RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy110
(358 letters)
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase
family 29; 1.73A {Bacteroides thetaiotaomicron} PDB:
2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Length = 450
Score = 290 bits (745), Expect = 1e-95
Identities = 68/262 (25%), Positives = 109/262 (41%), Gaps = 19/262 (7%)
Query: 106 KYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWENPNSTVTKFMERN 165
KY T E P + + ++G FIHWG++++P EW K + +
Sbjct: 5 KYGATNEGKRQDPAMQKFRDNRLGAFIHWGLYAIPG--GEWNGKVYGGAAEWL---KSWA 59
Query: 166 YKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSM 225
P + + FDA WA + G KYV +T+KHHEG+ LWPSKY +
Sbjct: 60 KVPADEWLKLMDQWNPTKFDAKKWAKMAKEMGTKYVKITTKHHEGFCLWPSKYT-KYTVA 118
Query: 226 DIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTM--KTL 283
+ KRD++GEL A + I Y S+ +W NP Y D + + F T
Sbjct: 119 NTPYKRDILGELVKAYNDE--GIDVHFYFSVMDWSNPDYRYDIKSKEDSIAFSRFLEFTD 176
Query: 284 PELIEIVQKYQP-EVIWSDGEWEAPAEY-----WKSREFLAWLYNESPVKNTVVVNDRWC 337
+L E+ +Y + W DG W+A + + + L L + + + +D+
Sbjct: 177 NQLKELATRYPTVKDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGVAINSRLRADDKGK 236
Query: 338 NTCLCK---HGGYLTCEDKYNP 356
G Y + ++ P
Sbjct: 237 RHFDSNGRLMGDYESGYERRLP 258
>2zxd_A Alpha-L-fucosidase, putative; TIM barrel, hydrolase; HET: ZXD;
2.15A {Thermotoga maritima} PDB: 2zwy_A* 2zx5_A* 2zx6_A*
2zx7_A* 2zwz_A* 2zx9_A* 2zxa_A* 2zxb_A* 2zx8_A* 1hl9_A*
1hl8_A* 1odu_A* 2wsp_A*
Length = 455
Score = 221 bits (565), Expect = 8e-69
Identities = 93/278 (33%), Positives = 137/278 (49%), Gaps = 36/278 (12%)
Query: 106 KYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSF--------------------RSE 145
+Y P WESL +P W+D+AK GIFIHWG++SVP + +E
Sbjct: 7 RYKPDWESLREHTVPKWFDKAKFGIFIHWGIYSVPGWATPTGELGKVPMDAWFFQNPYAE 66
Query: 146 WFWKNWENPNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTS 205
W+ + S ++ + Y F Y+ FA FTAE +D WAD+ +GAKYV+ T+
Sbjct: 67 WYENSLRIKESPTWEYHVKTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTT 126
Query: 206 KHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFN---- 261
KHH+G+ LW +KY +NS+ GPKRDLVG+LA A+R + FG+Y+S +
Sbjct: 127 KHHDGFCLWGTKYT-DFNSVKRGPKRDLVGDLAKAVREA--GLRFGVYYSGGLDWRFTTE 183
Query: 262 -PLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWL 320
Y +D + +++E+V Y P+V+W+D W + + A+
Sbjct: 184 PIRYPEDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNDMGWPEKGK-EDLKYLFAYY 242
Query: 321 YNESPVKNTVVVNDRWCNTCLCKHGGYLTCEDKYNPVG 358
YN+ P VNDRW H + T E N G
Sbjct: 243 YNKHP---EGSVNDRWGV----PHWDFKTAEYHVNYPG 273
>3gza_A Putative alpha-L-fucosidase; NP_812709.1, structural genomic center
for structural genomics, JCSG; HET: MSE EPE; 1.60A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 443
Score = 182 bits (463), Expect = 8e-54
Identities = 38/264 (14%), Positives = 76/264 (28%), Gaps = 36/264 (13%)
Query: 100 AVPRDFKYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWENPNSTVT 159
+ VP L + EA++G H+ + + N
Sbjct: 1 GAQQQELPVPKPHQL-------KWHEAEMGAVFHYDLHVFDG--IRYGQGNNRIN----- 46
Query: 160 KFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKY- 218
+ F + + W ++G K+ VLT+ H G+ LW S
Sbjct: 47 ------------PIEDYNIFNPTELNTDQWVQAAKAAGCKFAVLTATHETGFGLWQSDVN 94
Query: 219 AFSWNSMD-IGPKRDLVGELATAIRRKYSDIHFGLYHSLYEW-----FNPLYVQDKANNF 272
+ ++ K D+V + + R+ + G+Y + N + A
Sbjct: 95 PYCLKAVKWRDGKGDIVRDFVNSCRKY--GLQPGIYIGIRWNSLLGIHNFKAEGEGAFAR 152
Query: 273 TTNQFVTMKTLPELIEIVQKYQP-EVIWSDGEWEAPAEYWKSREFLAWLYNESPVKNTVV 331
+ + E+ +Y +IW DG + P E + Y + + +
Sbjct: 153 NRQAWYKRLCEKMVTELCTRYGDLYMIWFDGGADDPRADGPDVEPIVNKYQPNCLFYHNI 212
Query: 332 VNDRWCNTCLCKHGGYLTCEDKYN 355
+ C +
Sbjct: 213 DRADFRWGGSETGTVEYPCWSTFP 236
>3eyp_A Putative alpha-L-fucosidase; structural genomics, hydrolase,
lipoprotein, PSI-2, protein initiative; 1.90A
{Bacteroides thetaiotaomicron}
Length = 469
Score = 175 bits (446), Expect = 4e-51
Identities = 43/253 (16%), Positives = 76/253 (30%), Gaps = 44/253 (17%)
Query: 107 YVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWENPNSTVTKFMERNY 166
VP+ L WY+ ++ F H+G+ +
Sbjct: 8 LVPSARQL------EWYN-REMIAFFHFGINTFEE-YVNEGD------------------ 41
Query: 167 KPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYA--FSWNS 224
+ F D W L ++G +LT+KH +G+ LWPSKY N+
Sbjct: 42 -----GKASTAIFNPTALDCRQWMQTLKAAGIPAAILTAKHADGFCLWPSKYTDYSVKNA 96
Query: 225 MDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLP 284
K D+V E A + G+Y ++ L +
Sbjct: 97 AWKNGKGDVVREFVDACEEY--GLKAGIYLGPHDRHEHLSPLYTTERYKE------YYAH 148
Query: 285 ELIEIVQKY-QPEVIWSDGEWEAPAEYWKSREFLAWLYNESPVKNTVVVNDRWCNTCLCK 343
+L E++ Y + W DG R + + + P + V+ +
Sbjct: 149 QLGELMSDYGKIWETWWDGAGADELTTPVYRHWYKIVREKQP--DCVIFGTKNSYPFADV 206
Query: 344 HGGYLTCEDKYNP 356
+ +P
Sbjct: 207 RWMGNEAGEAGDP 219
>3ues_A Alpha-1,3/4-fucosidase; TIM barrel, hydrolase-hydrolase inhibitor
complex; HET: DFU; 1.60A {Bifidobacterium longum subsp}
PDB: 3mo4_A* 3uet_A*
Length = 478
Score = 159 bits (404), Expect = 5e-45
Identities = 56/261 (21%), Positives = 98/261 (37%), Gaps = 51/261 (19%)
Query: 94 PASAPLAVPRDFKYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWEN 153
PA A + + P+ L + ++ F+H+G+ ++ EW
Sbjct: 4 PADAGINLNYLANVRPSSRQL-------AWQRMEMYAFLHFGMNTMTD--REW------- 47
Query: 154 PNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTSKHHEGYTL 213
G ++D F D + W D L + G V+LT KHH+G+ L
Sbjct: 48 ---------------GLGHED-PALFNPRNVDVDQWMDALVAGGMAGVILTCKHHDGFCL 91
Query: 214 WPSKYAF--SWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANN 271
WPS+ +S K DLV E++ + RR + FG+Y S ++ Y + KA +
Sbjct: 92 WPSRLTRHTVASSPWREGKGDLVREVSESARRH--GLKFGVYLSPWDRTEESYGKGKAYD 149
Query: 272 FTTNQFVTMKTLPELIEIVQKYQPEV-IWSDGEWEAPA----EYWKSREFLAWLYNESP- 325
+ +L E++ +Y P +W DG +Y+ + + + P
Sbjct: 150 --------DFYVGQLTELLTQYGPIFSVWLDGANGEGKNGKTQYYDWDRYYNVIRSLQPD 201
Query: 326 -VKNTVVVNDRWCNTCLCKHG 345
V + + RW
Sbjct: 202 AVISVCGPDVRWAGNEAGHVR 222
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 3e-06
Identities = 52/384 (13%), Positives = 110/384 (28%), Gaps = 122/384 (31%)
Query: 28 QPGAPNKV---NSTNAKPRDDAFQILQSITANGEGHQSANVKFLETIK-NIESANDILTK 83
Q K+ N N + ++LQ + + + ++ IK I S L +
Sbjct: 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236
Query: 84 LILSEKGLDMPASAPLAVPRDFKYVPTWESLDAR-------------------------- 117
L+ S+ + L V + + W + +
Sbjct: 237 LLKSKPYENC-----LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291
Query: 118 --PLPAWYDEAKVGIFIHW---GVFSVPS---------------FRSEWF--WKNWENPN 155
+ + + + +P + W NW++ N
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351
Query: 156 -STVTKFMERNY---KPGFT---YQDFAKDFTAEFF--DAN--------HWADILASSGA 198
+T +E + +P + + F A+ W D++ S
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLS------VFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 199 KYVVLTSKHHEGYTL---WPSKYAFSWNS--MDIGPKRDLVGELATAIRRKYSDI----- 248
V K Y+L P + S S +++ K + L +I Y+
Sbjct: 406 VVVNKLHK----YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 249 --------------HFGLYH-------SLYEWFNPLY-----VQDKANNFTTNQFVTMKT 282
H G +H F ++ ++ K + +T +
Sbjct: 462 DDLIPPYLDQYFYSHIG-HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
Query: 283 LPELIEIVQKYQPEVIWSDGEWEA 306
L L ++ + Y+P + +D ++E
Sbjct: 521 LNTLQQL-KFYKPYICDNDPKYER 543
Score = 33.3 bits (75), Expect = 0.12
Identities = 34/228 (14%), Positives = 60/228 (26%), Gaps = 59/228 (25%)
Query: 147 FWKNWENPNSTVTKFME----RNYK---PGFTYQDFAKDFTAEFFDANHWADILASSG-- 197
FW V KF+E NYK + + D L +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR--DRLYNDNQV 125
Query: 198 -AKYVVLTSKHHEG-----YTLWPSKYAFSWNSMD-IGPKRDLVGELA--TAIRRKYSD- 247
AKY V + + L P+K + + G K + ++ ++ K
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLI-DGVLGSG-KTWVALDVCLSYKVQCKMDFK 183
Query: 248 ---IHFGLYHS---LYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSD 301
++ +S + E L Q N T++ + I +Q
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPN--WTSRSDHSSNIKLRIHSIQA--------- 232
Query: 302 GEWEAPAEYWKSREFLAWLYNESPVKNTVVVNDRWCNTCL------CK 343
R + Y +V+ + CK
Sbjct: 233 ---------ELRRLLKSKPYENC----LLVLLNVQNAKAWNAFNLSCK 267
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 45.0 bits (106), Expect = 3e-05
Identities = 48/275 (17%), Positives = 82/275 (29%), Gaps = 90/275 (32%)
Query: 6 VTILFFILSCAQGIYSAVKPVPQPGAPNKVNSTNAKPRDDAFQILQSITANGEGHQS--- 62
+T+LFFI Y P P P IL+ N EG S
Sbjct: 300 ITVLFFIGVRCYEAY------PNTSLP---------P-----SILEDSLENNEGVPSPML 339
Query: 63 --ANVKFLETIKNIESANDILTKLILSEKGLDMPASAPLAV-----PRDFKYV----PTW 111
+N+ + + N L PA + + ++ V P
Sbjct: 340 SISNLTQEQVQDYVNKTNSHL------------PAGKQVEISLVNGAKNL--VVSGPP-- 383
Query: 112 ESLDA-----RPL--PAWYDEAKVG------IFIHWGVF---SVPSFRSEWFWKNWENPN 155
+SL R P+ D++++ F + F + P F S
Sbjct: 384 QSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN--RFLPVASP-FHSHLL-------V 433
Query: 156 STVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADI--LASSGAKYVV--LTSKH-HEG 210
+ K ++ AKD +D +D+ L+ S ++ +V +
Sbjct: 434 PASDLINKDLVKNNVSFN--AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVK-- 489
Query: 211 YTLWPSKYAFSWNSM-DIGPKRDL-VGELATAIRR 243
W + F + D GP +G L +
Sbjct: 490 ---WETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Score = 36.6 bits (84), Expect = 0.016
Identities = 38/270 (14%), Positives = 69/270 (25%), Gaps = 102/270 (37%)
Query: 114 LDA---RPLPAWYDEAKVGIFI---HWGVFSV--PSFR------SEWFWKNWENPNST-- 157
+DA RPL + + + + + + S F +E F + + P +
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAAD-DEPTTPAE 59
Query: 158 -VTKFMERNYKPGFT-----------YQDFAK----DFTAEFFDANHWADI--LASS--- 196
V KF+ G+ + +F + + N DI LA+
Sbjct: 60 LVGKFL------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN---DIHALAAKLLQ 110
Query: 197 ------GAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIH- 249
++ + Y + + L A+ + +
Sbjct: 111 ENDTTLVKTKELIKN------------YITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 250 -FGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVI---------- 298
FG Q T EL ++ Q Y V
Sbjct: 159 IFG-----------------------GQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETL 195
Query: 299 --WSDGEWEAPAEYWKSREFLAWLYNESPV 326
+A + + L WL N S
Sbjct: 196 SELIRTTLDAEKVFTQGLNILEWLENPSNT 225
Score = 32.3 bits (73), Expect = 0.27
Identities = 49/353 (13%), Positives = 93/353 (26%), Gaps = 163/353 (46%)
Query: 20 YSAV----KPVPQPGAP---NKVNSTNAK---------PRDDAFQILQSITANGEGHQSA 63
+A +P + V NA+ DD F+ L+ +
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV---- 182
Query: 64 NVKFLETIKNIESANDILTKLILSE--------KGLDM----------P-----ASAPLA 100
+ + I+ + + L++LI + +GL++ P S P++
Sbjct: 183 ---LVGDL--IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 101 VP--------------RDFKYVP---------------------------TWESLDARPL 119
P + + P +WES
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES------ 291
Query: 120 PAWYDEAKVGI---FIHW-GV-----FSVPSFRSEWFWKNWENPNSTVTKFM--ERNYKP 168
++ + I F + GV + S + EN + M N
Sbjct: 292 --FFVSVRKAITVLF--FIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-PMLSISNLTQ 346
Query: 169 GFTYQDFAKDFTAEFFDANHWADILAS--SGAKYVVLTSKHHEGYTLWPSKYAFSWNSMD 226
QD+ + + S +GAK +V++
Sbjct: 347 EQV-QDYVNKTNSHLPAGKQ---VEISLVNGAKNLVVS---------------------- 380
Query: 227 IGPKRDLVGELATAIRR------------KYSD--IHFGL--------YHSLY 257
GP + L G L +R+ +S+ + F +HS
Sbjct: 381 -GPPQSLYG-LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL 431
Score = 32.3 bits (73), Expect = 0.32
Identities = 55/391 (14%), Positives = 103/391 (26%), Gaps = 147/391 (37%)
Query: 43 RDDAFQILQSITANGEGH--QSANV----KFLETI------KNIESANDILTKLILSE-- 88
++ +IL T + KFL + + + +L L L+E
Sbjct: 34 QEQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL-NLCLTEFE 92
Query: 89 ----KGLD-------MPASAPLAVPRDFKYVPTW---ESLDARPLP-----AWYDEAKVG 129
+G D + + + + + + + RP A + G
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEG 152
Query: 130 IFIHWGVFSVPSF----RSEWFWKNWENPNSTVTKFME-RN-YKPGFTYQDFAKDFTAEF 183
+ ++ F ++ +++ E R+ Y+ TY D
Sbjct: 153 NA---QLVAI--FGGQGNTDDYFE-------------ELRDLYQ---TYHVLVGDLIKFS 191
Query: 184 ---------------------FDANHW---------ADILASSG-----------AKYVV 202
+ W D L S A YVV
Sbjct: 192 AETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Query: 203 LTSKHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATA----------IRRKYSDIHF-- 250
G+T P + G + LV +A A RK + F
Sbjct: 252 TAKLL--GFT--PGELRSYLKGA-TGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI 306
Query: 251 GLY-HSLY--EWFNPLYVQDKANN---FTTNQF----VTMKTLPELIEIVQKYQPEVIWS 300
G+ + Y P ++D N + +T + + + + + P
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPA---- 362
Query: 301 DGEWEAPAEYWKSREFLAWLYNESPVKNTVV 331
+ ++ L N KN VV
Sbjct: 363 -----------GKQVEIS-LVN-GA-KNLVV 379
Score = 30.4 bits (68), Expect = 1.2
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 35/141 (24%)
Query: 194 ASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDI---GPKRDLV---GELATAIRRKYSD 247
S A+ V + +H + Y FS +DI P + GE IR YS
Sbjct: 1638 TSKAAQDVWNRADNH-----FKDTYGFS--ILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 248 IHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQP----------EV 297
+ ++ ++ + K N + T ++ L+ Q QP E
Sbjct: 1691 M---IFETIVDGKLKTEKIFKEINEHSTS-YTFRSEKGLLSATQFTQPALTLMEKAAFED 1746
Query: 298 IWSDGEWEAPA--------EY 310
+ S G A A EY
Sbjct: 1747 LKSKGLIPADATFAGHSLGEY 1767
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.016
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 12/34 (35%)
Query: 69 ETIKNIESANDILTKLILSEKGLDMPASAP-LAV 101
+ +K ++++ L KL SAP LA+
Sbjct: 20 QALKKLQAS---L-KLY-------ADDSAPALAI 42
Score = 28.4 bits (62), Expect = 2.4
Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 23/50 (46%)
Query: 281 KTLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWLYNESPVKNTV 330
+ L +L ++ Y + APA LA +K T+
Sbjct: 20 QALKKLQASLKLYADD--------SAPA--------LA-------IKATM 46
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint
center for structural genomics, J protein structure
initiative; HET: MSE PXL; 2.00A {Bacteroides
thetaiotaomicron} PDB: 3mbj_A*
Length = 291
Score = 30.3 bits (69), Expect = 0.94
Identities = 5/26 (19%), Positives = 12/26 (46%)
Query: 185 DANHWADILASSGAKYVVLTSKHHEG 210
+ + +L+ G + V++TS
Sbjct: 166 ELKEYLRLLSDKGPQVVIITSVPVHD 191
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for
structural genomics of infec diseases, csgid,
transferase; HET: MSE; 1.89A {Yersinia pestis} PDB:
1td2_A* 1vi9_A*
Length = 289
Score = 30.1 bits (68), Expect = 0.99
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 185 DANHWADILASSGAKYVVLTSKHHEGY 211
A A L + G K V++ GY
Sbjct: 165 QAVQVARSLCARGPKVVLVKHLSRAGY 191
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal
5'-phosphate, vitamin B6, phosphorylation, transferase;
2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Length = 283
Score = 28.4 bits (64), Expect = 3.1
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 185 DANHWADILASSGAKYVVLTSKHHEG 210
A A L S K+VV+TS
Sbjct: 176 SAIAAAKSLLSDTLKWVVVTSASGNE 201
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A
{Trypanosoma brucei}
Length = 300
Score = 28.6 bits (64), Expect = 3.1
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 185 DANHWADILASSGAKYVVLTSKHHEG 210
A AD + G +V++ S +
Sbjct: 166 SAILAADWFHNCGVAHVIIKSFREQE 191
>1k1x_A 4-alpha-glucanotransferase; 2.40A {Thermococcus litoralis} SCOP:
a.8.3.2 b.30.5.8 c.6.2.2 PDB: 1k1w_A 1k1y_A*
Length = 659
Score = 28.4 bits (63), Expect = 4.7
Identities = 26/164 (15%), Positives = 45/164 (27%), Gaps = 42/164 (25%)
Query: 173 QDFAKDF--------TAEFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNS 224
+D+A+ E L +G +YVV+ H L + + + +
Sbjct: 106 KDYARKLGYDAKGVWLTERVWQPELVKSLREAGIEYVVVDDYHFMSAGLSKEELFWPYYT 165
Query: 225 MDIGPKRDLVGELATAIRRKYSD-IHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTL 283
D G + I K I F E+ L D
Sbjct: 166 EDGGEVITVF-----PIDEKLRYLIPFRPVKKTIEYLESLTSDDP--------------- 205
Query: 284 PELIEIVQKYQPEVIWSDGE----WEAPAEYWKSREFLAWLYNE 323
++ V DGE W E+ + +L ++
Sbjct: 206 SKVA---------VFHDDGEKFGVWPGTYEWVYEKGWLREFFDA 240
>1yq9_H Periplasmic [NIFE] hydrogenase large subunit; oxidoreductase; 2.35A
{Desulfovibrio gigas} SCOP: e.18.1.1 PDB: 2frv_L 1frv_B
Length = 536
Score = 28.2 bits (62), Expect = 4.8
Identities = 6/46 (13%), Positives = 14/46 (30%)
Query: 68 LETIKNIESANDILTKLILSEKGLDMPASAPLAVPRDFKYVPTWES 113
++ + + L KL + K P + + V +
Sbjct: 416 IQCLTAAQEVEVWLDKLEANVKAGKDDLYTDWQYPTESQGVGFVNA 461
>2h78_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC6014, pseudomonas
aeruginosa PA01, PSI-2, structural genomics; HET: PG4;
2.20A {Pseudomonas aeruginosa} PDB: 3cum_A 3obb_A*
3q3c_A*
Length = 302
Score = 27.6 bits (62), Expect = 6.2
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 154 PNSTVTKFMERNYKPGFTYQDFAKD 178
P R+Y GF Q AKD
Sbjct: 225 PGVMENAPASRDYSGGFMAQLMAKD 249
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A
{Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A*
1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A
2lf1_A*
Length = 162
Score = 26.7 bits (60), Expect = 8.6
Identities = 7/11 (63%), Positives = 8/11 (72%)
Query: 110 TWESLDARPLP 120
T+ES RPLP
Sbjct: 45 TYESFPKRPLP 55
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.436
Gapped
Lambda K H
0.267 0.0638 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,667,124
Number of extensions: 327784
Number of successful extensions: 843
Number of sequences better than 10.0: 1
Number of HSP's gapped: 809
Number of HSP's successfully gapped: 32
Length of query: 358
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 263
Effective length of database: 4,049,298
Effective search space: 1064965374
Effective search space used: 1064965374
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.3 bits)