771
Score = 412 bits (1060), Expect = e-138
Identities = 203/398 (51%), Positives = 260/398 (65%), Gaps = 27/398 (6%)
Query: 2 NKHYYYYFYKSITGLISKPFSTDFQEAASNNNKNAYDRFRESNMESVKYSTLRGQLDFVT 61
+Y + Q+A +N++ + ++ E + LR L+ +
Sbjct: 353 VGGFYRFRKSGDRHGWEGGVIHTLQQAVTNDSYTTFKKYSEQ-VNKRPPMQLRDLLELRS 411
Query: 62 HDKPVDISEVEPAAEIVKRFATGAMSFGSISIEAHTTLAKAMNKIGAKSNTGEGGENPER 121
PV + EVE I KRF T MS G++S EAH TL AMN+IGAKS++GEGGE+P R
Sbjct: 412 TKAPVPVDEVESITAIRKRFITPGMSMGALSPEAHGTLNVAMNRIGAKSDSGEGGEDPAR 471
Query: 122 YLSSGD-ENQRSAIKQGKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDL 180
+ + +N SAIKQ VASGRFGVT+ YL +L
Sbjct: 472 FRPDKNGDNWNSAIKQ-------------------------VASGRFGVTAEYLNQCREL 506
Query: 181 QIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIYDLK 240
+IK+AQGAKPGEGG+LPG+KVT+ IA RHS PGV LISPPPHHDIYSIEDLA+LIYDLK
Sbjct: 507 EIKVAQGAKPGEGGQLPGFKVTEMIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLK 566
Query: 241 CANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGASSWTGIKNAGLPWELG 300
NP+A+++VKLVS G+G +A+GVAK A+ I+ISG+ GGTGAS T IK AGLPWE+G
Sbjct: 567 QINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTGASPQTSIKFAGLPWEMG 626
Query: 301 VAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKC 360
++E HQVL LN LR RV L+ DG ++TG D+V+AA+LGA+E G+ TA LI MGC M+R+C
Sbjct: 627 LSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQC 686
Query: 361 HLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEV 398
H NTCPVG+ QD +LR+KF G PE V+N LAEEV
Sbjct: 687 HSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAEEV 724
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 130 bits (328), Expect = 5e-35
Identities = 37/345 (10%), Positives = 93/345 (26%), Gaps = 82/345 (23%)
Query: 65 PVDISEVEPAAEIVKR-----FATGAMSFGS--ISIEAHTTLAKAMNKIGAKSNTGEGGE 117
+ + +V+ + +I + AM+ G ++ E + +LA+A ++ G G
Sbjct: 17 DLALEQVDISTKIGELSSSSPIFINAMTGGGGKLTYEINKSLARAASQAGIPLAVGSQMS 76
Query: 118 NPERYLSSGDENQRSAIKQGKLYPKTYCFLSSLFTDLFPVYGLPVASGRFGVTSSYLAHA 177
+ S R +
Sbjct: 77 ALKDP-----------------------------------------SERLSYEIVRKENP 95
Query: 178 DDLQIKMAQGAKPGEGGELPGYKVTKDIASTRHSVPGVGLISPPPHHDIYSIEDLAELIY 237
+ L + + + +V ++ +++ + ++
Sbjct: 96 NGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICS 155
Query: 238 DLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGTGAS--SWTGIKNAGL 295
+ + VK V A + + A + I G+ G + + +
Sbjct: 156 RVSV-----PVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGTNFSKIENLRRQRQISF 210
Query: 296 PWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGCT 355
G++ + + + + A G ++ DV A LGA G++
Sbjct: 211 FNSWGISTAASLAEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAG--------- 261
Query: 356 MMRKCHLNTCPVGIATQDPELRKKFAGKPEHVINYLFMLAEEVSR 400
L+ E ++ + ++ EE+
Sbjct: 262 ------------------HFLKALTDSGEEGLLEEIQLILEELKL 288
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 93.4 bits (231), Expect = 7e-22
Identities = 65/379 (17%), Positives = 107/379 (28%), Gaps = 101/379 (26%)
Query: 33 NKNAYDRFRESNMESVKYSTLRGQLDFVTHDKPVDISEVEPAAEIVKR-----FATGAMS 87
+ FR ++Y L G + +SEV+ + + F GAM+
Sbjct: 2 TTTGLEGFR------LRYQALAG----------LALSEVDLTTPFLGKTLKAPFLIGAMT 45
Query: 88 FGSISI-EAHTTLAKAMNKIGAKSNTGEGGENPERYLSSGDENQRSAIKQGKLYPKTYCF 146
G + + LA+A +G G G ER
Sbjct: 46 GGEENGERINLALAEAAEALGVGMMLGSGRILLER------------------------- 80
Query: 147 LSSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIA 206
P A F V + +AQ + G L ++ + A
Sbjct: 81 --------------PEALRSFRVRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADA 126
Query: 207 STRHSVPGVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVA 266
H P + +E LAEL+ + VK V A +
Sbjct: 127 LAFHVNPLQEAVQRGDTDFRGLVERLAELL------PLPFPVMVKEVGHGLSREAALALR 180
Query: 267 KGKAEHIVISGHDGGTGASSWTGIKNAGLP-----WELGVAETHQVLALNNLRSRVVLQA 321
+ ++G GGT + G E+G+ +L + + + L A
Sbjct: 181 DLPLAAVDVAGA-GGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLPHLPLVA 239
Query: 322 DGQIRTGFDVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKKFA 381
G + TG D A LGAD + ++ L +
Sbjct: 240 SGGVYTGTDGAKALALGADLLAVARPLL----------------------------RPAL 271
Query: 382 GKPEHVINYLFMLAEEVSR 400
E V ++ EE+
Sbjct: 272 EGAERVAAWIGDYLEELRT 290
>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 414
Score = 41.1 bits (95), Expect = 2e-04
Identities = 22/85 (25%), Positives = 34/85 (40%)
Query: 270 AEHIVISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGF 329
G G ++ + +AET +L NL+ ++ + DG +R G
Sbjct: 260 VIKAAEIGVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVDGGVRRGT 319
Query: 330 DVVVAALLGADEIGLSTAPLITMGC 354
DV+ A LGA +GL L C
Sbjct: 320 DVLKALCLGAKGVGLGRPFLYANSC 344
>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}
Length = 230
Score = 33.3 bits (75), Expect = 0.041
Identities = 18/125 (14%), Positives = 40/125 (32%), Gaps = 18/125 (14%)
Query: 223 HHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHIVISGHDGGT 282
D + D+A I +K PN + ++ + + + + G T
Sbjct: 108 KRDRHDGLDIASFIRQVKEKYPNQLLMA----DISTFDEGLVAHQAGIDFVGTTLS-GYT 162
Query: 283 GASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEI 342
S ++ + E ++ + + A+G+I + + LG I
Sbjct: 163 PYSRQEA------GPDVALIEALC-------KAGIAVIAEGKIHSPEEAKKINDLGVAGI 209
Query: 343 GLSTA 347
+ A
Sbjct: 210 VVGGA 214
>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 353
Score = 31.9 bits (71), Expect = 0.16
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 321 ADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354
D R G D+V A LGA+ + L A L +
Sbjct: 280 IDSGFRRGSDIVKALALGAEAVLLGRATLYGLAA 313
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 30.7 bits (69), Expect = 0.31
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 308 LALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMG 353
L + + ++A G IRT D V + GAD IG S+ I G
Sbjct: 200 LMKWIVGDEMGVKASGGIRTFEDAVKMIMYGADRIGTSSGVKIVQG 245
>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 349
Score = 29.1 bits (64), Expect = 0.95
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 316 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354
++ + DG +RTG DV+ A LGA I L L + C
Sbjct: 272 KIEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLAC 310
>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus
thermophilus [TaxId: 274]}
Length = 211
Score = 28.8 bits (64), Expect = 0.97
Identities = 11/51 (21%), Positives = 20/51 (39%)
Query: 300 GVAETHQVLALNNLRSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350
G + L + + R ++A G IR + GA +G S+ +
Sbjct: 159 GASLEDVALLVRVAQGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVAL 209
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 28.7 bits (63), Expect = 1.1
Identities = 20/134 (14%), Positives = 38/134 (28%), Gaps = 15/134 (11%)
Query: 214 GVGLISPPPHHDIYSIEDLAELIYDLKCANPNARISVKLVSEVGVGVVASGVAKGKAEHI 273
+I+ E L EL+ ++ PN I ++ A A+ ++I
Sbjct: 88 QCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMA----DIATVEEAKNAARLGFDYI 143
Query: 274 VISGHDGGTGASSWTGIKNAGLPWELGVAETHQVLALNNLRSRVVLQADGQIRTGFDVVV 333
+ H + G ++ V + A+G + T
Sbjct: 144 GTTLHGYTSY---TQGQLLYQNDFQFLKDVLQSV--------DAKVIAEGNVITPDMYKR 192
Query: 334 AALLGADEIGLSTA 347
LG + A
Sbjct: 193 VMDLGVHCSVVGGA 206
>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 359
Score = 29.1 bits (64), Expect = 1.1
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 316 RVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLITMGC 354
R+ + DG +R G DV A LGA + + + ++
Sbjct: 279 RIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAA 317
>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex
aeolicus [TaxId: 63363]}
Length = 225
Score = 27.2 bits (60), Expect = 3.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 314 RSRVVLQADGQIRTGFDVVVAALLGADEIGLSTAPLI 350
+ R+ ++A G IR + GAD IG S+ I
Sbjct: 173 KGRIKVKASGGIRDLETAISMIEAGADRIGTSSGISI 209
>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 234
Score = 26.5 bits (58), Expect = 6.0
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 321 ADGQIRTGFDVVVAALLGADEIGLSTAPLI 350
A G IR+G D V+A GAD IG S+A +
Sbjct: 197 ASGGIRSGIDAVLAVGAGADIIGTSSAVKV 226
>d1vbga1 c.1.12.2 (A:521-876) Pyruvate phosphate dikinase,
C-terminal domain {Maize (Zea mays) [TaxId: 4577]}
Length = 356
Score = 26.7 bits (58), Expect = 7.0
Identities = 16/88 (18%), Positives = 23/88 (26%), Gaps = 8/88 (9%)
Query: 330 DVVVAALLGADEIGLSTAPLITMGCTMMRKCHLNTCPVGIATQDPELRKK----FAGKPE 385
D + A GA IGL + K I ELR++
Sbjct: 28 DALTARNNGAQGIGLCRTEHMFFASDERIKAV----RQMIMAPTLELRQQALDRLLPYQR 83
Query: 386 HVINYLFMLAEEVSRDYRAESPGFDFPL 413
+F + + R P L
Sbjct: 84 SDFEGIFRAMDGLPVTIRLLDPPLHEFL 111
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken
(Gallus gallus), mitochondria [TaxId: 9031]}
Length = 401
Score = 26.5 bits (57), Expect = 7.4
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 148 SSLFTDLFPVYGLPVASGRFGVTSSYLAHADDLQIKMAQGAKPGEGGELPGYKVTKDIA 206
SS ++ + P+ GVT ++ + ++ + GA + G+ +
Sbjct: 1 SSWWSHVEMGPPDPI----LGVTEAFKRDTNSKKMNLGVGAYRDDNGKPYVLNCVRKAE 55
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.395
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,651,658
Number of extensions: 76167
Number of successful extensions: 280
Number of sequences better than 10.0: 1
Number of HSP's gapped: 277
Number of HSP's successfully gapped: 16
Length of query: 447
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 359
Effective length of database: 1,199,356
Effective search space: 430568804
Effective search space used: 430568804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.3 bits)