Query psy110
Match_columns 358
No_of_seqs 195 out of 1034
Neff 5.0
Searched_HMMs 46136
Date Fri Aug 16 15:37:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy110.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/110hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3340|consensus 100.0 1E-85 2.2E-90 636.3 16.8 253 103-357 20-273 (454)
2 smart00812 Alpha_L_fucos Alpha 100.0 3.9E-75 8.5E-80 580.8 24.3 246 104-357 4-255 (384)
3 PF01120 Alpha_L_fucos: Alpha- 100.0 6.9E-69 1.5E-73 528.0 15.9 239 102-356 16-263 (346)
4 COG3669 Alpha-L-fucosidase [Ca 100.0 2.5E-43 5.4E-48 348.4 11.5 121 133-256 1-123 (430)
5 PF14871 GHL6: Hypothetical gl 99.7 2.5E-17 5.4E-22 143.3 11.2 111 185-302 1-132 (132)
6 PF02638 DUF187: Glycosyl hydr 98.1 3.4E-05 7.4E-10 75.9 11.5 112 186-301 21-161 (311)
7 PF14488 DUF4434: Domain of un 97.5 0.00033 7.2E-09 63.3 7.8 74 182-260 15-93 (166)
8 COG1649 Uncharacterized protei 96.4 0.022 4.9E-07 58.7 10.5 111 188-302 68-207 (418)
9 PF02065 Melibiase: Melibiase; 95.1 0.2 4.3E-06 51.4 10.9 108 187-304 61-193 (394)
10 COG3669 Alpha-L-fucosidase [Ca 93.1 0.82 1.8E-05 47.2 10.6 173 124-325 19-221 (430)
11 PF00834 Ribul_P_3_epim: Ribul 92.0 1 2.2E-05 42.1 9.0 93 185-304 68-175 (201)
12 PRK09722 allulose-6-phosphate 91.4 1 2.2E-05 43.0 8.5 95 185-304 70-178 (229)
13 PRK08745 ribulose-phosphate 3- 90.8 1.2 2.5E-05 42.4 8.1 94 185-304 73-180 (223)
14 PF01055 Glyco_hydro_31: Glyco 90.2 1.5 3.2E-05 44.7 8.9 100 178-304 76-180 (441)
15 cd06592 GH31_glucosidase_KIAA1 90.2 2.2 4.9E-05 41.7 9.8 105 187-304 33-165 (303)
16 cd06595 GH31_xylosidase_XylS-l 89.9 1.1 2.4E-05 43.6 7.4 90 178-303 67-158 (292)
17 PRK08091 ribulose-phosphate 3- 88.5 3 6.5E-05 39.9 9.1 94 185-304 79-188 (228)
18 PRK08005 epimerase; Validated 88.1 2.2 4.8E-05 40.3 7.8 94 185-304 69-172 (210)
19 PRK08883 ribulose-phosphate 3- 87.6 2.4 5.3E-05 40.0 7.8 94 185-304 69-176 (220)
20 KOG3111|consensus 85.9 6.1 0.00013 37.6 9.2 94 185-304 75-178 (224)
21 TIGR02402 trehalose_TreZ malto 85.6 7 0.00015 41.6 10.8 111 190-303 117-246 (542)
22 PF13200 DUF4015: Putative gly 84.8 8.2 0.00018 38.7 10.2 108 187-302 16-145 (316)
23 PF04476 DUF556: Protein of un 83.9 1.6 3.5E-05 42.1 4.6 69 171-256 121-189 (235)
24 cd06589 GH31 The enzymes of gl 83.7 2.6 5.7E-05 40.3 6.1 91 185-306 25-118 (265)
25 COG0036 Rpe Pentose-5-phosphat 83.4 5.4 0.00012 38.2 7.9 94 185-304 72-178 (220)
26 cd06593 GH31_xylosidase_YicI Y 81.9 9.4 0.0002 37.2 9.3 108 186-305 26-160 (308)
27 TIGR01515 branching_enzym alph 79.8 18 0.00038 39.2 11.2 112 187-302 160-296 (613)
28 PRK14057 epimerase; Provisiona 79.0 9.1 0.0002 37.3 7.9 94 185-304 86-202 (254)
29 cd06598 GH31_transferase_CtsZ 77.8 15 0.00031 36.3 9.2 96 178-304 63-164 (317)
30 cd06597 GH31_transferase_CtsY 76.5 12 0.00027 37.3 8.4 96 185-303 86-186 (340)
31 cd06601 GH31_lyase_GLase GLase 74.8 6.8 0.00015 39.3 6.0 23 280-303 110-132 (332)
32 cd06591 GH31_xylosidase_XylS X 74.7 20 0.00044 35.3 9.2 109 185-304 25-159 (319)
33 PRK05402 glycogen branching en 74.6 28 0.0006 38.5 11.1 111 187-302 269-405 (726)
34 cd06522 GH25_AtlA-like AtlA is 74.6 6.2 0.00014 36.0 5.3 50 184-254 13-62 (192)
35 PRK12313 glycogen branching en 74.6 24 0.00053 38.1 10.6 113 187-303 174-311 (633)
36 cd06543 GH18_PF-ChiA-like PF-C 73.2 40 0.00086 33.3 10.8 99 189-305 17-115 (294)
37 cd06599 GH31_glycosidase_Aec37 72.3 29 0.00062 34.2 9.7 109 186-303 31-167 (317)
38 TIGR02102 pullulan_Gpos pullul 71.7 74 0.0016 37.3 13.9 113 190-304 486-645 (1111)
39 PLN02960 alpha-amylase 70.8 29 0.00064 39.5 10.2 113 187-303 420-558 (897)
40 cd06603 GH31_GANC_GANAB_alpha 70.6 24 0.00053 35.0 8.8 27 178-204 57-84 (339)
41 PRK13125 trpA tryptophan synth 70.3 9.6 0.00021 36.2 5.6 55 180-256 84-138 (244)
42 cd06602 GH31_MGAM_SI_GAA This 69.3 55 0.0012 32.7 11.0 107 186-304 26-165 (339)
43 PRK02227 hypothetical protein; 69.3 5 0.00011 38.8 3.5 61 182-256 129-189 (238)
44 smart00642 Aamy Alpha-amylase 69.1 13 0.00028 33.5 5.9 59 191-252 26-88 (166)
45 PLN02447 1,4-alpha-glucan-bran 68.8 29 0.00063 38.9 9.6 113 187-303 254-392 (758)
46 cd06523 GH25_PlyB-like PlyB is 68.4 7.4 0.00016 35.1 4.2 46 189-254 14-59 (177)
47 PTZ00170 D-ribulose-5-phosphat 68.1 28 0.0006 32.9 8.2 96 184-304 75-182 (228)
48 cd06416 GH25_Lys1-like Lys-1 i 67.5 6.6 0.00014 35.7 3.7 49 187-256 13-61 (196)
49 TIGR02104 pulA_typeI pullulana 67.3 88 0.0019 33.8 12.7 114 188-304 168-322 (605)
50 PRK10658 putative alpha-glucos 67.0 29 0.00064 38.1 9.2 98 178-303 318-417 (665)
51 PLN02808 alpha-galactosidase 66.7 7.9 0.00017 39.9 4.5 55 193-256 63-119 (386)
52 PF00128 Alpha-amylase: Alpha 64.9 6.6 0.00014 36.3 3.3 59 190-252 10-70 (316)
53 PF00150 Cellulase: Cellulase 64.3 37 0.0008 31.3 8.2 101 185-302 22-127 (281)
54 cd06419 GH25_muramidase_2 Unch 64.3 11 0.00023 34.9 4.5 45 189-254 22-66 (190)
55 cd06413 GH25_muramidase_1 Unch 63.4 11 0.00023 34.3 4.3 45 189-254 17-61 (191)
56 PF02449 Glyco_hydro_42: Beta- 63.1 17 0.00037 36.4 6.1 141 180-339 3-173 (374)
57 cd06604 GH31_glucosidase_II_Ma 62.8 43 0.00093 33.2 8.8 104 186-303 26-158 (339)
58 TIGR03128 RuMP_HxlA 3-hexulose 62.8 15 0.00032 33.3 5.1 46 185-254 63-109 (206)
59 cd06524 GH25_YegX-like YegX is 62.2 11 0.00023 34.3 4.1 47 189-255 14-63 (194)
60 cd06600 GH31_MGAM-like This fa 61.6 29 0.00063 34.2 7.3 106 186-304 26-160 (317)
61 PRK03705 glycogen debranching 61.3 1.8E+02 0.004 32.0 13.9 147 189-338 184-375 (658)
62 PRK12568 glycogen branching en 61.2 70 0.0015 35.8 10.8 112 187-302 273-409 (730)
63 cd06415 GH25_Cpl1-like Cpl-1 l 60.0 17 0.00036 33.3 4.9 42 193-254 17-58 (196)
64 cd06525 GH25_Lyc-like Lyc mura 59.7 13 0.00029 33.4 4.2 45 189-254 14-58 (184)
65 PF01183 Glyco_hydro_25: Glyco 59.6 10 0.00023 33.8 3.5 47 189-256 12-58 (181)
66 PRK12677 xylose isomerase; Pro 59.4 24 0.00053 36.1 6.5 58 182-253 29-86 (384)
67 cd06412 GH25_CH-type CH-type ( 58.0 16 0.00034 33.5 4.4 44 192-255 17-60 (199)
68 TIGR00510 lipA lipoate synthas 56.9 30 0.00064 34.4 6.4 55 186-255 96-150 (302)
69 PRK14705 glycogen branching en 55.2 77 0.0017 37.5 10.2 127 172-302 751-905 (1224)
70 cd06594 GH31_glucosidase_YihQ 55.2 25 0.00055 34.7 5.7 109 186-304 25-166 (317)
71 PLN02763 hydrolase, hydrolyzin 52.7 35 0.00076 39.3 6.9 27 178-204 234-261 (978)
72 TIGR00696 wecB_tagA_cpsF bacte 52.4 1.1E+02 0.0025 27.9 9.1 20 284-303 90-109 (177)
73 PLN02692 alpha-galactosidase 51.9 21 0.00045 37.3 4.6 53 193-256 87-143 (412)
74 TIGR02103 pullul_strch alpha-1 51.8 70 0.0015 36.6 9.0 73 233-307 405-502 (898)
75 PRK14706 glycogen branching en 50.2 1.4E+02 0.003 32.8 10.7 112 187-302 171-307 (639)
76 cd04724 Tryptophan_synthase_al 50.2 33 0.00073 32.5 5.4 45 187-256 94-138 (242)
77 PRK10426 alpha-glucosidase; Pr 49.7 1.2E+02 0.0025 33.3 10.1 111 186-303 223-362 (635)
78 cd02879 GH18_plant_chitinase_c 49.3 49 0.0011 32.3 6.5 68 233-305 52-119 (299)
79 cd06416 GH25_Lys1-like Lys-1 i 48.8 36 0.00078 30.9 5.2 62 187-261 74-137 (196)
80 cd02930 DCR_FMN 2,4-dienoyl-Co 46.4 1.2E+02 0.0026 30.4 8.9 98 190-304 143-247 (353)
81 cd06414 GH25_LytC-like The Lyt 46.0 30 0.00066 31.4 4.3 49 189-255 15-63 (191)
82 cd00599 GH25_muramidase Endo-N 45.9 24 0.00053 31.4 3.6 46 189-255 14-59 (186)
83 TIGR02100 glgX_debranch glycog 45.8 1.2E+02 0.0027 33.5 9.6 147 188-337 188-380 (688)
84 cd06544 GH18_narbonin Narbonin 45.4 97 0.0021 29.9 7.8 66 236-307 59-124 (253)
85 TIGR00262 trpA tryptophan synt 44.9 52 0.0011 31.7 5.9 47 185-256 103-149 (256)
86 cd06533 Glyco_transf_WecG_TagA 44.5 1.4E+02 0.0029 26.9 8.2 32 285-322 90-121 (171)
87 PLN02446 (5-phosphoribosyl)-5- 43.9 36 0.00079 33.4 4.7 48 181-242 160-207 (262)
88 PLN02229 alpha-galactosidase 43.5 49 0.0011 34.7 5.8 52 193-256 94-150 (427)
89 COG1501 Alpha-glucosidases, fa 43.4 1.1E+02 0.0023 34.5 8.8 25 280-304 391-415 (772)
90 COG3867 Arabinogalactan endo-1 43.1 1.2E+02 0.0025 31.1 8.0 69 186-265 65-136 (403)
91 PF03808 Glyco_tran_WecB: Glyc 43.1 1.4E+02 0.003 26.7 8.1 34 283-322 90-123 (172)
92 PLN03231 putative alpha-galact 43.0 18 0.00038 37.0 2.4 23 232-256 86-108 (357)
93 PF13199 Glyco_hydro_66: Glyco 42.5 34 0.00074 37.0 4.6 116 185-303 119-267 (559)
94 TIGR02403 trehalose_treC alpha 42.4 51 0.0011 35.1 5.8 59 189-252 32-93 (543)
95 PLN02361 alpha-amylase 41.9 2.7E+02 0.0059 28.8 10.9 115 189-308 34-186 (401)
96 PRK13209 L-xylulose 5-phosphat 41.6 30 0.00066 32.6 3.7 56 186-253 101-157 (283)
97 smart00633 Glyco_10 Glycosyl h 41.2 86 0.0019 29.7 6.7 60 230-296 14-73 (254)
98 PRK04161 tagatose 1,6-diphosph 41.1 60 0.0013 33.0 5.8 89 187-300 110-206 (329)
99 PTZ00445 p36-lilke protein; Pr 40.9 65 0.0014 31.0 5.7 75 175-256 16-101 (219)
100 PRK10933 trehalose-6-phosphate 40.6 63 0.0014 34.6 6.3 57 188-252 37-99 (551)
101 TIGR02456 treS_nterm trehalose 39.2 61 0.0013 34.4 5.8 61 188-252 32-94 (539)
102 cd00019 AP2Ec AP endonuclease 39.1 20 0.00043 34.0 2.0 56 186-253 87-142 (279)
103 PRK12928 lipoyl synthase; Prov 38.7 83 0.0018 31.0 6.3 57 181-252 84-143 (290)
104 PRK13586 1-(5-phosphoribosyl)- 38.2 36 0.00079 32.3 3.6 34 177-210 139-172 (232)
105 PF10673 DUF2487: Protein of u 37.7 34 0.00073 30.7 3.1 23 187-209 74-96 (142)
106 PRK13523 NADPH dehydrogenase N 37.5 1.2E+02 0.0025 30.5 7.3 129 190-336 148-284 (337)
107 PF13380 CoA_binding_2: CoA bi 37.2 54 0.0012 27.6 4.2 37 187-250 69-105 (116)
108 PRK09856 fructoselysine 3-epim 37.2 31 0.00066 32.4 3.0 57 186-253 92-148 (275)
109 COG0106 HisA Phosphoribosylfor 37.0 60 0.0013 31.6 4.9 48 182-243 145-192 (241)
110 cd04747 OYE_like_5_FMN Old yel 37.0 70 0.0015 32.5 5.7 134 190-336 150-289 (361)
111 PRK08255 salicylyl-CoA 5-hydro 35.9 1.2E+02 0.0026 33.7 7.6 97 190-301 557-658 (765)
112 cd02932 OYE_YqiM_FMN Old yello 35.9 1.7E+02 0.0036 29.0 8.0 70 190-260 160-234 (336)
113 PRK14582 pgaB outer membrane N 34.1 6.6E+02 0.014 28.0 12.8 109 187-303 337-467 (671)
114 PRK13813 orotidine 5'-phosphat 33.9 71 0.0015 29.2 4.7 45 186-254 69-113 (215)
115 PF13460 NAD_binding_10: NADH( 33.9 61 0.0013 28.0 4.1 57 178-257 43-99 (183)
116 PF01261 AP_endonuc_2: Xylose 33.6 26 0.00057 30.5 1.8 92 186-303 73-166 (213)
117 COG0107 HisF Imidazoleglycerol 33.5 57 0.0012 31.9 4.1 30 182-211 153-182 (256)
118 PF07338 DUF1471: Protein of u 33.2 59 0.0013 24.4 3.4 22 187-208 22-43 (56)
119 PTZ00445 p36-lilke protein; Pr 33.0 2.5E+02 0.0054 27.1 8.2 98 187-303 81-187 (219)
120 TIGR01919 hisA-trpF 1-(5-phosp 32.5 60 0.0013 31.1 4.1 50 178-241 143-192 (243)
121 PRK14114 1-(5-phosphoribosyl)- 32.4 54 0.0012 31.4 3.8 47 181-241 141-187 (241)
122 PRK05481 lipoyl synthase; Prov 32.1 1.1E+02 0.0024 29.9 6.0 58 183-255 79-139 (289)
123 PF10566 Glyco_hydro_97: Glyco 31.1 1.8E+02 0.0038 28.8 7.1 62 185-255 33-94 (273)
124 cd04726 KGPDC_HPS 3-Keto-L-gul 30.9 1E+02 0.0022 27.5 5.2 41 188-252 68-108 (202)
125 TIGR03849 arch_ComA phosphosul 30.5 1E+02 0.0022 30.0 5.3 49 183-240 130-182 (237)
126 PRK11709 putative L-ascorbate 30.4 66 0.0014 32.6 4.2 30 181-212 258-287 (355)
127 cd04733 OYE_like_2_FMN Old yel 30.2 66 0.0014 31.9 4.1 68 190-258 155-227 (338)
128 cd03174 DRE_TIM_metallolyase D 30.2 2.4E+02 0.0051 26.2 7.7 73 231-323 114-187 (265)
129 PLN02334 ribulose-phosphate 3- 29.5 1.4E+02 0.003 27.9 5.9 48 185-255 76-123 (229)
130 COG1902 NemA NADH:flavin oxido 28.9 2.9E+02 0.0062 28.3 8.5 97 190-303 155-260 (363)
131 smart00481 POLIIIAc DNA polyme 28.6 81 0.0018 23.4 3.5 44 183-250 14-57 (67)
132 PRK13363 protocatechuate 4,5-d 28.6 1.1E+02 0.0023 31.1 5.3 65 187-253 78-175 (335)
133 PRK09505 malS alpha-amylase; R 28.4 1.3E+02 0.0028 33.4 6.4 65 186-252 232-310 (683)
134 cd02876 GH18_SI-CLP Stabilin-1 28.3 67 0.0014 31.4 3.8 66 231-301 50-115 (318)
135 PLN02617 imidazole glycerol ph 28.1 69 0.0015 34.5 4.1 39 172-210 425-464 (538)
136 PF11386 VERL: Vitelline envel 28.0 31 0.00067 27.9 1.1 18 126-143 23-40 (78)
137 PRK09441 cytoplasmic alpha-amy 27.3 1.4E+02 0.0029 31.2 6.0 63 187-252 25-99 (479)
138 PF12683 DUF3798: Protein of u 27.2 69 0.0015 31.8 3.6 91 185-303 118-208 (275)
139 PRK12399 tagatose 1,6-diphosph 27.1 2.2E+02 0.0049 28.9 7.2 89 187-300 108-204 (324)
140 COG1891 Uncharacterized protei 27.1 41 0.00089 31.8 1.9 69 171-256 121-189 (235)
141 COG1922 WecG Teichoic acid bio 26.9 3.6E+02 0.0078 26.4 8.4 58 227-304 114-171 (253)
142 cd00598 GH18_chitinase-like Th 26.6 3.7E+02 0.0081 23.8 8.1 68 232-306 49-116 (210)
143 PRK13307 bifunctional formalde 26.3 1.2E+02 0.0026 31.4 5.3 49 183-255 235-285 (391)
144 cd04732 HisA HisA. Phosphorib 26.2 1.1E+02 0.0024 28.1 4.6 30 182-211 144-173 (234)
145 COG1400 SEC65 Signal recogniti 26.2 1.1E+02 0.0023 25.8 4.0 64 178-244 26-89 (93)
146 PRK10785 maltodextrin glucosid 26.1 1.4E+02 0.003 32.3 6.0 62 187-252 182-244 (598)
147 PLN03244 alpha-amylase; Provis 26.1 1.4E+02 0.0029 34.2 5.9 71 231-303 440-533 (872)
148 PRK14511 maltooligosyl trehalo 26.1 1.5E+02 0.0033 34.0 6.4 64 185-252 21-87 (879)
149 PRK13210 putative L-xylulose 5 25.3 82 0.0018 29.5 3.7 56 186-253 96-152 (284)
150 TIGR00735 hisF imidazoleglycer 25.3 1.1E+02 0.0024 29.0 4.6 31 181-211 152-182 (254)
151 cd02929 TMADH_HD_FMN Trimethyl 25.2 1.4E+02 0.003 30.3 5.5 69 190-259 156-229 (370)
152 COG0320 LipA Lipoate synthase 25.2 68 0.0015 32.2 3.1 58 181-253 94-154 (306)
153 PRK09936 hypothetical protein; 25.1 1.9E+02 0.0041 29.1 6.2 63 178-256 28-96 (296)
154 TIGR03234 OH-pyruv-isom hydrox 25.0 49 0.0011 30.8 2.0 56 187-253 87-142 (254)
155 COG1523 PulA Type II secretory 24.8 1.8E+02 0.0038 32.6 6.5 113 190-304 206-362 (697)
156 PRK14024 phosphoribosyl isomer 24.5 86 0.0019 29.6 3.6 32 179-210 141-172 (241)
157 PF02677 DUF208: Uncharacteriz 24.0 50 0.0011 30.7 1.8 69 173-250 48-138 (176)
158 TIGR01233 lacG 6-phospho-beta- 23.9 1.4E+02 0.003 31.4 5.3 100 188-302 57-157 (467)
159 KOG1065|consensus 23.7 2E+02 0.0043 32.7 6.6 36 170-205 334-372 (805)
160 PRK02083 imidazole glycerol ph 23.6 93 0.002 29.4 3.7 31 180-210 149-179 (253)
161 cd04734 OYE_like_3_FMN Old yel 23.5 1.3E+02 0.0029 30.0 4.9 67 190-259 147-220 (343)
162 PLN00196 alpha-amylase; Provis 23.4 1.7E+02 0.0037 30.5 5.8 57 190-252 50-110 (428)
163 PRK15341 invasion lipoprotein 23.1 38 0.00083 29.6 0.9 37 7-44 8-46 (147)
164 PRK09997 hydroxypyruvate isome 22.8 1E+02 0.0022 28.9 3.7 57 186-253 87-143 (258)
165 cd02874 GH18_CFLE_spore_hydrol 22.7 1.1E+02 0.0024 29.6 4.2 67 235-306 48-115 (313)
166 PRK13111 trpA tryptophan synth 22.7 1.8E+02 0.0038 28.2 5.5 49 183-256 103-151 (258)
167 TIGR03356 BGL beta-galactosida 22.6 1.6E+02 0.0035 30.5 5.4 94 188-295 58-151 (427)
168 PF04741 InvH: InvH outer memb 22.4 41 0.00089 29.8 0.9 39 7-46 8-48 (147)
169 cd06546 GH18_CTS3_chitinase GH 22.3 1.9E+02 0.0042 27.7 5.6 74 238-322 65-138 (256)
170 cd06547 GH85_ENGase Endo-beta- 22.1 1.4E+02 0.003 30.2 4.8 16 235-252 49-64 (339)
171 cd02933 OYE_like_FMN Old yello 21.9 1.9E+02 0.0041 29.0 5.6 131 190-336 158-294 (338)
172 PF13069 DUF3933: Protein of u 21.9 57 0.0012 24.1 1.4 18 194-211 35-52 (53)
173 KOG0225|consensus 21.9 1.1E+02 0.0025 31.4 4.0 53 298-357 193-251 (394)
174 PLN02899 alpha-galactosidase 21.6 60 0.0013 35.7 2.2 22 233-256 114-135 (633)
175 cd02931 ER_like_FMN Enoate red 21.6 2E+02 0.0043 29.3 5.8 69 190-259 156-230 (382)
176 PRK14828 undecaprenyl pyrophos 21.4 3.8E+02 0.0083 26.1 7.5 31 230-262 56-88 (256)
177 PLN02428 lipoic acid synthase 21.4 2E+02 0.0042 29.5 5.7 53 185-252 134-186 (349)
178 TIGR01163 rpe ribulose-phospha 21.4 2.8E+02 0.0061 24.7 6.2 47 185-256 67-113 (210)
179 cd02872 GH18_chitolectin_chito 21.3 1.7E+02 0.0037 28.9 5.2 69 230-304 54-122 (362)
180 cd02803 OYE_like_FMN_family Ol 21.3 7.5E+02 0.016 23.9 11.5 69 189-258 146-219 (327)
181 TIGR00542 hxl6Piso_put hexulos 21.2 1.2E+02 0.0026 28.7 4.0 56 186-253 96-152 (279)
182 TIGR03217 4OH_2_O_val_ald 4-hy 21.2 3.7E+02 0.008 27.0 7.5 90 190-322 93-183 (333)
183 TIGR02631 xylA_Arthro xylose i 20.7 2.3E+02 0.005 29.0 6.1 56 183-252 31-86 (382)
184 PF14307 Glyco_tran_WbsX: Glyc 20.7 2.9E+02 0.0062 27.6 6.7 53 187-259 61-114 (345)
185 PRK13870 transcriptional regul 20.7 99 0.0021 29.2 3.2 66 186-258 54-120 (234)
186 PRK09852 cryptic 6-phospho-bet 20.4 1.7E+02 0.0036 31.0 5.1 76 190-276 77-152 (474)
187 cd08071 MPN_DUF2466 Mov34/MPN/ 20.1 1.9E+02 0.004 24.5 4.5 57 180-250 42-98 (113)
No 1
>KOG3340|consensus
Probab=100.00 E-value=1e-85 Score=636.28 Aligned_cols=253 Identities=67% Similarity=1.335 Sum_probs=247.5
Q ss_pred CCCCCCCCCcccCCCCChhhhhcCceEEEEecCCCccCCCCCcccccccCCCC-hhHHHHHHHhcCCCCchhhhhcCCCC
Q psy110 103 RDFKYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWENPN-STVTKFMERNYKPGFTYQDFAKDFTA 181 (358)
Q Consensus 103 ~~~~y~p~weSL~~~~~P~WF~DAKfGiFIHWG~ySvp~~g~EWy~~~~~g~~-~~y~~~~~~~y~p~~~Y~dfa~~Fnp 181 (358)
...+|+|+|+||+.||+|.||+|||||||+|||+||+|.+|+||+|.+|++.. +.|..|++++|+|.|.|+||+++|+|
T Consensus 20 p~tryqp~w~Sld~RPlP~w~d~akfgiflhWgv~Svp~~gSEWfWw~Wk~~~~P~yv~Fmd~ny~P~fty~df~~~Fta 99 (454)
T KOG3340|consen 20 PRTRYQPDWESLDLRPLPAWYDDAKFGIFLHWGVYSVPSFGSEWFWWYWKGEFGPKYVTFMDDNYKPGFTYADFASQFTA 99 (454)
T ss_pred CccccCCCchhhccCCCCcccccCcceeEEEeeeeecccccchhhhhhhhccCCCceeeeccccCCCCCchhhchhhhhh
Confidence 34789999999999999999999999999999999999999999999999876 77999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcccccC
Q psy110 182 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFN 261 (358)
Q Consensus 182 ~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~ 261 (358)
+.|+|.|||+++|++||||||||+|||||||||||++|.+|||++.|||||||+||+.|+||+ |||||+|||+++|+|
T Consensus 100 ~~fnA~qWa~lfq~sGaryvVLTsKHHeGFtlWPS~~SwnwNS~dvgpkrDiV~EL~~A~rk~--dirfGLY~SlfEwfh 177 (454)
T KOG3340|consen 100 TLFNASQWADLFQDSGARYVVLTSKHHEGFTLWPSEYSWNWNSMDVGPKRDIVGELASAIRKR--DIRFGLYYSLFEWFH 177 (454)
T ss_pred hhcCHHHHHHHHHhcCceEEEEeecccCceecCCCcCcccccccccCccccHHHHHHHHHHhc--CcceeEeecHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCCCCccccChHHHHHHHHhcCCCCCcEEEecccCCCCC
Q psy110 262 PLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWLYNESPVKNTVVVNDRWCNTCL 341 (358)
Q Consensus 262 p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~~p~~~~~~~e~~a~~yn~~~~~~~VvvNdR~g~~~~ 341 (358)
|.|..|+.+.+.++.|++++.++|+.||+++|.|++||.||.|+.|+.||++.+|+||+||.+|++++||||||||.|+.
T Consensus 178 plyl~d~~~~f~~~~f~~~k~lpem~eLVtkY~PeviWSDGew~~pd~YW~s~~FlaWLYN~SPVkd~VV~NDRWG~gt~ 257 (454)
T KOG3340|consen 178 PLYLDDKKHLFNTQHFPEEKTLPEMYELVTKYNPEVIWSDGEWEAPDDYWNSTEFLAWLYNDSPVKDTVVVNDRWGTGTM 257 (454)
T ss_pred hhhccchhhcccccccchhcchHHHHHHHHhcCCceEeeCCCcCCchhhhchhhhHHHhhcCCCccceEEecccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCCCCCCC
Q psy110 342 CKHGGYLTCEDKYNPV 357 (358)
Q Consensus 342 ~~hgd~~t~~d~~~p~ 357 (358)
|+|||||||+|||+|+
T Consensus 258 c~HGgfy~csD~~~Pg 273 (454)
T KOG3340|consen 258 CKHGGFYTCSDRYNPG 273 (454)
T ss_pred cccCCeeeccccCCCc
Confidence 9999999999999997
No 2
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=100.00 E-value=3.9e-75 Score=580.77 Aligned_cols=246 Identities=58% Similarity=1.172 Sum_probs=215.1
Q ss_pred CCCCCCCCcccCCCCChhhhhcCceEEEEecCCCccCCCCCcccccccCCCChhHHHHHHHhcCCCCchhhhhcCCCCCC
Q psy110 104 DFKYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWENPNSTVTKFMERNYKPGFTYQDFAKDFTAEF 183 (358)
Q Consensus 104 ~~~y~p~weSL~~~~~P~WF~DAKfGiFIHWG~ySvp~~g~EWy~~~~~g~~~~y~~~~~~~y~p~~~Y~dfa~~Fnp~~ 183 (358)
+++|+|+|+||+++++|+||+|||||||||||+|||||+++|||+.. .+ +....||.++|+|+++|++|+++|||++
T Consensus 4 ~~~~~~~~~sl~~~~~~~Wf~dakfGiFiHWG~ySv~~~~~eW~~~~-~~--~~~~~~~~~~~~~~~~Y~~~~~~F~p~~ 80 (384)
T smart00812 4 QGPYQPTWESLDKRPLPEWFRDAKFGIFIHWGVYSVPGFGGEWYWRQ-PN--SPEYKHHIKNYGPEFGYKDFAPQFTAEK 80 (384)
T ss_pred CCCCCCChhhhhcccChhHHhcCceEEEEEecccccccCCccccccC-CC--CcHHHHHHhccCCcccHHHHHhcCCchh
Confidence 47899999999999999999999999999999999999978999642 22 4455788999999999999999999999
Q ss_pred CCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcccccCcc
Q psy110 184 FDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPL 263 (358)
Q Consensus 184 FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~ 263 (358)
|||++||++||+|||||+|||||||||||||||++| +||+++++||||||+||++||||+ |||||+|||++||++|.
T Consensus 81 fD~~~Wa~~~k~AGakY~vlTaKHHDGF~lw~S~~t-~~n~~~~~pkrDiv~el~~A~rk~--Glk~G~Y~S~~DW~~p~ 157 (384)
T smart00812 81 FDPEEWADLFKKAGAKYVVLTAKHHDGFCLWDSKYS-NWNAVDTGPKRDLVGELADAVRKR--GLKFGLYHSLFDWFNPL 157 (384)
T ss_pred CCHHHHHHHHHHcCCCeEEeeeeecCCccccCCCCC-CCcccCCCCCcchHHHHHHHHHHc--CCeEEEEcCHHHhCCCc
Confidence 999999999999999999999999999999999999 999999999999999999999999 99999999999999999
Q ss_pred ccCc--cC-CCC---CchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCCCCccccChHHHHHHHHhcCCCCCcEEEecccC
Q psy110 264 YVQD--KA-NNF---TTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWLYNESPVKNTVVVNDRWC 337 (358)
Q Consensus 264 y~~d--~~-~~~---~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~~p~~~~~~~e~~a~~yn~~~~~~~VvvNdR~g 337 (358)
|... .. ... ...+|+++ +++||+|||++|+||+|||||+|..+..+|+..+|++++|+.+|...+||||+|||
T Consensus 158 y~~~~~~~~~~~~~~~~~~y~~~-~~~Ql~ELit~Ygpd~lWfD~~~~~~~~~~~~~~l~~~~~~~qP~~~~vvvn~R~~ 236 (384)
T smart00812 158 YAGPTSSDEDPDNWPRFQEFVDD-WLPQLRELVTRYKPDLLWFDGGWEAPDDYWRSKEFLAWLYNLSPVKDTVVVNDRWG 236 (384)
T ss_pred cccccccccccccchhHHHHHHH-HHHHHHHHHhcCCCceEEEeCCCCCccchhcHHHHHHHHHHhCCCCceEEEEcccc
Confidence 8642 11 111 12334322 49999999999999999999999888888899999999999766323579999998
Q ss_pred CCCCCCCCCccCCCCCCCCC
Q psy110 338 NTCLCKHGGYLTCEDKYNPV 357 (358)
Q Consensus 338 ~~~~~~hgd~~t~~d~~~p~ 357 (358)
+..+.+||++++.+++.|.
T Consensus 237 -~~~~~~g~~~~~~e~~~p~ 255 (384)
T smart00812 237 -GTGCKHGGFYTDEERGAPG 255 (384)
T ss_pred -ccCCCCCCcccCcccCCCC
Confidence 2345689999999998874
No 3
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=100.00 E-value=6.9e-69 Score=528.01 Aligned_cols=239 Identities=42% Similarity=0.873 Sum_probs=186.4
Q ss_pred CCCCCCCCCCcccCCCCChhhhhcCceEEEEecCCCccCCCC-CcccccccCCCChhHHHHHHHhcCCCCchhhhhcCCC
Q psy110 102 PRDFKYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFR-SEWFWKNWENPNSTVTKFMERNYKPGFTYQDFAKDFT 180 (358)
Q Consensus 102 ~~~~~y~p~weSL~~~~~P~WF~DAKfGiFIHWG~ySvp~~g-~EWy~~~~~g~~~~y~~~~~~~y~p~~~Y~dfa~~Fn 180 (358)
++.++|+|+|+||.+++.|+||+|||||||||||+||+|+.+ +|||.+.+. .+.....|.++|.+++++||
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~wf~dakfGiFiHwG~ys~~~~~~~eWy~~~~~--------~~~~~~~~~~~Y~~~~~~F~ 87 (346)
T PF01120_consen 16 QASQPYEPTWESLSKHPRPQWFRDAKFGIFIHWGPYSVPGWGYAEWYGRPMY--------IMGSYKIPEEEYGDFAKQFN 87 (346)
T ss_dssp ----SSSSSCCCHTTSHHHHHHHHH-EEEEE--SGGGTTTCCHGGGHHHHCC--------HHHHHTCCCSCGGGHGGG--
T ss_pred hhcCCCCCCccccccchhHHHHhhCceeEEEEECcccccccccccccccccc--------cccccccchhhHhhhhhhCC
Confidence 455789999999999999999999999999999999999987 799854221 11224578899999999999
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCccccc
Q psy110 181 AEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWF 260 (358)
Q Consensus 181 p~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~ 260 (358)
|++|||++||++||+|||||+|||||||||||||||++| +||++++++|||||+||++||||+ |||||+|||+.||+
T Consensus 88 p~~fD~dqW~~~ak~aGakY~VlTakHHDGF~LW~S~~t-~~~v~~~~~krDiv~El~~A~rk~--Glk~G~Y~S~~dw~ 164 (346)
T PF01120_consen 88 PTKFDADQWAKLAKDAGAKYVVLTAKHHDGFCLWPSKYT-DYNVVNSGPKRDIVGELADACRKY--GLKFGLYYSPWDWH 164 (346)
T ss_dssp -TT--HHHHHHHHHHTT-SEEEEEEE-TT--BSS--TT--SSBGGGGGGTS-HHHHHHHHHHHT--T-EEEEEEESSSCC
T ss_pred cccCCHHHHHHHHHHcCCCEEEeehhhcCccccCCCCCC-cccccCCCCCCCHHHHHHHHHHHc--CCeEEEEecchHhc
Confidence 999999999999999999999999999999999999999 899999999999999999999999 99999999999999
Q ss_pred CccccCccCCCC--------CchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCCCCccccChHHHHHHHHhcCCCCCcEEE
Q psy110 261 NPLYVQDKANNF--------TTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWLYNESPVKNTVVV 332 (358)
Q Consensus 261 ~p~y~~d~~~~~--------~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~~p~~~~~~~e~~a~~yn~~~~~~~Vvv 332 (358)
+|.|..+...+. ..++|+++++++||+||++||+||+|||||+|..+...|+..++++++++. +|+|||
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~~~~~~~~~~~~~~~~i~~~---qp~~ii 241 (346)
T PF01120_consen 165 HPDYPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGWPDPDEDWDSAELYNWIRKL---QPDVII 241 (346)
T ss_dssp CTTTTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTTSCCCTHHHHHHHHHHHHHH---STTSEE
T ss_pred CcccCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCCCccccccCHHHHHHHHHHh---CCeEEE
Confidence 998876543211 135678889999999999999999999999998766777788999999984 669999
Q ss_pred ecccCCCCCCCCCCccCCCCCCCC
Q psy110 333 NDRWCNTCLCKHGGYLTCEDKYNP 356 (358)
Q Consensus 333 NdR~g~~~~~~hgd~~t~~d~~~p 356 (358)
|+|++..... .+||.|. |+..|
T Consensus 242 ~~r~~~~~~~-~~d~~~~-E~~~~ 263 (346)
T PF01120_consen 242 NNRWGGNEQG-DGDYNTP-ERGIP 263 (346)
T ss_dssp ECCCSSCSSC-CBSCCEE-CTTBT
T ss_pred ecccCCCCCc-cccccch-hccCC
Confidence 9999986421 1266655 55554
No 4
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-43 Score=348.42 Aligned_cols=121 Identities=47% Similarity=0.924 Sum_probs=111.1
Q ss_pred ecCCCccCCCCCcccccccCCCChhHHHHHHHhcCC--CCchhhhhcCCCCCCCCHHHHHHHHHHcCCcEEEEeeeccCC
Q psy110 133 HWGVFSVPSFRSEWFWKNWENPNSTVTKFMERNYKP--GFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEG 210 (358)
Q Consensus 133 HWG~ySvp~~g~EWy~~~~~g~~~~y~~~~~~~y~p--~~~Y~dfa~~Fnp~~FDpdeWa~lak~AGAKYvVlTaKHHDG 210 (358)
|||++|||++++|||..++..+.....+||-++|+. .|+|++|+++|||++|||.+||++||+|||||+|+|||||||
T Consensus 1 hwgi~~vp~~~sewy~~~~~~e~~~~~~fh~nT~~dq~~f~~~~f~~~Ftae~wDP~eWar~fK~aGAKyvilvakHHDG 80 (430)
T COG3669 1 HWGIKSVPPFPSEWYLAYLYQEGSPFYHFHPNTYGDQEWFGGQEFPPRFTAENWDPREWARLFKEAGAKYVILVAKHHDG 80 (430)
T ss_pred CCCcccCCCCCchhHHHhhcccCCceEEeccccccCcccccccccccccCcccCCHHHHHHHHHHcCCcEEEEeeeecCC
Confidence 899999999999999544433334455888999865 499999999999999999999999999999999999999999
Q ss_pred CccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 211 YTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 211 FaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
||||||++| .|||+++|||||||+|+++|+|++ ||+||+|+|.
T Consensus 81 FaLw~t~ys-~wnsvk~GpKrDlvgela~Avr~q--GL~FGvy~s~ 123 (430)
T COG3669 81 FALWPTDYS-VWNSVKRGPKRDLVGELAKAVREQ--GLRFGVYLSG 123 (430)
T ss_pred eeecccccc-cccccccCCcccHHHHHHHHHHHc--CCeeeEeecc
Confidence 999999999 999999999999999999999999 9999999993
No 5
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=99.73 E-value=2.5e-17 Score=143.29 Aligned_cols=111 Identities=23% Similarity=0.396 Sum_probs=91.8
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcc-c----c
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLY-E----W 259 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~-D----W 259 (358)
||++|++.+|++|+.-+++-+|-|.|+|.|||++. . .+.+-+||++||+++|||++ |||+-+|++.. | -
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~-~---~hp~L~~Dllge~v~a~h~~--Girv~ay~~~~~d~~~~~ 74 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVG-P---RHPGLKRDLLGEQVEACHER--GIRVPAYFDFSWDEDAAE 74 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCC-c---CCCCCCcCHHHHHHHHHHHC--CCEEEEEEeeecChHHHH
Confidence 89999999999999999999999999999999985 2 45555899999999999999 99999999863 2 1
Q ss_pred cCccccC----cc-----C--C-----CCCchHHhhhhhHHHHHHHHhcCCCCEEEEeC
Q psy110 260 FNPLYVQ----DK-----A--N-----NFTTNQFVTMKTLPELIEIVQKYQPEVIWSDG 302 (358)
Q Consensus 260 ~~p~y~~----d~-----~--~-----~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg 302 (358)
.||+|.. +. . . ...+..|. +++.+|++|++++|++|.||||+
T Consensus 75 ~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~-e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 75 RHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYR-EFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred hCCceeeECCCCCCcCCCCcCCCCceecCCCccHH-HHHHHHHHHHHHcCCCCEEEecC
Confidence 4777653 11 0 0 11235675 79999999999999999999995
No 6
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=98.07 E-value=3.4e-05 Score=75.90 Aligned_cols=112 Identities=18% Similarity=0.266 Sum_probs=80.5
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCC-----CCCCChHHHHHHHHHhhcCCceEEEee--Cc--
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDI-----GPKRDLVGELATAIRRKYSDIHFGLYH--SL-- 256 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~-----gpkRDlV~Ela~A~Rk~~~GLk~GlYy--S~-- 256 (358)
-++-++.++++|+.-|++-.+- .|.+||+|++- +|..... .|+.|.++.++++|+|+ ||+|-..+ +.
T Consensus 21 ~~~~l~~l~~~~~N~V~~qVr~-~gda~Y~S~~~-p~s~~~~g~~~~~pg~DpL~~~I~eaHkr--GlevHAW~~~~~~~ 96 (311)
T PF02638_consen 21 IDEMLDDLKSAGFNAVFVQVRP-RGDALYPSDIE-PWSGYLTGKQGKDPGFDPLEFMIEEAHKR--GLEVHAWFRVGFNA 96 (311)
T ss_pred HHHHHHHHHHcCCCEEEEEEEe-CcEEEeccccc-ccccccCCCCCCCCCccHHHHHHHHHHHc--CCEEEEEEEeecCC
Confidence 3677888999999999999997 69999999997 5653322 25789999999999999 99998754 21
Q ss_pred cc-----ccCccccC--------cc----CCC-C--CchHHhhhhhHHHHHHHHhcCCCCEEEEe
Q psy110 257 YE-----WFNPLYVQ--------DK----ANN-F--TTNQFVTMKTLPELIEIVQKYQPEVIWSD 301 (358)
Q Consensus 257 ~D-----W~~p~y~~--------d~----~~~-~--~~~~y~~~~~~~Ql~ELi~rY~PDilWfD 301 (358)
.+ -.+|.+.. .. .+. | ...+=+.+++..-++||++||+.|.|=||
T Consensus 97 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~i~~~v~Eiv~~YdvDGIhlD 161 (311)
T PF02638_consen 97 PDVSHILKKHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDYIIDIVKEIVKNYDVDGIHLD 161 (311)
T ss_pred CchhhhhhcCchhheecCCCceeecccCCCCceEECCCCHHHHHHHHHHHHHHHhcCCCCeEEec
Confidence 00 12333211 00 000 0 12233567889999999999999999999
No 7
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=97.52 E-value=0.00033 Score=63.33 Aligned_cols=74 Identities=20% Similarity=0.393 Sum_probs=60.6
Q ss_pred CCCCHHHHHHH---HHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceE--EEeeCc
Q psy110 182 EFFDANHWADI---LASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHF--GLYHSL 256 (358)
Q Consensus 182 ~~FDpdeWa~l---ak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~--GlYyS~ 256 (358)
.++++++|-+. .|+.|++++|+.-.-..|.+-+||+.. +.+. .-+..|+|..+.++|.+. |||| |+|++.
T Consensus 15 ~~~~~~~W~~~~~~m~~~GidtlIlq~~~~~~~~~yps~~~-~~~~--~~~~~d~l~~~L~~A~~~--Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 15 QNWTPAQWREEFRAMKAIGIDTLILQWTGYGGFAFYPSKLS-PGGF--YMPPVDLLEMILDAADKY--GMKVFVGLYFDP 89 (166)
T ss_pred cCCCHHHHHHHHHHHHHcCCcEEEEEEeecCCcccCCcccc-Cccc--cCCcccHHHHHHHHHHHc--CCEEEEeCCCCc
Confidence 57999999765 578999999999999999999999994 3332 226889999999999999 9995 889986
Q ss_pred cccc
Q psy110 257 YEWF 260 (358)
Q Consensus 257 ~DW~ 260 (358)
-.|.
T Consensus 90 ~~w~ 93 (166)
T PF14488_consen 90 DYWD 93 (166)
T ss_pred hhhh
Confidence 4443
No 8
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.43 E-value=0.022 Score=58.69 Aligned_cols=111 Identities=16% Similarity=0.208 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccC-----CCCCCChHHHHHHHHHhhcCCceEEEeeC-------
Q psy110 188 HWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMD-----IGPKRDLVGELATAIRRKYSDIHFGLYHS------- 255 (358)
Q Consensus 188 eWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~-----~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS------- 255 (358)
+-++.+++.|+.=+.+..+ -+|.|||+|++- +|.... ..|+.|.++++++.+||+ ||++-.-+.
T Consensus 68 ~~ld~l~~ln~NTv~~qV~-~~G~~lypS~~~-p~s~~~~~~~~~~~g~DpLa~~I~~AHkr--~l~v~aWf~~~~~a~~ 143 (418)
T COG1649 68 DILDDLQKLNFNTVYPQVW-NDGDALYPSAVL-PWSDGLPGVLGVDPGYDPLAFVIAEAHKR--GLEVHAWFNPYRMAPP 143 (418)
T ss_pred HHHHHHHHcCCceeEEEEe-cCcccccccccc-ccccCcCcccCCCCCCChHHHHHHHHHhc--CCeeeechhhcccCCC
Confidence 3456678899999999888 689999999998 665443 346899999999999999 999977332
Q ss_pred --cccccCccccCccC--------C----C-C--CchHHhhhhhHHHHHHHHhcCCCCEEEEeC
Q psy110 256 --LYEWFNPLYVQDKA--------N----N-F--TTNQFVTMKTLPELIEIVQKYQPEVIWSDG 302 (358)
Q Consensus 256 --~~DW~~p~y~~d~~--------~----~-~--~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg 302 (358)
...=.+|.+..... . . + ....=+.+++..-+.|++++|+.|.|=||-
T Consensus 144 ~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq~~i~~lv~evV~~YdvDGIQfDd 207 (418)
T COG1649 144 TSPLTKRHPHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQDFITSLVVEVVRNYDVDGIQFDD 207 (418)
T ss_pred CChhHhhCCCCcccCCCCeEEEecCCceeeeEeCCCChHHHHHHHHHHHHHHhCCCCCceecce
Confidence 11111222211110 0 0 0 011123456778899999999999887774
No 9
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=95.05 E-value=0.2 Score=51.35 Aligned_cols=108 Identities=20% Similarity=0.246 Sum_probs=66.4
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCCCcc----CCCCCCCCccccC-CCCCCChHHHHHHHHHhhcCCceEEEeeCcc----
Q psy110 187 NHWADILASSGAKYVVLTSKHHEGYTL----WPSKYAFSWNSMD-IGPKRDLVGELATAIRRKYSDIHFGLYHSLY---- 257 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDGFaL----WdSk~t~~~ns~~-~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~---- 257 (358)
.+-++.++++|++++|+= ||+.- +.+.+. +|..-. .=| +=+++|++.+++. |||+|+|+.+.
T Consensus 61 ~~~a~~~~~~G~e~fviD----DGW~~~r~~d~~~~G-dW~~~~~kFP--~Gl~~l~~~i~~~--Gmk~GlW~ePe~v~~ 131 (394)
T PF02065_consen 61 LELADAAAELGYEYFVID----DGWFGGRDDDNAGLG-DWEPDPKKFP--NGLKPLADYIHSL--GMKFGLWFEPEMVSP 131 (394)
T ss_dssp HHHHHHHHHHT-SEEEE-----SSSBCTESTTTSTTS-BECBBTTTST--THHHHHHHHHHHT--T-EEEEEEETTEEES
T ss_pred HHHHHHHHHhCCEEEEEc----CccccccCCCcccCC-ceeEChhhhC--CcHHHHHHHHHHC--CCeEEEEeccccccc
Confidence 456788899999999984 45432 123334 665321 112 3499999999999 99999998531
Q ss_pred --c--ccCccccCccC--------C----CCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 258 --E--WFNPLYVQDKA--------N----NFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 258 --D--W~~p~y~~d~~--------~----~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
+ -.||+|.-... + ++ +.+-+.+++.+++..|+.+|+.|.|=.|+..
T Consensus 132 ~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~-~~pev~~~l~~~i~~ll~~~gidYiK~D~n~ 193 (394)
T PF02065_consen 132 DSDLYREHPDWVLRDPGRPPTLGRNQYVLDL-SNPEVRDYLFEVIDRLLREWGIDYIKWDFNR 193 (394)
T ss_dssp SSCHCCSSBGGBTCCTTSE-ECBTTBEEB-T-TSHHHHHHHHHHHHHHHHHTT-SEEEEE-TS
T ss_pred hhHHHHhCccceeecCCCCCcCcccceEEcC-CCHHHHHHHHHHHHHHHHhcCCCEEEecccc
Confidence 1 23555532110 1 11 2233457888899999999999999888764
No 10
>COG3669 Alpha-L-fucosidase [Carbohydrate transport and metabolism]
Probab=93.10 E-value=0.82 Score=47.17 Aligned_cols=173 Identities=17% Similarity=0.207 Sum_probs=93.8
Q ss_pred hcCceEEEEecCCCccCCCCCccccc-----ccCCCC--h-hHH---------------HHHHH--hcCCCCchhhhhcC
Q psy110 124 DEAKVGIFIHWGVFSVPSFRSEWFWK-----NWENPN--S-TVT---------------KFMER--NYKPGFTYQDFAKD 178 (358)
Q Consensus 124 ~DAKfGiFIHWG~ySvp~~g~EWy~~-----~~~g~~--~-~y~---------------~~~~~--~y~p~~~Y~dfa~~ 178 (358)
.+.+++.|+|+++.+..- .||+.. .+..+. + +.. +||.. .|+. .|. .
T Consensus 19 ~~~e~~~~~~fh~nT~~d--q~~f~~~~f~~~Ftae~wDP~eWar~fK~aGAKyvilvakHHDGFaLw~t--~ys----~ 90 (430)
T COG3669 19 LYQEGSPFYHFHPNTYGD--QEWFGGQEFPPRFTAENWDPREWARLFKEAGAKYVILVAKHHDGFALWPT--DYS----V 90 (430)
T ss_pred hcccCCceEEeccccccC--cccccccccccccCcccCCHHHHHHHHHHcCCcEEEEeeeecCCeeeccc--ccc----c
Confidence 457999999999999864 477621 112211 1 111 12211 0111 343 3
Q ss_pred CCCCCCCH-----HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEe
Q psy110 179 FTAEFFDA-----NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 179 Fnp~~FDp-----deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY 253 (358)
||..+--| .+|++++++.|+++.|-... +.--|+.......++-..+|.-| ++++-+.. -+.+
T Consensus 91 wnsvk~GpKrDlvgela~Avr~qGL~FGvy~s~---a~h~W~~~~g~~~~~d~~dp~y~----~~~~~~~~-----~~~~ 158 (430)
T COG3669 91 WNSVKRGPKRDLVGELAKAVREQGLRFGVYLSG---AWHPWDFHSGYYADSDEKDPNYY----LAQLQELL-----SGAN 158 (430)
T ss_pred ccccccCCcccHHHHHHHHHHHcCCeeeEeecc---CcccccccCCccccccccCcccc----cccHHHHh-----cccc
Confidence 34333333 79999999999999997652 23347766653334444455544 33333322 3344
Q ss_pred eCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCCCCccccChHHHHHHHHhcCC
Q psy110 254 HSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWLYNESP 325 (358)
Q Consensus 254 yS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~~p~~~~~~~e~~a~~yn~~~ 325 (358)
++..+=..+.+.+...+ ....++ ++.+.++-|++.+|+||++.||.. .. + .-.++.|+||..+
T Consensus 159 ~~~~~~~d~~~~dnaw~--~~~~~~-~~wl~r~~e~i~~y~P~~vyFd~w-g~----~-~~a~a~y~~~r~p 221 (430)
T COG3669 159 YGNAGPFDEVWLDNAWG--NGPAKV-NYWLARWFELIRRYQPDLVYFDWW-GT----I-LWATAEYGYNRWP 221 (430)
T ss_pred cccCCCCcchhhccccc--CChHHH-HHHHHHHHHHHHhhCCCeEEecch-hh----h-HHhhhhhccccCc
Confidence 44332111111111111 123555 467889999999999999999974 22 1 2345556666444
No 11
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=92.05 E-value=1 Score=42.12 Aligned_cols=93 Identities=22% Similarity=0.374 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc---ccccC
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL---YEWFN 261 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~---~DW~~ 261 (358)
||+.|++.++++|+.++.+ |.+ .+ +-+.++.+.+|++ |+|+|+=..+ .+-..
T Consensus 68 ~P~~~i~~~~~~g~~~i~~---H~E--------~~------------~~~~~~i~~ik~~--g~k~GialnP~T~~~~~~ 122 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITF---HAE--------AT------------EDPKETIKYIKEA--GIKAGIALNPETPVEELE 122 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEE---EGG--------GT------------TTHHHHHHHHHHT--TSEEEEEE-TTS-GGGGT
T ss_pred cHHHHHHHHHhcCCCEEEE---ccc--------ch------------hCHHHHHHHHHHh--CCCEEEEEECCCCchHHH
Confidence 7899999999999998865 332 11 2245789999999 9999997654 22211
Q ss_pred ccccC--------ccCCCCCchHHhhhhhHHH---HHHHHhcCCCCE-EEEeCCC
Q psy110 262 PLYVQ--------DKANNFTTNQFVTMKTLPE---LIEIVQKYQPEV-IWSDGEW 304 (358)
Q Consensus 262 p~y~~--------d~~~~~~~~~y~~~~~~~Q---l~ELi~rY~PDi-lWfDg~w 304 (358)
+ |.. .-...+..+.|. +.++++ +++++.+.+.++ |+.||+-
T Consensus 123 ~-~l~~vD~VlvMsV~PG~~Gq~f~-~~~~~KI~~l~~~~~~~~~~~~I~vDGGI 175 (201)
T PF00834_consen 123 P-YLDQVDMVLVMSVEPGFGGQKFI-PEVLEKIRELRKLIPENGLDFEIEVDGGI 175 (201)
T ss_dssp T-TGCCSSEEEEESS-TTTSSB--H-GGHHHHHHHHHHHHHHHTCGSEEEEESSE
T ss_pred H-HhhhcCEEEEEEecCCCCccccc-HHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 1 111 011234566664 344454 556667766664 8999984
No 12
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=91.41 E-value=1 Score=43.01 Aligned_cols=95 Identities=25% Similarity=0.333 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc---ccccC
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL---YEWFN 261 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~---~DW~~ 261 (358)
||++|++.+.++||.++.+=++-. ..+ +..+.+.+|+. |+|+|+=..+ .+...
T Consensus 70 ~P~~~i~~~~~aGad~it~H~Ea~---------------------~~~-~~~~i~~Ik~~--G~kaGlalnP~T~~~~l~ 125 (229)
T PRK09722 70 DPQDYIDQLADAGADFITLHPETI---------------------NGQ-AFRLIDEIRRA--GMKVGLVLNPETPVESIK 125 (229)
T ss_pred CHHHHHHHHHHcCCCEEEECccCC---------------------cch-HHHHHHHHHHc--CCCEEEEeCCCCCHHHHH
Confidence 799999999999999887744411 012 34678999999 9999997764 22221
Q ss_pred cccc-Cc------cCCCCCchHHhhhhhHH---HHHHHHhcCCCCE-EEEeCCC
Q psy110 262 PLYV-QD------KANNFTTNQFVTMKTLP---ELIEIVQKYQPEV-IWSDGEW 304 (358)
Q Consensus 262 p~y~-~d------~~~~~~~~~y~~~~~~~---Ql~ELi~rY~PDi-lWfDg~w 304 (358)
+.-. -| -...+.++.|. +.++. ++++++.+.+.++ |+.||+-
T Consensus 126 ~~l~~vD~VLvMsV~PGf~GQ~fi-~~~l~KI~~lr~~~~~~~~~~~IeVDGGI 178 (229)
T PRK09722 126 YYIHLLDKITVMTVDPGFAGQPFI-PEMLDKIAELKALRERNGLEYLIEVDGSC 178 (229)
T ss_pred HHHHhcCEEEEEEEcCCCcchhcc-HHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 1100 01 11234456664 33344 5556666767665 8999984
No 13
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=90.78 E-value=1.2 Score=42.42 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc---ccccC
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL---YEWFN 261 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~---~DW~~ 261 (358)
||+.|++.+.++||.++.+=++- + .+ +.+..+.+|+. |+|.|+=..+ .+...
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~Ea-----------~-----------~~-~~~~l~~Ir~~--g~k~GlalnP~T~~~~i~ 127 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPEA-----------S-----------RH-VHRTIQLIKSH--GCQAGLVLNPATPVDILD 127 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEcccC-----------c-----------cc-HHHHHHHHHHC--CCceeEEeCCCCCHHHHH
Confidence 79999999999999998774441 1 12 45788999999 9999997654 22111
Q ss_pred cccc-------CccCCCCCchHHhhhhhH---HHHHHHHhcCCCCE-EEEeCCC
Q psy110 262 PLYV-------QDKANNFTTNQFVTMKTL---PELIEIVQKYQPEV-IWSDGEW 304 (358)
Q Consensus 262 p~y~-------~d~~~~~~~~~y~~~~~~---~Ql~ELi~rY~PDi-lWfDg~w 304 (358)
+.-. ..-...|.++.|. +.++ .++++++.+.+.++ |+.||+-
T Consensus 128 ~~l~~vD~VlvMtV~PGf~GQ~fi-~~~l~KI~~l~~~~~~~~~~~~IeVDGGI 180 (223)
T PRK08745 128 WVLPELDLVLVMSVNPGFGGQAFI-PSALDKLRAIRKKIDALGKPIRLEIDGGV 180 (223)
T ss_pred HHHhhcCEEEEEEECCCCCCcccc-HHHHHHHHHHHHHHHhcCCCeeEEEECCC
Confidence 1100 0011234455553 2333 45667777777665 9999984
No 14
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=90.23 E-value=1.5 Score=44.66 Aligned_cols=100 Identities=18% Similarity=0.098 Sum_probs=55.5
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEE----
Q psy110 178 DFTAEFF-DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGL---- 252 (358)
Q Consensus 178 ~Fnp~~F-DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~Gl---- 252 (358)
.|++++| ||+++++.+++.|.|.++.+.=+- . ... + .-++.+.++++ |+=+--
T Consensus 76 ~~d~~~FPd~~~~~~~l~~~G~~~~~~~~P~v----------~------~~~---~-~~~~~~~~~~~--~~~v~~~~g~ 133 (441)
T PF01055_consen 76 TWDPERFPDPKQMIDELHDQGIKVVLWVHPFV----------S------NDS---P-DYENYDEAKEK--GYLVKNPDGS 133 (441)
T ss_dssp -B-TTTTTTHHHHHHHHHHTT-EEEEEEESEE----------E------TTT---T-B-HHHHHHHHT--T-BEBCTTSS
T ss_pred ccccccccchHHHHHhHhhCCcEEEEEeeccc----------C------CCC---C-cchhhhhHhhc--CceeecccCC
Confidence 5678888 999999999999999776554321 1 001 1 34566777777 553310
Q ss_pred eeCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 253 YHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 253 YyS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
-+...-|.... ..-+++..+ ..+++..+++++++.|+.|.+|+|.+-
T Consensus 134 ~~~~~~w~g~~----~~~Dftnp~-a~~w~~~~~~~~~~~~Gvdg~w~D~~E 180 (441)
T PF01055_consen 134 PYIGRVWPGKG----GFIDFTNPE-ARDWWKEQLKELLDDYGVDGWWLDFGE 180 (441)
T ss_dssp B-EEEETTEEE----EEB-TTSHH-HHHHHHHHHHHHHTTST-SEEEEESTT
T ss_pred cccccccCCcc----cccCCCChh-HHHHHHHHHHHHHhccCCceEEeecCC
Confidence 00000021000 011222223 245667899999999999999999963
No 15
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=90.17 E-value=2.2 Score=41.72 Aligned_cols=105 Identities=14% Similarity=0.182 Sum_probs=62.3
Q ss_pred HHHHHHHHHcCCcEEEEee--eccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcc-cccCc-
Q psy110 187 NHWADILASSGAKYVVLTS--KHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLY-EWFNP- 262 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTa--KHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~-DW~~p- 262 (358)
.+-++.+++.|...=++.. .+.++++-| .|+..+- | | .++|++..++. |+|++++..+. .=..+
T Consensus 33 ~~~~~~~~~~~iP~d~i~iD~~w~~~~g~f------~~d~~~F-P--d-p~~mi~~l~~~--G~k~~l~i~P~i~~~s~~ 100 (303)
T cd06592 33 LNYAQEIIDNGFPNGQIEIDDNWETCYGDF------DFDPTKF-P--D-PKGMIDQLHDL--GFRVTLWVHPFINTDSEN 100 (303)
T ss_pred HHHHHHHHHcCCCCCeEEeCCCccccCCcc------ccChhhC-C--C-HHHHHHHHHHC--CCeEEEEECCeeCCCCHH
Confidence 5667777888865444433 455444322 2222211 2 4 68999999999 99999976541 10011
Q ss_pred -------cc-cCccC--C--------------CCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 263 -------LY-VQDKA--N--------------NFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 263 -------~y-~~d~~--~--------------~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
.| ..+.. . +++..+ ..+++..++++|+.+++.|.+|+|++-
T Consensus 101 ~~e~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~-a~~w~~~~~~~~~~~~Gvdg~w~D~~E 165 (303)
T cd06592 101 FREAVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPE-AVDWFLSRLKSLQEKYGIDSFKFDAGE 165 (303)
T ss_pred HHhhhhCCeEEECCCCCCCcccceecCCcceEeCCCHH-HHHHHHHHHHHHHHHhCCcEEEeCCCC
Confidence 11 11100 0 122222 246778899999999999999999973
No 16
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=89.88 E-value=1.1 Score=43.61 Aligned_cols=90 Identities=16% Similarity=0.225 Sum_probs=53.2
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEe-eC
Q psy110 178 DFTAEFF-DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY-HS 255 (358)
Q Consensus 178 ~Fnp~~F-DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY-yS 255 (358)
+|++++| ||++.++.+++.|+|.++.+-=|. ++. +..+...| -+|+. |++...- ..
T Consensus 67 t~d~~~FPdp~~mi~~Lh~~G~k~v~~v~P~~--------~~~---------~~~~~y~~---~~~~~--~~~~~~~~~~ 124 (292)
T cd06595 67 SWNRKLFPDPEKLLQDLHDRGLKVTLNLHPAD--------GIR---------AHEDQYPE---MAKAL--GVDPATEGPI 124 (292)
T ss_pred EEChhcCCCHHHHHHHHHHCCCEEEEEeCCCc--------ccC---------CCcHHHHH---HHHhc--CCCcccCCeE
Confidence 4566666 899999999999999998772221 011 11122333 33444 4432110 01
Q ss_pred cccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 256 LYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 256 ~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
.+|+.+| ++. +.+..++.+.+.+++.|.+|.|.+
T Consensus 125 ~~D~tnp-------------~a~-~~w~~~~~~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 125 LFDLTNP-------------KFM-DAYFDNVHRPLEKQGVDFWWLDWQ 158 (292)
T ss_pred EecCCCH-------------HHH-HHHHHHHHHHHHhcCCcEEEecCC
Confidence 2343333 232 344577777888899999999975
No 17
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=88.53 E-value=3 Score=39.91 Aligned_cols=94 Identities=18% Similarity=0.126 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCc--eEEEeeCc---ccc
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDI--HFGLYHSL---YEW 259 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GL--k~GlYyS~---~DW 259 (358)
||++|++.+.+|||.++.+=.+ .+ .+ +.+..+.+|+. |+ |.|+=..+ .+.
T Consensus 79 ~P~~~i~~~~~aGad~It~H~E-----------a~-----------~~-~~~~l~~Ik~~--g~~~kaGlalnP~Tp~~~ 133 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVE-----------QT-----------HD-LALTIEWLAKQ--KTTVLIGLCLCPETPISL 133 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEccc-----------Cc-----------cc-HHHHHHHHHHC--CCCceEEEEECCCCCHHH
Confidence 7999999999999998876433 11 12 45788999999 88 99997664 222
Q ss_pred cCcccc-Cc------cCCCCCchHHhhhhhH---HHHHHHHhcCCCCE-EEEeCCC
Q psy110 260 FNPLYV-QD------KANNFTTNQFVTMKTL---PELIEIVQKYQPEV-IWSDGEW 304 (358)
Q Consensus 260 ~~p~y~-~d------~~~~~~~~~y~~~~~~---~Ql~ELi~rY~PDi-lWfDg~w 304 (358)
..|.-. -| -...|.++.|. +.++ .++++++.+.+.++ |+.||+-
T Consensus 134 i~~~l~~vD~VLiMtV~PGfgGQ~f~-~~~l~KI~~lr~~~~~~~~~~~IeVDGGI 188 (228)
T PRK08091 134 LEPYLDQIDLIQILTLDPRTGTKAPS-DLILDRVIQVENRLGNRRVEKLISIDGSM 188 (228)
T ss_pred HHHHHhhcCEEEEEEECCCCCCcccc-HHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 211100 00 01123345553 2233 45667777777765 8999984
No 18
>PRK08005 epimerase; Validated
Probab=88.08 E-value=2.2 Score=40.28 Aligned_cols=94 Identities=14% Similarity=0.231 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc---ccccC
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL---YEWFN 261 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~---~DW~~ 261 (358)
||+.|++.+.++||.++.+=.+ .+ .+ +.++.+.+|+. |+|.|+=..+ .+...
T Consensus 69 ~P~~~i~~~~~~gad~It~H~E-----------a~-----------~~-~~~~l~~Ik~~--G~k~GlAlnP~Tp~~~i~ 123 (210)
T PRK08005 69 SPQRWLPWLAAIRPGWIFIHAE-----------SV-----------QN-PSEILADIRAI--GAKAGLALNPATPLLPYR 123 (210)
T ss_pred CHHHHHHHHHHhCCCEEEEccc-----------Cc-----------cC-HHHHHHHHHHc--CCcEEEEECCCCCHHHHH
Confidence 6999999999999998776433 11 12 45788999999 9999997664 22111
Q ss_pred c-----ccc--CccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 262 P-----LYV--QDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 262 p-----~y~--~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
+ ++. ..-...+.++.|. ..++++++||-.....-.|+.||+-
T Consensus 124 ~~l~~vD~VlvMsV~PGf~GQ~f~-~~~~~KI~~l~~~~~~~~I~VDGGI 172 (210)
T PRK08005 124 YLALQLDALMIMTSEPDGRGQQFI-AAMCEKVSQSREHFPAAECWADGGI 172 (210)
T ss_pred HHHHhcCEEEEEEecCCCccceec-HHHHHHHHHHHHhcccCCEEEECCC
Confidence 1 100 0112234556664 4566677766543322249999984
No 19
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=87.64 E-value=2.4 Score=40.00 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc---ccccC
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL---YEWFN 261 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~---~DW~~ 261 (358)
||+.|++.+.++||.++.+=++- + +-+.++.+.+|+. |+|.|+-..+ .+...
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea-----------~------------~~~~~~l~~ik~~--g~k~GlalnP~Tp~~~i~ 123 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEA-----------S------------EHVDRTLQLIKEH--GCQAGVVLNPATPLHHLE 123 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccC-----------c------------ccHHHHHHHHHHc--CCcEEEEeCCCCCHHHHH
Confidence 79999999999999998774441 1 1256788999999 9999997764 22211
Q ss_pred cccc-Cc------cCCCCCchHHhhhhh---HHHHHHHHhcCCCCE-EEEeCCC
Q psy110 262 PLYV-QD------KANNFTTNQFVTMKT---LPELIEIVQKYQPEV-IWSDGEW 304 (358)
Q Consensus 262 p~y~-~d------~~~~~~~~~y~~~~~---~~Ql~ELi~rY~PDi-lWfDg~w 304 (358)
+.-. -| -...+..+.|. ... ..++++++.+.+.++ |+.||+-
T Consensus 124 ~~l~~~D~vlvMtV~PGfgGq~fi-~~~lekI~~l~~~~~~~~~~~~I~vdGGI 176 (220)
T PRK08883 124 YIMDKVDLILLMSVNPGFGGQSFI-PHTLDKLRAVRKMIDESGRDIRLEIDGGV 176 (220)
T ss_pred HHHHhCCeEEEEEecCCCCCceec-HhHHHHHHHHHHHHHhcCCCeeEEEECCC
Confidence 1100 00 01123334443 122 456677777767665 8899984
No 20
>KOG3111|consensus
Probab=85.85 E-value=6.1 Score=37.55 Aligned_cols=94 Identities=23% Similarity=0.329 Sum_probs=62.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc---cc---
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL---YE--- 258 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~---~D--- 258 (358)
+|++|++-+.+|||.-+.+-.+ .+ . + +.++++-.|+. |||+|+-.-+ .+
T Consensus 75 ~Peq~V~~~a~agas~~tfH~E-----------~~------q-----~-~~~lv~~ir~~--Gmk~G~alkPgT~Ve~~~ 129 (224)
T KOG3111|consen 75 NPEQWVDQMAKAGASLFTFHYE-----------AT------Q-----K-PAELVEKIREK--GMKVGLALKPGTPVEDLE 129 (224)
T ss_pred CHHHHHHHHHhcCcceEEEEEe-----------ec------c-----C-HHHHHHHHHHc--CCeeeEEeCCCCcHHHHH
Confidence 7999999999999986654222 22 0 1 78999999999 9999996542 11
Q ss_pred -ccCc-cc--cCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 259 -WFNP-LY--VQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 259 -W~~p-~y--~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
|-.. +. -..-+..|-.|.|. +-+++.+++|=++|.---|=.||+-
T Consensus 130 ~~~~~~D~vLvMtVePGFGGQkFm-e~mm~KV~~lR~kyp~l~ievDGGv 178 (224)
T KOG3111|consen 130 PLAEHVDMVLVMTVEPGFGGQKFM-EDMMPKVEWLREKYPNLDIEVDGGV 178 (224)
T ss_pred HhhccccEEEEEEecCCCchhhhH-HHHHHHHHHHHHhCCCceEEecCCc
Confidence 1110 00 00112245567886 5678999999999943334479984
No 21
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=85.63 E-value=7 Score=41.62 Aligned_cols=111 Identities=17% Similarity=0.132 Sum_probs=67.2
Q ss_pred HHHHHHcCCcEEEEeeeccC-CCccCCCCCCCCccccCCCC-CCChHHHHHHHHHhhcCCceEEE---e-eCc-----cc
Q psy110 190 ADILASSGAKYVVLTSKHHE-GYTLWPSKYAFSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL---Y-HSL-----YE 258 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHD-GFaLWdSk~t~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl---Y-yS~-----~D 258 (358)
++-+|+.|...|-|+--+-- +-.-|-=..+ ++.+++..- ..|=+++|+++|+++ ||+|-+ | |.. .+
T Consensus 117 l~yl~~LGv~~i~L~Pi~~~~~~~~~GY~~~-~~~~~~~~~G~~~e~k~lV~~aH~~--Gi~VilD~V~NH~~~~~~~~~ 193 (542)
T TIGR02402 117 LPYLADLGITAIELMPVAQFPGTRGWGYDGV-LPYAPHNAYGGPDDLKALVDAAHGL--GLGVILDVVYNHFGPEGNYLP 193 (542)
T ss_pred hHHHHHcCCCEEEeCccccCCCCCCCCCCcc-CccccccccCCHHHHHHHHHHHHHC--CCEEEEEEccCCCCCcccccc
Confidence 68899999999988765421 1111211112 233333221 457799999999999 999977 3 221 22
Q ss_pred ccCccccCccCC------CCCc--hHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 259 WFNPLYVQDKAN------NFTT--NQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 259 W~~p~y~~d~~~------~~~~--~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
++.|.|..+... ++.. ..-+.+++...++-.+..|++|.+=||..
T Consensus 194 ~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~ 246 (542)
T TIGR02402 194 RYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAV 246 (542)
T ss_pred ccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCH
Confidence 344422211111 1211 12556777888888899999999999975
No 22
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=84.82 E-value=8.2 Score=38.74 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=70.8
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCC---ChHHHHHHHHHhhcCCceEEEeeCc-cc----
Q psy110 187 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKR---DLVGELATAIRRKYSDIHFGLYHSL-YE---- 258 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkR---DlV~Ela~A~Rk~~~GLk~GlYyS~-~D---- 258 (358)
++.++++++.|...+|+.-|--+|.-.|+|+... +...|..+ .=+++|++.|+++ ||.+-.-... -|
T Consensus 16 ~~~~~~i~~t~lNavVIDvKdd~G~i~y~s~~~~---~~~~ga~~~~i~D~~~l~~~l~e~--gIY~IARIv~FkD~~la 90 (316)
T PF13200_consen 16 DKLLDLIKRTELNAVVIDVKDDDGNITYDSQVPL---AREIGAVKPYIKDLKALVKKLKEH--GIYPIARIVVFKDPVLA 90 (316)
T ss_pred HHHHHHHHhcCCceEEEEEecCCceEEecCCCch---hhhcccccccccCHHHHHHHHHHC--CCEEEEEEEEecChHHh
Confidence 6889999999999999999999999999999872 12222222 3378999999999 9988774321 11
Q ss_pred ccCccccC----------ccC----CCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeC
Q psy110 259 WFNPLYVQ----------DKA----NNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDG 302 (358)
Q Consensus 259 W~~p~y~~----------d~~----~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg 302 (358)
-.+|+|.- ... ++|..+ +-+|..+-.+|+. +.|.|.|=||-
T Consensus 91 ~~~pe~av~~~~G~~w~d~~~~~WvnP~~~e--vw~Y~i~IA~Eaa-~~GFdEIqfDY 145 (316)
T PF13200_consen 91 EAHPEWAVKTKDGSVWRDNEGEAWVNPYSKE--VWDYNIDIAKEAA-KLGFDEIQFDY 145 (316)
T ss_pred hhChhhEEECCCCCcccCCCCCccCCCCCHH--HHHHHHHHHHHHH-HcCCCEEEeee
Confidence 11333321 111 122211 2245566666665 66888887874
No 23
>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised.
Probab=83.93 E-value=1.6 Score=42.10 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=56.1
Q ss_pred chhhhhcCCCCCCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceE
Q psy110 171 TYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHF 250 (358)
Q Consensus 171 ~Y~dfa~~Fnp~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~ 250 (358)
.|.|+.+ ...++|-++.++++++|+..+++=|-+-||-.|++-- ..+-+.+|++.||++ ||..
T Consensus 121 ~yAD~~r---~~~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~------------~~~~L~~Fv~~ar~~--gL~~ 183 (235)
T PF04476_consen 121 GYADAQR---VGSISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHL------------SEEELAEFVAQARAH--GLMC 183 (235)
T ss_pred Eecchhh---hcCCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcC------------CHHHHHHHHHHHHHc--cchh
Confidence 4555443 4568999999999999999999999999987776532 237789999999999 9999
Q ss_pred EEeeCc
Q psy110 251 GLYHSL 256 (358)
Q Consensus 251 GlYyS~ 256 (358)
|+==|+
T Consensus 184 aLAGSL 189 (235)
T PF04476_consen 184 ALAGSL 189 (235)
T ss_pred hccccC
Confidence 997665
No 24
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=83.70 E-value=2.6 Score=40.30 Aligned_cols=91 Identities=9% Similarity=0.146 Sum_probs=58.9
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCC-C--CccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcccccC
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA-F--SWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFN 261 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t-~--~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~ 261 (358)
+..+.++.+++.|.-.-++... .-|-.++. . .|+..+- -| .+++++.++++ |+|+.+...+.-
T Consensus 25 ~v~~~~~~~~~~~iP~d~~~lD-----~~~~~~~~~f~~~~d~~~F---pd-p~~~i~~l~~~--g~~~~~~~~P~v--- 90 (265)
T cd06589 25 KVLEVIDGMRENDIPLDGFVLD-----DDYTDGYGDFTFDWDAGKF---PN-PKSMIDELHDN--GVKLVLWIDPYI--- 90 (265)
T ss_pred HHHHHHHHHHHcCCCccEEEEC-----cccccCCceeeeecChhhC---CC-HHHHHHHHHHC--CCEEEEEeChhH---
Confidence 4566777777777765444432 11222222 1 2332222 14 57999999999 999999765422
Q ss_pred ccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCCC
Q psy110 262 PLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEA 306 (358)
Q Consensus 262 p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~~ 306 (358)
.+.+..++++++..++.|.+|+|.+...
T Consensus 91 -----------------~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 91 -----------------REWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred -----------------HHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 2455678888888899999999998644
No 25
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=83.44 E-value=5.4 Score=38.20 Aligned_cols=94 Identities=15% Similarity=0.303 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc---ccccC
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL---YEWFN 261 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~---~DW~~ 261 (358)
+|+.|++.|.+|||.++.+=++ .+ .-+.++.+..|+. |+|.|+-..+ .+-..
T Consensus 72 ~p~~~i~~fa~agad~It~H~E-----------~~------------~~~~r~i~~Ik~~--G~kaGv~lnP~Tp~~~i~ 126 (220)
T COG0036 72 NPDRYIEAFAKAGADIITFHAE-----------AT------------EHIHRTIQLIKEL--GVKAGLVLNPATPLEALE 126 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEEec-----------cC------------cCHHHHHHHHHHc--CCeEEEEECCCCCHHHHH
Confidence 7999999999999999987544 11 1245788999999 9999998764 22111
Q ss_pred cc-----c--cCccCCCCCchHHhhhhhHHHHH---HHHhcCCCCEEEEeCCC
Q psy110 262 PL-----Y--VQDKANNFTTNQFVTMKTLPELI---EIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 262 p~-----y--~~d~~~~~~~~~y~~~~~~~Ql~---ELi~rY~PDilWfDg~w 304 (358)
+. . ...-...|.+|.|. .-+++.++ +++.+-+.-.|+.||+-
T Consensus 127 ~~l~~vD~VllMsVnPGfgGQ~Fi-~~~l~Ki~~lr~~~~~~~~~~IeVDGGI 178 (220)
T COG0036 127 PVLDDVDLVLLMSVNPGFGGQKFI-PEVLEKIRELRAMIDERLDILIEVDGGI 178 (220)
T ss_pred HHHhhCCEEEEEeECCCCcccccC-HHHHHHHHHHHHHhcccCCeEEEEeCCc
Confidence 10 0 00111234456664 34455544 44553224459999984
No 26
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=81.94 E-value=9.4 Score=37.15 Aligned_cols=108 Identities=14% Similarity=0.184 Sum_probs=63.1
Q ss_pred HHHHHHHHHHcCCcE--EEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcc-cccCc
Q psy110 186 ANHWADILASSGAKY--VVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLY-EWFNP 262 (358)
Q Consensus 186 pdeWa~lak~AGAKY--vVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~-DW~~p 262 (358)
-.+.|+.+++.|.-. +++=..+.+++-. ....||..+-+ | .++|++.+++. |+|+++...+. .=..+
T Consensus 26 v~~~~~~~~~~~iP~d~~~lD~~w~~~~~~----~~f~~d~~~FP---d-~~~~i~~l~~~--G~~~~~~~~P~i~~~~~ 95 (308)
T cd06593 26 VNEFADGMRERNLPCDVIHLDCFWMKEFQW----CDFEFDPDRFP---D-PEGMLSRLKEK--GFKVCLWINPYIAQKSP 95 (308)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccCCcc----eeeEECcccCC---C-HHHHHHHHHHC--CCeEEEEecCCCCCCch
Confidence 467888889999655 4444456655321 11234433222 4 47999999999 99999976531 10011
Q ss_pred cccC---------ccC---------------CCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCC
Q psy110 263 LYVQ---------DKA---------------NNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWE 305 (358)
Q Consensus 263 ~y~~---------d~~---------------~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~ 305 (358)
.|.. +.. -+++..+- .+++..++++|++ ++.|.+|+|.+-.
T Consensus 96 ~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a-~~w~~~~~~~~~~-~Gid~~~~D~~e~ 160 (308)
T cd06593 96 LFKEAAEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDA-CKWYKDKLKPLLD-MGVDCFKTDFGER 160 (308)
T ss_pred hHHHHHHCCeEEECCCCCeeeecccCCCcccccCCCHHH-HHHHHHHHHHHHH-hCCcEEecCCCCC
Confidence 1110 000 11222222 3567788888876 8999999998743
No 27
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=79.80 E-value=18 Score=39.19 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=66.8
Q ss_pred HHHHHHHHHcCCcEEEEeee--ccCCCccCCCCCCCCccccCCCC-CCChHHHHHHHHHhhcCCceEEE---e-eCcccc
Q psy110 187 NHWADILASSGAKYVVLTSK--HHEGYTLWPSKYAFSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL---Y-HSLYEW 259 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaK--HHDGFaLWdSk~t~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl---Y-yS~~DW 259 (358)
++.++-+|+.|...|-|+-- |-. -..|-=..+ +|.+++..- ..+=+++|+++|+++ ||+|.+ | |...+.
T Consensus 160 ~~l~dyl~~LGvt~i~L~Pi~e~~~-~~~wGY~~~-~y~~~~~~~Gt~~dlk~lV~~~H~~--Gi~VilD~V~NH~~~~~ 235 (613)
T TIGR01515 160 DQLIPYVKELGFTHIELLPVAEHPF-DGSWGYQVT-GYYAPTSRFGTPDDFMYFVDACHQA--GIGVILDWVPGHFPKDD 235 (613)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCC-CCCCCCCcc-cCcccccccCCHHHHHHHHHHHHHC--CCEEEEEecccCcCCcc
Confidence 44567889999999988653 311 112322223 333333221 346699999999999 999987 3 222221
Q ss_pred -----cC--ccccC-c----cCCCCC------chHHhhhhhHHHHHHHHhcCCCCEEEEeC
Q psy110 260 -----FN--PLYVQ-D----KANNFT------TNQFVTMKTLPELIEIVQKYQPEVIWSDG 302 (358)
Q Consensus 260 -----~~--p~y~~-d----~~~~~~------~~~y~~~~~~~Ql~ELi~rY~PDilWfDg 302 (358)
+. +.|.. + ....+. ...-+.+++..-++-.+++|++|.+=||.
T Consensus 236 ~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~ 296 (613)
T TIGR01515 236 HGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDA 296 (613)
T ss_pred chhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcC
Confidence 11 11210 0 000111 23446678888899999999999999996
No 28
>PRK14057 epimerase; Provisional
Probab=79.04 E-value=9.1 Score=37.35 Aligned_cols=94 Identities=12% Similarity=0.119 Sum_probs=58.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCc---------eEEEeeC
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDI---------HFGLYHS 255 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GL---------k~GlYyS 255 (358)
||+.|++.+.++||.++.+=++ .+ .+ +.+..+.+|++ |+ +.|+=..
T Consensus 86 ~P~~~i~~~~~aGad~It~H~E-----------a~-----------~~-~~~~l~~Ir~~--G~k~~~~~~~~kaGlAln 140 (254)
T PRK14057 86 DQWTAAQACVKAGAHCITLQAE-----------GD-----------IH-LHHTLSWLGQQ--TVPVIGGEMPVIRGISLC 140 (254)
T ss_pred CHHHHHHHHHHhCCCEEEEeec-----------cc-----------cC-HHHHHHHHHHc--CCCcccccccceeEEEEC
Confidence 7999999999999999887554 11 01 35677889999 86 6999765
Q ss_pred c---ccccCcccc-Cc------cCCCCCchHHhhhhhHH---HHHHHHhcCCCCE-EEEeCCC
Q psy110 256 L---YEWFNPLYV-QD------KANNFTTNQFVTMKTLP---ELIEIVQKYQPEV-IWSDGEW 304 (358)
Q Consensus 256 ~---~DW~~p~y~-~d------~~~~~~~~~y~~~~~~~---Ql~ELi~rY~PDi-lWfDg~w 304 (358)
+ .+...+... -| -...|.++.|. +.+++ ++++++.+.+.++ |+.||+-
T Consensus 141 P~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi-~~~l~KI~~lr~~~~~~~~~~~IeVDGGI 202 (254)
T PRK14057 141 PATPLDVIIPILSDVEVIQLLAVNPGYGSKMRS-SDLHERVAQLLCLLGDKREGKIIVIDGSL 202 (254)
T ss_pred CCCCHHHHHHHHHhCCEEEEEEECCCCCchhcc-HHHHHHHHHHHHHHHhcCCCceEEEECCC
Confidence 4 222111100 00 11234455664 23343 5556777777765 8999984
No 29
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=77.85 E-value=15 Score=36.31 Aligned_cols=96 Identities=13% Similarity=0.104 Sum_probs=54.8
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceE-----E
Q psy110 178 DFTAEFF-DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHF-----G 251 (358)
Q Consensus 178 ~Fnp~~F-DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~-----G 251 (358)
.|++++| ||++.++.+++.|.|.++.+.-+- . . .. ++.+++++. |.-+ |
T Consensus 63 ~wd~~~FPdp~~mi~~L~~~G~k~~~~v~P~v----------~-----~----~~----~~y~e~~~~--g~l~~~~~~~ 117 (317)
T cd06598 63 DWDRKAFPDPAGMIADLAKKGVKTIVITEPFV----------L-----K----NS----KNWGEAVKA--GALLKKDQGG 117 (317)
T ss_pred EeccccCCCHHHHHHHHHHcCCcEEEEEcCcc----------c-----C----Cc----hhHHHHHhC--CCEEEECCCC
Confidence 3456665 899999999999999999863211 1 0 11 234566667 5421 1
Q ss_pred EeeCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 252 LYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 252 lYyS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
.-+. .+|... ....-+++..+ ..+++..+++++ .+++.|.+|+|.+-
T Consensus 118 ~~~~-~~~w~g---~~~~~Dftnp~-a~~w~~~~~~~~-~~~Gvdg~w~D~~E 164 (317)
T cd06598 118 VPTL-FDFWFG---NTGLIDWFDPA-AQAWFHDNYKKL-IDQGVTGWWGDLGE 164 (317)
T ss_pred CEee-eeccCC---CccccCCCCHH-HHHHHHHHHHHh-hhCCccEEEecCCC
Confidence 1111 111110 00111233323 235667788887 66899999999974
No 30
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=76.52 E-value=12 Score=37.31 Aligned_cols=96 Identities=14% Similarity=0.120 Sum_probs=52.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEE----E-eeCcccc
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFG----L-YHSLYEW 259 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~G----l-YyS~~DW 259 (358)
||++.++.+++.|.|.++.+.=+-+ .... . .+.... + .+.+.++ |+-+- - |....-|
T Consensus 86 dp~~mi~~Lh~~G~kv~l~v~P~i~------~~~~-----~-~~~~~~---~-~~~~~~~--g~~vk~~~G~~~~~~~~W 147 (340)
T cd06597 86 NPKGMIDELHEQGVKVLLWQIPIIK------LRPH-----P-HGQADN---D-EDYAVAQ--NYLVQRGVGKPYRIPGQW 147 (340)
T ss_pred CHHHHHHHHHHCCCEEEEEecCccc------cccc-----c-ccccch---h-HHHHHHC--CEEEEcCCCCcccccccc
Confidence 8999999999999999886654433 0000 0 010111 1 1334455 43221 0 1111112
Q ss_pred cCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 260 FNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 260 ~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
.... .--+++..+- .+++..+++++++++++|.+|+|++
T Consensus 148 ~g~~----~~~Dftnp~a-~~Ww~~~~~~~~~~~Gidg~w~D~~ 186 (340)
T cd06597 148 FPDS----LMLDFTNPEA-AQWWMEKRRYLVDELGIDGFKTDGG 186 (340)
T ss_pred CCCc----eeecCCCHHH-HHHHHHHHHHHHHhcCCcEEEecCC
Confidence 1100 0112333232 3567789999999999999999987
No 31
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=74.77 E-value=6.8 Score=39.28 Aligned_cols=23 Identities=13% Similarity=0.071 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 280 MKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 280 ~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
+++..+++.|.+ .++|.+|.|+.
T Consensus 110 ~wW~~~~~~l~~-~Gv~~~W~Dmn 132 (332)
T cd06601 110 EWWGNQYKYLFD-IGLEFVWQDMT 132 (332)
T ss_pred HHHHHHHHHHHh-CCCceeecCCC
Confidence 344555565554 68999999975
No 32
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=74.67 E-value=20 Score=35.33 Aligned_cols=109 Identities=9% Similarity=0.039 Sum_probs=61.4
Q ss_pred CHHHHHHHHHHcCCcEEEEeee--ccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcc-cccC
Q psy110 185 DANHWADILASSGAKYVVLTSK--HHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLY-EWFN 261 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaK--HHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~-DW~~ 261 (358)
+..+.++.+++.|.-.=++..- |.++.. | . ...|+..+-. | .++|++.++++ |+|+.+...+. .=..
T Consensus 25 ev~~~~~~~~~~~iP~d~i~lD~~~~~~~~-~-~--~f~~d~~~FP---d-p~~mi~~L~~~--G~kv~~~i~P~v~~~~ 94 (319)
T cd06591 25 ELLDVAKEYRKRGIPLDVIVQDWFYWPKQG-W-G--EWKFDPERFP---D-PKAMVRELHEM--NAELMISIWPTFGPET 94 (319)
T ss_pred HHHHHHHHHHHhCCCccEEEEechhhcCCC-c-e--eEEEChhhCC---C-HHHHHHHHHHC--CCEEEEEecCCcCCCC
Confidence 3467777777877766665443 222211 1 0 2234432221 4 47999999999 99999865431 1011
Q ss_pred cccc---------Ccc--------------CCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 262 PLYV---------QDK--------------ANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 262 p~y~---------~d~--------------~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
+.|. .+. .-+++..+- .+.+..++++.+.+++.|.+|+|++-
T Consensus 95 ~~y~e~~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a-~~w~~~~~~~~~~~~Gvdg~w~D~~E 159 (319)
T cd06591 95 ENYKEMDEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEA-REYYWKQLKKNYYDKGVDAWWLDAAE 159 (319)
T ss_pred hhHHHHHHCCEEEEcCCCCeeeeeCCCCccccCCCCHHH-HHHHHHHHHHHhhcCCCcEEEecCCC
Confidence 1110 000 012333332 34566788887888999999999973
No 33
>PRK05402 glycogen branching enzyme; Provisional
Probab=74.64 E-value=28 Score=38.47 Aligned_cols=111 Identities=15% Similarity=0.141 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCcEEEEeee--ccCCCccCCCCCCCCccccCCCC-CCChHHHHHHHHHhhcCCceEEE---e-eCcccc
Q psy110 187 NHWADILASSGAKYVVLTSK--HHEGYTLWPSKYAFSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL---Y-HSLYEW 259 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaK--HHDGFaLWdSk~t~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl---Y-yS~~DW 259 (358)
+++++-+|+.|...|-|+-= |-.+ .-|--..+ +|.+++..- ..+=+++|+++|+++ ||+|.+ + |+..+.
T Consensus 269 ~~l~~ylk~LGv~~i~L~Pi~e~~~~-~~~GY~~~-~y~ai~~~~Gt~~dfk~lV~~~H~~--Gi~VilD~V~NH~~~~~ 344 (726)
T PRK05402 269 DQLIPYVKEMGFTHVELLPIAEHPFD-GSWGYQPT-GYYAPTSRFGTPDDFRYFVDACHQA--GIGVILDWVPAHFPKDA 344 (726)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCC-CCCCCCcc-cCCCcCcccCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCc
Confidence 45567889999999877764 3211 12322233 444443222 356799999999999 999987 3 222221
Q ss_pred -----cC--ccccC-c----cCC-------CCCchHHhhhhhHHHHHHHHhcCCCCEEEEeC
Q psy110 260 -----FN--PLYVQ-D----KAN-------NFTTNQFVTMKTLPELIEIVQKYQPEVIWSDG 302 (358)
Q Consensus 260 -----~~--p~y~~-d----~~~-------~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg 302 (358)
+. +.|.. + ... ++. ..-+.+++..-++-.+++|++|.+=||.
T Consensus 345 ~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~-~~~v~~~l~~~~~~W~~e~~iDG~R~D~ 405 (726)
T PRK05402 345 HGLARFDGTALYEHADPREGEHPDWGTLIFNYG-RNEVRNFLVANALYWLEEFHIDGLRVDA 405 (726)
T ss_pred cchhccCCCcceeccCCcCCccCCCCCccccCC-CHHHHHHHHHHHHHHHHHhCCcEEEECC
Confidence 11 11110 0 000 111 2234567778888888999999999995
No 34
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=74.60 E-value=6.2 Score=36.00 Aligned_cols=50 Identities=18% Similarity=0.378 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEee
Q psy110 184 FDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYH 254 (358)
Q Consensus 184 FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYy 254 (358)
.+.+.| +.+|++|++++++=+- +|- .+. + .-..+-.+.||+. ||++|+||
T Consensus 13 i~~~dw-~~vk~~Gi~faiikat--eG~-----~~~------D-----~~~~~n~~~A~~a--Gl~vG~Yh 62 (192)
T cd06522 13 MSVADY-NKLKNYGVKAVIVKLT--EGT-----TYR------N-----PYAASQIANAKAA--GLKVSAYH 62 (192)
T ss_pred ccHHHH-HHHHHcCCCEEEEEEc--CCC-----Ccc------C-----hHHHHHHHHHHHC--CCeeEEEE
Confidence 455678 6678899999999884 221 111 1 2246778999999 99999996
No 35
>PRK12313 glycogen branching enzyme; Provisional
Probab=74.59 E-value=24 Score=38.14 Aligned_cols=113 Identities=15% Similarity=0.160 Sum_probs=66.9
Q ss_pred HHHHHHHHHcCCcEEEEeee--ccCCCccCCCCCCCCccccCCCC-CCChHHHHHHHHHhhcCCceEEE---e-eCccc-
Q psy110 187 NHWADILASSGAKYVVLTSK--HHEGYTLWPSKYAFSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL---Y-HSLYE- 258 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaK--HHDGFaLWdSk~t~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl---Y-yS~~D- 258 (358)
++.++-+|+.|+..|-|+-= |-.+ .-|--..+ ++.+++..- ..+=+++|+++|+++ ||+|-+ + |+..+
T Consensus 174 ~~ll~yl~~LGv~~i~L~Pi~~~~~~-~~~GY~~~-~y~~i~~~~Gt~~d~k~lv~~~H~~--Gi~VilD~V~nH~~~~~ 249 (633)
T PRK12313 174 DELIPYVKEMGYTHVEFMPLMEHPLD-GSWGYQLT-GYFAPTSRYGTPEDFMYLVDALHQN--GIGVILDWVPGHFPKDD 249 (633)
T ss_pred HHHHHHHHHcCCCEEEeCchhcCCCC-CCCCCCCc-CcCcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEECCCCCCCCc
Confidence 45568899999999976653 3211 12322233 444444222 357799999999999 999987 3 22111
Q ss_pred ----ccCc--ccc-Ccc----CCCC-----C-chHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 259 ----WFNP--LYV-QDK----ANNF-----T-TNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 259 ----W~~p--~y~-~d~----~~~~-----~-~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
++.. .|. .+. ...+ . ..+-+.+++..-++-.+++|++|.+=||..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~ 311 (633)
T PRK12313 250 DGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAV 311 (633)
T ss_pred ccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCh
Confidence 1211 111 010 0011 1 123456777888888889999999999943
No 36
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=73.18 E-value=40 Score=33.28 Aligned_cols=99 Identities=12% Similarity=0.023 Sum_probs=55.8
Q ss_pred HHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcccccCccccCcc
Q psy110 189 WADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDK 268 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~ 268 (358)
..+.++++|.|.+++-==+-++ ..+..|..........-+..-+++||++ |+|+.+.+..+. ...+...
T Consensus 17 l~~~~~~~g~~~v~lAFi~~~~------~~~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~--g~~~~~~- 85 (294)
T cd06543 17 LTTYAAATGVKAFTLAFIVASG------GCKPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGAS--GTPLATS- 85 (294)
T ss_pred HHHHHHHcCCCEEEEEEEEcCC------CCcccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCC--CCccccC-
Confidence 4477889999999875222221 2222333211111123345667799999 999998766432 2211110
Q ss_pred CCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCC
Q psy110 269 ANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWE 305 (358)
Q Consensus 269 ~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~ 305 (358)
... .+-+...+.++|++|+.|.|=||....
T Consensus 86 ---~~~----~~~~~~a~~~~i~~y~~dgiDfDiE~~ 115 (294)
T cd06543 86 ---CTS----ADQLAAAYQKVIDAYGLTHLDFDIEGG 115 (294)
T ss_pred ---ccc----HHHHHHHHHHHHHHhCCCeEEEeccCC
Confidence 111 122345667899999999887776543
No 37
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=72.29 E-value=29 Score=34.23 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=62.9
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccC-CCCC-CCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc-ccccCc
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLW-PSKY-AFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL-YEWFNP 262 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLW-dSk~-t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~-~DW~~p 262 (358)
..+.|+.+++.|.-.-++.-. +|+.-. ..+. ...|+...- | | .++|++..+++ |+|+.++..+ +.-..+
T Consensus 31 v~~~~~~~r~~~iP~d~i~ld--~~~~~~~~~~~~~f~~d~~~F-P--d-p~~mi~~L~~~--g~k~~~~i~P~i~~~~~ 102 (317)
T cd06599 31 LLEFIDKCREHDIPCDSFHLS--SGYTSIEGGKRYVFNWNKDRF-P--D-PAAFVAKFHER--GIRLAPNIKPGLLQDHP 102 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEe--ccccccCCCceeeeecCcccC-C--C-HHHHHHHHHHC--CCEEEEEeCCcccCCCH
Confidence 467788888999887777542 122111 1111 123432221 1 3 56999999999 9999986543 111112
Q ss_pred cccC---------cc--C--------------CCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 263 LYVQ---------DK--A--------------NNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 263 ~y~~---------d~--~--------------~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
.|.. +. . -+++..+- .+++..++++.+...+.|.+|+|++
T Consensus 103 ~y~e~~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a-~~ww~~~~~~~~~~~Gvdg~w~D~~ 167 (317)
T cd06599 103 RYKELKEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEG-REWWKEGVKEALLDLGIDSTWNDNN 167 (317)
T ss_pred HHHHHHHCCcEEEcCCCCCcceecccCCCeEeecCCChHH-HHHHHHHHHHHHhcCCCcEEEecCC
Confidence 2210 00 0 12222222 3566788888888899999999987
No 38
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=71.72 E-value=74 Score=37.30 Aligned_cols=113 Identities=18% Similarity=0.267 Sum_probs=64.9
Q ss_pred HHHHHHcCCcEEEEeeecc----C---------CCccCCCCCCC-----CccccCC----CCC-----CChHHHHHHHHH
Q psy110 190 ADILASSGAKYVVLTSKHH----E---------GYTLWPSKYAF-----SWNSMDI----GPK-----RDLVGELATAIR 242 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHH----D---------GFaLWdSk~t~-----~~ns~~~----gpk-----RDlV~Ela~A~R 242 (358)
++-+|++|...|-|+--+- + .++--.+.++. +|.+... .|. ..=+++|+++|+
T Consensus 486 LdYLkeLGVT~I~LmPv~d~~~~~e~~~~~~~~~~~~~~~~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH 565 (1111)
T TIGR02102 486 LDYLQDLGVTHIQLLPVLSYFFVNEFKNKERMLDYASSNTNYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIH 565 (1111)
T ss_pred HHHHHHcCCCEEEEcCccccccccccccccccccccccccccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHH
Confidence 6889999999997776542 1 11100111211 2333321 111 145899999999
Q ss_pred hhcCCceEEE---e-eCc----ccccCcccc--Ccc---------CCCCC-chHHhhhhhHHHHHHHHhcCCCCEEEEeC
Q psy110 243 RKYSDIHFGL---Y-HSL----YEWFNPLYV--QDK---------ANNFT-TNQFVTMKTLPELIEIVQKYQPEVIWSDG 302 (358)
Q Consensus 243 k~~~GLk~Gl---Y-yS~----~DW~~p~y~--~d~---------~~~~~-~~~y~~~~~~~Ql~ELi~rY~PDilWfDg 302 (358)
++ ||+|.+ | |.. ++-..|.|. .+. .+... ....+.+++..-++-.++.|++|.+=||-
T Consensus 566 ~~--GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl 643 (1111)
T TIGR02102 566 KR--GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDM 643 (1111)
T ss_pred HC--CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 99 999977 4 211 111122221 000 01111 23455678888888899999999999996
Q ss_pred CC
Q psy110 303 EW 304 (358)
Q Consensus 303 ~w 304 (358)
..
T Consensus 644 ~g 645 (1111)
T TIGR02102 644 MG 645 (1111)
T ss_pred cc
Confidence 53
No 39
>PLN02960 alpha-amylase
Probab=70.76 E-value=29 Score=39.49 Aligned_cols=113 Identities=14% Similarity=0.102 Sum_probs=71.0
Q ss_pred HHHHHHHHHcCCcEEEEeeec-cCCCccCCCCCCCCccccCCCC-CCChHHHHHHHHHhhcCCceEEE---e-eCccc--
Q psy110 187 NHWADILASSGAKYVVLTSKH-HEGYTLWPSKYAFSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL---Y-HSLYE-- 258 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKH-HDGFaLWdSk~t~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl---Y-yS~~D-- 258 (358)
++.++-+|+.|...|-|+--. |.++.-|-=..+ +|.++...- ..|=+++|+++|+++ ||+|-+ | |...|
T Consensus 420 e~~LdYLk~LGvt~IeLmPv~e~~~~~swGY~~~-~yfa~~~~yGtp~dfk~LVd~aH~~--GI~VILDvV~NH~~~d~~ 496 (897)
T PLN02960 420 QKVLPHVKKAGYNAIQLIGVQEHKDYSSVGYKVT-NFFAVSSRFGTPDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEM 496 (897)
T ss_pred HHHHHHHHHcCCCEEEECCcccCCCCCCCCCCcc-cCCCcccccCCHHHHHHHHHHHHHC--CCEEEEEecccccCCccc
Confidence 357888999999999988654 234444544444 555554322 347799999999999 999987 2 22222
Q ss_pred ----ccCc---cccC-cc---CC-------CCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 259 ----WFNP---LYVQ-DK---AN-------NFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 259 ----W~~p---~y~~-d~---~~-------~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
++.. .|.. +. .. +| ...-+.++++.-++=.++.|++|.+=||..
T Consensus 497 ~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy-~~~eVr~fLlsna~yWl~EyhIDGfR~DAV 558 (897)
T PLN02960 497 VGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKY-GDHEVLHFLLSNLNWWVTEYRVDGFQFHSL 558 (897)
T ss_pred cchhhcCCCccceeecCCCCccCCCCCcccCC-CCHHHHHHHHHHHHHHHHHHCCCceeeccc
Confidence 1111 1111 00 00 12 123456788888888899999998888853
No 40
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=70.59 E-value=24 Score=35.01 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.0
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCcEEEEe
Q psy110 178 DFTAEFF-DANHWADILASSGAKYVVLT 204 (358)
Q Consensus 178 ~Fnp~~F-DpdeWa~lak~AGAKYvVlT 204 (358)
.|++++| ||++.++.+++.|.|.++.+
T Consensus 57 ~~d~~~FPdp~~mi~~L~~~G~k~~~~~ 84 (339)
T cd06603 57 TWDKKKFPDPEKMQEKLASKGRKLVTIV 84 (339)
T ss_pred EeCcccCCCHHHHHHHHHHCCCEEEEEe
Confidence 5678888 99999999999999976654
No 41
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=70.29 E-value=9.6 Score=36.15 Aligned_cols=55 Identities=13% Similarity=0.135 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 180 TAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 180 np~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
||-..+|++|++.++++|+..+++-.-+. .+ -+-+.++.+.||++ ||+.|+-.++
T Consensus 84 n~~~~~~~~~i~~~~~~Gadgvii~dlp~--------------e~------~~~~~~~~~~~~~~--Gl~~~~~v~p 138 (244)
T PRK13125 84 EDYVDSLDNFLNMARDVGADGVLFPDLLI--------------DY------PDDLEKYVEIIKNK--GLKPVFFTSP 138 (244)
T ss_pred chhhhCHHHHHHHHHHcCCCEEEECCCCC--------------Cc------HHHHHHHHHHHHHc--CCCEEEEECC
Confidence 55456999999999999999999821111 00 02367899999999 9999998775
No 42
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=69.28 E-value=55 Score=32.68 Aligned_cols=107 Identities=11% Similarity=0.108 Sum_probs=62.8
Q ss_pred HHHHHHHHHHcCCcEEEEee--eccCCCccCCCCCCCCccccCCCCCCCh-HHHHHHHHHhhcCCceEEEeeCccc--c-
Q psy110 186 ANHWADILASSGAKYVVLTS--KHHEGYTLWPSKYAFSWNSMDIGPKRDL-VGELATAIRRKYSDIHFGLYHSLYE--W- 259 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTa--KHHDGFaLWdSk~t~~~ns~~~gpkRDl-V~Ela~A~Rk~~~GLk~GlYyS~~D--W- 259 (358)
..+.++.+++.|...-++.. .++++++ ...|+...-. |. .++|++.++++ |+|+.++..+.- .
T Consensus 26 v~~~~~~~r~~~iP~d~i~lD~~~~~~~~------~f~~d~~~FP---dp~~~~mi~~L~~~--G~k~~~~i~P~v~~~~ 94 (339)
T cd06602 26 VKEVVENMRAAGIPLDVQWNDIDYMDRRR------DFTLDPVRFP---GLKMPEFVDELHAN--GQHYVPILDPAISANE 94 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECcccccCcc------ceecccccCC---CccHHHHHHHHHHC--CCEEEEEEeCccccCc
Confidence 45777777888877666554 3333322 2234432211 32 38999999999 999999764321 1
Q ss_pred ---cCccccC---------cc------------C---CCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 260 ---FNPLYVQ---------DK------------A---NNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 260 ---~~p~y~~---------d~------------~---~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
..+.|.. +. . -+++..+- .+.+..++++++++++.|.+|+|++-
T Consensus 95 ~~~~~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a-~~ww~~~~~~~~~~~Gvdg~w~D~~E 165 (339)
T cd06602 95 PTGSYPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNT-QEWWTDEIKDFHDQVPFDGLWIDMNE 165 (339)
T ss_pred CCCCCHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHH-HHHHHHHHHHHHhcCCCcEEEecCCC
Confidence 0111110 00 0 12222222 35667899999999999999999873
No 43
>PRK02227 hypothetical protein; Provisional
Probab=69.28 E-value=5 Score=38.80 Aligned_cols=61 Identities=18% Similarity=0.219 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 182 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 182 ~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
..-+|.++.++++++|+..+++=|---||-.|++=- .-+-+++|++.||++ ||..|+==|+
T Consensus 129 ~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l------------~~~~L~~Fv~~ar~~--Gl~~gLAGSL 189 (238)
T PRK02227 129 GSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHM------------DEEELAEFVAEARSH--GLMSALAGSL 189 (238)
T ss_pred cCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhC------------CHHHHHHHHHHHHHc--ccHhHhcccC
Confidence 345899999999999999999977777776665422 237799999999999 9999997665
No 44
>smart00642 Aamy Alpha-amylase domain.
Probab=69.10 E-value=13 Score=33.46 Aligned_cols=59 Identities=20% Similarity=0.219 Sum_probs=38.8
Q ss_pred HHHHHcCCcEEEEeeeccCCCc-cCCCCCC-CCccccC--CCCCCChHHHHHHHHHhhcCCceEEE
Q psy110 191 DILASSGAKYVVLTSKHHEGYT-LWPSKYA-FSWNSMD--IGPKRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 191 ~lak~AGAKYvVlTaKHHDGFa-LWdSk~t-~~~ns~~--~gpkRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
+-+++.|.+.|.|+--+..+.. .++..|. .++..++ .| ..+=+++|+++|+++ ||++.+
T Consensus 26 ~yl~~lG~~~I~l~Pi~~~~~~~~~~~gY~~~d~~~i~~~~G-t~~d~~~lv~~~h~~--Gi~vil 88 (166)
T smart00642 26 DYLKDLGVTAIWLSPIFESPQGYPSYHGYDISDYKQIDPRFG-TMEDFKELVDAAHAR--GIKVIL 88 (166)
T ss_pred HHHHHCCCCEEEECcceeCCCCCCCCCCcCccccCCCCcccC-CHHHHHHHHHHHHHC--CCEEEE
Confidence 4689999999998876543321 1222222 1333332 22 457799999999999 999987
No 45
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=68.79 E-value=29 Score=38.88 Aligned_cols=113 Identities=14% Similarity=0.110 Sum_probs=67.9
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCC-CccCCCCCCCCccccCCCC-CCChHHHHHHHHHhhcCCceEEE---e-eCccc--
Q psy110 187 NHWADILASSGAKYVVLTSKHHEG-YTLWPSKYAFSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL---Y-HSLYE-- 258 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDG-FaLWdSk~t~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl---Y-yS~~D-- 258 (358)
++-++-+|+.|...|-|+.-+--. ..-|--..+ ++.++...- ..|=+++|+++|+++ ||+|-+ + |...+
T Consensus 254 ~~~L~ylk~LG~t~I~LmPi~e~~~~~~wGY~~~-~~fa~~~~~Gtp~dlk~LVd~aH~~--GI~VilDvV~nH~~~~~~ 330 (758)
T PLN02447 254 DDVLPRIKALGYNAVQLMAIQEHAYYGSFGYHVT-NFFAVSSRSGTPEDLKYLIDKAHSL--GLRVLMDVVHSHASKNTL 330 (758)
T ss_pred HHHHHHHHHcCCCEEEECCccccCCCCCCCcCcc-cCcccccccCCHHHHHHHHHHHHHC--CCEEEEEecccccccccc
Confidence 566788999999999988654321 122332333 444443221 346799999999999 999987 2 11110
Q ss_pred ----cc---CccccC-cc----------CCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 259 ----WF---NPLYVQ-DK----------ANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 259 ----W~---~p~y~~-d~----------~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
.+ ++.|.. +. .-++. ..-+.++++..++-.+++|++|.+=||+.
T Consensus 331 ~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~-~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV 392 (758)
T PLN02447 331 DGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYG-NWEVLRFLLSNLRWWLEEYKFDGFRFDGV 392 (758)
T ss_pred ccccccCCCCccccccCCCCCcCcCCCceecCC-CHHHHHHHHHHHHHHHHHhCcccccccch
Confidence 01 111111 00 00111 12345788888888899999999989864
No 46
>cd06523 GH25_PlyB-like PlyB is a bacteriophage endolysin that displays potent lytic activity toward Bacillus anthracis. PlyB has an N-terminal glycosyl hydrolase family 25 (GH25) catalytic domain and a C-terminal bacterial SH3-like domain, SH3b. Both domains are required for effective catalytic activity. Endolysins are produced by bacteriophages at the end of their life cycle and participate in lysing the bacterial cell in order to release the newly formed progeny. Endolysins (also referred to as endo-N-acetylmuramidases or peptidoglycan hydrolases) degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=68.43 E-value=7.4 Score=35.12 Aligned_cols=46 Identities=22% Similarity=0.393 Sum_probs=32.0
Q ss_pred HHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEee
Q psy110 189 WADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYH 254 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYy 254 (358)
|....+++|++++++-+-. |-. +. + --...-.++||+. ||++|+||
T Consensus 14 ~~~~~~~~g~~fviikate--G~~-----~~------D-----~~f~~n~~~a~~a--Gl~vG~Yh 59 (177)
T cd06523 14 WDYDTLSKQLDLVIIRVQY--GSN-----YV------D-----LKYKNNIKEFKKR--GIPFGVYA 59 (177)
T ss_pred HHHHHHhCCCCEEEEEEeC--CCc-----cc------C-----HHHHHHHHHHHHc--CCCeEEEE
Confidence 5223567999999999864 211 11 0 1245778999999 99999995
No 47
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=68.09 E-value=28 Score=32.89 Aligned_cols=96 Identities=24% Similarity=0.347 Sum_probs=57.8
Q ss_pred CCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc---cccc
Q psy110 184 FDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL---YEWF 260 (358)
Q Consensus 184 FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~---~DW~ 260 (358)
-+|+.+++.+.++||.++.+-+. + ..+-+.+..+++|+. |+++|+=..+ .+-.
T Consensus 75 ~~p~~~i~~~~~~Gad~itvH~e------------a----------~~~~~~~~l~~ik~~--G~~~gval~p~t~~e~l 130 (228)
T PTZ00170 75 SNPEKWVDDFAKAGASQFTFHIE------------A----------TEDDPKAVARKIREA--GMKVGVAIKPKTPVEVL 130 (228)
T ss_pred CCHHHHHHHHHHcCCCEEEEecc------------C----------CchHHHHHHHHHHHC--CCeEEEEECCCCCHHHH
Confidence 47999999999999999877222 1 123367899999999 9999996543 1111
Q ss_pred Cccc--c-Cc------cCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 261 NPLY--V-QD------KANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 261 ~p~y--~-~d------~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
.+.. . .| ....+..+.+. ......++++-..++...|+.|||-
T Consensus 131 ~~~l~~~~vD~Vl~m~v~pG~~gq~~~-~~~~~ki~~~~~~~~~~~I~VdGGI 182 (228)
T PTZ00170 131 FPLIDTDLVDMVLVMTVEPGFGGQSFM-HDMMPKVRELRKRYPHLNIQVDGGI 182 (228)
T ss_pred HHHHccchhhhHHhhhcccCCCCcEec-HHHHHHHHHHHHhcccCeEEECCCC
Confidence 1111 0 00 11123334442 3345566666554444559999984
No 48
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=67.47 E-value=6.6 Score=35.74 Aligned_cols=49 Identities=8% Similarity=0.109 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 187 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
..|-. +|++|.+++++-+.- |-..-| --..+-.+.||++ ||++|+||-.
T Consensus 13 i~w~~-vk~~g~~fv~ikate--g~~~~D----------------~~f~~n~~~A~~a--Gl~~G~Yhf~ 61 (196)
T cd06416 13 STFQC-LKNNGYSFAIIRAYR--SNGSFD----------------PNSVTNIKNARAA--GLSTDVYFFP 61 (196)
T ss_pred hhhhH-HHhCCceEEEEEEEc--cCCccC----------------hHHHHHHHHHHHc--CCccceEEEe
Confidence 34544 467899999998742 221111 1245677899999 9999999643
No 49
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=67.27 E-value=88 Score=33.78 Aligned_cols=114 Identities=17% Similarity=0.191 Sum_probs=65.1
Q ss_pred HHHHHHHHcCCcEEEEeeeccCC-------Ccc--CCCCCCCCccccC----CCCC-----CChHHHHHHHHHhhcCCce
Q psy110 188 HWADILASSGAKYVVLTSKHHEG-------YTL--WPSKYAFSWNSMD----IGPK-----RDLVGELATAIRRKYSDIH 249 (358)
Q Consensus 188 eWa~lak~AGAKYvVlTaKHHDG-------FaL--WdSk~t~~~ns~~----~gpk-----RDlV~Ela~A~Rk~~~GLk 249 (358)
+-++-+|+.|...|-|+-=+--. -.- |-=..+ ++.+++ ..|. .+-+++|+++|+++ ||+
T Consensus 168 ~~LdyL~~LGvt~I~L~Pi~~~~~~~~~~~~~~~~wGY~~~-~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~--Gi~ 244 (605)
T TIGR02104 168 TGLDYLKELGVTHVQLLPVFDFAGVDEEDPNNAYNWGYDPL-NYNVPEGSYSTNPYDPATRIRELKQMIQALHEN--GIR 244 (605)
T ss_pred hHHHHHHHcCCCEEEeCCcccccccccccCCCCCCCCCCCc-cCCCcChhhhcCCCccchHHHHHHHHHHHHHHC--CCE
Confidence 45788899999998776544210 000 211112 333222 1111 26799999999999 999
Q ss_pred EEE---e-eCcc---ccc---CccccC--ccC----------CCCC-chHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 250 FGL---Y-HSLY---EWF---NPLYVQ--DKA----------NNFT-TNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 250 ~Gl---Y-yS~~---DW~---~p~y~~--d~~----------~~~~-~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
|.+ | |+.- .++ .|.|.. +.. +.+. ..+-+.+++..-++-.+.+|++|.+=||-..
T Consensus 245 VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~ 322 (605)
T TIGR02104 245 VIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMG 322 (605)
T ss_pred EEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechh
Confidence 977 4 2210 111 122210 100 1111 1344567778888888899999999999763
No 50
>PRK10658 putative alpha-glucosidase; Provisional
Probab=66.98 E-value=29 Score=38.10 Aligned_cols=98 Identities=15% Similarity=0.100 Sum_probs=53.3
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 178 DFTAEFF-DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 178 ~Fnp~~F-DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
.|++++| ||++.++.+++.|.|-++.+--+- . . . -++.++++++ |.=+-- -..
T Consensus 318 ~wd~~~FPdp~~mi~~L~~~G~k~~~~i~P~i----------~-----~----~----s~~f~e~~~~--gy~vk~-~~G 371 (665)
T PRK10658 318 EWDPRTFPDPEGMLKRLKAKGLKICVWINPYI----------A-----Q----K----SPLFKEGKEK--GYLLKR-PDG 371 (665)
T ss_pred EEChhhCCCHHHHHHHHHHCCCEEEEeccCCc----------C-----C----C----chHHHHHHHC--CeEEEC-CCC
Confidence 4678888 999999999999999766542110 1 0 1 1344455556 432200 000
Q ss_pred ccccCccccCc-cCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 257 YEWFNPLYVQD-KANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 257 ~DW~~p~y~~d-~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
-.|....|... .--+++..+- .+++..++++|++ .++|.+|+|.+
T Consensus 372 ~~~~~~~W~g~~~~~Dftnp~a-r~W~~~~~~~l~d-~Gvdgfw~D~g 417 (665)
T PRK10658 372 SVWQWDKWQPGMAIVDFTNPDA-CKWYADKLKGLLD-MGVDCFKTDFG 417 (665)
T ss_pred CEeeeeecCCCceeecCCCHHH-HHHHHHHHHHHHh-cCCcEEEecCC
Confidence 01111111111 1123333232 3566788888875 79999999976
No 51
>PLN02808 alpha-galactosidase
Probab=66.72 E-value=7.9 Score=39.88 Aligned_cols=55 Identities=24% Similarity=0.364 Sum_probs=35.2
Q ss_pred HHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCC--ChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 193 LASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKR--DLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 193 ak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkR--DlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
++++|-+||++= || |-.+...........|.| +=++.|++.++++ |||||+|-..
T Consensus 63 l~~~Gy~yv~iD----d~---W~~~~rd~~G~~~~d~~rFP~G~~~lad~iH~~--GlkfGiy~~~ 119 (386)
T PLN02808 63 LAALGYKYINLD----DC---WAELKRDSQGNLVPKASTFPSGIKALADYVHSK--GLKLGIYSDA 119 (386)
T ss_pred hHHhCCEEEEEc----CC---cCCCCcCCCCCEeeChhhcCccHHHHHHHHHHC--CCceEEEecC
Confidence 688999999993 33 433321011111112223 3399999999999 9999999864
No 52
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=64.94 E-value=6.6 Score=36.34 Aligned_cols=59 Identities=19% Similarity=0.155 Sum_probs=40.3
Q ss_pred HHHHHHcCCcEEEEeeeccCCCccCCCCCC-CCccccCCCC-CCChHHHHHHHHHhhcCCceEEE
Q psy110 190 ADILASSGAKYVVLTSKHHEGYTLWPSKYA-FSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFaLWdSk~t-~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
++-+|+.|+..|.|+-=...+. +...|. .++..++..- ..+=+++|+++|+++ ||||.+
T Consensus 10 Ldyl~~lGv~~I~l~Pi~~~~~--~~~gY~~~d~~~vd~~~Gt~~d~~~Lv~~~h~~--gi~Vil 70 (316)
T PF00128_consen 10 LDYLKDLGVNAIWLSPIFESPN--GYHGYDPSDYYAVDPRFGTMEDFKELVDAAHKR--GIKVIL 70 (316)
T ss_dssp HHHHHHHTESEEEESS-EESSS--STTTTSESEEEEESTTTBHHHHHHHHHHHHHHT--TCEEEE
T ss_pred hHHHHHcCCCceeccccccccc--ccccccceeeeccccccchhhhhhhhhhccccc--cceEEE
Confidence 5688999999999987666433 222232 1344443322 356699999999999 999988
No 53
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=64.31 E-value=37 Score=31.32 Aligned_cols=101 Identities=15% Similarity=0.073 Sum_probs=58.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCC--CCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc-ccccC
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA--FSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL-YEWFN 261 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t--~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~-~DW~~ 261 (358)
..++..+.++++|++.|=+-.- |+.-.. .+++ .....-+-+.+++++|+++ ||++-+-++. ..|..
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~-------~~~~~~~~~~~~--~~~~~~~~ld~~v~~a~~~--gi~vild~h~~~~w~~ 90 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVG-------WEAYQEPNPGYN--YDETYLARLDRIVDAAQAY--GIYVILDLHNAPGWAN 90 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEE-------STSTSTTSTTTS--BTHHHHHHHHHHHHHHHHT--T-EEEEEEEESTTCSS
T ss_pred CHHHHHHHHHHCCCCEEEeCCC-------HHHhcCCCCCcc--ccHHHHHHHHHHHHHHHhC--CCeEEEEeccCccccc
Confidence 8899999999999999866555 322111 0110 0011347789999999999 9999774433 34421
Q ss_pred ccccCccCCCCCchHHhhhhhHHHHHHHHhcC--CCCEEEEeC
Q psy110 262 PLYVQDKANNFTTNQFVTMKTLPELIEIVQKY--QPEVIWSDG 302 (358)
Q Consensus 262 p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY--~PDilWfDg 302 (358)
.. ..+....-..+.+..-++.|..+| .+.++-+|.
T Consensus 91 ~~------~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~el 127 (281)
T PF00150_consen 91 GG------DGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGWEL 127 (281)
T ss_dssp ST------STTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEEES
T ss_pred cc------cccccchhhHHHHHhhhhhhccccCCCCcEEEEEe
Confidence 11 111111111223334577888888 456777786
No 54
>cd06419 GH25_muramidase_2 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=64.28 E-value=11 Score=34.88 Aligned_cols=45 Identities=18% Similarity=0.307 Sum_probs=31.6
Q ss_pred HHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEee
Q psy110 189 WADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYH 254 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYy 254 (358)
|.++ |+.|+++|++-|. +|=.. .-+-..+-.+.||+. ||++|+||
T Consensus 22 w~~v-~~~gi~Fv~iKAT--EG~~~----------------~D~~f~~n~~~A~~~--Gl~vGaYH 66 (190)
T cd06419 22 FNSL-QSNGISFVYLRAT--QGASY----------------FDDNFLSNFSRAQGT--GLSVGVIH 66 (190)
T ss_pred HHHH-HhCCCeEEEEEee--cCCCc----------------cChhHHHHHHHHHHC--CCCEEEEE
Confidence 6554 6789999999762 22111 113356778999999 99999996
No 55
>cd06413 GH25_muramidase_1 Uncharacterized bacterial muramidase containing a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=63.39 E-value=11 Score=34.35 Aligned_cols=45 Identities=22% Similarity=0.414 Sum_probs=32.2
Q ss_pred HHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEee
Q psy110 189 WADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYH 254 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYy 254 (358)
|.++ |++|.+++++=+. +|-. +. -+-..+-.+.||+. ||++|+||
T Consensus 17 ~~~v-k~~gi~fviiKat--eG~~-----~~-----------D~~~~~~~~~a~~~--Gl~vG~Yh 61 (191)
T cd06413 17 WARV-RAQGVSFAYIKAT--EGGD-----HV-----------DKRFAENWRGARAA--GLPRGAYH 61 (191)
T ss_pred HHHH-HhCCCcEEEEEEc--CCCC-----cc-----------CHHHHHHHHHHHHc--CCceEEEE
Confidence 5554 8899999999874 2211 11 13455778899999 99999995
No 56
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=63.09 E-value=17 Score=36.35 Aligned_cols=141 Identities=18% Similarity=0.326 Sum_probs=72.9
Q ss_pred CCCCCCHHHH---HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCC---CCChHHHHHHHHHhhcCCceEEEe
Q psy110 180 TAEFFDANHW---ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP---KRDLVGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 180 np~~FDpdeW---a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gp---kRDlV~Ela~A~Rk~~~GLk~GlY 253 (358)
+|+.++.++| ++++|++|+..|-+.. ..|......+ .-+.+..+++.|+++ |||+.+-
T Consensus 3 ~pe~~~~e~~~~d~~~m~~~G~n~vri~~--------------~~W~~lEP~eG~ydF~~lD~~l~~a~~~--Gi~viL~ 66 (374)
T PF02449_consen 3 YPEQWPEEEWEEDLRLMKEAGFNTVRIGE--------------FSWSWLEPEEGQYDFSWLDRVLDLAAKH--GIKVILG 66 (374)
T ss_dssp -GGGS-CCHHHHHHHHHHHHT-SEEEE-C--------------CEHHHH-SBTTB---HHHHHHHHHHHCT--T-EEEEE
T ss_pred CcccCCHHHHHHHHHHHHHcCCCEEEEEE--------------echhhccCCCCeeecHHHHHHHHHHHhc--cCeEEEE
Confidence 3455565555 6788999999987632 1333332222 346689999999999 9999874
Q ss_pred e---Cccccc---CccccC-ccCC-----------CCCchHHhhhhhHHHHHHHHhcCC--CCEE-E-EeCCCCCCcccc
Q psy110 254 H---SLYEWF---NPLYVQ-DKAN-----------NFTTNQFVTMKTLPELIEIVQKYQ--PEVI-W-SDGEWEAPAEYW 311 (358)
Q Consensus 254 y---S~~DW~---~p~y~~-d~~~-----------~~~~~~y~~~~~~~Ql~ELi~rY~--PDil-W-fDg~w~~p~~~~ 311 (358)
. +..+|. +|.... +..+ .+....| .+++..-+++|..+|+ |-++ | .|........+.
T Consensus 67 ~~~~~~P~Wl~~~~Pe~~~~~~~g~~~~~g~~~~~~~~~p~y-r~~~~~~~~~l~~~y~~~p~vi~~~i~NE~~~~~~~~ 145 (374)
T PF02449_consen 67 TPTAAPPAWLYDKYPEILPVDADGRRRGFGSRQHYCPNSPAY-REYARRFIRALAERYGDHPAVIGWQIDNEPGYHRCYS 145 (374)
T ss_dssp ECTTTS-HHHHCCSGCCC-B-TTTSBEECCCSTT-HCCHHHH-HHHHHHHHHHHHHHHTTTTTEEEEEECCSTTCTS--S
T ss_pred ecccccccchhhhcccccccCCCCCcCccCCccccchhHHHH-HHHHHHHHHHHHhhccccceEEEEEeccccCcCcCCC
Confidence 3 245673 333211 1100 0112233 5666777888899995 6664 3 333221111111
Q ss_pred --ChHHHHHHHHhcCCCCCcEEEecccCCC
Q psy110 312 --KSREFLAWLYNESPVKNTVVVNDRWCNT 339 (358)
Q Consensus 312 --~~~e~~a~~yn~~~~~~~VvvNdR~g~~ 339 (358)
....|..||.++-. .---.|.+||..
T Consensus 146 ~~~~~~f~~wLk~kY~--ti~~LN~aWgt~ 173 (374)
T PF02449_consen 146 PACQAAFRQWLKEKYG--TIEALNRAWGTA 173 (374)
T ss_dssp HHHHHHHHHHHHHHHS--SHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHhC--CHHHHHHHHcCC
Confidence 13568888865421 111457888764
No 57
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=62.81 E-value=43 Score=33.24 Aligned_cols=104 Identities=16% Similarity=0.196 Sum_probs=58.2
Q ss_pred HHHHHHHHHHcCCcEEEEeee--ccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcc---ccc
Q psy110 186 ANHWADILASSGAKYVVLTSK--HHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLY---EWF 260 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaK--HHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~---DW~ 260 (358)
..+-|+.+++.|.-.-++... +.++++. ..|+..+-. | .++|++.++++ |+|+.++..+. +-.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~~~------f~~d~~~fP---d-p~~m~~~l~~~--g~~~~~~~~P~v~~~~~ 93 (339)
T cd06604 26 VREIADEFRERDIPCDAIYLDIDYMDGYRV------FTWDKERFP---D-PKELIKELHEQ--GFKVVTIIDPGVKVDPG 93 (339)
T ss_pred HHHHHHHHHHhCCCcceEEECchhhCCCCc------eeeccccCC---C-HHHHHHHHHHC--CCEEEEEEeCceeCCCC
Confidence 355666666666665555442 3333322 234432221 3 47999999999 99999875532 110
Q ss_pred CccccC---------ccC---------------CCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 261 NPLYVQ---------DKA---------------NNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 261 ~p~y~~---------d~~---------------~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
.+.|.. +.. -+++..+- .+++..++++++ +++.|.+|+|++
T Consensus 94 ~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a-~~ww~~~~~~~~-~~Gvdg~w~D~~ 158 (339)
T cd06604 94 YDVYEEGLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKV-REWWGSLYKKFV-DLGVDGIWNDMN 158 (339)
T ss_pred ChHHHHHHHCCeEEECCCCCEEEEEecCCCccccCCCChHH-HHHHHHHHHHHh-hCCCceEeecCC
Confidence 111110 000 12332222 246677888887 689999999987
No 58
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=62.80 E-value=15 Score=33.33 Aligned_cols=46 Identities=17% Similarity=0.210 Sum_probs=36.0
Q ss_pred CHHHH-HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEee
Q psy110 185 DANHW-ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYH 254 (358)
Q Consensus 185 DpdeW-a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYy 254 (358)
||..+ ++.+.++||.++++-.. + ...-+.++.+.||++ |+++++-.
T Consensus 63 d~~~~~~~~~~~~Gad~i~vh~~------------~----------~~~~~~~~i~~~~~~--g~~~~~~~ 109 (206)
T TIGR03128 63 DAGEYEAEQAFAAGADIVTVLGV------------A----------DDATIKGAVKAAKKH--GKEVQVDL 109 (206)
T ss_pred cchHHHHHHHHHcCCCEEEEecc------------C----------CHHHHHHHHHHHHHc--CCEEEEEe
Confidence 88889 99999999999885322 1 013467899999999 99999863
No 59
>cd06524 GH25_YegX-like YegX is an uncharacterized bacterial protein with a glycosyl hydrolase family 25 (GH25) catalytic domain that is similar in sequence to the CH-type (Chalaropsis-type) lysozymes of the GH25 family of endolysins.
Probab=62.24 E-value=11 Score=34.29 Aligned_cols=47 Identities=17% Similarity=0.304 Sum_probs=34.4
Q ss_pred HHHH---HHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeC
Q psy110 189 WADI---LASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS 255 (358)
Q Consensus 189 Wa~l---ak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS 255 (358)
|.++ +|++|++++++-+.. | +.+. -.-..+-.+.||+. ||++|+||=
T Consensus 14 ~~~~~~~~k~~gi~fviikate--G-----~~~~-----------D~~~~~n~~~a~~a--Gl~~G~Yhf 63 (194)
T cd06524 14 WQKVKAKVKDSPVAFVFIKATE--G-----VDIV-----------DPDFPTNWEGAKEA--GIIRGAYHF 63 (194)
T ss_pred hhhhhhhhhhcCccEEEEEecC--C-----CCcc-----------ChHHHHHHHHHHHc--CCceEEEEE
Confidence 6665 889999999998843 2 1111 12456788999999 999999953
No 60
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=61.60 E-value=29 Score=34.22 Aligned_cols=106 Identities=14% Similarity=0.192 Sum_probs=60.8
Q ss_pred HHHHHHHHHHcCCcEEEEeee--ccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcc---ccc
Q psy110 186 ANHWADILASSGAKYVVLTSK--HHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLY---EWF 260 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaK--HHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~---DW~ 260 (358)
..+.++.+++.+.-.-++... +-++++ ...|+...-. | .++|++.++++ |+|+.++..+. +=.
T Consensus 26 v~~~~~~~~~~~iP~d~i~lD~~~~~~~~------~f~~d~~~FP---d-p~~~i~~l~~~--g~k~~~~~~P~i~~~~~ 93 (317)
T cd06600 26 VVEVVDIMQKEGFPYDVVFLDIHYMDSYR------LFTWDPYRFP---E-PKKLIDELHKR--NVKLVTIVDPGIRVDQN 93 (317)
T ss_pred HHHHHHHHHHcCCCcceEEEChhhhCCCC------ceeechhcCC---C-HHHHHHHHHHC--CCEEEEEeeccccCCCC
Confidence 456666666666655554443 222222 1234433221 4 36999999999 99999875431 100
Q ss_pred Ccccc---------Ccc---------------CCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 261 NPLYV---------QDK---------------ANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 261 ~p~y~---------~d~---------------~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
.+.|. ... .-+++..+- .+.+..++++++.+++.|.+|+|++-
T Consensus 94 ~~~~~~~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a-~~ww~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 94 YSPFLSGMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDT-REWWAGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred ChHHHHHHHCCEEEECCCCCeEEEeecCCCccccCCCChHH-HHHHHHHHHHHhhcCCCceEEeeCCC
Confidence 11110 000 012333333 35778899999999999999999873
No 61
>PRK03705 glycogen debranching enzyme; Provisional
Probab=61.25 E-value=1.8e+02 Score=32.03 Aligned_cols=147 Identities=14% Similarity=0.144 Sum_probs=79.4
Q ss_pred HHHHHHHcCCcEEEEeeeccC---------CC-ccCCCCCCCCccccCCCCCC------ChHHHHHHHHHhhcCCceEEE
Q psy110 189 WADILASSGAKYVVLTSKHHE---------GY-TLWPSKYAFSWNSMDIGPKR------DLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHHD---------GF-aLWdSk~t~~~ns~~~gpkR------DlV~Ela~A~Rk~~~GLk~Gl 252 (358)
-++-+|+.|...|-|+--+.- |. ..|-=... +|.+++..-.. +=+++|+++|+++ ||||.+
T Consensus 184 ~LdYLk~LGvt~I~L~Pv~~~~~~~~~~~~g~~~ywGYd~~-~yfa~d~~ygt~~~~~~~efk~LV~~~H~~--GI~VIl 260 (658)
T PRK03705 184 MIAYLKQLGITALELLPVAQFASEPRLQRMGLSNYWGYNPL-AMFALDPAYASGPETALDEFRDAVKALHKA--GIEVIL 260 (658)
T ss_pred chHHHHHcCCCEEEecCcccCCCcccccccccccccCcccc-cccccccccCCCCcchHHHHHHHHHHHHHC--CCEEEE
Confidence 377899999999977654321 10 11221122 34444432222 3689999999999 999977
Q ss_pred ---e-eCc-ccccC----------ccc-cCccCC----------CCC-chHHhhhhhHHHHHHHHhcCCCCEEEEeCCCC
Q psy110 253 ---Y-HSL-YEWFN----------PLY-VQDKAN----------NFT-TNQFVTMKTLPELIEIVQKYQPEVIWSDGEWE 305 (358)
Q Consensus 253 ---Y-yS~-~DW~~----------p~y-~~d~~~----------~~~-~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~ 305 (358)
| |+. .+-.. +.| ..+... .+. ...-+.+++.+-++-.++.|++|.+=||-.-.
T Consensus 261 DvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~ 340 (658)
T PRK03705 261 DVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATV 340 (658)
T ss_pred EEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhh
Confidence 4 221 11111 111 100000 111 12345677788888888999999999996422
Q ss_pred C--CccccChHHHHHHHHhcCCCCCcEEEecccCC
Q psy110 306 A--PAEYWKSREFLAWLYNESPVKNTVVVNDRWCN 338 (358)
Q Consensus 306 ~--p~~~~~~~e~~a~~yn~~~~~~~VvvNdR~g~ 338 (358)
. ....+....+++-+.....+....++=.-|..
T Consensus 341 l~~~~~~~~~~~~~~ai~~d~vl~~~~ligE~Wd~ 375 (658)
T PRK03705 341 LGRTPEFRQDAPLFTAIQNDPVLSQVKLIAEPWDI 375 (658)
T ss_pred hCcCcccchhhHHHHHHhhCccccceEEEEecccC
Confidence 1 12344445566666543222334455555543
No 62
>PRK12568 glycogen branching enzyme; Provisional
Probab=61.19 E-value=70 Score=35.78 Aligned_cols=112 Identities=18% Similarity=0.200 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCcEEEEeee--ccCCCccCCCCCCCCccccCCC-CCCChHHHHHHHHHhhcCCceEEE---e-eCccc-
Q psy110 187 NHWADILASSGAKYVVLTSK--HHEGYTLWPSKYAFSWNSMDIG-PKRDLVGELATAIRRKYSDIHFGL---Y-HSLYE- 258 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaK--HHDGFaLWdSk~t~~~ns~~~g-pkRDlV~Ela~A~Rk~~~GLk~Gl---Y-yS~~D- 258 (358)
++.++-+|+.|...|-|+-- |-.+ .-|-=..+ .+.+++.. ...+=+++|+++|+++ ||+|-+ | |...|
T Consensus 273 ~~ll~ylk~LGvt~I~LmPi~e~~~~-~~wGY~~~-~~~a~~~~~G~~~dfk~lV~~~H~~--Gi~VIlD~V~nH~~~d~ 348 (730)
T PRK12568 273 EQLIPYVQQLGFTHIELLPITEHPFG-GSWGYQPL-GLYAPTARHGSPDGFAQFVDACHRA--GIGVILDWVSAHFPDDA 348 (730)
T ss_pred HHHHHHHHHcCCCEEEECccccCCCC-CCCCCCCC-cCCccCcccCCHHHHHHHHHHHHHC--CCEEEEEeccccCCccc
Confidence 45677889999999877654 4321 11211112 22223221 1456799999999999 999987 2 21122
Q ss_pred ----ccC--cccc--CccC---CCCC------chHHhhhhhHHHHHHHHhcCCCCEEEEeC
Q psy110 259 ----WFN--PLYV--QDKA---NNFT------TNQFVTMKTLPELIEIVQKYQPEVIWSDG 302 (358)
Q Consensus 259 ----W~~--p~y~--~d~~---~~~~------~~~y~~~~~~~Ql~ELi~rY~PDilWfDg 302 (358)
+++ ..|. .+.. ..+. ...-+.+++..-++=.+++|++|.+=+|.
T Consensus 349 ~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DA 409 (730)
T PRK12568 349 HGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDA 409 (730)
T ss_pred cccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHHHHhCceEEEEcC
Confidence 111 1111 0000 1111 12335677788888889999999999994
No 63
>cd06415 GH25_Cpl1-like Cpl-1 lysin (also known as Cpl-9 lysozyme / muramidase) is a bacterial cell wall endolysin encoded by the pneumococcal bacteriophage Cp-1, which cleaves the glycosidic N-acetylmuramoyl-(beta1,4)-N-acetylglucosamine bonds of the pneumococcal glycan chain, thus acting as an enzymatic antimicrobial agent (an enzybiotic) against streptococcal infections. Cpl-1 belongs to the CP family of lysozymes (CPL lysozymes) which includes the Cpl-7 lysin. Cpl-1 has a glycosyl hydrolase family 25 (GH25) catalytic domain with an irregular (beta/alpha)5-beta3 barrel and a C-terminal cell wall-anchoring module formed by six similar choline-binding repeats (ChBr's). The ChBr's facilitate the anchoring of Cpl-1 to the choline-containing teichoic acid of the pneumococcal cell wall. Other members of this domain family have an N-terminal CHAP (cysteine, histidine-dependent amidohydrolases/peptidases) domain similar to that of the firmicute CHAP lysins and associated with endopeptidase
Probab=60.02 E-value=17 Score=33.28 Aligned_cols=42 Identities=17% Similarity=0.305 Sum_probs=31.8
Q ss_pred HHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEee
Q psy110 193 LASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYH 254 (358)
Q Consensus 193 ak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYy 254 (358)
+|++|++++|+=+-.=.+ +. + .-..+-.+.||+. ||++|+||
T Consensus 17 ~~~~g~~fviiKateG~~-------~~------d-----~~~~~n~~~A~~a--Gl~vG~Yh 58 (196)
T cd06415 17 YGQAGAKFAIVKISEGTN-------YV------N-----PKASAQVSSAIAN--GKMTGGYH 58 (196)
T ss_pred HHhCCCcEEEEEEcCCCc-------cC------C-----ccHHHHHHHHHHC--CCeeEEEE
Confidence 789999999998853211 11 1 1367889999999 99999996
No 64
>cd06525 GH25_Lyc-like Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.
Probab=59.72 E-value=13 Score=33.45 Aligned_cols=45 Identities=20% Similarity=0.456 Sum_probs=32.0
Q ss_pred HHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEee
Q psy110 189 WADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYH 254 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYy 254 (358)
|-++ |++|++++++-+-. |-. +. -.-...-.+.||+. ||++|+||
T Consensus 14 ~~~~-k~~gi~fviiKate--G~~-----y~-----------D~~~~~~~~~a~~a--Gl~~G~Yh 58 (184)
T cd06525 14 FNAV-KDSGVEVVYIKATE--GTT-----FV-----------DSYFNENYNGAKAA--GLKVGFYH 58 (184)
T ss_pred HHHH-HhCCCeEEEEEecC--CCc-----cc-----------CHhHHHHHHHHHHC--CCceEEEE
Confidence 5554 67899999998842 211 11 13466778999999 99999996
No 65
>PF01183 Glyco_hydro_25: Glycosyl hydrolases family 25; InterPro: IPR002053 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 25 GH25 from CAZY comprises enzymes with only one known activity; lysozyme (3.2.1.17 from EC). It has been shown [, ] that a number of cell-wall lytic enzymes are evolutionary related and can be classified into a single family. Two residues, an aspartate and a glutamate, have been shown [] to be important for the catalytic activity of the Charalopsis enzyme. These residues as well as some others in their vicinity are conserved in all proteins from this family.; GO: 0003796 lysozyme activity, 0009253 peptidoglycan catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 1JFX_A 2WW5_A 2WWD_A 2WWC_A 2X8R_D 2J8F_A 1OBA_A 2IXU_A 2J8G_A 2IXV_A ....
Probab=59.60 E-value=10 Score=33.79 Aligned_cols=47 Identities=15% Similarity=0.400 Sum_probs=32.6
Q ss_pred HHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 189 WADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
|-+ +|++|.+++++-+-. |-..-| .-..+-.++||++ ||++|+||-.
T Consensus 12 w~~-~k~~gi~fviikate--G~~~~D----------------~~~~~n~~~a~~a--Gl~~G~Yhf~ 58 (181)
T PF01183_consen 12 WQK-VKAAGIDFVIIKATE--GTSYVD----------------PYFESNIKNAKAA--GLPVGAYHFA 58 (181)
T ss_dssp HHH-HHHTTEEEEEEEEEE--TTTEE-----------------TTHHHHHHHHHHT--TSEEEEEEE-
T ss_pred HHH-HHHCCCCEEEEEeee--CCCeec----------------chHHHHHHHHHHc--CCeEEEEEEe
Confidence 444 499999999999853 211111 2355778899999 9999999653
No 66
>PRK12677 xylose isomerase; Provisional
Probab=59.41 E-value=24 Score=36.06 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEe
Q psy110 182 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 182 ~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY 253 (358)
..+|+++.++.++++|++.|-+ |.+...-|++... -+...++++.+++++. ||++...
T Consensus 29 ~~~~~~E~v~~~a~~Gf~gVEl---h~~~l~p~~~~~~---------~~~~~~~~lk~~l~~~--GL~v~~v 86 (384)
T PRK12677 29 PPLDPVEAVHKLAELGAYGVTF---HDDDLVPFGATDA---------ERDRIIKRFKKALDET--GLVVPMV 86 (384)
T ss_pred CCCCHHHHHHHHHHhCCCEEEe---cccccCCCCCChh---------hhHHHHHHHHHHHHHc--CCeeEEE
Confidence 3579999999999999999876 5554333333221 0123789999999999 9998764
No 67
>cd06412 GH25_CH-type CH-type (Chalaropsis-type) lysozymes represent one of four functionally-defined classes of peptidoglycan hydrolases (also referred to as endo-N-acetylmuramidases) that cleave bacterial cell wall peptidoglycans. CH-type lysozymes exhibit both lysozyme (acetylmuramidase) and diacetylmuramidase activity. The first member of this family to be described was a muramidase from the fungus Chalaropsis. However, a majority of the CH-type lysozymes are found in bacteriophages and Gram-positive bacteria such as Streptomyces and Clostridium. CH-type lysozymes have a single glycosyl hydrolase family 25 (GH25) domain with an unusual beta/alpha-barrel fold in which the last strand of the barrel is antiparallel to strands beta7 and beta1. Most CH-type lysozymes appear to lack the cell wall-binding domain found in other GH25 muramidases.
Probab=57.98 E-value=16 Score=33.52 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=31.0
Q ss_pred HHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeC
Q psy110 192 ILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS 255 (358)
Q Consensus 192 lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS 255 (358)
.+|++|++++++=+- +|- .+. -.-..+-.+.||+. ||++|+||=
T Consensus 17 ~vk~~g~~fviiKat--eG~-----~~~-----------D~~~~~n~~~A~~a--Gl~~G~Yhf 60 (199)
T cd06412 17 GAAANGARFAYVKAT--EGT-----SYT-----------NPRFSSQYNGAYNA--GLIRGAYHF 60 (199)
T ss_pred HHHhCCCeEEEEEEe--cCC-----Ccc-----------ChhHHHHHHHHHHc--CCceEEEEE
Confidence 466789999999884 221 111 12356778899999 999999963
No 68
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=56.87 E-value=30 Score=34.41 Aligned_cols=55 Identities=25% Similarity=0.348 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeC
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS 255 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS 255 (358)
+.+-|+.+++.|.|++|||+-++|.+ . + .+.+-+.++++++++..|++++.+..+
T Consensus 96 i~~~a~~~~~~GlkevvLTsv~~ddl-------~-d-------~g~~~l~~li~~I~~~~p~i~Ievl~~ 150 (302)
T TIGR00510 96 PAKLAETIKDMGLKYVVITSVDRDDL-------E-D-------GGASHLAECIEAIREKLPNIKIETLVP 150 (302)
T ss_pred HHHHHHHHHHCCCCEEEEEeecCCCc-------c-c-------ccHHHHHHHHHHHHhcCCCCEEEEeCC
Confidence 56677788889999999999998732 1 0 123568899999998756788777543
No 69
>PRK14705 glycogen branching enzyme; Provisional
Probab=55.20 E-value=77 Score=37.53 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=73.5
Q ss_pred hhhhhcCCCCC-CCC--HHHHHHHHHHcCCcEEEEe--eeccCCCccCCCCCCCCccccCCCC-CCChHHHHHHHHHhhc
Q psy110 172 YQDFAKDFTAE-FFD--ANHWADILASSGAKYVVLT--SKHHEGYTLWPSKYAFSWNSMDIGP-KRDLVGELATAIRRKY 245 (358)
Q Consensus 172 Y~dfa~~Fnp~-~FD--pdeWa~lak~AGAKYvVlT--aKHHDGFaLWdSk~t~~~ns~~~gp-kRDlV~Ela~A~Rk~~ 245 (358)
|+--+..|+.. .|. +++-++-+|+.|...|-|+ .+|-.+ .-|-=..+ +|.++...- .-|=+++|+++|+++
T Consensus 751 YEvHvgsf~~~~~~~~l~~~lldYlk~LGvt~IeLmPv~e~p~~-~swGY~~~-~y~ap~~ryGt~~dfk~lVd~~H~~- 827 (1224)
T PRK14705 751 YEVHLGSWRLGLGYRELAKELVDYVKWLGFTHVEFMPVAEHPFG-GSWGYQVT-SYFAPTSRFGHPDEFRFLVDSLHQA- 827 (1224)
T ss_pred EEEEecccccCCchHHHHHHHHHHHHHhCCCEEEECccccCCCC-CCCCCCcc-ccCCcCcccCCHHHHHHHHHHHHHC-
Confidence 44444455442 233 3566788999999988665 445322 12322233 344443221 346689999999999
Q ss_pred CCceEEE---e-eCcc-ccc----C--ccccC-cc----CCCCC------chHHhhhhhHHHHHHHHhcCCCCEEEEeC
Q psy110 246 SDIHFGL---Y-HSLY-EWF----N--PLYVQ-DK----ANNFT------TNQFVTMKTLPELIEIVQKYQPEVIWSDG 302 (358)
Q Consensus 246 ~GLk~Gl---Y-yS~~-DW~----~--p~y~~-d~----~~~~~------~~~y~~~~~~~Ql~ELi~rY~PDilWfDg 302 (358)
||+|.+ | |... .|. . +.|.. +. ...+. ...-+.+++..-++-.+++|++|.+=||.
T Consensus 828 -GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Da 905 (1224)
T PRK14705 828 -GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDA 905 (1224)
T ss_pred -CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEee
Confidence 999987 3 2212 232 1 11210 00 01111 23345678888888889999999998886
No 70
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=55.19 E-value=25 Score=34.75 Aligned_cols=109 Identities=17% Similarity=0.188 Sum_probs=61.4
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCcc-CCCCC------CCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcc-
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTL-WPSKY------AFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLY- 257 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaL-WdSk~------t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~- 257 (358)
..+.++.+++.|...-|+... ...- +.+.. ...|+..+- | | .++|++..+++ |+|+.+..-+.
T Consensus 25 v~~~~~~~~~~~iP~d~i~ld---dw~~~~~~~~g~~~~~~f~~d~~~F-P--d-p~~mi~~Lh~~--G~~~~~~i~P~v 95 (317)
T cd06594 25 VLEALEKARAAGVKVAGLWLQ---DWTGRRETSFGDRLWWNWEWDPERY-P--G-LDELIEELKAR--GIRVLTYINPYL 95 (317)
T ss_pred HHHHHHHHHHcCCCeeEEEEc---cccCcccccccceeeeeeEEChhhC-C--C-HHHHHHHHHHC--CCEEEEEecCce
Confidence 466777777888777777552 1110 00000 012222211 1 3 67999999999 99999865431
Q ss_pred cccCcc-ccC---------cc-CC--------------CCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 258 EWFNPL-YVQ---------DK-AN--------------NFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 258 DW~~p~-y~~---------d~-~~--------------~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
.-..+. |.. +. .. +++..+ ..+.+..++++++.+++.|.+|+|++-
T Consensus 96 ~~~~~~~y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~-a~~ww~~~~~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 96 ADDGPLYYEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPA-ARDWFKQVIKEMLLDLGLSGWMADFGE 166 (317)
T ss_pred ecCCchhHHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHH-HHHHHHHHHHHHhhhcCCcEEEecCCC
Confidence 100111 110 00 00 122222 246778899999888999999999873
No 71
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=52.74 E-value=35 Score=39.30 Aligned_cols=27 Identities=37% Similarity=0.395 Sum_probs=22.7
Q ss_pred CCCCCCC-CHHHHHHHHHHcCCcEEEEe
Q psy110 178 DFTAEFF-DANHWADILASSGAKYVVLT 204 (358)
Q Consensus 178 ~Fnp~~F-DpdeWa~lak~AGAKYvVlT 204 (358)
+|++++| ||++.++.+++.|+|.+.++
T Consensus 234 TwD~~rFPdP~~mv~~Lh~~G~kvv~ii 261 (978)
T PLN02763 234 TFDKERFPDPKGLADDLHSIGFKAIWML 261 (978)
T ss_pred eECcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 4677766 89999999999999987765
No 72
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=52.36 E-value=1.1e+02 Score=27.86 Aligned_cols=20 Identities=0% Similarity=0.082 Sum_probs=16.9
Q ss_pred HHHHHHHhcCCCCEEEEeCC
Q psy110 284 PELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 284 ~Ql~ELi~rY~PDilWfDg~ 303 (358)
+.+.|-|.+.+||+||.-.+
T Consensus 90 ~~i~~~I~~s~~dil~VglG 109 (177)
T TIGR00696 90 KAALAKIARSGAGIVFVGLG 109 (177)
T ss_pred HHHHHHHHHcCCCEEEEEcC
Confidence 45778888999999998876
No 73
>PLN02692 alpha-galactosidase
Probab=51.95 E-value=21 Score=37.26 Aligned_cols=53 Identities=21% Similarity=0.337 Sum_probs=33.4
Q ss_pred HHHcCCcEEEEeeeccCCCccCCCCCCC---Cccc-cCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 193 LASSGAKYVVLTSKHHEGYTLWPSKYAF---SWNS-MDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 193 ak~AGAKYvVlTaKHHDGFaLWdSk~t~---~~ns-~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
++++|-+||++=- | |-.+... +|-. ...=| +=++.|++.++++ |||||+|-..
T Consensus 87 l~~~Gy~yv~iDD----g---W~~~~rd~~G~~~~d~~kFP--~G~k~ladyiH~~--GLKfGIy~d~ 143 (412)
T PLN02692 87 LSKLGYTYVNIDD----C---WAEIARDEKGNLVPKKSTFP--SGIKALADYVHSK--GLKLGIYSDA 143 (412)
T ss_pred chhcCcEEEEEcC----C---cCCCCCCCCCCeeeChhhcC--CcHHHHHHHHHHC--CCceEEEecC
Confidence 5788999998743 2 4322210 1110 01112 2389999999999 9999999764
No 74
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=51.84 E-value=70 Score=36.64 Aligned_cols=73 Identities=14% Similarity=0.236 Sum_probs=44.2
Q ss_pred hHHHHHHHHHhhcCCceEEE---eeCc----------ccccCccccC--ccCC---------CCC-chHHhhhhhHHHHH
Q psy110 233 LVGELATAIRRKYSDIHFGL---YHSL----------YEWFNPLYVQ--DKAN---------NFT-TNQFVTMKTLPELI 287 (358)
Q Consensus 233 lV~Ela~A~Rk~~~GLk~Gl---YyS~----------~DW~~p~y~~--d~~~---------~~~-~~~y~~~~~~~Ql~ 287 (358)
=+++|+++|+++ ||+|.+ |-+. ++-..|.|-. +..+ +.. ....+.+++.+-++
T Consensus 405 Efk~mV~alH~~--Gi~VIlDVVyNHt~~~g~~~~s~ld~~~P~YY~r~~~~G~~~n~~~~~d~a~e~~~Vrk~iiDsl~ 482 (898)
T TIGR02103 405 EFREMVQALNKT--GLNVVMDVVYNHTNASGPNDRSVLDKIVPGYYHRLNEDGGVENSTCCSNTATEHRMMAKLIVDSLV 482 (898)
T ss_pred HHHHHHHHHHHC--CCEEEEEeecccccccCccCcccccccCcHhhEeeCCCCCeecCCCCcCCCCCCHHHHHHHHHHHH
Confidence 478899999999 999977 4221 1111122210 0000 111 23455677778888
Q ss_pred HHHhcCCCCEEEEeCCCCCC
Q psy110 288 EIVQKYQPEVIWSDGEWEAP 307 (358)
Q Consensus 288 ELi~rY~PDilWfDg~w~~p 307 (358)
-.+.+|++|.+=||-....+
T Consensus 483 ~W~~ey~VDGFRfDlm~~~~ 502 (898)
T TIGR02103 483 VWAKDYKVDGFRFDLMGHHP 502 (898)
T ss_pred HHHHHcCCCEEEEechhhCC
Confidence 88889999999999654433
No 75
>PRK14706 glycogen branching enzyme; Provisional
Probab=50.20 E-value=1.4e+02 Score=32.84 Aligned_cols=112 Identities=14% Similarity=0.152 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCcEEEEe--eeccCCCccCCCCCCCCccccCCCC-CCChHHHHHHHHHhhcCCceEEE---e-eCccc-
Q psy110 187 NHWADILASSGAKYVVLT--SKHHEGYTLWPSKYAFSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL---Y-HSLYE- 258 (358)
Q Consensus 187 deWa~lak~AGAKYvVlT--aKHHDGFaLWdSk~t~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl---Y-yS~~D- 258 (358)
++.++-+|+.|...|-|+ ..|- +-.-|--..+ +|.+++..- ..+=+++|+++|+++ ||+|.+ | |...|
T Consensus 171 ~~l~~ylk~lG~t~velmPv~e~~-~~~~wGY~~~-~~~~~~~~~g~~~~~~~lv~~~H~~--gi~VilD~v~nH~~~~~ 246 (639)
T PRK14706 171 HRLGEYVTYMGYTHVELLGVMEHP-FDGSWGYQVT-GYYAPTSRLGTPEDFKYLVNHLHGL--GIGVILDWVPGHFPTDE 246 (639)
T ss_pred HHHHHHHHHcCCCEEEccchhcCC-CCCCCCcCcc-cccccccccCCHHHHHHHHHHHHHC--CCEEEEEecccccCcch
Confidence 345677999999998664 4441 1112333333 444444322 346689999999999 999987 3 22222
Q ss_pred --cc----Cccc--cCccC---CCCC------chHHhhhhhHHHHHHHHhcCCCCEEEEeC
Q psy110 259 --WF----NPLY--VQDKA---NNFT------TNQFVTMKTLPELIEIVQKYQPEVIWSDG 302 (358)
Q Consensus 259 --W~----~p~y--~~d~~---~~~~------~~~y~~~~~~~Ql~ELi~rY~PDilWfDg 302 (358)
+. .|.| ..+.. ..+. ...-+.+++..-++=.++.|++|.+=+|.
T Consensus 247 ~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Da 307 (639)
T PRK14706 247 SGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDA 307 (639)
T ss_pred hhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence 10 1212 11110 0111 12345678888888889999999999996
No 76
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=50.18 E-value=33 Score=32.53 Aligned_cols=45 Identities=9% Similarity=0.163 Sum_probs=37.2
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 187 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
+.+++.++++|++.+++.--| + +-+.++.+.||++ ||+.++..++
T Consensus 94 ~~fi~~~~~aG~~giiipDl~---------------------~--ee~~~~~~~~~~~--g~~~i~~i~P 138 (242)
T cd04724 94 ERFLRDAKEAGVDGLIIPDLP---------------------P--EEAEEFREAAKEY--GLDLIFLVAP 138 (242)
T ss_pred HHHHHHHHHCCCcEEEECCCC---------------------H--HHHHHHHHHHHHc--CCcEEEEeCC
Confidence 999999999999999885221 0 2467899999999 9999998775
No 77
>PRK10426 alpha-glucosidase; Provisional
Probab=49.73 E-value=1.2e+02 Score=33.29 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=64.3
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCcc--CCCCC--CCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcc-ccc
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTL--WPSKY--AFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLY-EWF 260 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaL--WdSk~--t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~-DW~ 260 (358)
..+.++.+++.|..--++...+-+|... |..+. +..|+..+- | | .++|++..+++ |+|+.++--+. .=.
T Consensus 223 v~~v~~~~r~~~IP~d~i~lddw~~~~~~~~g~~~~~~~~~d~~~F-P--d-p~~mi~~L~~~--G~k~v~~i~P~v~~~ 296 (635)
T PRK10426 223 VQKKLDTMRNAGVKVNGIWAQDWSGIRMTSFGKRLMWNWKWDSERY-P--Q-LDSRIKQLNEE--GIQFLGYINPYLASD 296 (635)
T ss_pred HHHHHHHHHHcCCCeeEEEEecccccccccccccccccceEChhhC-C--C-HHHHHHHHHHC--CCEEEEEEcCccCCC
Confidence 5688899999999888876643222111 00011 112332221 1 3 67899999999 99999975531 101
Q ss_pred CccccC---------ccC---------------CCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 261 NPLYVQ---------DKA---------------NNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 261 ~p~y~~---------d~~---------------~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
.+.|.. +.. -+++..+- .+.+..++++.+.+++.|.+|.|++
T Consensus 297 ~~~y~e~~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~a-r~Ww~~~~~~~~~~~Gvdg~w~D~~ 362 (635)
T PRK10426 297 GDLCEEAAEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEA-YEWFKEVIKKNMIGLGCSGWMADFG 362 (635)
T ss_pred CHHHHHHHHCCcEEECCCCCEEEeEecCCCceeecCCCHHH-HHHHHHHHHHHHhhcCCCEEeeeCC
Confidence 111110 000 12222232 3566788888777899999999986
No 78
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=49.25 E-value=49 Score=32.30 Aligned_cols=68 Identities=12% Similarity=0.044 Sum_probs=42.2
Q ss_pred hHHHHHHHHHhhcCCceEEEeeCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCC
Q psy110 233 LVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWE 305 (358)
Q Consensus 233 lV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~ 305 (358)
.++++.+++|++.|+||+.+-...+.+....+..-- .+..- ++.+..++.+++.+|+.|.|=+|..++
T Consensus 52 ~~~~~~~~~k~~~~~lkvlisiGG~~~~s~~fs~~~----~~~~~-R~~fi~siv~~l~~~~fDGidiDWE~P 119 (299)
T cd02879 52 EFSTFTETVKRKNPSVKTLLSIGGGGSDSSAFAAMA----SDPTA-RKAFINSSIKVARKYGFDGLDLDWEFP 119 (299)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCCCCCCchhhHHh----CCHHH-HHHHHHHHHHHHHHhCCCceeecccCC
Confidence 567888888888789998887665443211221100 01111 234467888999999999886664443
No 79
>cd06416 GH25_Lys1-like Lys-1 is a lysozyme encoded by the Caenorhabditis elegans lys-1 gene. This gene is one of a several lysozyme genes upregulated upon infection by the Gram-negative bacterial pathogen Serratia marcescens. Lys-1 contains a glycosyl hydrolase family 25 (GH25) catalytic domain. This family also includes Lys-5 from Caenorhabditis elegans.
Probab=48.85 E-value=36 Score=30.90 Aligned_cols=62 Identities=24% Similarity=0.573 Sum_probs=39.8
Q ss_pred HHHHHHHHHcCCcE--EEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcccccC
Q psy110 187 NHWADILASSGAKY--VVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFN 261 (358)
Q Consensus 187 deWa~lak~AGAKY--vVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~ 261 (358)
+..++.++..|+++ ++|-.+..+ +-|.+. ....++.+.+|+++++++ |.++|+|-+..+|.+
T Consensus 74 ~~f~~~~~~~~~~~~~i~lDiE~~~--~~~~~~---------~~~~~~~~~~f~~~~~~~--G~~~~iYt~~~~w~~ 137 (196)
T cd06416 74 QTFLQYLKANGIKYGTVWIDIEQNP--CQWSSD---------VASNCQFLQELVSAAKAL--GLKVGIYSSQYDWSQ 137 (196)
T ss_pred HHHHHHHHhCCCceeEEEEEEecCC--CCCcCC---------HHHHHHHHHHHHHHHHHh--CCeEEEEcCcchhcc
Confidence 44455556556654 445555432 122221 112458999999999999 999999999877753
No 80
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=46.41 E-value=1.2e+02 Score=30.37 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=57.3
Q ss_pred HHHHHHcCCcEEEEeeeccCCCc--cCCCCCCCCccccCCCC----CCChHHHHHHHHHhh-cCCceEEEeeCcccccCc
Q psy110 190 ADILASSGAKYVVLTSKHHEGYT--LWPSKYAFSWNSMDIGP----KRDLVGELATAIRRK-YSDIHFGLYHSLYEWFNP 262 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFa--LWdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~-~~GLk~GlYyS~~DW~~p 262 (358)
|+.+++||+..|=+-+-| ||- -|=|..+ +-..-..|. +-+++.|+++++|+. |+++.+++=.|..|+...
T Consensus 143 A~~a~~aGfDgVeih~ah--GyLl~qFlsp~~-N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~ 219 (353)
T cd02930 143 AALAREAGYDGVEIMGSE--GYLINQFLAPRT-NKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEG 219 (353)
T ss_pred HHHHHHcCCCEEEEeccc--chHHHHhcCCcc-CCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCC
Confidence 456788999999995555 443 3555544 212222332 458899999999997 234566776776665421
Q ss_pred cccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 263 LYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 263 ~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
. ++..+. -++-+.+.+++.|.|=.-.+|
T Consensus 220 g--------~~~~e~------~~i~~~Le~~G~d~i~vs~g~ 247 (353)
T cd02930 220 G--------STWEEV------VALAKALEAAGADILNTGIGW 247 (353)
T ss_pred C--------CCHHHH------HHHHHHHHHcCCCEEEeCCCc
Confidence 1 111111 244455667888876554444
No 81
>cd06414 GH25_LytC-like The LytC lysozyme of Streptococcus pneumoniae is a bacterial cell wall hydrolase that cleaves the beta1-4-glycosydic bond located between the N-acetylmuramoyl-N-glucosaminyl residues of the cell wall polysaccharide chains. LytC is composed of a C-terminal glycosyl hydrolase family 25 (GH25) domain and an N-terminal choline-binding module (CBM) consisting of eleven homologous repeats that specifically recognizes the choline residues of pneumococcal lipoteichoic and teichoic acids. This domain arrangement is the reverse of the major pneumococcal autolysin, LytA, and the CPL-1-like lytic enzymes of the pneumococcal bacteriophages, in which the CBM (consisting of six repeats) is at the C-terminus. This model represents the C-terminal catalytic domain of the LytC-like enzymes.
Probab=45.99 E-value=30 Score=31.36 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=33.7
Q ss_pred HHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeC
Q psy110 189 WADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS 255 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS 255 (358)
|.. +|++|++++++-+-.-.. .+-+ .-.-..+-.+.||+. ||++|+||=
T Consensus 15 ~~~-~k~~g~~fviiKateG~~----g~~~-----------~D~~~~~~~~~A~~a--Gl~~G~YHf 63 (191)
T cd06414 15 WKK-VKASGVDFAIIRAGYGGY----GELQ-----------EDKYFEENIKGAKAA--GIPVGVYFY 63 (191)
T ss_pred HHH-HHhCCCCEEEEEEecCCC----cccc-----------cCHHHHHHHHHHHHC--CCceEEEEE
Confidence 555 577899999998864321 0001 113456788999999 999999973
No 82
>cd00599 GH25_muramidase Endo-N-acetylmuramidases (muramidases) are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family of muramidases contains a glycosyl hydrolase family 25 (GH25) catalytic domain and is found in bacteria, fungi, slime molds, round worms, protozoans and bacteriophages. The bacteriophage members are referred to as endolysins which are involved in lysing the host cell at the end of the replication cycle to allow release of mature phage particles. Endolysins are typically modular enzymes consisting of a catalytically active domain that hydrolyzes the peptidoglycan cell wall and a cell wall-binding domain that anchors the protein to the cell wall. Endolysins generally have narrow substrate specificities with either intra-species or intra-genus bacteriolytic activity.
Probab=45.91 E-value=24 Score=31.36 Aligned_cols=46 Identities=17% Similarity=0.403 Sum_probs=32.8
Q ss_pred HHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeC
Q psy110 189 WADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS 255 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS 255 (358)
|.+ +|+.|+++|++=+-.-. .+ .-.....-.++||+. ||++|+||=
T Consensus 14 ~~~-~~~~g~~fviik~t~G~-------~~-----------~D~~~~~~~~~a~~a--Gl~~G~Yhy 59 (186)
T cd00599 14 WNA-VKAAGIDFVFIKATEGT-------TY-----------VDPKFATNRARARAA--GLLVGAYHF 59 (186)
T ss_pred HHH-HHhCCCcEEEEEEeCCC-------Cc-----------cChHHHHHHHHHHHC--CCceEEEEE
Confidence 644 46789999999874311 01 124566888999999 999999964
No 83
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=45.78 E-value=1.2e+02 Score=33.47 Aligned_cols=147 Identities=16% Similarity=0.167 Sum_probs=80.5
Q ss_pred HHHHHHHHcCCcEEEEeeeccC---------CC-ccCCCCCCCCccccCCC----CCCChHHHHHHHHHhhcCCceEEE-
Q psy110 188 HWADILASSGAKYVVLTSKHHE---------GY-TLWPSKYAFSWNSMDIG----PKRDLVGELATAIRRKYSDIHFGL- 252 (358)
Q Consensus 188 eWa~lak~AGAKYvVlTaKHHD---------GF-aLWdSk~t~~~ns~~~g----pkRDlV~Ela~A~Rk~~~GLk~Gl- 252 (358)
..++-+|+.|+..|-|+--+.- |. ..|-=... +|.+++.. +..+=+++|+++|+++ ||+|.+
T Consensus 188 ~~LdyLk~LGvtaI~L~Pi~~~~~~~~~~~~~~~~ywGYd~~-~y~a~d~~y~~~g~~~efk~LV~~~H~~--GI~VIlD 264 (688)
T TIGR02100 188 AMIDYLKKLGVTAVELLPVHAFIDDRHLLEKGLRNYWGYNTL-GFFAPEPRYLASGQVAEFKTMVRALHDA--GIEVILD 264 (688)
T ss_pred chhHHHHHcCCCEEEECCcccCCccccccccCCCCccCcCcc-cccccChhhcCCCCHHHHHHHHHHHHHC--CCEEEEE
Confidence 4578899999999988765431 10 01211112 33333321 2346799999999999 999987
Q ss_pred --e-eCccc--------cc---Cccc-cCccC------------CCCC-chHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 253 --Y-HSLYE--------WF---NPLY-VQDKA------------NNFT-TNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 253 --Y-yS~~D--------W~---~p~y-~~d~~------------~~~~-~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
| |...+ |. .+.| ..+.. +.+. ....+.+++..-++-.++.|++|.+=||-..
T Consensus 265 vV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~ 344 (688)
T TIGR02100 265 VVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLAT 344 (688)
T ss_pred ECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechh
Confidence 3 21110 10 0111 10000 0011 1345567888888888999999999999753
Q ss_pred CCCcc---ccChHHHHHHHHhcCCCCCcEEEecccC
Q psy110 305 EAPAE---YWKSREFLAWLYNESPVKNTVVVNDRWC 337 (358)
Q Consensus 305 ~~p~~---~~~~~e~~a~~yn~~~~~~~VvvNdR~g 337 (358)
..... .-...+|++-+.....+.+.++|=--|.
T Consensus 345 ~l~~~~~~~~~~~~~~~~i~~d~~~~~~~ligE~W~ 380 (688)
T TIGR02100 345 TLGRELYGFDMLSGFFTAIRQDPVLAQVKLIAEPWD 380 (688)
T ss_pred hhccccCCCcccHHHHHHHHhCcccCCeEEEEeeec
Confidence 32210 1113567777765422233455555553
No 84
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=45.44 E-value=97 Score=29.89 Aligned_cols=66 Identities=17% Similarity=0.176 Sum_probs=38.6
Q ss_pred HHHHHHHhhcCCceEEEeeCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCCCC
Q psy110 236 ELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEAP 307 (358)
Q Consensus 236 Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~~p 307 (358)
+-+.+.|+++|+||+.+-...+...... ....+-....+.+ -....+.++|.+|+.|.|=+| |+.|
T Consensus 59 ~~~~~lK~~~p~lKvllSiGG~~~~~~~---~~~~~~~~~~~~~-~fv~S~~~~l~~~~fDGiDiD--wE~~ 124 (253)
T cd06544 59 EAVKSIKAQHPNVKVVISIGGRGVQNNP---TPFDPSNVDSWVS-NAVSSLTSIIQTYNLDGIDID--YEHF 124 (253)
T ss_pred HHHHHHHHhCCCcEEEEEeCCCCCCCCc---cccCchhhhhHHH-HHHHHHHHHHHHhCCCceeee--cccC
Confidence 4455777777899999877665542110 0000111223432 335688999999999987444 5544
No 85
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.85 E-value=52 Score=31.71 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=37.5
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
-.+++++.++++|+..+++- | .. - +-..++.++||++ ||+.++-.++
T Consensus 103 G~e~f~~~~~~aGvdgviip----D--------lp----------~-ee~~~~~~~~~~~--gl~~i~lv~P 149 (256)
T TIGR00262 103 GVEEFYAKCKEVGVDGVLVA----D--------LP----------L-EESGDLVEAAKKH--GVKPIFLVAP 149 (256)
T ss_pred hHHHHHHHHHHcCCCEEEEC----C--------CC----------h-HHHHHHHHHHHHC--CCcEEEEECC
Confidence 33999999999999998875 1 11 1 3467999999999 9999987764
No 86
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=44.54 E-value=1.4e+02 Score=26.86 Aligned_cols=32 Identities=19% Similarity=0.328 Sum_probs=21.9
Q ss_pred HHHHHHhcCCCCEEEEeCCCCCCccccChHHHHHHHHh
Q psy110 285 ELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWLYN 322 (358)
Q Consensus 285 Ql~ELi~rY~PDilWfDg~w~~p~~~~~~~e~~a~~yn 322 (358)
.+-+.|...+||+||.-.+ .|. .+.|++.+.+
T Consensus 90 ~i~~~I~~~~pdiv~vglG--~Pk----QE~~~~~~~~ 121 (171)
T cd06533 90 EIIERINASGADILFVGLG--APK----QELWIARHKD 121 (171)
T ss_pred HHHHHHHHcCCCEEEEECC--CCH----HHHHHHHHHH
Confidence 3777888999999999876 331 3445555544
No 87
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=43.92 E-value=36 Score=33.37 Aligned_cols=48 Identities=13% Similarity=0.073 Sum_probs=40.0
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHH
Q psy110 181 AEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIR 242 (358)
Q Consensus 181 p~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~R 242 (358)
.+.++|.+|+..+.+.|++.+++|.-.-|| +..||..++++++++++.
T Consensus 160 ~t~~~~~e~~~~~~~~g~~eii~TdI~rDG--------------tl~G~d~el~~~l~~~~~ 207 (262)
T PLN02446 160 FSDLAVDEETLEFLAAYCDEFLVHGVDVEG--------------KRLGIDEELVALLGEHSP 207 (262)
T ss_pred cCCCCHHHHHHHHHHhCCCEEEEEEEcCCC--------------cccCCCHHHHHHHHhhCC
Confidence 378999999999999999999999998887 235777788888877754
No 88
>PLN02229 alpha-galactosidase
Probab=43.54 E-value=49 Score=34.70 Aligned_cols=52 Identities=21% Similarity=0.284 Sum_probs=33.4
Q ss_pred HHHcCCcEEEEeeeccCCCccCCCCCC---CCc--cccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 193 LASSGAKYVVLTSKHHEGYTLWPSKYA---FSW--NSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 193 ak~AGAKYvVlTaKHHDGFaLWdSk~t---~~~--ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
++++|-+||++=- | |-.+.. .++ |..+ =| +=++.|++.++++ |||||+|-..
T Consensus 94 l~~~Gy~yv~iDD----g---W~~~~rd~~G~l~~d~~r-FP--~G~k~ladyiH~~--GlKfGIy~d~ 150 (427)
T PLN02229 94 LADLGYIHVNIDD----C---WSNLKRDSKGQLVPDPKT-FP--SGIKLLADYVHSK--GLKLGIYSDA 150 (427)
T ss_pred HHhCCCEEEEEcC----C---cCCCCcCCCCCEEEChhh-cC--CcHHHHHHHHHHC--CCceEEeccC
Confidence 5889999999743 2 322111 011 1111 12 2389999999999 9999999764
No 89
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=43.36 E-value=1.1e+02 Score=34.51 Aligned_cols=25 Identities=8% Similarity=-0.020 Sum_probs=19.1
Q ss_pred hhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 280 MKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 280 ~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
+++..+..+.+...++|.+|.|++-
T Consensus 391 ~Ww~~~~~~~l~d~Gv~g~W~D~nE 415 (772)
T COG1501 391 EWWASDKKKNLLDLGVDGFWNDMNE 415 (772)
T ss_pred HHHHHHHHhHHHhcCccEEEccCCC
Confidence 4555467677778899999999973
No 90
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=43.14 E-value=1.2e+02 Score=31.08 Aligned_cols=69 Identities=22% Similarity=0.280 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHH--HHHHHHHhhcCCceEEEeeCccc-ccCc
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVG--ELATAIRRKYSDIHFGLYHSLYE-WFNP 262 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~--Ela~A~Rk~~~GLk~GlYyS~~D-W~~p 262 (358)
-+.-.+.+|.+|..||=|-.--|- +||.-+ .. -|...|+.+ |+++-+++. |||+-+=++--| |-+|
T Consensus 65 ~qD~~~iLK~~GvNyvRlRvwndP----~dsngn----~y-ggGnnD~~k~ieiakRAk~~--GmKVl~dFHYSDfwaDP 133 (403)
T COG3867 65 RQDALQILKNHGVNYVRLRVWNDP----YDSNGN----GY-GGGNNDLKKAIEIAKRAKNL--GMKVLLDFHYSDFWADP 133 (403)
T ss_pred HHHHHHHHHHcCcCeEEEEEecCC----ccCCCC----cc-CCCcchHHHHHHHHHHHHhc--CcEEEeeccchhhccCh
Confidence 355678999999999987644331 233322 11 233678876 566777778 999987433224 5566
Q ss_pred ccc
Q psy110 263 LYV 265 (358)
Q Consensus 263 ~y~ 265 (358)
...
T Consensus 134 akQ 136 (403)
T COG3867 134 AKQ 136 (403)
T ss_pred hhc
Confidence 543
No 91
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=43.12 E-value=1.4e+02 Score=26.73 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCCCEEEEeCCCCCCccccChHHHHHHHHh
Q psy110 283 LPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWLYN 322 (358)
Q Consensus 283 ~~Ql~ELi~rY~PDilWfDg~w~~p~~~~~~~e~~a~~yn 322 (358)
.+.+.+.|.+-+||+||.-.+ .|. .+.|++.+..
T Consensus 90 ~~~i~~~I~~~~pdiv~vglG--~Pk----QE~~~~~~~~ 123 (172)
T PF03808_consen 90 EEAIINRINASGPDIVFVGLG--APK----QERWIARHRQ 123 (172)
T ss_pred HHHHHHHHHHcCCCEEEEECC--CCH----HHHHHHHHHH
Confidence 457777888999999998776 331 3445555543
No 92
>PLN03231 putative alpha-galactosidase; Provisional
Probab=43.02 E-value=18 Score=37.02 Aligned_cols=23 Identities=9% Similarity=0.143 Sum_probs=20.5
Q ss_pred ChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 232 DLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 232 DlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
+=++.|++-++.+ |||||+|-+.
T Consensus 86 ~G~k~lADyvHs~--GLKfGIY~~~ 108 (357)
T PLN03231 86 KGFAPIAAKVHAL--GLKLGIHVMR 108 (357)
T ss_pred cCcHHHHHHHHhC--CcceEEEecC
Confidence 3589999999999 9999999764
No 93
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=42.53 E-value=34 Score=36.98 Aligned_cols=116 Identities=12% Similarity=0.149 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHcCCcEEEE---eeeccCCCccCCCCCCCCccccC-CCCCCChHHHHHHHHHhhcCCceEEEeeCcc---
Q psy110 185 DANHWADILASSGAKYVVL---TSKHHEGYTLWPSKYAFSWNSMD-IGPKRDLVGELATAIRRKYSDIHFGLYHSLY--- 257 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVl---TaKHHDGFaLWdSk~t~~~ns~~-~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~--- 257 (358)
+.++=++.+++-....+-+ -=+||.=++-=.+.....|+-.. +.--.+.|+++++++++. |||..+|-...
T Consensus 119 ~~~~~i~~L~~yHIN~~QFYDW~~rH~~Pl~~~~~~~~~~w~D~~~r~i~~~~Vk~yI~~ah~~--Gmkam~Ynmiyaa~ 196 (559)
T PF13199_consen 119 DIEAEIDQLNRYHINGLQFYDWMYRHHKPLPGTNGQPDQTWTDWANRQISTSTVKDYINAAHKY--GMKAMAYNMIYAAN 196 (559)
T ss_dssp HHHHHHHHHHHTT--EEEETS--SBTTB-S-SSS-EEE-TT-TTT--EEEHHHHHHHHHHHHHT--T-EEEEEEESSEEE
T ss_pred hHHHHHHHHHhhCcCeEEEEeeccccCCcCCCCCCchhhhhhhhcCCEehHHHHHHHHHHHHHc--CcceehhHhhhccc
Confidence 4455566666666666655 34677433222211111343222 112468899999999999 99999985432
Q ss_pred ccc-----Cccc---cCccC---------C---------CCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 258 EWF-----NPLY---VQDKA---------N---------NFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 258 DW~-----~p~y---~~d~~---------~---------~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
+.. +|.| ..+.. . +.....+ .+++.+|+.+.+.+.+.|.+..|--
T Consensus 197 ~~~~~~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~~W-Q~yI~~q~~~~~~~~gFDG~hlDq~ 267 (559)
T PF13199_consen 197 NNYEEDGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNPEW-QNYIINQMNKAIQNFGFDGWHLDQL 267 (559)
T ss_dssp TT--S--SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-HHH-HHHHHHHHHHHHHHHT--EEEEE-S
T ss_pred cCcccccCCchhhhhhccCCCccceeecCcccccceEEecCCCHHH-HHHHHHHHHHHHHccCCceEeeecc
Confidence 211 1111 11111 0 0112333 5788999999999999999999964
No 94
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=42.36 E-value=51 Score=35.14 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=37.7
Q ss_pred HHHHHHHcCCcEEEEeeeccCCCccCCCCCC-CCccccC--CCCCCChHHHHHHHHHhhcCCceEEE
Q psy110 189 WADILASSGAKYVVLTSKHHEGYTLWPSKYA-FSWNSMD--IGPKRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHHDGFaLWdSk~t-~~~ns~~--~gpkRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
-++-+++.|.+-|.|+--+-.+-. ++.|. .++..++ .| ..+-+++|+++|+++ |||+.+
T Consensus 32 ~l~yl~~lG~~~i~l~Pi~~~~~~--~~gY~~~d~~~id~~~G-t~~~~~~lv~~ah~~--gi~vil 93 (543)
T TIGR02403 32 KLDYLKKLGVDYIWLNPFYVSPQK--DNGYDVSDYYAINPLFG-TMADFEELVSEAKKR--NIKIML 93 (543)
T ss_pred hHHHHHHcCCCEEEECCcccCCCC--CCCCCccccCccCcccC-CHHHHHHHHHHHHHC--CCEEEE
Confidence 357889999999999865432110 01111 0222222 22 347799999999999 999987
No 95
>PLN02361 alpha-amylase
Probab=41.92 E-value=2.7e+02 Score=28.84 Aligned_cols=115 Identities=19% Similarity=0.135 Sum_probs=60.2
Q ss_pred HHHHHHHcCCcEEEEeeecc--CCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEE---e-eC-c-----
Q psy110 189 WADILASSGAKYVVLTSKHH--EGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGL---Y-HS-L----- 256 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHH--DGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~Gl---Y-yS-~----- 256 (358)
-++-++++|...|-|+--.. .+.-.++..+- +-+ .+.| ..+=+++|+++|+++ |||+-+ . |. .
T Consensus 34 kl~~l~~lG~t~iwl~P~~~~~~~~GY~~~d~y-~~~-~~~G-t~~el~~li~~~h~~--gi~vi~D~V~NH~~g~~~~~ 108 (401)
T PLN02361 34 KVPDLAKSGFTSAWLPPPSQSLAPEGYLPQNLY-SLN-SAYG-SEHLLKSLLRKMKQY--NVRAMADIVINHRVGTTQGH 108 (401)
T ss_pred HHHHHHHcCCCEEEeCCCCcCCCCCCCCccccc-ccC-cccC-CHHHHHHHHHHHHHc--CCEEEEEEccccccCCCCCC
Confidence 35567778888776664321 11112222221 111 1123 356688999999999 999876 2 21 0
Q ss_pred -----------ccccCccccCc--------cCCCC-------CchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCCCCc
Q psy110 257 -----------YEWFNPLYVQD--------KANNF-------TTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEAPA 308 (358)
Q Consensus 257 -----------~DW~~p~y~~d--------~~~~~-------~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~~p~ 308 (358)
.+|.......+ ....+ ..++.+.+.+..-++-|++.++.|.+=+|....-+.
T Consensus 109 ~~~y~~~~g~~~~wd~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~~ 186 (401)
T PLN02361 109 GGMYNRYDGIPLPWDEHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYSA 186 (401)
T ss_pred CCCcccCCCCcCCCCccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCCH
Confidence 12321110000 00001 123455556565666677789999999997654443
No 96
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=41.62 E-value=30 Score=32.63 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCC-CccccCCCCCCChHHHHHHHHHhhcCCceEEEe
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAF-SWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~-~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY 253 (358)
.++.++++++.|++++++. |+..|...... .|. --.+-++++++.++++ |+++++=
T Consensus 101 ~~~~i~~a~~lG~~~i~~~-----~~~~~~~~~~~~~~~-----~~~~~l~~l~~~A~~~--GV~i~iE 157 (283)
T PRK13209 101 MRKAIQLAQDLGIRVIQLA-----GYDVYYEQANNETRR-----RFIDGLKESVELASRA--SVTLAFE 157 (283)
T ss_pred HHHHHHHHHHcCCCEEEEC-----CccccccccHHHHHH-----HHHHHHHHHHHHHHHh--CCEEEEe
Confidence 4678999999999999873 44333222110 000 0125678999999999 9999884
No 97
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=41.21 E-value=86 Score=29.69 Aligned_cols=60 Identities=8% Similarity=0.110 Sum_probs=37.9
Q ss_pred CCChHHHHHHHHHhhcCCceEEEeeCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCC
Q psy110 230 KRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPE 296 (358)
Q Consensus 230 kRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PD 296 (358)
..+.+-++++.|+++ ||++-.....+....|.|..... .+-..+.+...+++++++|+-.
T Consensus 14 n~~~~D~~~~~a~~~--gi~v~gH~l~W~~~~P~W~~~~~-----~~~~~~~~~~~i~~v~~ry~g~ 73 (254)
T smart00633 14 NFSGADAIVNFAKEN--GIKVRGHTLVWHSQTPDWVFNLS-----KETLLARLENHIKTVVGRYKGK 73 (254)
T ss_pred ChHHHHHHHHHHHHC--CCEEEEEEEeecccCCHhhhcCC-----HHHHHHHHHHHHHHHHHHhCCc
Confidence 346678899999999 99994333333223455543211 1223456778899999999643
No 98
>PRK04161 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=41.12 E-value=60 Score=32.99 Aligned_cols=89 Identities=13% Similarity=0.094 Sum_probs=57.2
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEe---eC-cccccCc
Q psy110 187 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY---HS-LYEWFNP 262 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY---yS-~~DW~~p 262 (358)
+.=++.+|+.||+.+=+..- |+..-...-| ..+...|+.+.+.|+++ ||.|-+= |- ..+..
T Consensus 110 ~ws~~rike~GadavK~Lly-------y~pD~~~ein----~~k~a~vervg~eC~a~--dipf~lE~l~Yd~~~~d~-- 174 (329)
T PRK04161 110 EWSVKRLKEAGADAVKFLLY-------YDVDGDEEIN----DQKQAYIERIGSECTAE--DIPFFLELLTYDERISDN-- 174 (329)
T ss_pred hhhHHHHHHhCCCeEEEEEE-------ECCCCCHHHH----HHHHHHHHHHHHHHHHC--CCCeEEEEeccCCccccc--
Confidence 44477789999999987654 4444331111 13779999999999999 9999872 21 12211
Q ss_pred cccCccCCCCCchHHh---hhhhHHHHHHHHh-cCCCCEEEE
Q psy110 263 LYVQDKANNFTTNQFV---TMKTLPELIEIVQ-KYQPEVIWS 300 (358)
Q Consensus 263 ~y~~d~~~~~~~~~y~---~~~~~~Ql~ELi~-rY~PDilWf 300 (358)
.+.+|. -+.+..-++|+.+ +|++|++=.
T Consensus 175 ----------~~~eyak~kP~~V~~amkefs~~~~gvDVlKv 206 (329)
T PRK04161 175 ----------NSAAYAKLKPHKVNGAMKVFSDKRFGVDVLKV 206 (329)
T ss_pred ----------ccHHHHhhChHHHHHHHHHhccCCCCCcEEEE
Confidence 111221 1356778888887 899998533
No 99
>PTZ00445 p36-lilke protein; Provisional
Probab=40.90 E-value=65 Score=30.97 Aligned_cols=75 Identities=15% Similarity=0.222 Sum_probs=49.2
Q ss_pred hhcCCCCCCCCH----HHHHHHHHHcCCcEEEE------eeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhh
Q psy110 175 FAKDFTAEFFDA----NHWADILASSGAKYVVL------TSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRK 244 (358)
Q Consensus 175 fa~~Fnp~~FDp----deWa~lak~AGAKYvVl------TaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~ 244 (358)
|...|.....++ +..|+++++.|.|-|++ +++|-.|+.-.+.... ..+ +--+.-+++|.+++++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~v~~L~~~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~---~~~--~~~tpefk~~~~~l~~~ 90 (219)
T PTZ00445 16 YIESGLFDHLNPHESADKFVDLLNECGIKVIASDFDLTMITKHSGGYIDPDNDDI---RVL--TSVTPDFKILGKRLKNS 90 (219)
T ss_pred HHHhcccccCCHHHHHHHHHHHHHHcCCeEEEecchhhhhhhhcccccCCCcchh---hhh--ccCCHHHHHHHHHHHHC
Confidence 344544444454 66788999999999985 8899999443331111 111 11234488899999999
Q ss_pred cCCceEEE-eeCc
Q psy110 245 YSDIHFGL-YHSL 256 (358)
Q Consensus 245 ~~GLk~Gl-YyS~ 256 (358)
||++.+ -||.
T Consensus 91 --~I~v~VVTfSd 101 (219)
T PTZ00445 91 --NIKISVVTFSD 101 (219)
T ss_pred --CCeEEEEEccc
Confidence 999877 4663
No 100
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=40.63 E-value=63 Score=34.59 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCcEEEEeeeccC-----CCccCCCCCCCCccccCCCC-CCChHHHHHHHHHhhcCCceEEE
Q psy110 188 HWADILASSGAKYVVLTSKHHE-----GYTLWPSKYAFSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 188 eWa~lak~AGAKYvVlTaKHHD-----GFaLWdSk~t~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
+.++-+++.|++.|.|+--+.. ||. .+ ++..++..- ..+=+++|+++|+++ |||+.+
T Consensus 37 ~~ldyl~~lGv~~i~l~P~~~~~~~~~gY~--~~----d~~~id~~~Gt~~d~~~lv~~~h~~--gi~vil 99 (551)
T PRK10933 37 QRLDYLQKLGVDAIWLTPFYVSPQVDNGYD--VA----NYTAIDPTYGTLDDFDELVAQAKSR--GIRIIL 99 (551)
T ss_pred HhhHHHHhCCCCEEEECCCCCCCCCCCCCC--cc----cCCCcCcccCCHHHHHHHHHHHHHC--CCEEEE
Confidence 5577899999999998764311 221 11 232333211 345689999999999 999987
No 101
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=39.19 E-value=61 Score=34.39 Aligned_cols=61 Identities=10% Similarity=0.034 Sum_probs=39.9
Q ss_pred HHHHHHHHcCCcEEEEeeeccCCCccCCCCCC-CCccccCCCC-CCChHHHHHHHHHhhcCCceEEE
Q psy110 188 HWADILASSGAKYVVLTSKHHEGYTLWPSKYA-FSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 188 eWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t-~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
+-++-+++.|++.|.|+-=+-.+- .+..|. .++..++..- ..+=+++|+++|+++ |||+.+
T Consensus 32 ~~Ldyl~~LGv~~i~L~Pi~~~~~--~~~gY~~~dy~~vd~~~Gt~~df~~Lv~~ah~~--Gi~vil 94 (539)
T TIGR02456 32 SKLDYLKWLGVDALWLLPFFQSPL--RDDGYDVSDYRAILPEFGTIDDFKDFVDEAHAR--GMRVII 94 (539)
T ss_pred HhHHHHHHCCCCEEEECCCcCCCC--CCCCCCcccccccChhhCCHHHHHHHHHHHHHC--CCEEEE
Confidence 447788999999999986643211 011111 1333333221 457799999999999 999987
No 102
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=39.10 E-value=20 Score=33.98 Aligned_cols=56 Identities=16% Similarity=0.137 Sum_probs=37.3
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEe
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY 253 (358)
-...++++++.|++++++..-+..+ .+.-. .|. --.+.++++++.++++ |+++++=
T Consensus 87 ~~~~i~~A~~lG~~~v~~~~g~~~~----~~~~~-~~~-----~~~~~l~~l~~~a~~~--gi~l~lE 142 (279)
T cd00019 87 LKDEIERCEELGIRLLVFHPGSYLG----QSKEE-GLK-----RVIEALNELIDKAETK--GVVIALE 142 (279)
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCC----CCHHH-HHH-----HHHHHHHHHHHhccCC--CCEEEEe
Confidence 3789999999999999884433211 00000 011 0247888999999999 9999883
No 103
>PRK12928 lipoyl synthase; Provisional
Probab=38.72 E-value=83 Score=30.98 Aligned_cols=57 Identities=23% Similarity=0.285 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHH---HHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEE
Q psy110 181 AEFFDANHWADI---LASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 181 p~~FDpdeWa~l---ak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
+...++++-++. +++.|.|++++|+-++|-. . + + +.+-+.++++++|+..|++++.+
T Consensus 84 ~~~~~~eei~~~a~~~~~~G~keivitg~~~dDl-------~-d------~-g~~~~~ell~~Ik~~~p~~~I~~ 143 (290)
T PRK12928 84 PMPLDPDEPERVAEAVAALGLRYVVLTSVARDDL-------P-D------G-GAAHFVATIAAIRARNPGTGIEV 143 (290)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcc-------c-c------c-CHHHHHHHHHHHHhcCCCCEEEE
Confidence 334677766554 4578999999999887511 1 0 1 23467888888888766777765
No 104
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=38.25 E-value=36 Score=32.33 Aligned_cols=34 Identities=9% Similarity=0.099 Sum_probs=30.1
Q ss_pred cCCCCCCCCHHHHHHHHHHcCCcEEEEeeeccCC
Q psy110 177 KDFTAEFFDANHWADILASSGAKYVVLTSKHHEG 210 (358)
Q Consensus 177 ~~Fnp~~FDpdeWa~lak~AGAKYvVlTaKHHDG 210 (358)
..|..+..++.+|++.+++.|++.+++|.-..||
T Consensus 139 ~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dG 172 (232)
T PRK13586 139 RGWKEKSMEVIDGIKKVNELELLGIIFTYISNEG 172 (232)
T ss_pred cCCeeCCCCHHHHHHHHHhcCCCEEEEecccccc
Confidence 3455567899999999999999999999999988
No 105
>PF10673 DUF2487: Protein of unknown function (DUF2487); InterPro: IPR019615 This entry represents proteins with unknown function that appears to be restricted to Bacillus sp.
Probab=37.72 E-value=34 Score=30.69 Aligned_cols=23 Identities=35% Similarity=0.549 Sum_probs=21.0
Q ss_pred HHHHHHHHHcCCcEEEEeeeccC
Q psy110 187 NHWADILASSGAKYVVLTSKHHE 209 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHD 209 (358)
.+|.+.+|+.|+|+|++.|-.++
T Consensus 74 ~~w~~~l~~~GFkhV~~lT~D~~ 96 (142)
T PF10673_consen 74 NDWCEELKESGFKHVFYLTSDSE 96 (142)
T ss_pred HHHHHHHHhcCCcEEEEEecCcc
Confidence 78999999999999999998765
No 106
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=37.48 E-value=1.2e+02 Score=30.50 Aligned_cols=129 Identities=9% Similarity=0.042 Sum_probs=74.2
Q ss_pred HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCC----CCChHHHHHHHHHhhcCCceEEEeeCcccccCcccc
Q psy110 190 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYV 265 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~ 265 (358)
|+.+++||+..|=+-+-|.--++-|=|..+ +..+-..|. +-.++.|+++++|+.- +..+++=.|..|+...
T Consensus 148 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~-N~RtD~yGGslenR~Rf~~eii~~ir~~~-~~~v~vRis~~d~~~~--- 222 (337)
T PRK13523 148 AVRAKEAGFDVIEIHGAHGYLINEFLSPLS-NKRTDEYGGSPENRYRFLREIIDAVKEVW-DGPLFVRISASDYHPG--- 222 (337)
T ss_pred HHHHHHcCCCEEEEccccchHHHHhcCCcc-CCcCCCCCCCHHHHHHHHHHHHHHHHHhc-CCCeEEEecccccCCC---
Confidence 567788999999999988544444666655 333333443 3488999999999983 5677887777665321
Q ss_pred CccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC-CCCcccc-C--hHHHHHHHHhcCCCCCcEEEeccc
Q psy110 266 QDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW-EAPAEYW-K--SREFLAWLYNESPVKNTVVVNDRW 336 (358)
Q Consensus 266 ~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w-~~p~~~~-~--~~e~~a~~yn~~~~~~~VvvNdR~ 336 (358)
..+.++. -++-+.+.+.+.|+|=..++- ..+.... . ..++.+.++.. +.--|++|.|.
T Consensus 223 -----G~~~~e~------~~i~~~l~~~gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~--~~ipVi~~G~i 284 (337)
T PRK13523 223 -----GLTVQDY------VQYAKWMKEQGVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREH--ANIATGAVGLI 284 (337)
T ss_pred -----CCCHHHH------HHHHHHHHHcCCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhh--cCCcEEEeCCC
Confidence 1111222 134444556788887665542 1111000 0 12455556543 22246777765
No 107
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=37.23 E-value=54 Score=27.63 Aligned_cols=37 Identities=30% Similarity=0.224 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceE
Q psy110 187 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHF 250 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~ 250 (358)
.++++.+.+.|+|.+++.+- ..-.|+.+.||++ ||++
T Consensus 69 ~~~v~~~~~~g~~~v~~~~g-------------------------~~~~~~~~~a~~~--gi~v 105 (116)
T PF13380_consen 69 PEIVDEAAALGVKAVWLQPG-------------------------AESEELIEAAREA--GIRV 105 (116)
T ss_dssp HHHHHHHHHHT-SEEEE-TT-------------------------S--HHHHHHHHHT--T-EE
T ss_pred HHHHHHHHHcCCCEEEEEcc-------------------------hHHHHHHHHHHHc--CCEE
Confidence 67888888889999999766 2335999999999 9996
No 108
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=37.19 E-value=31 Score=32.40 Aligned_cols=57 Identities=18% Similarity=0.276 Sum_probs=38.2
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEe
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY 253 (358)
-++++++++..||+.+++..-|. |+. ......|. --.+-++++++-|+++ ||++++=
T Consensus 92 ~~~~i~~a~~lGa~~i~~~~~~~-~~~---~~~~~~~~-----~~~~~l~~l~~~a~~~--gv~l~iE 148 (275)
T PRK09856 92 IKLAMDMAKEMNAGYTLISAAHA-GYL---TPPNVIWG-----RLAENLSELCEYAENI--GMDLILE 148 (275)
T ss_pred HHHHHHHHHHhCCCEEEEcCCCC-CCC---CCHHHHHH-----HHHHHHHHHHHHHHHc--CCEEEEe
Confidence 36889999999999998855432 221 10000111 0236789999999999 9999874
No 109
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=37.03 E-value=60 Score=31.60 Aligned_cols=48 Identities=29% Similarity=0.355 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHh
Q psy110 182 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRR 243 (358)
Q Consensus 182 ~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk 243 (358)
+.+++.+.++.+.+.|++.+++|.=+-||-+ .||+.|+++|++++.+-
T Consensus 145 s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl--------------~G~n~~l~~~l~~~~~i 192 (241)
T COG0106 145 SGVELEELAKRLEEVGLAHILYTDISRDGTL--------------SGPNVDLVKELAEAVDI 192 (241)
T ss_pred ccCCHHHHHHHHHhcCCCeEEEEeccccccc--------------CCCCHHHHHHHHHHhCc
Confidence 6799999999999999999999999888732 58899999999999843
No 110
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.03 E-value=70 Score=32.54 Aligned_cols=134 Identities=13% Similarity=0.074 Sum_probs=74.3
Q ss_pred HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCC----CCChHHHHHHHHHhh-cCCceEEEeeCcccccCccc
Q psy110 190 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVGELATAIRRK-YSDIHFGLYHSLYEWFNPLY 264 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~-~~GLk~GlYyS~~DW~~p~y 264 (358)
|+.+++||+..|=+-+-|.--++-|=|..+ +-..-..|. +..++.|+++|+|+. |+++.+|+=.|.++ ..++
T Consensus 150 A~~a~~aGfDgVeih~ahGyLl~qFLSp~~-N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~--~~~~ 226 (361)
T cd04747 150 AADARRLGFDGIELHGAHGYLIDQFFWAGT-NRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWK--QQDY 226 (361)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECccc--cccc
Confidence 567888999999999988655555666665 322233443 458999999999997 34578888777532 1111
Q ss_pred cCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC-CCCCccccChHHHHHHHHhcCCCCCcEEEeccc
Q psy110 265 VQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE-WEAPAEYWKSREFLAWLYNESPVKNTVVVNDRW 336 (358)
Q Consensus 265 ~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~-w~~p~~~~~~~e~~a~~yn~~~~~~~VvvNdR~ 336 (358)
... ...+..+ .-++-.++.+.+.|+|=.-++ +..+........+.+.++... .--|+++.+.
T Consensus 227 ~~~--~g~~~~e------~~~~~~~l~~~gvd~i~vs~g~~~~~~~~~~~~~~~~~~k~~~--~~pv~~~G~i 289 (361)
T cd04747 227 TAR--LADTPDE------LEALLAPLVDAGVDIFHCSTRRFWEPEFEGSELNLAGWTKKLT--GLPTITVGSV 289 (361)
T ss_pred ccC--CCCCHHH------HHHHHHHHHHcCCCEEEecCCCccCCCcCccchhHHHHHHHHc--CCCEEEECCc
Confidence 110 0011111 123444456778888644332 212211111234555555432 2247888876
No 111
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=35.92 E-value=1.2e+02 Score=33.71 Aligned_cols=97 Identities=15% Similarity=0.151 Sum_probs=60.3
Q ss_pred HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCC----CCChHHHHHHHHHhhc-CCceEEEeeCcccccCccc
Q psy110 190 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVGELATAIRRKY-SDIHFGLYHSLYEWFNPLY 264 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~~-~GLk~GlYyS~~DW~~p~y 264 (358)
|+.+++||+..|=+-+-|---++-|=|..+ +-..-..|. .-.++.|+++++|+.- +++.+|+=.|..||....
T Consensus 557 A~~a~~aGfDgveih~ahGyLl~qFlsp~~-N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g- 634 (765)
T PRK08255 557 ARRAAEAGFDWLELHCAHGYLLSSFISPLT-NQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGG- 634 (765)
T ss_pred HHHHHHcCCCEEEEecccchHHHHhcCCCC-CCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCC-
Confidence 345677999999998887433344556655 222233343 3588999999999972 257788888887775321
Q ss_pred cCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEe
Q psy110 265 VQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSD 301 (358)
Q Consensus 265 ~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfD 301 (358)
++.++. -++-+++.+.+.|+|=.-
T Consensus 635 -------~~~~~~------~~~~~~l~~~g~d~i~vs 658 (765)
T PRK08255 635 -------NTPDDA------VEIARAFKAAGADLIDVS 658 (765)
T ss_pred -------CCHHHH------HHHHHHHHhcCCcEEEeC
Confidence 111121 144455567778876444
No 112
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=35.90 E-value=1.7e+02 Score=28.97 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=43.9
Q ss_pred HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCC----CCChHHHHHHHHHhh-cCCceEEEeeCccccc
Q psy110 190 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVGELATAIRRK-YSDIHFGLYHSLYEWF 260 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~-~~GLk~GlYyS~~DW~ 260 (358)
|+.+++||+..|=+-+-|---.+-|=|..+ +-..-..|. +.+++.|+++++|+. |+++.+++=.|..++.
T Consensus 160 A~~a~~aGfDgVei~~~~gyLl~qFlsp~~-N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~ 234 (336)
T cd02932 160 ARRAVEAGFDVIEIHAAHGYLLHQFLSPLS-NKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWV 234 (336)
T ss_pred HHHHHHcCCCEEEEccccccHHHHhcCCcc-CCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccC
Confidence 566788999999887766433334555544 222222232 457889999999987 2346677767765543
No 113
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=34.11 E-value=6.6e+02 Score=28.04 Aligned_cols=109 Identities=13% Similarity=0.104 Sum_probs=69.1
Q ss_pred HHHHHHHHHcCCcEEEEeee-ccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHH-hhcCCceEEEeeCccccc----
Q psy110 187 NHWADILASSGAKYVVLTSK-HHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIR-RKYSDIHFGLYHSLYEWF---- 260 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaK-HHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~R-k~~~GLk~GlYyS~~DW~---- 260 (358)
++.++.+|+.|..-|+|-+= -.||=.+|+|.|- +|.. ..-+.|+...++=.++ ++ |+||-+-.-.+-+.
T Consensus 337 ~~lLdrlk~~G~ntV~lqafadp~gd~~~~s~yf-P~~~--lp~r~d~f~~~aw~l~~r~--~v~v~AWmp~~~~~~~~~ 411 (671)
T PRK14582 337 DVLIQRVKDMQISTVYLQAFADPDGDGLVKELYF-PNRL--LPMRADLFNRVAWQLRTRA--GVNVYAWMPVLSFDLDPT 411 (671)
T ss_pred HHHHHHHHHcCCCEEEEEeccCCCCCcccccccc-Cccc--cccccCCcCHHHHHHHHhh--CCEEEEeccceeeccCCC
Confidence 46888999999999999992 2457789999987 6632 2226677777655555 55 89986643322111
Q ss_pred ----------------CccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 261 ----------------NPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 261 ----------------~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
+|++ ..+.+++ .+=+.+.+..-..||..+|..|.|=||-.
T Consensus 412 ~~~~~~~~~~~~~~~~~~~~-~~rl~P~--~pe~r~~i~~i~~dla~~~~~dGilf~Dd 467 (671)
T PRK14582 412 LPRVKRLDTGEGKAQIHPEQ-YRRLSPF--DDRVRAQVGMLYEDLAGHAAFDGILFHDD 467 (671)
T ss_pred cchhhhccccCCccccCCCC-CcCCCCC--CHHHHHHHHHHHHHHHHhCCCceEEeccc
Confidence 1111 0111222 12234566667788999999998777765
No 114
>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional
Probab=33.87 E-value=71 Score=29.24 Aligned_cols=45 Identities=11% Similarity=0.041 Sum_probs=33.6
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEee
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYH 254 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYy 254 (358)
++..++.+.++||.++.+-+... .+-+.++.++||+. |+++|+-.
T Consensus 69 ~~~~~~~~~~~gad~vtvh~e~g----------------------~~~l~~~i~~~~~~--g~~~~v~~ 113 (215)
T PRK13813 69 NRLICEAVFEAGAWGIIVHGFTG----------------------RDSLKAVVEAAAES--GGKVFVVV 113 (215)
T ss_pred HHHHHHHHHhCCCCEEEEcCcCC----------------------HHHHHHHHHHHHhc--CCeEEEEE
Confidence 45566888899999877644311 23578899999999 99999854
No 115
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=33.87 E-value=61 Score=27.99 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcc
Q psy110 178 DFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLY 257 (358)
Q Consensus 178 ~Fnp~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~ 257 (358)
.+..+-+|++.+.++++ |+..++.+.-+... ..|.++.+.+||++. |++--+|.|..
T Consensus 43 ~~~~d~~d~~~~~~al~--~~d~vi~~~~~~~~-------------------~~~~~~~~~~a~~~~--~~~~~v~~s~~ 99 (183)
T PF13460_consen 43 IIQGDLFDPDSVKAALK--GADAVIHAAGPPPK-------------------DVDAAKNIIEAAKKA--GVKRVVYLSSA 99 (183)
T ss_dssp EEESCTTCHHHHHHHHT--TSSEEEECCHSTTT-------------------HHHHHHHHHHHHHHT--TSSEEEEEEET
T ss_pred cceeeehhhhhhhhhhh--hcchhhhhhhhhcc-------------------ccccccccccccccc--ccccceeeecc
Confidence 34456799999999988 89999988843322 168999999999999 99888887753
No 116
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=33.63 E-value=26 Score=30.54 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=57.9
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcccccCcccc
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYV 265 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~ 265 (358)
-++.++++++.|++++++-.-. |+........ ....--.+-++++++.|+++ |+++.+...........
T Consensus 73 ~~~~i~~a~~lg~~~i~~~~g~------~~~~~~~~~~-~~~~~~~~~l~~l~~~a~~~--gv~i~lE~~~~~~~~~~-- 141 (213)
T PF01261_consen 73 LKKAIDLAKRLGAKYIVVHSGR------YPSGPEDDTE-ENWERLAENLRELAEIAEEY--GVRIALENHPGPFSETP-- 141 (213)
T ss_dssp HHHHHHHHHHHTBSEEEEECTT------ESSSTTSSHH-HHHHHHHHHHHHHHHHHHHH--TSEEEEE-SSSSSSSEE--
T ss_pred HHHHHHHHHHhCCCceeecCcc------cccccCCCHH-HHHHHHHHHHHHHHhhhhhh--cceEEEecccCccccch--
Confidence 4789999999999999987442 1111110000 00000246788999999999 99999986543221100
Q ss_pred CccCCCCCchHHhhhhhHHHHHHHHhcCCC-CE-EEEeCC
Q psy110 266 QDKANNFTTNQFVTMKTLPELIEIVQKYQP-EV-IWSDGE 303 (358)
Q Consensus 266 ~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~P-Di-lWfDg~ 303 (358)
....++.+|+.+.+. .+ |.+|.+
T Consensus 142 ---------------~~~~~~~~~l~~~~~~~~~i~~D~~ 166 (213)
T PF01261_consen 142 ---------------FSVEEIYRLLEEVDSPNVGICFDTG 166 (213)
T ss_dssp ---------------SSHHHHHHHHHHHTTTTEEEEEEHH
T ss_pred ---------------hhHHHHHHHHhhcCCCcceEEEehH
Confidence 114688889999974 34 889976
No 117
>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]
Probab=33.46 E-value=57 Score=31.93 Aligned_cols=30 Identities=33% Similarity=0.469 Sum_probs=28.2
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeeeccCCC
Q psy110 182 EFFDANHWADILASSGAKYVVLTSKHHEGY 211 (358)
Q Consensus 182 ~~FDpdeWa~lak~AGAKYvVlTaKHHDGF 211 (358)
+.+|+=+|++..++.||--++||+--.||-
T Consensus 153 t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGt 182 (256)
T COG0107 153 TGLDAVEWAKEVEELGAGEILLTSMDRDGT 182 (256)
T ss_pred CCcCHHHHHHHHHHcCCceEEEeeeccccc
Confidence 789999999999999999999999999874
No 118
>PF07338 DUF1471: Protein of unknown function (DUF1471); InterPro: IPR010854 This entry consists of several hypothetical Enterobacterial proteins of around 90 residues in length. Some of the proteins are annotated as ydgH precursors and contain two copies of this region, one at the N terminus and the other at the C terminus. The function of this family is unknown.; PDB: 2NOC_A 2JNA_B 4EVU_B.
Probab=33.24 E-value=59 Score=24.36 Aligned_cols=22 Identities=32% Similarity=0.353 Sum_probs=18.6
Q ss_pred HHHHHHHHHcCCcEEEEeeecc
Q psy110 187 NHWADILASSGAKYVVLTSKHH 208 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHH 208 (358)
++.++.+.+.||+|..+|.-+-
T Consensus 22 ~~la~kAd~~GA~~y~I~~~~~ 43 (56)
T PF07338_consen 22 EALAKKADEKGAKYYRITSASE 43 (56)
T ss_dssp HHHHHHHHHTT-SEEEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEEEEc
Confidence 6788999999999999998876
No 119
>PTZ00445 p36-lilke protein; Provisional
Probab=33.02 E-value=2.5e+02 Score=27.10 Aligned_cols=98 Identities=18% Similarity=0.200 Sum_probs=51.6
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceE---EEe-eCcccccCc
Q psy110 187 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHF---GLY-HSLYEWFNP 262 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~---GlY-yS~~DW~~p 262 (358)
.+|.+.++++|.+-+|+|=- .+.. +.. ...|..=.=.||+++|=|+. +-.+ .+| |-+..|..|
T Consensus 81 k~~~~~l~~~~I~v~VVTfS---------d~~~--~~~-~~~~~~Isg~~li~~~lk~s-~~~~~i~~~~~yyp~~w~~p 147 (219)
T PTZ00445 81 KILGKRLKNSNIKISVVTFS---------DKEL--IPS-ENRPRYISGDRMVEAALKKS-KCDFKIKKVYAYYPKFWQEP 147 (219)
T ss_pred HHHHHHHHHCCCeEEEEEcc---------chhh--ccc-cCCcceechHHHHHHHHHhc-CccceeeeeeeeCCcccCCh
Confidence 67999999999999998832 1211 011 11111111135777776641 2222 223 444567666
Q ss_pred c-ccCcc-CCCCCchHHhhhhhHHHHHHHHhcCCC---CEEEEeCC
Q psy110 263 L-YVQDK-ANNFTTNQFVTMKTLPELIEIVQKYQP---EVIWSDGE 303 (358)
Q Consensus 263 ~-y~~d~-~~~~~~~~y~~~~~~~Ql~ELi~rY~P---DilWfDg~ 303 (358)
. |..-. ..|... .+.| ++++|+++++. ++|++|-.
T Consensus 148 ~~y~~~gl~KPdp~---iK~y---Hle~ll~~~gl~peE~LFIDD~ 187 (219)
T PTZ00445 148 SDYRPLGLDAPMPL---DKSY---HLKQVCSDFNVNPDEILFIDDD 187 (219)
T ss_pred hhhhhhcccCCCcc---chHH---HHHHHHHHcCCCHHHeEeecCC
Confidence 3 33211 111110 1111 67889999975 47999965
No 120
>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase. This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.
Probab=32.50 E-value=60 Score=31.06 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=39.0
Q ss_pred CCCCCCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHH
Q psy110 178 DFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAI 241 (358)
Q Consensus 178 ~Fnp~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~ 241 (358)
-|+.+..++.+|++.+.+.|++.+++|.-..||- ..||..++++++.+.+
T Consensus 143 Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt--------------~~G~d~~l~~~l~~~~ 192 (243)
T TIGR01919 143 GWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGL--------------SGGPNELLLEVVAART 192 (243)
T ss_pred CeecCCCcHHHHHHHHHhCCCCEEEEEecCCccc--------------CCCcCHHHHHHHHhhC
Confidence 4555789999999999999999999999988873 2466666666665543
No 121
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=32.35 E-value=54 Score=31.37 Aligned_cols=47 Identities=19% Similarity=0.122 Sum_probs=37.7
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHH
Q psy110 181 AEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAI 241 (358)
Q Consensus 181 p~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~ 241 (358)
.+.++|.+|++.+.+.|++.+++|.-..||- ..||..++++++.+++
T Consensus 141 ~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt--------------~~G~d~el~~~l~~~~ 187 (241)
T PRK14114 141 EEEIDPVSLLKRLKEYGLEEIVHTEIEKDGT--------------LQEHDFSLTRKIAIEA 187 (241)
T ss_pred cCCCCHHHHHHHHHhcCCCEEEEEeechhhc--------------CCCcCHHHHHHHHHHC
Confidence 4789999999999999999999999888762 3466667776665553
No 122
>PRK05481 lipoyl synthase; Provisional
Probab=32.05 E-value=1.1e+02 Score=29.88 Aligned_cols=58 Identities=22% Similarity=0.252 Sum_probs=39.1
Q ss_pred CCCHHHHH---HHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeC
Q psy110 183 FFDANHWA---DILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS 255 (358)
Q Consensus 183 ~FDpdeWa---~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS 255 (358)
..++++.+ +.+++.|+|.++||+-+++ | +. + .+.+-+.++.+++++..|++++.+..+
T Consensus 79 s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~-----d--~~-~-------~~~~~l~~Ll~~I~~~~p~irI~~l~~ 139 (289)
T PRK05481 79 PLDPDEPERVAEAVARMGLKYVVITSVDRD-----D--LP-D-------GGAQHFAETIRAIRELNPGTTIEVLIP 139 (289)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEEEeeCC-----C--cc-c-------ccHHHHHHHHHHHHhhCCCcEEEEEcc
Confidence 36666654 4556899999999999986 1 10 0 022457788888888655788766554
No 123
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=31.06 E-value=1.8e+02 Score=28.80 Aligned_cols=62 Identities=18% Similarity=0.271 Sum_probs=39.2
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeC
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS 255 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS 255 (358)
+.+++++.|++.|..|+++ -+|...|-.+.+ ++....- ...=|.||++=+|++ |+++-+++.
T Consensus 33 ~~k~yIDfAa~~G~eYvlv----D~GW~~~~~~~~--~d~~~~~-~~~dl~elv~Ya~~K--gVgi~lw~~ 94 (273)
T PF10566_consen 33 TQKRYIDFAAEMGIEYVLV----DAGWYGWEKDDD--FDFTKPI-PDFDLPELVDYAKEK--GVGIWLWYH 94 (273)
T ss_dssp HHHHHHHHHHHTT-SEEEE----BTTCCGS--TTT----TT-B--TT--HHHHHHHHHHT--T-EEEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEe----cccccccccccc--ccccccC-CccCHHHHHHHHHHc--CCCEEEEEe
Confidence 4578999999999999999 446554332222 2233333 346689999999999 999988654
No 124
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=30.91 E-value=1e+02 Score=27.53 Aligned_cols=41 Identities=15% Similarity=0.133 Sum_probs=31.5
Q ss_pred HHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEE
Q psy110 188 HWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 188 eWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
..++.+.++||+++++-+. + + . +-+.+++++||++ |+++|+
T Consensus 68 ~~~~~~~~aGad~i~~h~~------------~--------~-~-~~~~~~i~~~~~~--g~~~~v 108 (202)
T cd04726 68 LEAEMAFKAGADIVTVLGA------------A--------P-L-STIKKAVKAAKKY--GKEVQV 108 (202)
T ss_pred HHHHHHHhcCCCEEEEEee------------C--------C-H-HHHHHHHHHHHHc--CCeEEE
Confidence 4579999999999886422 1 1 1 3467899999999 999997
No 125
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=30.54 E-value=1e+02 Score=29.96 Aligned_cols=49 Identities=20% Similarity=0.319 Sum_probs=36.0
Q ss_pred CCCHHHHHHHH---HHcCCcEEEEeeeccCC-CccCCCCCCCCccccCCCCCCChHHHHHHH
Q psy110 183 FFDANHWADIL---ASSGAKYVVLTSKHHEG-YTLWPSKYAFSWNSMDIGPKRDLVGELATA 240 (358)
Q Consensus 183 ~FDpdeWa~la---k~AGAKYvVlTaKHHDG-FaLWdSk~t~~~ns~~~gpkRDlV~Ela~A 240 (358)
..+|++|++.+ -+|||.+|++=++--.. --+++..-+ .+.|+|.++++.
T Consensus 130 ~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~~~g~---------~r~d~v~~i~~~ 182 (237)
T TIGR03849 130 ELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFDEKGN---------VKEDELDVLAEN 182 (237)
T ss_pred cCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeCCCCC---------CchHHHHHHHhh
Confidence 58999999999 89999999999864421 334444422 256899998884
No 126
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=30.38 E-value=66 Score=32.64 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=24.8
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEeeeccCCCc
Q psy110 181 AEFFDANHWADILASSGAKYVVLTSKHHEGYT 212 (358)
Q Consensus 181 p~~FDpdeWa~lak~AGAKYvVlTaKHHDGFa 212 (358)
....+|++.+++++++++|.+|++ |+|-|.
T Consensus 258 ~~hm~p~ea~~~a~~l~ak~vIpi--H~dtf~ 287 (355)
T PRK11709 258 TDKMTSIDILRMAESLNAKVVIPV--HHDIWS 287 (355)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEE--Chhhcc
Confidence 357999999999999999988886 666443
No 127
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=30.22 E-value=66 Score=31.90 Aligned_cols=68 Identities=18% Similarity=0.180 Sum_probs=46.5
Q ss_pred HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCC----CCChHHHHHHHHHhhc-CCceEEEeeCccc
Q psy110 190 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVGELATAIRRKY-SDIHFGLYHSLYE 258 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~~-~GLk~GlYyS~~D 258 (358)
|+.+++||+..|=|-+-|.--..-|-|..+ +...-..|. +..++.|.++++|+.- +++.+++=.|..|
T Consensus 155 A~ra~~aGfDgVeih~a~gyLl~qFlsp~~-N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~ 227 (338)
T cd04733 155 ARLAQEAGFDGVQIHAAHGYLLSQFLSPLT-NKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSAD 227 (338)
T ss_pred HHHHHHcCCCEEEEchhhhhHHHHhcCCcC-CCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHH
Confidence 456788999999998888444445777776 322233343 4588999999999872 2477887777544
No 128
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=30.18 E-value=2.4e+02 Score=26.18 Aligned_cols=73 Identities=14% Similarity=-0.006 Sum_probs=43.3
Q ss_pred CChHHHHHHHHHhhcCCceEEEeeCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEE-eCCCCCCcc
Q psy110 231 RDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWS-DGEWEAPAE 309 (358)
Q Consensus 231 RDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWf-Dg~w~~p~~ 309 (358)
.|.+.+.++.+|+. |+.+.++.+...- + ..+.++ ..++.+.+.++++|.|-+ |......++
T Consensus 114 ~~~~~~~i~~a~~~--G~~v~~~~~~~~~--~---------~~~~~~-----l~~~~~~~~~~g~~~i~l~Dt~G~~~P~ 175 (265)
T cd03174 114 LENAEEAIEAAKEA--GLEVEGSLEDAFG--C---------KTDPEY-----VLEVAKALEEAGADEISLKDTVGLATPE 175 (265)
T ss_pred HHHHHHHHHHHHHC--CCeEEEEEEeecC--C---------CCCHHH-----HHHHHHHHHHcCCCEEEechhcCCcCHH
Confidence 46688889999999 9998887643211 1 001122 235555666788887644 554333222
Q ss_pred ccChHHHHHHHHhc
Q psy110 310 YWKSREFLAWLYNE 323 (358)
Q Consensus 310 ~~~~~e~~a~~yn~ 323 (358)
+..+++..++..
T Consensus 176 --~v~~li~~l~~~ 187 (265)
T cd03174 176 --EVAELVKALREA 187 (265)
T ss_pred --HHHHHHHHHHHh
Confidence 346677777654
No 129
>PLN02334 ribulose-phosphate 3-epimerase
Probab=29.49 E-value=1.4e+02 Score=27.90 Aligned_cols=48 Identities=15% Similarity=0.235 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeC
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHS 255 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS 255 (358)
||+.+++++.++||.++.+-..- . ..|.+.+.++.+++. |+++|+..+
T Consensus 76 ~p~d~~~~~~~~gad~v~vH~~q-----------~----------~~d~~~~~~~~i~~~--g~~iGls~~ 123 (229)
T PLN02334 76 NPEDYVPDFAKAGASIFTFHIEQ-----------A----------STIHLHRLIQQIKSA--GMKAGVVLN 123 (229)
T ss_pred CHHHHHHHHHHcCCCEEEEeecc-----------c----------cchhHHHHHHHHHHC--CCeEEEEEC
Confidence 79999999999999988653320 0 125567888999999 999999764
No 130
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=28.86 E-value=2.9e+02 Score=28.29 Aligned_cols=97 Identities=19% Similarity=0.226 Sum_probs=63.3
Q ss_pred HHHHHHcCCcEEEEeeeccCCCcc--CCCCCCCCccccCCCC----CCChHHHHHHHHHhhcCCce--EEEeeCcccccC
Q psy110 190 ADILASSGAKYVVLTSKHHEGYTL--WPSKYAFSWNSMDIGP----KRDLVGELATAIRRKYSDIH--FGLYHSLYEWFN 261 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFaL--WdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~~~GLk--~GlYyS~~DW~~ 261 (358)
++.+++||+..|=+-+-|. |-| |=|..+ +-..-..|. +-=++.|+++|+|+.= |-. +|+=.|..||..
T Consensus 155 A~rA~~AGFDgVEIH~AhG--YLi~qFlsp~t-N~RtD~YGGSlENR~Rf~~EVv~aVr~~v-g~~~~vg~Rls~~d~~~ 230 (363)
T COG1902 155 ARRAKEAGFDGVEIHGAHG--YLLSQFLSPLT-NKRTDEYGGSLENRARFLLEVVDAVREAV-GADFPVGVRLSPDDFFD 230 (363)
T ss_pred HHHHHHcCCCEEEEeeccc--hHHHHhcCCcc-CCCCCccCCcHHHHHHHHHHHHHHHHHHh-CCCceEEEEECccccCC
Confidence 5678899999999999885 543 445544 222223343 3478999999999984 453 677789988822
Q ss_pred ccccCccCCCCCchHHhhhhhHHHHHHHHhcCC-CCEEEEeCC
Q psy110 262 PLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQ-PEVIWSDGE 303 (358)
Q Consensus 262 p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~-PDilWfDg~ 303 (358)
.. .++.+++ -++-+.|.+.+ .|+|..-++
T Consensus 231 ~~-------g~~~~e~------~~la~~L~~~G~~d~i~vs~~ 260 (363)
T COG1902 231 GG-------GLTIEEA------VELAKALEEAGLVDYIHVSEG 260 (363)
T ss_pred CC-------CCCHHHH------HHHHHHHHhcCCccEEEeecc
Confidence 11 1111222 35666777888 699887765
No 131
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=28.62 E-value=81 Score=23.39 Aligned_cols=44 Identities=14% Similarity=0.092 Sum_probs=33.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceE
Q psy110 183 FFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHF 250 (358)
Q Consensus 183 ~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~ 250 (358)
...|++.++.+++.|++.+.+|=.- + + .-+-++.+.+++. ||++
T Consensus 14 ~~~~~~~~~~a~~~g~~~v~iTDh~-----------~-----~------~~~~~~~~~~~~~--gi~~ 57 (67)
T smart00481 14 ALSPEELVKRAKELGLKAIAITDHG-----------N-----L------FGAVEFYKAAKKA--GIKP 57 (67)
T ss_pred cCCHHHHHHHHHHcCCCEEEEeeCC-----------c-----c------cCHHHHHHHHHHc--CCeE
Confidence 4689999999999999999987431 1 1 1134778888988 8986
No 132
>PRK13363 protocatechuate 4,5-dioxygenase subunit beta; Provisional
Probab=28.60 E-value=1.1e+02 Score=31.11 Aligned_cols=65 Identities=5% Similarity=0.101 Sum_probs=47.4
Q ss_pred HHHHHHHHHcCCcEEEEeeecc---------CCCccCCCCCCC-C---c---------c-----------ccCCCCCCCh
Q psy110 187 NHWADILASSGAKYVVLTSKHH---------EGYTLWPSKYAF-S---W---------N-----------SMDIGPKRDL 233 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHH---------DGFaLWdSk~t~-~---~---------n-----------s~~~gpkRDl 233 (358)
++.++.++++...-+|+++.|| +.||+...+.-. + + . ........+|
T Consensus 78 ~~~~~~i~~~~PDvlViispdh~~~F~~~~~p~f~I~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gd~eL 157 (335)
T PRK13363 78 ERMRDAIEAARIDVAVIVGNDQMELFTTDNNPAFAIYYGETIRNNPASREKLPSLPPGVKAAMPGYMPDAETTYPVVPEL 157 (335)
T ss_pred HHHHHHHHHhCCCEEEEEcCCchhhcccccCCceEEeecceeccchhhccccccccccccccccccCCCCCcCCCCCHHH
Confidence 6788889999999999999999 677777655421 1 0 0 0111125789
Q ss_pred HHHHHHHHHhhcCCceEEEe
Q psy110 234 VGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 234 V~Ela~A~Rk~~~GLk~GlY 253 (358)
..++++.+++. |+.+..-
T Consensus 158 A~~I~~~l~~~--G~d~~~~ 175 (335)
T PRK13363 158 ARHMIRRLVDD--GFDITAL 175 (335)
T ss_pred HHHHHHHHHHc--CCCeeee
Confidence 99999999999 9988753
No 133
>PRK09505 malS alpha-amylase; Reviewed
Probab=28.42 E-value=1.3e+02 Score=33.37 Aligned_cols=65 Identities=17% Similarity=0.335 Sum_probs=40.3
Q ss_pred HHHHHHHHHHcCCcEEEEee--eccCCCcc------CC-CCCC----CCccccCCCC-CCChHHHHHHHHHhhcCCceEE
Q psy110 186 ANHWADILASSGAKYVVLTS--KHHEGYTL------WP-SKYA----FSWNSMDIGP-KRDLVGELATAIRRKYSDIHFG 251 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTa--KHHDGFaL------Wd-Sk~t----~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~G 251 (358)
-.+.++-+|+.|+.-|.|+. ++.+|..- ++ ..+. .++..++... ..+-+++|+++|+++ |||+.
T Consensus 232 i~~kLdyl~~LGv~aIwlsPi~~~~~~~~~~g~~g~~~~~~yhgY~~~D~~~id~~~Gt~~dfk~Lv~~aH~~--Gi~Vi 309 (683)
T PRK09505 232 LTEKLDYLQQLGVNALWISSPLEQIHGWVGGGTKGDFPHYAYHGYYTLDWTKLDANMGTEADLRTLVDEAHQR--GIRIL 309 (683)
T ss_pred HHHhhHHHHHcCCCEEEeCccccccccccccccccCCCcCCCCCCCccccccCCCCCCCHHHHHHHHHHHHHC--CCEEE
Confidence 35667899999999998763 44333210 01 0111 1222222211 346799999999999 99987
Q ss_pred E
Q psy110 252 L 252 (358)
Q Consensus 252 l 252 (358)
+
T Consensus 310 l 310 (683)
T PRK09505 310 F 310 (683)
T ss_pred E
Confidence 7
No 134
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=28.27 E-value=67 Score=31.38 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=38.9
Q ss_pred CChHHHHHHHHHhhcCCceEEEeeCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEe
Q psy110 231 RDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSD 301 (358)
Q Consensus 231 RDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfD 301 (358)
.|+..+++.++|+++|+||+-.-.+.-.|....+..- ..+... ++.+..++.+++.+|+.|.|=+|
T Consensus 50 ~~~~~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~----~~~~~~-R~~fi~s~~~~~~~~~~DGidiD 115 (318)
T cd02876 50 HDIDKGWIEEVRKANKNIKILPRVLFEGWSYQDLQSL----LNDEQE-REKLIKLLVTTAKKNHFDGIVLE 115 (318)
T ss_pred cchhhHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHH----HcCHHH-HHHHHHHHHHHHHHcCCCcEEEe
Confidence 3555567778888766899885444334432111100 001122 33456789999999999988555
No 135
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=28.07 E-value=69 Score=34.47 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=32.1
Q ss_pred hhhhhcCC-CCCCCCHHHHHHHHHHcCCcEEEEeeeccCC
Q psy110 172 YQDFAKDF-TAEFFDANHWADILASSGAKYVVLTSKHHEG 210 (358)
Q Consensus 172 Y~dfa~~F-np~~FDpdeWa~lak~AGAKYvVlTaKHHDG 210 (358)
|+-++.-+ ..+..|+-+|++.+++.||..+++|.-..||
T Consensus 425 ~~v~~~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DG 464 (538)
T PLN02617 425 YQCTVKGGREGRPIGAYELAKAVEELGAGEILLNCIDCDG 464 (538)
T ss_pred EEEEEecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccc
Confidence 33444445 3468999999999999999999999998887
No 136
>PF11386 VERL: Vitelline envelope receptor for lysin; InterPro: IPR021526 VERL, the egg vitelline envelope (VE) receptor for lysin, is a giant unbranched glycoprotein comprising 30% of the vitelline envelope. Lysin binds to VERL and creates a hole as VERL molecules lose cohesion and splay apart. These proteins are important in the mediation of fertilisation [].
Probab=27.99 E-value=31 Score=27.94 Aligned_cols=18 Identities=33% Similarity=0.802 Sum_probs=15.3
Q ss_pred CceEEEEecCCCccCCCC
Q psy110 126 AKVGIFIHWGVFSVPSFR 143 (358)
Q Consensus 126 AKfGiFIHWG~ySvp~~g 143 (358)
.--|+.+-||+|+||+-.
T Consensus 23 ~~pg~CVf~GPY~Vp~nd 40 (78)
T PF11386_consen 23 DSPGMCVFWGPYSVPKND 40 (78)
T ss_pred CCCccEEEecCcccCCCC
Confidence 357999999999999854
No 137
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=27.27 E-value=1.4e+02 Score=31.21 Aligned_cols=63 Identities=14% Similarity=0.061 Sum_probs=37.3
Q ss_pred HHHHHHHHHcCCcEEEEeeecc--CC---CccCCCCCCCCcc------ccCCCC-CCChHHHHHHHHHhhcCCceEEE
Q psy110 187 NHWADILASSGAKYVVLTSKHH--EG---YTLWPSKYAFSWN------SMDIGP-KRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHH--DG---FaLWdSk~t~~~n------s~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
.+.++-+++.|+..|-|+-=+. .| .=.|++.+- +.+ .++..- ..+=+++|++||+++ |||+.+
T Consensus 25 ~~kldyl~~LGvtaIwl~P~~~~~~~~~~hgY~~~D~~-~~~~~~~~~~id~~fGt~~dl~~Li~~~H~~--Gi~vi~ 99 (479)
T PRK09441 25 AERAPELAEAGITAVWLPPAYKGTSGGYDVGYGVYDLF-DLGEFDQKGTVRTKYGTKEELLNAIDALHEN--GIKVYA 99 (479)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCCCCCCCCCeeccc-ccccccccCCcCcCcCCHHHHHHHHHHHHHC--CCEEEE
Confidence 4556788899999887775322 11 011222221 100 122111 356699999999999 999877
No 138
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=27.25 E-value=69 Score=31.78 Aligned_cols=91 Identities=15% Similarity=0.068 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcccccCccc
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLY 264 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y 264 (358)
.-...+.++++.|||-+|-.+- |...+ .....--...|.++|++. ||+|-.=-.+ | |.
T Consensus 118 ~G~~i~~~Ak~mGAktFVh~sf--------prhms-------~~~l~~Rr~~M~~~C~~l--Gi~fv~~taP-D---P~- 175 (275)
T PF12683_consen 118 RGYTIVWAAKKMGAKTFVHYSF--------PRHMS-------YELLARRRDIMEEACKDL--GIKFVEVTAP-D---PT- 175 (275)
T ss_dssp HHHHHHHHHHHTT-S-EEEEEE--------TTGGG-------SHHHHHHHHHHHHHHHHC--T--EEEEEE-------S-
T ss_pred ccHHHHHHHHHcCCceEEEEec--------hhhcc-------hHHHHHHHHHHHHHHHHc--CCeEEEEeCC-C---CC-
Confidence 4467899999999999886531 11111 000112234677899999 9998654332 2 11
Q ss_pred cCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCC
Q psy110 265 VQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGE 303 (358)
Q Consensus 265 ~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~ 303 (358)
.+ - ...=..+|+++.+-..+.+||.|.-+|-..
T Consensus 176 -sd----~-gv~gaqqfIlE~vp~~i~kYGkdtaff~TN 208 (275)
T PF12683_consen 176 -SD----V-GVAGAQQFILEDVPKWIKKYGKDTAFFCTN 208 (275)
T ss_dssp -ST----C-HHHHHHHHHHHHHHHHHHHH-S--EEEESS
T ss_pred -CC----C-CcHHHHHHHHHHHHHHHHHhCCceeEEecC
Confidence 00 0 011123566888899999999998766543
No 139
>PRK12399 tagatose 1,6-diphosphate aldolase; Reviewed
Probab=27.12 E-value=2.2e+02 Score=28.93 Aligned_cols=89 Identities=13% Similarity=0.105 Sum_probs=56.6
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEe---eC-cccccCc
Q psy110 187 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY---HS-LYEWFNP 262 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY---yS-~~DW~~p 262 (358)
+.=++.+|+.||+.+=+..- |+..-...-| -.+...|+.+.+.|+++ ||.|-+= |- ..+...
T Consensus 108 ~wS~~rike~GadavK~Lly-------y~pD~~~~in----~~k~a~vervg~eC~a~--dipf~lE~ltY~~~~~d~~- 173 (324)
T PRK12399 108 DWSAKRIKEEGADAVKFLLY-------YDVDEPDEIN----EQKKAYIERIGSECVAE--DIPFFLEILTYDEKIADNG- 173 (324)
T ss_pred hhhHHHHHHhCCCeEEEEEE-------ECCCCCHHHH----HHHHHHHHHHHHHHHHC--CCCeEEEEeeccCcccccc-
Confidence 44477889999999987654 4444331111 13779999999999999 9998772 21 122111
Q ss_pred cccCccCCCCCchHHh---hhhhHHHHHHHHh-cCCCCEEEE
Q psy110 263 LYVQDKANNFTTNQFV---TMKTLPELIEIVQ-KYQPEVIWS 300 (358)
Q Consensus 263 ~y~~d~~~~~~~~~y~---~~~~~~Ql~ELi~-rY~PDilWf 300 (358)
+.+|- -+.+..-++|+-+ +|++|++=.
T Consensus 174 -----------~~~yak~kP~~V~~a~kefs~~~~gvDVlKv 204 (324)
T PRK12399 174 -----------SVEYAKVKPHKVNEAMKVFSKPRFGVDVLKV 204 (324)
T ss_pred -----------cHHHHhhChHHHHHHHHHhccCCCCCcEEEE
Confidence 11221 1355667888875 899998533
No 140
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=27.07 E-value=41 Score=31.79 Aligned_cols=69 Identities=16% Similarity=0.251 Sum_probs=53.1
Q ss_pred chhhhhcCCCCCCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceE
Q psy110 171 TYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHF 250 (358)
Q Consensus 171 ~Y~dfa~~Fnp~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~ 250 (358)
+|.|.-. -...+|=..-+.+.+||+.-+++-|---||=.|||-- ..-.++||++++|.+ ||+.
T Consensus 121 GYaDa~R---vgsv~Pl~~P~vaa~ag~DvaMvDTaiKDGkslFdfm------------~~e~l~eFvd~Ah~h--GL~~ 183 (235)
T COG1891 121 GYADAHR---VGSVSPLLLPEVAAEAGADVAMVDTAIKDGKSLFDFM------------DEEELEEFVDLAHEH--GLEV 183 (235)
T ss_pred cccchhh---ccCcCccccHHHHHhcCCCEEEEecccccchhHHhhh------------cHHHHHHHHHHHHHc--chHH
Confidence 4554433 3567788888999999999999988888887776532 225689999999999 9998
Q ss_pred EEeeCc
Q psy110 251 GLYHSL 256 (358)
Q Consensus 251 GlYyS~ 256 (358)
.+==|+
T Consensus 184 AlAGs~ 189 (235)
T COG1891 184 ALAGSL 189 (235)
T ss_pred Hhcccc
Confidence 876554
No 141
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=26.88 E-value=3.6e+02 Score=26.45 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=36.1
Q ss_pred CCCCCChHHHHHHHHHhhcCCceEEEeeCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 227 IGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 227 ~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
.|.+.+++.+-+...+++.||+++--+++.+ ++.--.+.+-|-|..++||+|+--++-
T Consensus 114 lGgkp~V~~~a~~~l~~~~p~l~ivg~h~GY--------------------f~~~e~~~i~~~I~~s~pdil~VgmG~ 171 (253)
T COG1922 114 LGGKPGVAEQAAAKLRAKYPGLKIVGSHDGY--------------------FDPEEEEAIVERIAASGPDILLVGMGV 171 (253)
T ss_pred ecCCHHHHHHHHHHHHHHCCCceEEEecCCC--------------------CChhhHHHHHHHHHhcCCCEEEEeCCC
Confidence 4556666666666666666666665555431 010111367788889999999887763
No 142
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=26.64 E-value=3.7e+02 Score=23.75 Aligned_cols=68 Identities=9% Similarity=0.055 Sum_probs=38.8
Q ss_pred ChHHHHHHHHHhhcCCceEEEeeCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCCC
Q psy110 232 DLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEA 306 (358)
Q Consensus 232 DlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~~ 306 (358)
+...+.+++++++.||+|+.+-......... . ........ .+-+..++.+++.+|+.|.|=+|..+..
T Consensus 49 ~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~-~-----~~~~~~~~-~~~f~~~~~~~v~~~~~DGidiD~E~~~ 116 (210)
T cd00598 49 EPLKGALEELASKKPGLKVLISIGGWTDSSP-F-----TLASDPAS-RAAFANSLVSFLKTYGFDGVDIDWEYPG 116 (210)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEcCCCCCCC-c-----hhhcCHHH-HHHHHHHHHHHHHHcCCCceEEeeeCCC
Confidence 4455566666665348999887765332111 0 00111122 2334568888999999998877765443
No 143
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=26.34 E-value=1.2e+02 Score=31.40 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=38.1
Q ss_pred CCCHHHH-HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEE-eeC
Q psy110 183 FFDANHW-ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGL-YHS 255 (358)
Q Consensus 183 ~FDpdeW-a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~Gl-YyS 255 (358)
-.||..+ ++.+.++||.++.+-+. . ..+-+.+..+++|+. |+++|+ =..
T Consensus 235 ~~Di~~~vv~~~a~aGAD~vTVH~e------------a----------~~~ti~~ai~~akk~--GikvgVD~ln 285 (391)
T PRK13307 235 TLDTGNLEARMAADATADAVVISGL------------A----------PISTIEKAIHEAQKT--GIYSILDMLN 285 (391)
T ss_pred ccChhhHHHHHHHhcCCCEEEEecc------------C----------CHHHHHHHHHHHHHc--CCEEEEEEcC
Confidence 4688888 88999999999876432 1 234578899999999 999999 444
No 144
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=26.24 E-value=1.1e+02 Score=28.12 Aligned_cols=30 Identities=17% Similarity=0.219 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHcCCcEEEEeeeccCCC
Q psy110 182 EFFDANHWADILASSGAKYVVLTSKHHEGY 211 (358)
Q Consensus 182 ~~FDpdeWa~lak~AGAKYvVlTaKHHDGF 211 (358)
+..++.++++.+.++|+.+++++....+|-
T Consensus 144 ~~~~~~~~~~~~~~~ga~~iii~~~~~~g~ 173 (234)
T cd04732 144 SEVSLEELAKRFEELGVKAIIYTDISRDGT 173 (234)
T ss_pred cCCCHHHHHHHHHHcCCCEEEEEeecCCCc
Confidence 467999999999999999999987655443
No 145
>COG1400 SEC65 Signal recognition particle 19 kDa protein [Intracellular trafficking and secretion]
Probab=26.20 E-value=1.1e+02 Score=25.78 Aligned_cols=64 Identities=22% Similarity=0.220 Sum_probs=43.6
Q ss_pred CCCCCCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhh
Q psy110 178 DFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRK 244 (358)
Q Consensus 178 ~Fnp~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~ 244 (358)
.+-.+++-.++.+++++++|-++.|.--|-+=+ .-|.+. . ..-....++|+.+++..++..|+.
T Consensus 26 ~laV~~P~~~ei~~a~~~LGl~~~v~~dk~yPr-~~w~~~-g-~vive~~~~K~~~lk~ia~~lr~~ 89 (93)
T COG1400 26 ELAVENPSLEEIAEALRELGLKPKVERDKKYPR-LWWEIS-G-RVIVESNGKKSKLLKAIAAKLREK 89 (93)
T ss_pred hhcccCCCHHHHHHHHHHcCCCeeechhhcCCC-chhhhC-c-eEEEecCccHhHHHHHHHHHHHHh
Confidence 444578999999999999999998655444443 223333 1 111223457899999999888764
No 146
>PRK10785 maltodextrin glucosidase; Provisional
Probab=26.15 E-value=1.4e+02 Score=32.29 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=40.2
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCC-CCChHHHHHHHHHhhcCCceEEE
Q psy110 187 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
.+-.+-+|+.|+..|-|+-=+... .-+-=.++ +|..++..- ..+-+++|+++|+++ |||+.+
T Consensus 182 ~~kLdYL~~LGv~~I~L~Pif~s~-s~hgYd~~-Dy~~iDp~~Gt~~df~~Lv~~aH~r--GikVil 244 (598)
T PRK10785 182 SEKLPYLKKLGVTALYLNPIFTAP-SVHKYDTE-DYRHVDPQLGGDAALLRLRHATQQR--GMRLVL 244 (598)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCC-CCCCcCcc-cccccCcccCCHHHHHHHHHHHHHC--CCEEEE
Confidence 456788999999999998643210 00000012 333343221 357799999999999 999977
No 147
>PLN03244 alpha-amylase; Provisional
Probab=26.15 E-value=1.4e+02 Score=34.20 Aligned_cols=71 Identities=14% Similarity=0.057 Sum_probs=44.5
Q ss_pred CChHHHHHHHHHhhcCCceEEE---e-eCccc------ccC--c-ccc-Ccc---CCCC------CchHHhhhhhHHHHH
Q psy110 231 RDLVGELATAIRRKYSDIHFGL---Y-HSLYE------WFN--P-LYV-QDK---ANNF------TTNQFVTMKTLPELI 287 (358)
Q Consensus 231 RDlV~Ela~A~Rk~~~GLk~Gl---Y-yS~~D------W~~--p-~y~-~d~---~~~~------~~~~y~~~~~~~Ql~ 287 (358)
-|=+++|+++|+++ ||+|-+ | |+..+ .+. + .|- .+. ...+ ....-+.++++.-++
T Consensus 440 PeDLK~LVD~aH~~--GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~ 517 (872)
T PLN03244 440 PDDFKRLVDEAHGL--GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLN 517 (872)
T ss_pred HHHHHHHHHHHHHC--CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHH
Confidence 35589999999999 999987 2 22111 111 1 111 110 0011 123346678888899
Q ss_pred HHHhcCCCCEEEEeCC
Q psy110 288 EIVQKYQPEVIWSDGE 303 (358)
Q Consensus 288 ELi~rY~PDilWfDg~ 303 (358)
-.++.|++|.+=||+.
T Consensus 518 yWleEyhIDGFRfDaV 533 (872)
T PLN03244 518 WWITEYQIDGFQFHSL 533 (872)
T ss_pred HHHHHhCcCcceeecc
Confidence 9999999999999964
No 148
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=26.13 E-value=1.5e+02 Score=34.00 Aligned_cols=64 Identities=17% Similarity=0.175 Sum_probs=42.3
Q ss_pred CHHHHHHHHHHcCCcEEEEeeecc--CCCccCCCCCCCCccccCCCC-CCChHHHHHHHHHhhcCCceEEE
Q psy110 185 DANHWADILASSGAKYVVLTSKHH--EGYTLWPSKYAFSWNSMDIGP-KRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHH--DGFaLWdSk~t~~~ns~~~gp-kRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
+..+.+.-+++.|...+.++--.. .| ..+--.+. +|..++..- ..|=+++|+++|+++ ||++.+
T Consensus 21 ~~~~~l~YL~~LGis~IyLsPi~~a~~g-s~hGYdv~-D~~~idp~lGt~e~f~~Lv~aah~~--Gi~VIl 87 (879)
T PRK14511 21 DAAELVPYFADLGVSHLYLSPILAARPG-STHGYDVV-DHTRINPELGGEEGLRRLAAALRAH--GMGLIL 87 (879)
T ss_pred HHHHHhHHHHHcCCCEEEECcCccCCCC-CCCCCCcC-CCCCcCCCCCCHHHHHHHHHHHHHC--CCEEEE
Confidence 356778889999999998875432 11 11111122 444444322 458899999999999 999987
No 149
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=25.33 E-value=82 Score=29.52 Aligned_cols=56 Identities=7% Similarity=0.084 Sum_probs=35.4
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCC-CCccccCCCCCCChHHHHHHHHHhhcCCceEEEe
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA-FSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t-~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY 253 (358)
.+++++++++.|++++++. |+..+.+.-+ ..|.. -.+-++++++-++++ ||++++=
T Consensus 96 ~~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~-----~~~~l~~l~~~a~~~--gv~l~lE 152 (284)
T PRK13210 96 MKKAIRLAQDLGIRTIQLA-----GYDVYYEEKSEETRQR-----FIEGLAWAVEQAAAA--QVMLAVE 152 (284)
T ss_pred HHHHHHHHHHhCCCEEEEC-----CcccccccccHHHHHH-----HHHHHHHHHHHHHHh--CCEEEEE
Confidence 4789999999999999863 3322211111 00000 124577788888999 9999974
No 150
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=25.28 E-value=1.1e+02 Score=29.02 Aligned_cols=31 Identities=32% Similarity=0.464 Sum_probs=25.9
Q ss_pred CCCCCHHHHHHHHHHcCCcEEEEeeeccCCC
Q psy110 181 AEFFDANHWADILASSGAKYVVLTSKHHEGY 211 (358)
Q Consensus 181 p~~FDpdeWa~lak~AGAKYvVlTaKHHDGF 211 (358)
.+..++.++++.+.++|+..+++|.-+-+|.
T Consensus 152 ~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~ 182 (254)
T TIGR00735 152 STGLDAVEWAKEVEKLGAGEILLTSMDKDGT 182 (254)
T ss_pred cCCCCHHHHHHHHHHcCCCEEEEeCcCcccC
Confidence 3678999999999999999999987555443
No 151
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=25.23 E-value=1.4e+02 Score=30.25 Aligned_cols=69 Identities=13% Similarity=-0.007 Sum_probs=46.1
Q ss_pred HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCC----CCChHHHHHHHHHhhc-CCceEEEeeCcccc
Q psy110 190 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVGELATAIRRKY-SDIHFGLYHSLYEW 259 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~~-~GLk~GlYyS~~DW 259 (358)
|+.+++||+..|=|-+-|---+.-|=|..+ +-.+-..|. +..++.|+++++|+.- +++.+|+=.|..++
T Consensus 156 A~ra~~aGfDgVEih~ahGyLl~QFlSp~~-N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~ 229 (370)
T cd02929 156 ALRARDAGFDIVYVYAAHGYLPLQFLLPRY-NKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDEL 229 (370)
T ss_pred HHHHHHcCCCEEEEcccccchHHHhhCccc-cCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHh
Confidence 567788999999998888333333555554 222223443 4589999999999972 34567777776554
No 152
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=25.22 E-value=68 Score=32.17 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=41.8
Q ss_pred CCCCCH---HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEe
Q psy110 181 AEFFDA---NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 181 p~~FDp---deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY 253 (358)
|...|| +..|+..++.|-||||+|+---| -..-| +--...+.+++.|+..|+.++=+-
T Consensus 94 P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRD--------------DL~DG-GA~hfa~~i~~Ire~~P~t~iEvL 154 (306)
T COG0320 94 PNPLDPDEPERVAEAVKDMGLKYVVITSVDRD--------------DLPDG-GAQHFAECIRAIRELNPQTTIEVL 154 (306)
T ss_pred CCCCCCchHHHHHHHHHHhCCCeEEEEeeccc--------------ccccc-chHHHHHHHHHHHhhCCCceEEEe
Confidence 555554 67899999999999999986433 12112 445678888999999777777653
No 153
>PRK09936 hypothetical protein; Provisional
Probab=25.14 E-value=1.9e+02 Score=29.11 Aligned_cols=63 Identities=21% Similarity=0.492 Sum_probs=42.6
Q ss_pred CCCCC-CCCHHHHHHH---HHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCce--EE
Q psy110 178 DFTAE-FFDANHWADI---LASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIH--FG 251 (358)
Q Consensus 178 ~Fnp~-~FDpdeWa~l---ak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk--~G 251 (358)
-||-+ .+.+++|-++ .++.|++-+|+- |-. +. ++ +-|..+=.+....++++++ ||+ +|
T Consensus 28 p~n~d~~~~~~qWq~~~~~~~~~G~~tLivQ---------Wt~-yG---~~-~fg~~~g~La~~l~~A~~~--Gl~v~vG 91 (296)
T PRK09936 28 PQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQ---------WTR-YG---DA-DFGGQRGWLAKRLAAAQQA--GLKLVVG 91 (296)
T ss_pred cccccCCCCHHHHHHHHHHHHHcCCcEEEEE---------eee-cc---CC-CcccchHHHHHHHHHHHHc--CCEEEEc
Confidence 34444 7899999765 567899998874 211 11 11 2233467889999999999 887 58
Q ss_pred EeeCc
Q psy110 252 LYHSL 256 (358)
Q Consensus 252 lYyS~ 256 (358)
+|+-.
T Consensus 92 L~~Dp 96 (296)
T PRK09936 92 LYADP 96 (296)
T ss_pred ccCCh
Confidence 88754
No 154
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=24.97 E-value=49 Score=30.78 Aligned_cols=56 Identities=11% Similarity=0.003 Sum_probs=35.9
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEe
Q psy110 187 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY 253 (358)
+++++++++.|++++++.+-.+ +-..+ ..... .--.+-++++++-|++. ||++++=
T Consensus 87 ~~~i~~a~~lg~~~i~~~~g~~------~~~~~--~~~~~-~~~~~~l~~l~~~A~~~--gi~l~lE 142 (254)
T TIGR03234 87 ALAIAYARALGCPQVNCLAGKR------PAGVS--PEEAR-ATLVENLRYAADALDRI--GLTLLIE 142 (254)
T ss_pred HHHHHHHHHhCCCEEEECcCCC------CCCCC--HHHHH-HHHHHHHHHHHHHHHhc--CCEEEEE
Confidence 5799999999999987654211 00011 00000 00136789999999999 9999983
No 155
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=24.76 E-value=1.8e+02 Score=32.58 Aligned_cols=113 Identities=17% Similarity=0.233 Sum_probs=68.1
Q ss_pred HHHHHHcCCcEEEE--eeeccCCCcc--CCCCCCCCccccC---------CCCC----CChHHHHHHHHHhhcCCceEEE
Q psy110 190 ADILASSGAKYVVL--TSKHHEGYTL--WPSKYAFSWNSMD---------IGPK----RDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 190 a~lak~AGAKYvVl--TaKHHDGFaL--WdSk~t~~~ns~~---------~gpk----RDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
.+-+|+.|..+|=| +..+.+.=-+ +...+.+.||..+ .+|. ..=+|.|++|++|+ ||.|.+
T Consensus 206 i~yLk~LGvtaVeLLPV~~~~~~~~l~~~gl~n~WGYdP~~fFAp~~~Yss~p~p~~~i~EfK~mV~~lHka--GI~VIL 283 (697)
T COG1523 206 IDYLKDLGVTAVELLPVFDFYDEPHLDKSGLNNNWGYDPLNFFAPEGRYASNPEPATRIKEFKDMVKALHKA--GIEVIL 283 (697)
T ss_pred HHHHHHhCCceEEEecceEEeccccccccccccccCCCcccccCCCccccCCCCcchHHHHHHHHHHHHHHc--CCEEEE
Confidence 88999999999854 3444443333 2222223334322 2221 33478899999999 999987
Q ss_pred ---e-eCc----------ccccCcc--ccCccCC----------CCC-chHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 253 ---Y-HSL----------YEWFNPL--YVQDKAN----------NFT-TNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 253 ---Y-yS~----------~DW~~p~--y~~d~~~----------~~~-~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
| |+. +++-.|. |+.+... ... ..+.+.+++.+-|+=.++.|++|.+=||-.-
T Consensus 284 DVVfNHTae~~~~g~t~~f~~id~~~Yyr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~ 362 (697)
T COG1523 284 DVVFNHTAEGNELGPTLSFRGIDPNYYYRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAG 362 (697)
T ss_pred EEeccCcccccCcCcccccccCCcCceEEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchh
Confidence 5 331 1222222 1111111 111 2356678889999999999999999999753
No 156
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=24.55 E-value=86 Score=29.65 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=28.1
Q ss_pred CCCCCCCHHHHHHHHHHcCCcEEEEeeeccCC
Q psy110 179 FTAEFFDANHWADILASSGAKYVVLTSKHHEG 210 (358)
Q Consensus 179 Fnp~~FDpdeWa~lak~AGAKYvVlTaKHHDG 210 (358)
|..+..++.++++.+.++|+..+++|....||
T Consensus 141 w~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g 172 (241)
T PRK14024 141 WTRDGGDLWEVLERLDSAGCSRYVVTDVTKDG 172 (241)
T ss_pred eeecCccHHHHHHHHHhcCCCEEEEEeecCCC
Confidence 43456799999999999999999999998886
No 157
>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function.
Probab=24.02 E-value=50 Score=30.67 Aligned_cols=69 Identities=17% Similarity=0.468 Sum_probs=40.5
Q ss_pred hhhhcCCCC----CCCCHHHHHHHHHHcCCc----------------EEEEeeeccCCCccCCCCCCCCccccCCCC--C
Q psy110 173 QDFAKDFTA----EFFDANHWADILASSGAK----------------YVVLTSKHHEGYTLWPSKYAFSWNSMDIGP--K 230 (358)
Q Consensus 173 ~dfa~~Fnp----~~FDpdeWa~lak~AGAK----------------YvVlTaKHHDGFaLWdSk~t~~~ns~~~gp--k 230 (358)
++++..++- ..+||++|.+.++..... -..-.|+. -||..+-|-.+ ..| +
T Consensus 48 ~~~~~~~~i~~i~~~Y~~~~w~~~v~~~e~epE~g~RC~~Cy~~RL~~tA~~A~e-~gfd~FtTTL~-------~Sp~k~ 119 (176)
T PF02677_consen 48 KRFAEKLGIPLIEGDYDPEEWLRAVKGLEDEPEGGKRCRVCYDLRLEKTAQYAKE-LGFDYFTTTLL-------ISPYKN 119 (176)
T ss_pred HHHHHHcCCCEEecCCCHHHHHHHHhhCccCCccCchhHHHHHHHHHHHHHHHHH-cCCCEEEcccc-------CcCccC
Confidence 344444433 349999999888754322 11222333 36777666655 233 4
Q ss_pred CChHHHHHHHHHhhcCCceE
Q psy110 231 RDLVGELATAIRRKYSDIHF 250 (358)
Q Consensus 231 RDlV~Ela~A~Rk~~~GLk~ 250 (358)
-++|.++.+++-++. |++|
T Consensus 120 ~~~I~~iG~~~~~~~-gv~f 138 (176)
T PF02677_consen 120 HELINEIGERLAKEY-GVEF 138 (176)
T ss_pred HHHHHHHHHHHHHhh-CCeE
Confidence 588999988887773 4443
No 158
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=23.90 E-value=1.4e+02 Score=31.44 Aligned_cols=100 Identities=10% Similarity=0.176 Sum_probs=55.9
Q ss_pred HHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcccccCccccCc
Q psy110 188 HWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQD 267 (358)
Q Consensus 188 eWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d 267 (358)
+=++|+|+.|++..=+.-.--- +.|.-.. .+| . -.-+.-.+|+++|+++ ||+..+-..+ |-.|.+..+
T Consensus 57 eDi~L~~~lG~~~yRfSIsWsR---I~P~g~~-~~N---~-~gl~~Y~~lid~l~~~--GI~P~VTL~H--~dlP~~L~~ 124 (467)
T TIGR01233 57 VDLELAEEYGVNGIRISIAWSR---IFPTGYG-EVN---E-KGVEFYHKLFAECHKR--HVEPFVTLHH--FDTPEALHS 124 (467)
T ss_pred HHHHHHHHcCCCEEEEecchhh---ccCCCCC-CcC---H-HHHHHHHHHHHHHHHc--CCEEEEeccC--CCCcHHHHH
Confidence 4468999999988765433110 1111111 111 0 1357788999999999 9997764333 445665544
Q ss_pred cCCCCCchHHhhhhhHHHHHHHHhcCCCCE-EEEeC
Q psy110 268 KANNFTTNQFVTMKTLPELIEIVQKYQPEV-IWSDG 302 (358)
Q Consensus 268 ~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDi-lWfDg 302 (358)
. +.+.+.+-++ ++..=.+-++++|+ |+ .|+-.
T Consensus 125 ~-GGW~n~~~v~-~F~~YA~~~f~~fg-dVk~WiT~ 157 (467)
T TIGR01233 125 N-GDFLNRENIE-HFIDYAAFCFEEFP-EVNYWTTF 157 (467)
T ss_pred c-CCCCCHHHHH-HHHHHHHHHHHHhC-CCCEEEEe
Confidence 3 5555544332 22333444667776 45 67654
No 159
>KOG1065|consensus
Probab=23.65 E-value=2e+02 Score=32.70 Aligned_cols=36 Identities=33% Similarity=0.560 Sum_probs=27.2
Q ss_pred CchhhhhcCC--CCCCCCH-HHHHHHHHHcCCcEEEEee
Q psy110 170 FTYQDFAKDF--TAEFFDA-NHWADILASSGAKYVVLTS 205 (358)
Q Consensus 170 ~~Y~dfa~~F--np~~FDp-deWa~lak~AGAKYvVlTa 205 (358)
..|.|=...| ++..|-. .+.++.+.+-|+||+++.-
T Consensus 334 iDyMd~ykDFTvd~~~fp~~~~fv~~Lh~~G~kyvliid 372 (805)
T KOG1065|consen 334 IDYMDGYKDFTVDKVWFPDLKDFVDDLHARGFKYVLIID 372 (805)
T ss_pred hhhhhcccceeeccccCcchHHHHHHHHhCCCeEEEEeC
Confidence 3444444444 6777877 9999999999999999864
No 160
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.61 E-value=93 Score=29.38 Aligned_cols=31 Identities=32% Similarity=0.478 Sum_probs=25.9
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeeeccCC
Q psy110 180 TAEFFDANHWADILASSGAKYVVLTSKHHEG 210 (358)
Q Consensus 180 np~~FDpdeWa~lak~AGAKYvVlTaKHHDG 210 (358)
+++.+++.++++.+.++|+.++++|.-+.||
T Consensus 149 ~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g 179 (253)
T PRK02083 149 KPTGLDAVEWAKEVEELGAGEILLTSMDRDG 179 (253)
T ss_pred eecCCCHHHHHHHHHHcCCCEEEEcCCcCCC
Confidence 4467899999999999999999998765543
No 161
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=23.46 E-value=1.3e+02 Score=30.05 Aligned_cols=67 Identities=22% Similarity=0.198 Sum_probs=42.1
Q ss_pred HHHHHHcCCcEEEEeeeccCCCc--cCCCCCCCCccccCCCC----CCChHHHHHHHHHhhc-CCceEEEeeCcccc
Q psy110 190 ADILASSGAKYVVLTSKHHEGYT--LWPSKYAFSWNSMDIGP----KRDLVGELATAIRRKY-SDIHFGLYHSLYEW 259 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFa--LWdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~~-~GLk~GlYyS~~DW 259 (358)
|+.+++||+..|=+-+-| |+. -|-|..+ +-..-..|. +.+++.|+++++|+.- +.+.+++=.|..|+
T Consensus 147 A~ra~~aGfDgVeih~ah--GyLl~qFlsp~~-N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~~ 220 (343)
T cd04734 147 ARRCQAGGLDGVELQAAH--GHLIDQFLSPLT-NRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDED 220 (343)
T ss_pred HHHHHHcCCCEEEEcccc--chHHHHhhCCCc-CCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhhc
Confidence 456678999999998777 553 2445544 222222333 3499999999999983 22345555665443
No 162
>PLN00196 alpha-amylase; Provisional
Probab=23.42 E-value=1.7e+02 Score=30.49 Aligned_cols=57 Identities=23% Similarity=0.367 Sum_probs=32.3
Q ss_pred HHHHHHcCCcEEEEeeecc----CCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEE
Q psy110 190 ADILASSGAKYVVLTSKHH----EGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHH----DGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
++-+++.|..-|-|+-=.+ .|+ |+..+- +-+..+-| ..+-+++|+++|+++ |||+.+
T Consensus 50 ldyL~~LGvtaIWL~P~~~s~s~hGY--~~~D~y-~ld~~~fG-t~~elk~Lv~~aH~~--GIkVil 110 (428)
T PLN00196 50 VDDIAAAGITHVWLPPPSHSVSEQGY--MPGRLY-DLDASKYG-NEAQLKSLIEAFHGK--GVQVIA 110 (428)
T ss_pred HHHHHHcCCCEEEeCCCCCCCCCCCC--CccccC-CCCcccCC-CHHHHHHHHHHHHHC--CCEEEE
Confidence 4456677777766653211 132 222221 11111234 345688999999999 999866
No 163
>PRK15341 invasion lipoprotein InvH; Provisional
Probab=23.06 E-value=38 Score=29.63 Aligned_cols=37 Identities=43% Similarity=0.598 Sum_probs=24.4
Q ss_pred eehhhHhhhcccc--ccccccCCCCCCCCCcCCCCCCCcc
Q psy110 7 TILFFILSCAQGI--YSAVKPVPQPGAPNKVNSTNAKPRD 44 (358)
Q Consensus 7 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 44 (358)
.-+|+++.|||-- -|..|||.|||+. |-...||+.-|
T Consensus 8 lpvflligcaqv~~p~s~skp~qq~~~q-keq~a~a~sid 46 (147)
T PRK15341 8 LPVFLLIGCAQVPLPSSVSKPVQQPGAQ-KEQLANANSID 46 (147)
T ss_pred hhHHHHhcccccCCCcCCCCcccCcchh-HHHHhccccHH
Confidence 3468888999954 4678999999975 23333444333
No 164
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=22.80 E-value=1e+02 Score=28.93 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=36.5
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEe
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY 253 (358)
.++.++++++.||++|++.+ |. .+...+ . ... ..--.+-++++++.++++ |+++++=
T Consensus 87 ~~~~i~~a~~lga~~i~~~~----g~--~~~~~~-~-~~~-~~~~~~~l~~l~~~a~~~--Gv~l~lE 143 (258)
T PRK09997 87 VAAAIRYARALGNKKINCLV----GK--TPAGFS-S-EQI-HATLVENLRYAANMLMKE--DILLLIE 143 (258)
T ss_pred HHHHHHHHHHhCCCEEEECC----CC--CCCCCC-H-HHH-HHHHHHHHHHHHHHHHHc--CCEEEEE
Confidence 47899999999999987632 21 111111 0 000 000236778999999999 9999984
No 165
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=22.74 E-value=1.1e+02 Score=29.57 Aligned_cols=67 Identities=13% Similarity=0.115 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcCCceEEEeeCcccccCccccCccCC-CCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCCC
Q psy110 235 GELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKAN-NFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEA 306 (358)
Q Consensus 235 ~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~~-~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~~ 306 (358)
.+++++++++ |+|+-+-.+.++- ..+...... ....... ++.+..++.+++.+|+.|.|=+|..+..
T Consensus 48 ~~~~~~a~~~--~~kv~~~i~~~~~--~~~~~~~~~~~l~~~~~-r~~fi~~iv~~l~~~~~DGidiDwE~~~ 115 (313)
T cd02874 48 ERLIEAAKRR--GVKPLLVITNLTN--GNFDSELAHAVLSNPEA-RQRLINNILALAKKYGYDGVNIDFENVP 115 (313)
T ss_pred HHHHHHHHHC--CCeEEEEEecCCC--CCCCHHHHHHHhcCHHH-HHHHHHHHHHHHHHhCCCcEEEecccCC
Confidence 6899999999 9999877665431 000000000 0001111 2345678999999999998877765543
No 166
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=22.72 E-value=1.8e+02 Score=28.25 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 183 FFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 183 ~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
++..+..++.++++|++.+++. ... + |=..++.++|+++ ||...+..++
T Consensus 103 ~~G~e~f~~~~~~aGvdGviip------------DLp---------~--ee~~~~~~~~~~~--gl~~I~lvap 151 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIP------------DLP---------P--EEAEELRAAAKKH--GLDLIFLVAP 151 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEEC------------CCC---------H--HHHHHHHHHHHHc--CCcEEEEeCC
Confidence 5778999999999999999984 111 1 5678999999999 9999887664
No 167
>TIGR03356 BGL beta-galactosidase.
Probab=22.59 E-value=1.6e+02 Score=30.50 Aligned_cols=94 Identities=10% Similarity=0.088 Sum_probs=52.1
Q ss_pred HHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcccccCccccCc
Q psy110 188 HWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQD 267 (358)
Q Consensus 188 eWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d 267 (358)
+=++++|++|++.+=+.-.-.. +.|.-.. .+|. -.-+...+++++|+++ ||++.+-.++ |-.|.+..+
T Consensus 58 eDi~l~~~~G~~~~R~si~Wsr---i~p~g~~-~~n~----~~~~~y~~~i~~l~~~--gi~pivtL~H--fd~P~~l~~ 125 (427)
T TIGR03356 58 EDVALMKELGVDAYRFSIAWPR---IFPEGTG-PVNP----KGLDFYDRLVDELLEA--GIEPFVTLYH--WDLPQALED 125 (427)
T ss_pred HHHHHHHHcCCCeEEcccchhh---cccCCCC-CcCH----HHHHHHHHHHHHHHHc--CCeeEEeecc--CCccHHHHh
Confidence 4478899999987654432110 1111000 0110 0237788999999999 9998775443 334655444
Q ss_pred cCCCCCchHHhhhhhHHHHHHHHhcCCC
Q psy110 268 KANNFTTNQFVTMKTLPELIEIVQKYQP 295 (358)
Q Consensus 268 ~~~~~~~~~y~~~~~~~Ql~ELi~rY~P 295 (358)
+ +.+.+.+.+ +.+..=.+.++++|+.
T Consensus 126 ~-gGw~~~~~~-~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 126 R-GGWLNRDTA-EWFAEYAAVVAERLGD 151 (427)
T ss_pred c-CCCCChHHH-HHHHHHHHHHHHHhCC
Confidence 4 555554443 2334445556666653
No 168
>PF04741 InvH: InvH outer membrane lipoprotein; InterPro: IPR006830 This family represents the Salmonella outer membrane lipoprotein InvH. The molecular function of this protein is unknown, but it is required for the localisation to outer membrane of InvG, which is involved in a type III secretion apparatus mediating host cell invasion [, ].; GO: 0009405 pathogenesis
Probab=22.41 E-value=41 Score=29.83 Aligned_cols=39 Identities=36% Similarity=0.524 Sum_probs=27.1
Q ss_pred eehhhHhhhccc--cccccccCCCCCCCCCcCCCCCCCcchH
Q psy110 7 TILFFILSCAQG--IYSAVKPVPQPGAPNKVNSTNAKPRDDA 46 (358)
Q Consensus 7 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (358)
.-+|+++.|||- .-|..||+.||++. |-...||+.-|+.
T Consensus 8 lpvf~ligcaqv~~~ss~s~p~qq~~~q-keq~a~a~sid~c 48 (147)
T PF04741_consen 8 LPVFLLIGCAQVPSPSSGSKPAQQPEAQ-KEQQANADSIDEC 48 (147)
T ss_pred hhHHHHhhhccCCCCcccCCcccCcchh-HHHHhccccHHHH
Confidence 457899999995 45677999999874 4445566555543
No 169
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=22.29 E-value=1.9e+02 Score=27.66 Aligned_cols=74 Identities=7% Similarity=-0.032 Sum_probs=40.3
Q ss_pred HHHHHhhcCCceEEEeeCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCCCCCccccChHHHH
Q psy110 238 ATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFL 317 (358)
Q Consensus 238 a~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w~~p~~~~~~~e~~ 317 (358)
+++||+. |+|+-+-...+.. ..|..-. ....-..++ ...+.+++.+|+.|.|=+| |+.|...-...+|+
T Consensus 65 i~~~~~~--g~KVllSiGG~~~--~~fs~~a----~~~~~r~~f-~~s~~~~~~~~~~DGiDiD--wE~p~~~~~~~~ll 133 (256)
T cd06546 65 LAILQSS--GVKVMGMLGGAAP--GSFSRLD----DDDEDFERY-YGQLRDMIRRRGLDGLDLD--VEEPMSLDGIIRLI 133 (256)
T ss_pred HHHHHhC--CCEEEEEECCCCC--CCccccc----CCHHHHHHH-HHHHHHHHHHhCCCceEEe--eecCCCHhHHHHHH
Confidence 3578888 9999986655432 1222110 111222233 4568899999999987444 54443211223455
Q ss_pred HHHHh
Q psy110 318 AWLYN 322 (358)
Q Consensus 318 a~~yn 322 (358)
.-+++
T Consensus 134 ~~Lr~ 138 (256)
T cd06546 134 DRLRS 138 (256)
T ss_pred HHHHH
Confidence 55554
No 170
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=22.10 E-value=1.4e+02 Score=30.17 Aligned_cols=16 Identities=13% Similarity=0.071 Sum_probs=13.4
Q ss_pred HHHHHHHHhhcCCceEEE
Q psy110 235 GELATAIRRKYSDIHFGL 252 (358)
Q Consensus 235 ~Ela~A~Rk~~~GLk~Gl 252 (358)
.++++||+|+ |+|+.-
T Consensus 49 ~~~idaAHkn--GV~Vlg 64 (339)
T cd06547 49 ADWINAAHRN--GVPVLG 64 (339)
T ss_pred cHHHHHHHhc--CCeEEE
Confidence 4789999999 999743
No 171
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=21.94 E-value=1.9e+02 Score=29.00 Aligned_cols=131 Identities=14% Similarity=0.130 Sum_probs=74.0
Q ss_pred HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCC----CCChHHHHHHHHHhhcCCc-eEEEeeCcccccCccc
Q psy110 190 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVGELATAIRRKYSDI-HFGLYHSLYEWFNPLY 264 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~~~GL-k~GlYyS~~DW~~p~y 264 (358)
|+.+++||+..|=+-+-|.--++-|=|..+ +...-..|. +..++.|+++|+|+.- |- .+|+=.|..|+....
T Consensus 158 A~~a~~aGfDgVeih~ahGyLl~qFlSp~~-N~R~D~yGGslenR~rf~~eii~air~~v-g~d~v~vRis~~~~~~~~- 234 (338)
T cd02933 158 ARNAIEAGFDGVEIHGANGYLIDQFLRDGS-NKRTDEYGGSIENRARFLLEVVDAVAEAI-GADRVGIRLSPFGTFNDM- 234 (338)
T ss_pred HHHHHHcCCCEEEEccccchhHHHhcCCcc-CCCCCcCCCcHHHhhhHHHHHHHHHHHHh-CCCceEEEECccccCCCC-
Confidence 567888999999999888544555666655 322233342 4589999999999872 44 477777776653210
Q ss_pred cCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEe-CCCCCCccccChHHHHHHHHhcCCCCCcEEEeccc
Q psy110 265 VQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSD-GEWEAPAEYWKSREFLAWLYNESPVKNTVVVNDRW 336 (358)
Q Consensus 265 ~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfD-g~w~~p~~~~~~~e~~a~~yn~~~~~~~VvvNdR~ 336 (358)
....+.++. -++-+++.+.+.|+|=.- |.+......+ ..++.+.++... .--|+++.|.
T Consensus 235 ----~~~~~~ee~------~~~~~~l~~~g~d~i~vs~g~~~~~~~~~-~~~~~~~ik~~~--~ipvi~~G~i 294 (338)
T cd02933 235 ----GDSDPEATF------SYLAKELNKRGLAYLHLVEPRVAGNPEDQ-PPDFLDFLRKAF--KGPLIAAGGY 294 (338)
T ss_pred ----CCCCCHHHH------HHHHHHHHHcCCcEEEEecCCCCCccccc-chHHHHHHHHHc--CCCEEEECCC
Confidence 001111122 245556677788876442 3232111111 124455555432 2247778776
No 172
>PF13069 DUF3933: Protein of unknown function (DUF3933)
Probab=21.89 E-value=57 Score=24.14 Aligned_cols=18 Identities=39% Similarity=0.761 Sum_probs=15.7
Q ss_pred HHcCCcEEEEeeeccCCC
Q psy110 194 ASSGAKYVVLTSKHHEGY 211 (358)
Q Consensus 194 k~AGAKYvVlTaKHHDGF 211 (358)
-+.|-+|+|+|++..+|.
T Consensus 35 lrtg~ry~vitaeea~gl 52 (53)
T PF13069_consen 35 LRTGNRYVVITAEEAEGL 52 (53)
T ss_pred cccCCEEEEEEehhhccC
Confidence 367999999999999885
No 173
>KOG0225|consensus
Probab=21.88 E-value=1.1e+02 Score=31.43 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=31.1
Q ss_pred EEEeCCCCCCccccChHHHHHHHHhcCCCCCcEEE--ecccCCCCCCC----CCCccCCCCCCCCC
Q psy110 298 IWSDGEWEAPAEYWKSREFLAWLYNESPVKNTVVV--NDRWCNTCLCK----HGGYLTCEDKYNPV 357 (358)
Q Consensus 298 lWfDg~w~~p~~~~~~~e~~a~~yn~~~~~~~Vvv--NdR~g~~~~~~----hgd~~t~~d~~~p~ 357 (358)
|+-||.- +....|.+-.++ .++. -|.|.| |+.+|.++... ..|||+++| |.|+
T Consensus 193 lYGDGAa-NQGQ~fEa~NMA-~LW~----LP~IFvCENN~yGMGTs~~Rasa~teyykRG~-yiPG 251 (394)
T KOG0225|consen 193 LYGDGAA-NQGQVFEAFNMA-ALWK----LPVIFVCENNHYGMGTSAERASASTEYYKRGD-YIPG 251 (394)
T ss_pred Eeccccc-cchhHHHHhhHH-HHhC----CCEEEEEccCCCccCcchhhhhcChHHHhccC-CCCc
Confidence 6777762 222222222222 3333 255555 99999876432 359999996 8986
No 174
>PLN02899 alpha-galactosidase
Probab=21.59 E-value=60 Score=35.68 Aligned_cols=22 Identities=18% Similarity=0.240 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhhcCCceEEEeeCc
Q psy110 233 LVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 233 lV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
=++.|++-++.. |||||+|-..
T Consensus 114 GmK~LADYVHsk--GLKFGIY~~~ 135 (633)
T PLN02899 114 GFTEVAEKVHAM--GLKFGIHVMR 135 (633)
T ss_pred CcHHHHHHHHhC--CcceEEEecC
Confidence 488999999999 9999999653
No 175
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=21.58 E-value=2e+02 Score=29.29 Aligned_cols=69 Identities=16% Similarity=0.155 Sum_probs=45.5
Q ss_pred HHHHHHcCCcEEEEeeeccC-CCccCCCCCCCCccccCCCC----CCChHHHHHHHHHhhc-CCceEEEeeCcccc
Q psy110 190 ADILASSGAKYVVLTSKHHE-GYTLWPSKYAFSWNSMDIGP----KRDLVGELATAIRRKY-SDIHFGLYHSLYEW 259 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHD-GFaLWdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~~-~GLk~GlYyS~~DW 259 (358)
|+.+++||+..|=+-+-||. -++-|=|..+ +...-..|. +..++-|+++++|+.- +++.+|+=.|..||
T Consensus 156 A~ra~~AGfDgVEih~ah~GyLl~qFLSp~~-N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~ 230 (382)
T cd02931 156 AVIAKEAGFDGVEIHAVHEGYLLDQFTISLF-NKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSY 230 (382)
T ss_pred HHHHHHcCCCEEEEeccccChHHHHhcCCcc-CCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhh
Confidence 45677899999999887753 2334555544 222233343 4589999999999872 24678887777655
No 176
>PRK14828 undecaprenyl pyrophosphate synthase; Provisional
Probab=21.44 E-value=3.8e+02 Score=26.15 Aligned_cols=31 Identities=23% Similarity=0.252 Sum_probs=25.0
Q ss_pred CCChHHHHHHHHHhhcCCceE-EEe-eCcccccCc
Q psy110 230 KRDLVGELATAIRRKYSDIHF-GLY-HSLYEWFNP 262 (358)
Q Consensus 230 kRDlV~Ela~A~Rk~~~GLk~-GlY-yS~~DW~~p 262 (358)
+.+.+.++++.|.+. |||. .+| +|.-.|..|
T Consensus 56 G~~~l~~~~~~~~~~--gIk~lTvYaFS~eN~~R~ 88 (256)
T PRK14828 56 GAAKIGEFLGWCDET--DVNVVTLYLLSTDNLGRP 88 (256)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEEEEEhhhcCCC
Confidence 468999999999999 9995 566 677677654
No 177
>PLN02428 lipoic acid synthase
Probab=21.43 E-value=2e+02 Score=29.46 Aligned_cols=53 Identities=23% Similarity=0.282 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEE
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
.|.+-++.+++.|++|+|+|+---|-. .....+-+.++++++|+..|++++.+
T Consensus 134 Ep~~vA~~v~~~Glk~vvltSg~rddl---------------~D~ga~~~~elir~Ir~~~P~i~Ie~ 186 (349)
T PLN02428 134 EPENVAEAIASWGVDYVVLTSVDRDDL---------------PDGGSGHFAETVRRLKQLKPEILVEA 186 (349)
T ss_pred hHHHHHHHHHHcCCCEEEEEEcCCCCC---------------CcccHHHHHHHHHHHHHhCCCcEEEE
Confidence 344678888889999999998632110 01134567777777777655555554
No 178
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=21.42 E-value=2.8e+02 Score=24.75 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=34.7
Q ss_pred CHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCc
Q psy110 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSL 256 (358)
Q Consensus 185 DpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~ 256 (358)
|+++.+++++++|+..+++ |++- . |-..+.++.+|+. |+++++-.+.
T Consensus 67 ~~~~~~~~~~~~gadgv~v----h~~~------------------~-~~~~~~~~~~~~~--g~~~~~~~~~ 113 (210)
T TIGR01163 67 NPDRYIEDFAEAGADIITV----HPEA------------------S-EHIHRLLQLIKDL--GAKAGIVLNP 113 (210)
T ss_pred CHHHHHHHHHHcCCCEEEE----ccCC------------------c-hhHHHHHHHHHHc--CCcEEEEECC
Confidence 6788999999999999887 4310 1 3335666888999 8998886553
No 179
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=21.31 E-value=1.7e+02 Score=28.88 Aligned_cols=69 Identities=12% Similarity=0.109 Sum_probs=38.9
Q ss_pred CCChHHHHHHHHHhhcCCceEEEeeCcccccCccccCccCCCCCchHHhhhhhHHHHHHHHhcCCCCEEEEeCCC
Q psy110 230 KRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEW 304 (358)
Q Consensus 230 kRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~~~~~~~~y~~~~~~~Ql~ELi~rY~PDilWfDg~w 304 (358)
..+.++++.+ .|++.|++|+.+-...+.+....+..- ..+... ++.+...+.+++.+|+.|.|=+|..+
T Consensus 54 ~~~~~~~~~~-lk~~~p~lkvlisiGG~~~~~~~f~~~----~~~~~~-r~~fi~~iv~~l~~~~~DGidiDwE~ 122 (362)
T cd02872 54 DLGLYERFNA-LKEKNPNLKTLLAIGGWNFGSAKFSAM----AASPEN-RKTFIKSAIAFLRKYGFDGLDLDWEY 122 (362)
T ss_pred hhhHHHHHHH-HHhhCCCceEEEEEcCCCCCcchhHHH----hCCHHH-HHHHHHHHHHHHHHcCCCCeeeeeec
Confidence 3567777764 455556899887665443321111110 001111 23345677789999999988777544
No 180
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.31 E-value=7.5e+02 Score=23.90 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=40.4
Q ss_pred HHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCC----CCChHHHHHHHHHhh-cCCceEEEeeCccc
Q psy110 189 WADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGP----KRDLVGELATAIRRK-YSDIHFGLYHSLYE 258 (358)
Q Consensus 189 Wa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gp----kRDlV~Ela~A~Rk~-~~GLk~GlYyS~~D 258 (358)
=++.+++||+..|=+-+-|.-=++-|=|..+ +-..-..|. +-.++.|.++++|+. ++++.+++=.|..+
T Consensus 146 aA~~a~~aGfDgveih~~~gyL~~qFlsp~~-n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~ 219 (327)
T cd02803 146 AARRAKEAGFDGVEIHGAHGYLLSQFLSPYT-NKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD 219 (327)
T ss_pred HHHHHHHcCCCEEEEcchhhhHHHHhcCccc-cCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc
Confidence 3566778999999887765321222333333 111112221 336788999999986 23567777677644
No 181
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=21.24 E-value=1.2e+02 Score=28.65 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=35.8
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCC-CCccccCCCCCCChHHHHHHHHHhhcCCceEEEe
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA-FSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLY 253 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t-~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlY 253 (358)
-++.++++++.|++++++. |...++.... ..|.. -.+-++++++.|+++ |+++++=
T Consensus 96 ~~~~i~~a~~lG~~~v~~~-----~~~~~~~~~~~~~~~~-----~~~~l~~l~~~A~~~--Gv~l~lE 152 (279)
T TIGR00542 96 MEKAIQLARDLGIRTIQLA-----GYDVYYEEHDEETRRR-----FREGLKEAVELAARA--QVTLAVE 152 (279)
T ss_pred HHHHHHHHHHhCCCEEEec-----CcccccCcCCHHHHHH-----HHHHHHHHHHHHHHc--CCEEEEe
Confidence 3688999999999998762 2111111111 00110 124578999999999 9999984
No 182
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=21.16 E-value=3.7e+02 Score=27.00 Aligned_cols=90 Identities=11% Similarity=0.092 Sum_probs=55.3
Q ss_pred HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcccccCccccCccC
Q psy110 190 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKA 269 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~ 269 (358)
++.+.++|++.+-+.+. .+ .-|.+.+.++.+|+. |+++.+...--..+
T Consensus 93 l~~a~~~gvd~iri~~~-----------~~----------e~d~~~~~i~~ak~~--G~~v~~~l~~s~~~--------- 140 (333)
T TIGR03217 93 LKAAYDAGARTVRVATH-----------CT----------EADVSEQHIGMAREL--GMDTVGFLMMSHMT--------- 140 (333)
T ss_pred HHHHHHCCCCEEEEEec-----------cc----------hHHHHHHHHHHHHHc--CCeEEEEEEcccCC---------
Confidence 68899999998877652 22 126899999999999 99987665421111
Q ss_pred CCCCchHHhhhhhHHHHHHHHhcCCCCEEE-EeCCCCCCccccChHHHHHHHHh
Q psy110 270 NNFTTNQFVTMKTLPELIEIVQKYQPEVIW-SDGEWEAPAEYWKSREFLAWLYN 322 (358)
Q Consensus 270 ~~~~~~~y~~~~~~~Ql~ELi~rY~PDilW-fDg~w~~p~~~~~~~e~~a~~yn 322 (358)
+. +++..+.+ ++..|++|.|. .|......+ .+..+++..++.
T Consensus 141 ----~~----e~l~~~a~-~~~~~Ga~~i~i~DT~G~~~P--~~v~~~v~~l~~ 183 (333)
T TIGR03217 141 ----PP----EKLAEQAK-LMESYGADCVYIVDSAGAMLP--DDVRDRVRALKA 183 (333)
T ss_pred ----CH----HHHHHHHH-HHHhcCCCEEEEccCCCCCCH--HHHHHHHHHHHH
Confidence 11 22334444 45678998764 465433322 234566666654
No 183
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=20.73 E-value=2.3e+02 Score=29.03 Aligned_cols=56 Identities=20% Similarity=0.242 Sum_probs=38.4
Q ss_pred CCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEE
Q psy110 183 FFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGL 252 (358)
Q Consensus 183 ~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~Gl 252 (358)
..|+.+.++.++++|++.|-+ |.+. +||-... ..-....++++.+++++. ||++..
T Consensus 31 ~~~~~e~i~~la~~GfdgVE~---~~~d--l~P~~~~-------~~e~~~~~~~lk~~L~~~--GL~v~~ 86 (382)
T TIGR02631 31 ALDPVEAVHKLAELGAYGVTF---HDDD--LIPFGAP-------PQERDQIVRRFKKALDET--GLKVPM 86 (382)
T ss_pred CcCHHHHHHHHHHhCCCEEEe---cccc--cCCCCCC-------hhHHHHHHHHHHHHHHHh--CCeEEE
Confidence 369999999999999998854 2222 2332222 000124489999999999 999765
No 184
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=20.69 E-value=2.9e+02 Score=27.60 Aligned_cols=53 Identities=17% Similarity=0.391 Sum_probs=32.9
Q ss_pred HHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhh-cCCceEEEeeCcccc
Q psy110 187 NHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRK-YSDIHFGLYHSLYEW 259 (358)
Q Consensus 187 deWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~-~~GLk~GlYyS~~DW 259 (358)
++-+++|+++|. ||||.|- -|- + ++.|+.+-++...+. .++|+|++-..-.+|
T Consensus 61 ~~Q~~lA~~~GI----------~gF~~~~-----Ywf----~-gk~lLe~p~~~~l~~~~~d~pFcl~WAN~~w 114 (345)
T PF14307_consen 61 EKQAELAKEYGI----------DGFCFYH-----YWF----N-GKRLLEKPLENLLASKEPDFPFCLCWANENW 114 (345)
T ss_pred HHHHHHHHHhCC----------CEEEEEe-----eec----C-CchHHHHHHHHHHhcCCCCCcEEEEECCChh
Confidence 567899999997 5566542 222 1 345665555555422 137888998876666
No 185
>PRK13870 transcriptional regulator TraR; Provisional
Probab=20.67 E-value=99 Score=29.24 Aligned_cols=66 Identities=9% Similarity=0.089 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCC-CCCCChHHHHHHHHHhhcCCceEEEeeCccc
Q psy110 186 ANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDI-GPKRDLVGELATAIRRKYSDIHFGLYHSLYE 258 (358)
Q Consensus 186 pdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~-gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~D 258 (358)
|++|++.+.+-+.-.+=+|.+|.-.-. ....|..... .....-.+++.+.+++. ||+-|+.....+
T Consensus 54 P~~W~~~Y~~~~y~~~DPvv~~~~~~~-----~p~~W~~~~~~~~~~~~~~~~~~~a~~~--Gl~~G~tiPi~~ 120 (234)
T PRK13870 54 HREWQSVYFDKKFDALDPVVKRARSRK-----HIFTWSGEQERPRLSKDERAFYAHAADF--GIRSGITIPIKT 120 (234)
T ss_pred CHHHHHHHHHCCCcccChHHHHHhcCC-----CCeecCcccccccCCHHHHHHHHHHHHc--CCCCceEEEEEC
Confidence 588999999988888888777642111 1123432211 11112346899999999 999999887643
No 186
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=20.42 E-value=1.7e+02 Score=30.96 Aligned_cols=76 Identities=9% Similarity=0.075 Sum_probs=42.4
Q ss_pred HHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceEEEeeCcccccCccccCccC
Q psy110 190 ADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKA 269 (358)
Q Consensus 190 a~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~GlYyS~~DW~~p~y~~d~~ 269 (358)
++++++.|++..=+..... -+.|.-.. ..++. -.-+...+++++|+++ ||+..+-..+ |-.|.+..++.
T Consensus 77 i~l~~~lG~~~yR~si~Ws---Ri~P~g~~---~~~n~-~~~~~Y~~~i~~l~~~--gi~p~VtL~H--~~~P~~l~~~~ 145 (474)
T PRK09852 77 IALMAEMGFKVFRTSIAWS---RLFPQGDE---LTPNQ-QGIAFYRSVFEECKKY--GIEPLVTLCH--FDVPMHLVTEY 145 (474)
T ss_pred HHHHHHcCCCeEEeeceee---eeeeCCCC---CCCCH-HHHHHHHHHHHHHHHc--CCEEEEEeeC--CCCCHHHHHhc
Confidence 5799999998776655433 12222111 00010 0357888999999999 9998653332 22344443333
Q ss_pred CCCCchH
Q psy110 270 NNFTTNQ 276 (358)
Q Consensus 270 ~~~~~~~ 276 (358)
+.+...+
T Consensus 146 GGW~~~~ 152 (474)
T PRK09852 146 GSWRNRK 152 (474)
T ss_pred CCCCCHH
Confidence 4454433
No 187
>cd08071 MPN_DUF2466 Mov34/MPN/PAD-1 family. Mov34 DUF2466 (also known as DNA repair protein RadC) domain of unknown function contains the signature JAB1/MPN/Mov34 metalloenzyme (JAMM) motif, EXnHS/THX7SXXD, which is involved in zinc ion coordination and provides the active site for isopeptidase activity. However, to date, the name RadC has been misleading and no function has been determined.
Probab=20.14 E-value=1.9e+02 Score=24.45 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=46.1
Q ss_pred CCCCCCHHHHHHHHHHcCCcEEEEeeeccCCCccCCCCCCCCccccCCCCCCChHHHHHHHHHhhcCCceE
Q psy110 180 TAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHF 250 (358)
Q Consensus 180 np~~FDpdeWa~lak~AGAKYvVlTaKHHDGFaLWdSk~t~~~ns~~~gpkRDlV~Ela~A~Rk~~~GLk~ 250 (358)
+...-+|.+..+.+-..+|..+|++=.|-.|-+ -||+. ...+.+.+.+||+.- ||++
T Consensus 42 ~~~~v~~R~i~~~aL~~~A~~vil~HNHPsG~~-~PS~~-----------D~~~T~~l~~~~~~l--~i~l 98 (113)
T cd08071 42 NSSLVHPREIFKEALRHNAAAIILAHNHPSGDP-TPSRE-----------DIELTKRLKEAGELL--GIRL 98 (113)
T ss_pred cceecCHHHHHHHHHHHhhheEEEEeeCCCCCC-CCCHH-----------HHHHHHHHHHHHHHC--CCEE
Confidence 556789999999999999999999999986643 22221 346788999999999 9987
Done!