BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy110
(358 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HL8|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL8|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
pdb|1HL9|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
pdb|1HL9|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With A Mechanism Based Inhibitor
Length = 449
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 140/256 (54%), Gaps = 32/256 (12%)
Query: 106 KYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRS-----------EWFWKN---- 150
+Y P WESL +P W+D+AK GIFIHWG++SVP + + WF++N
Sbjct: 7 RYKPDWESLREHTVPKWFDKAKFGIFIHWGIYSVPGWATPTGELGKVPMDAWFFQNPYAE 66
Query: 151 -WENP----NSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTS 205
+EN S ++ + Y F Y+ FA FTAE +D WAD+ +GAKYV+ T+
Sbjct: 67 WYENSLRIKESPTWEYHVKTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTT 126
Query: 206 KHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS-LYEW---FN 261
KHH+G+ LW +KY +NS+ GPKRDLVG+LA A+R + + FG+Y+S +W
Sbjct: 127 KHHDGFCLWGTKYT-DFNSVKRGPKRDLVGDLAKAVRE--AGLRFGVYYSGGLDWRFTTE 183
Query: 262 PLYVQDKANNFTTNQFVTMK-TLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWL 320
P+ + + N + +++E+V Y P+V+W+D W + + A+
Sbjct: 184 PIRYPEDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNDMGWPEKGKE-DLKYLFAYY 242
Query: 321 YNESPVKNTVVVNDRW 336
YN+ P + VNDRW
Sbjct: 243 YNKHPEGS---VNDRW 255
>pdb|2ZWY|A Chain A, Alpha-L-Fucosidase
pdb|2ZWY|B Chain B, Alpha-L-Fucosidase
pdb|2ZWZ|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZWZ|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Core1
pdb|2ZX5|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX5|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10
pdb|2ZX6|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX6|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-1c
pdb|2ZX7|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX7|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c
pdb|2ZX8|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX8|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, F10-2c-O
pdb|2ZX9|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZX9|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, B4
pdb|2ZXA|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXA|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Fnj-Acetyl
pdb|2ZXB|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXB|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Ph-6fnj
pdb|2ZXD|A Chain A, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
pdb|2ZXD|B Chain B, Alpha-L-Fucosidase Complexed With Inhibitor, Iso-6fnj
Length = 455
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 140/256 (54%), Gaps = 32/256 (12%)
Query: 106 KYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRS-----------EWFWKN---- 150
+Y P WESL +P W+D+AK GIFIHWG++SVP + + WF++N
Sbjct: 7 RYKPDWESLREHTVPKWFDKAKFGIFIHWGIYSVPGWATPTGELGKVPMDAWFFQNPYAE 66
Query: 151 -WEN----PNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTS 205
+EN S ++ + Y F Y+ FA FTAE +D WAD+ +GAKYV+ T+
Sbjct: 67 WYENSLRIKESPTWEYHVKTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTT 126
Query: 206 KHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS-LYEW---FN 261
KHH+G+ LW +KY +NS+ GPKRDLVG+LA A+R + + FG+Y+S +W
Sbjct: 127 KHHDGFCLWGTKYT-DFNSVKRGPKRDLVGDLAKAVRE--AGLRFGVYYSGGLDWRFTTE 183
Query: 262 PLYVQDKANNFTTNQFVTMK-TLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWL 320
P+ + + N + +++E+V Y P+V+W+D W + + A+
Sbjct: 184 PIRYPEDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNDMGWPEKGKE-DLKYLFAYY 242
Query: 321 YNESPVKNTVVVNDRW 336
YN+ P + VNDRW
Sbjct: 243 YNKHPEGS---VNDRW 255
>pdb|1ODU|A Chain A, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
pdb|1ODU|B Chain B, Crystal Structure Of Thermotoga Maritima Alpha-Fucosidase
In Complex With Fucose
Length = 449
Score = 146 bits (368), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 140/256 (54%), Gaps = 32/256 (12%)
Query: 106 KYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRS-----------EWFWKN---- 150
+Y P WESL +P W+D+AK GIFIHWG++SVP + + WF++N
Sbjct: 7 RYKPDWESLREHTVPKWFDKAKFGIFIHWGIYSVPGWATPTGELGKVPMDAWFFQNPYAE 66
Query: 151 -WEN----PNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTS 205
+EN S ++ + Y F Y+ FA FTAE +D WAD+ +GAKYV+ T+
Sbjct: 67 WYENSLRIKESPTWEYHVKTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTT 126
Query: 206 KHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS-LYEW---FN 261
KHH+G+ LW +KY +NS+ GPKRDLVG+LA A+R + + FG+Y+S +W
Sbjct: 127 KHHDGFCLWGTKYT-DFNSVKRGPKRDLVGDLAKAVRE--AGLRFGVYYSGGLDWRFTTE 183
Query: 262 PLYVQDKANNFTTNQFVTMK-TLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWL 320
P+ + + N + +++E+V Y P+V+W+D W + + A+
Sbjct: 184 PIRYPEDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNDMGWPEKGKE-DLKYLFAYY 242
Query: 321 YNESPVKNTVVVNDRW 336
YN+ P + VNDRW
Sbjct: 243 YNKHPEGS---VNDRW 255
>pdb|2WSP|A Chain A, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
pdb|2WSP|B Chain B, Thermotoga Maritima Alpha-L-Fucosynthase, Tmd224g, In
Complex With Alpha-L-Fuc-(1-2)-Beta-L-Fuc-N3
Length = 449
Score = 143 bits (361), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 139/256 (54%), Gaps = 32/256 (12%)
Query: 106 KYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRS-----------EWFWKN---- 150
+Y P WESL +P W+D+AK GIFIHWG++SVP + + WF++N
Sbjct: 7 RYKPDWESLREHTVPKWFDKAKFGIFIHWGIYSVPGWATPTGELGKVPMDAWFFQNPYAE 66
Query: 151 -WEN----PNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTS 205
+EN S ++ + Y F Y+ FA FTAE +D WAD+ +GAKYV+ T+
Sbjct: 67 WYENSLRIKESPTWEYHVKTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTT 126
Query: 206 KHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS-LYEW---FN 261
KHH+G+ LW +KY +NS+ GPKRDLVG+LA A+R + + FG+Y+S +W
Sbjct: 127 KHHDGFCLWGTKYT-DFNSVKRGPKRDLVGDLAKAVRE--AGLRFGVYYSGGLDWRFTTE 183
Query: 262 PLYVQDKANNFTTNQFVTMK-TLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWL 320
P+ + + N + +++E+V Y P+V+W+ W + + A+
Sbjct: 184 PIRYPEDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNGMGWPEKGKE-DLKYLFAYY 242
Query: 321 YNESPVKNTVVVNDRW 336
YN+ P + VNDRW
Sbjct: 243 YNKHPEGS---VNDRW 255
>pdb|2WVT|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With A Novel
Iminosugar Fucosidase Inhibitor
pdb|2WVT|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With A Novel
Iminosugar Fucosidase Inhibitor
pdb|2WVU|A Chain A, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|B Chain B, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|C Chain C, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
pdb|2WVU|D Chain D, Crystal Structure Of A Michaelis Complex Of Alpha-L-
Fucosidase Gh29 From Bacteroides Thetaiotaomicron With
The Synthetic Substrate 4-Nitrophenyl-Alpha-L-Fucose
Length = 443
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 15/207 (7%)
Query: 105 FKYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWENPNSTVTKFMER 164
KY T E P + + ++G FIHWG++++P EW K + + + +
Sbjct: 8 LKYGATNEGKRQDPAMQKFRDNRLGAFIHWGLYAIPG--GEWNGKVYGGAAEWLKSWAKV 65
Query: 165 NYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNS 224
P + + FDA WA + G KYV +T+KHHEG+ LWPSKY +
Sbjct: 66 ---PADEWLKLMDQWNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-KYTV 121
Query: 225 MDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLY---VQDKANNFTTNQFVTMK 281
+ KRD++GEL A + D+HF Y S+ +W NP Y ++ K ++ ++F+
Sbjct: 122 ANTPYKRDILGELVKAYNDEGIDVHF--YFSVMDWSNPDYRYDIKSKEDSIAFSRFLEF- 178
Query: 282 TLPELIEIVQKYQPEV--IWSDGEWEA 306
T +L E+ +Y P V W DG W+A
Sbjct: 179 TDNQLKELATRY-PTVKDFWFDGTWDA 204
>pdb|2XIB|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XIB|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With
Deoxyfuconojirimycin
pdb|2XII|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With An Extended
9- Fluorenone Iminosugar Inhibitor
pdb|2XII|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron In Complex With An Extended
9- Fluorenone Iminosugar Inhibitor
Length = 453
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 15/207 (7%)
Query: 105 FKYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWENPNSTVTKFMER 164
KY T E P + + ++G FIHWG++++P EW K + + + +
Sbjct: 7 LKYGATNEGKRQDPAMQKFRDNRLGAFIHWGLYAIPG--GEWNGKVYGGAAEWLKSWAKV 64
Query: 165 NYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNS 224
P + + FDA WA + G KYV +T+KHHEG+ LWPSKY +
Sbjct: 65 ---PADEWLKLMDQWNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-KYTV 120
Query: 225 MDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLY---VQDKANNFTTNQFVTMK 281
+ KRD++GEL A + D+HF Y S+ +W NP Y ++ K ++ ++F+
Sbjct: 121 ANTPYKRDILGELVKAYNDEGIDVHF--YFSVMDWSNPDYRYDIKSKEDSIAFSRFLEF- 177
Query: 282 TLPELIEIVQKYQPEV--IWSDGEWEA 306
T +L E+ +Y P V W DG W+A
Sbjct: 178 TDNQLKELATRY-PTVKDFWFDGTWDA 203
>pdb|2WVV|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
Length = 450
Score = 94.7 bits (234), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 15/207 (7%)
Query: 105 FKYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWENPNSTVTKFMER 164
KY T E P + + ++G FIHWG++++P EW K + + + +
Sbjct: 4 LKYGATNEGKRQDPAMQKFRDNRLGAFIHWGLYAIPG--GEWNGKVYGGAAEWLKSWAKV 61
Query: 165 NYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNS 224
P + + FDA WA + G KYV +T+KHHEG+ LWPSKY +
Sbjct: 62 ---PADEWLKLMDQWNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-KYTV 117
Query: 225 MDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLY---VQDKANNFTTNQFVTMK 281
+ KRD++GEL A + D+HF Y S+ +W NP Y ++ K ++ ++F+
Sbjct: 118 ANTPYKRDILGELVKAYNDEGIDVHF--YFSVMDWSNPDYRYDIKSKEDSIAFSRFLEF- 174
Query: 282 TLPELIEIVQKYQPEV--IWSDGEWEA 306
T +L E+ +Y P V W DG W+A
Sbjct: 175 TDNQLKELATRY-PTVKDFWFDGTWDA 200
>pdb|2WVS|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|B Chain B, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
pdb|2WVS|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 Trapped
Covalent Intermediate From Bacteroides Thetaiotaomicron
In Complex With 2-Fluoro-Fucosyl Fluoride Using An E288q
Mutant
Length = 443
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 15/207 (7%)
Query: 105 FKYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWENPNSTVTKFMER 164
KY T E P + + ++G FIHWG++++P EW K + + + +
Sbjct: 8 LKYGATNEGKRQDPAMQKFRDNRLGAFIHWGLYAIPG--GEWNGKVYGGAAEWLKSWAKV 65
Query: 165 NYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNS 224
P + + FDA WA + G KYV +T+KHHEG+ LWPSKY +
Sbjct: 66 ---PADEWLKLMDQWNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-KYTV 121
Query: 225 MDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLY---VQDKANNFTTNQFVTMK 281
+ KRD++GEL A + D+HF Y S+ +W NP Y ++ K ++ ++F+
Sbjct: 122 ANTPYKRDILGELVKAYNDEGIDVHF--YFSVMDWSNPDYRYDIKSKEDSIAFSRFLEF- 178
Query: 282 TLPELIEIVQKYQPEV--IWSDGEWEA 306
T +L E+ +Y P V W DG W+A
Sbjct: 179 TDNQLKELATRY-PTVKDFWFDGTWDA 204
>pdb|2WVV|A Chain A, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
pdb|2WVV|C Chain C, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
pdb|2WVV|D Chain D, Crystal Structure Of An Alpha-L-Fucosidase Gh29 From
Bacteroides Thetaiotaomicron
Length = 450
Score = 94.4 bits (233), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/207 (31%), Positives = 103/207 (49%), Gaps = 15/207 (7%)
Query: 105 FKYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWENPNSTVTKFMER 164
KY T E P + + ++G FIHWG++++P EW K + + + +
Sbjct: 4 LKYGATNEGKRQDPAMQKFRDNRLGAFIHWGLYAIPG--GEWNGKVYGGAAEWLKSWAKV 61
Query: 165 NYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNS 224
P + + FDA WA + G KYV +T+KHHEG+ LWPSKY +
Sbjct: 62 ---PADEWLKLMDQWNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-KYTV 117
Query: 225 MDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLY---VQDKANNFTTNQFVTMK 281
+ KRD++GEL A + D+HF Y S+ +W NP Y ++ K ++ ++F+
Sbjct: 118 ANTPYKRDILGELVKAYNDEGIDVHF--YFSVMDWSNPDYRYDIKSKEDSIAFSRFLEF- 174
Query: 282 TLPELIEIVQKYQPEV--IWSDGEWEA 306
T +L E+ +Y P V W DG W+A
Sbjct: 175 TDNQLKELATRY-PTVKDFWFDGTWDA 200
>pdb|3MO4|A Chain A, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Atcc 15697
pdb|3MO4|B Chain B, The Crystal Structure Of An Alpha-(1-3,4)-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Atcc 15697
Length = 480
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 20/140 (14%)
Query: 169 GFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIG 228
G ++D A F D + W D L + G V+LT KHH+G+ LWPS+ + +++
Sbjct: 50 GLGHEDPAL-FNPRNVDVDQWXDALVAGGXAGVILTCKHHDGFCLWPSR--LTRHTVASS 106
Query: 229 P----KRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKA-NNFTTNQFVTMKTL 283
P K DLV E++ + RR + FG+Y S ++ Y + KA ++F Q
Sbjct: 107 PWREGKGDLVREVSESARRH--GLKFGVYLSPWDRTEESYGKGKAYDDFYVGQ------- 157
Query: 284 PELIEIVQKYQPEV-IWSDG 302
L E++ +Y P +W DG
Sbjct: 158 --LTELLTQYGPIFSVWLDG 175
>pdb|3UES|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
pdb|3UES|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis Complexed With
Deoxyfuconojirimycin
Length = 478
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 70/140 (50%), Gaps = 20/140 (14%)
Query: 169 GFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIG 228
G ++D A F D + W D L + G V+LT KHH+G+ LWPS+ + +++
Sbjct: 48 GLGHEDPAL-FNPRNVDVDQWMDALVAGGMAGVILTCKHHDGFCLWPSR--LTRHTVASS 104
Query: 229 P----KRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKA-NNFTTNQFVTMKTL 283
P K DLV E++ + RR + FG+Y S ++ Y + KA ++F Q
Sbjct: 105 PWREGKGDLVREVSESARRH--GLKFGVYLSPWDRTEESYGKGKAYDDFYVGQ------- 155
Query: 284 PELIEIVQKYQPEV-IWSDG 302
L E++ +Y P +W DG
Sbjct: 156 --LTELLTQYGPIFSVWLDG 173
>pdb|3UET|A Chain A, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
pdb|3UET|B Chain B, Crystal Structure Of Alpha-1,34-Fucosidase From
Bifidobacterium Longum Subsp. Infantis D172aE217A MUTANT
COMPLEXED WITH LACTO-N- Fucopentaose Ii
Length = 478
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 19/132 (14%)
Query: 169 GFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIG 228
G ++D A F D + W D L + G V+LT KHH+G+ LWPS+ + +++
Sbjct: 48 GLGHEDPAL-FNPRNVDVDQWMDALVAGGMAGVILTCKHHDGFCLWPSR--LTRHTVASS 104
Query: 229 P----KRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKA-NNFTTNQFVTMKTL 283
P K DLV E++ + RR + FG+Y S ++ Y + KA ++F Q
Sbjct: 105 PWREGKGDLVREVSESARRH--GLKFGVYLSPWDRTEESYGKGKAYDDFYVGQ------- 155
Query: 284 PELIEIVQKYQP 295
L E++ +Y P
Sbjct: 156 --LTELLTQYGP 165
>pdb|3EYP|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
pdb|3EYP|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase From
Bacteroides Thetaiotaomicron
Length = 469
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 7/104 (6%)
Query: 179 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA--FSWNSMDIGPKRDLVGE 236
F D W L ++G +LT+KH +G+ LWPSKY N+ K D+V E
Sbjct: 49 FNPTALDCRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNAAWKNGKGDVVRE 108
Query: 237 LATAIRRKYSDIHFGLY---HSLYEWFNPLYVQDKANNFTTNQF 277
A + G+Y H +E +PLY ++ + +Q
Sbjct: 109 FVDACEE--YGLKAGIYLGPHDRHEHLSPLYTTERYKEYYAHQL 150
>pdb|3GZA|A Chain A, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
pdb|3GZA|B Chain B, Crystal Structure Of Putative Alpha-L-Fucosidase
(Np_812709.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 1.60 A Resolution
Length = 443
Score = 34.3 bits (77), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 58/145 (40%), Gaps = 26/145 (17%)
Query: 179 FTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKY------AFSWNSMDIGPKRD 232
F + + W ++G K+ VLT+ H G+ LW S A W K D
Sbjct: 54 FNPTELNTDQWVQAAKAAGCKFAVLTATHETGFGLWQSDVNPYCLKAVKWRDG----KGD 109
Query: 233 LVGELATAIRRKYSDIHFGLYHSLY---EWFNPLYVQD-KANN---FTTNQFVTMKTLPE 285
+V + + R+ +GL +Y W + L + + KA F N+ K L E
Sbjct: 110 IVRDFVNSCRK------YGLQPGIYIGIRWNSLLGIHNFKAEGEGAFARNRQAWYKRLCE 163
Query: 286 --LIEIVQKYQP-EVIWSDGEWEAP 307
+ E+ +Y IW DG + P
Sbjct: 164 KXVTELCTRYGDLYXIWFDGGADDP 188
>pdb|3VRD|A Chain A, Crystal Structure Of Flavocytochrome C From
Thermochromatium Tepidum
Length = 174
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/59 (22%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 299 WSDGEWEAPAEYWKSREF--LAWLYNESPVKNTVVVNDRWCNTCLCKHGGYLTCEDKYN 355
+S +++ AEY+K + + + ++++ V ++D++C C + G L +D+Y+
Sbjct: 61 YSTADFQKMAEYFKQQTYQPVKQSFDKALVAKGTKLHDKYCEKCHVESGKPLADQDEYH 119
>pdb|3AVR|A Chain A, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H3K27ME3
PEPTIDE, N-Oxyalylglycine, And Ni(Ii)
pdb|3AVS|A Chain A, Catalytic Fragment Of UtxKDM6A BOUND WITH
N-Oxyalylglycine, And Ni(Ii)
Length = 531
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 7/74 (9%)
Query: 279 TMKTLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREF----LAWLYNESPVKNTVVVND 334
T+K L E + E+IW E PA Y E L ++ NES + T +V+
Sbjct: 429 TLKQCQTLREALIAAGKEIIWHGRTKEEPAHYCSICEVEVFDLLFVTNESNSRKTYIVH- 487
Query: 335 RWCNTCLCKHGGYL 348
C C K G L
Sbjct: 488 --CQDCARKTSGNL 499
>pdb|4H08|A Chain A, Crystal Structure Of A Putative Hydrolase (Bt3161) From
Bacteroides Thetaiotaomicron Vpi-5482 At 1.80 A
Resolution
Length = 200
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 33/138 (23%)
Query: 233 LVGELATAIRR-KYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQ 291
L+ ELA ++ K+ IHF N L+ D +T ++ K+ P+LI+I++
Sbjct: 62 LIEELAVVLKNTKFDVIHFN---------NGLHGFD----YTEEEY--DKSFPKLIKIIR 106
Query: 292 KYQP--EVIWSDGEWEAPAEYWKSREFLAWLYNESPVKNTVV----------VNDRWCNT 339
KY P ++IW++ P + + A + V+N + VND W
Sbjct: 107 KYAPKAKLIWAN---TTPVRTGEGXKEFAPITERLNVRNQIALKHINRASIEVNDLW--K 161
Query: 340 CLCKHGGYLTCEDKYNPV 357
+ H Y D +P+
Sbjct: 162 VVIDHPEYYAGGDGTHPI 179
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,375,632
Number of Sequences: 62578
Number of extensions: 552747
Number of successful extensions: 1339
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1299
Number of HSP's gapped (non-prelim): 21
length of query: 358
length of database: 14,973,337
effective HSP length: 100
effective length of query: 258
effective length of database: 8,715,537
effective search space: 2248608546
effective search space used: 2248608546
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)