RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy110
(358 letters)
>d1hl9a2 c.1.8.11 (A:7-356) Putative alpha-L-fucosidase, catalytic
domain {Thermotoga maritima [TaxId: 2336]}
Length = 350
Score = 209 bits (533), Expect = 1e-65
Identities = 91/277 (32%), Positives = 132/277 (47%), Gaps = 34/277 (12%)
Query: 106 KYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSF--------------------RSE 145
+Y P WESL +P W+D+AK GIFIHWG++SVP + +E
Sbjct: 1 RYKPDWESLREHTVPKWFDKAKFGIFIHWGIYSVPGWATPTGELGKVPMDAWFFQNPYAE 60
Query: 146 WFWKNWENPNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDANHWADILASSGAKYVVLTS 205
W+ + S ++ + Y F Y+ FA FTAE +D WAD+ +GAKYV+ T+
Sbjct: 61 WYENSLRIKESPTWEYHVKTYGENFEYEKFADLFTAEKWDPQEWADLFKKAGAKYVIPTT 120
Query: 206 KHHEGYTLWPSKYAFSWNSMDIGPKRDLVGELATAIRRKYSDIHFGLYHSLYEWFN---- 261
KHH+G+ LW +KY +NS+ GPKRDLVG+LA A+ R+ Y +W
Sbjct: 121 KHHDGFCLWGTKYT-DFNSVKRGPKRDLVGDLAKAV-REAGLRFGVYYSGGLDWRFTTEP 178
Query: 262 PLYVQDKANNFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWLY 321
Y +D + +++E+V Y P+V+W+D W + A+ Y
Sbjct: 179 IRYPEDLSYIRPNTYEYADYAYKQVMELVDLYLPDVLWNDMGWPEKG-KEDLKYLFAYYY 237
Query: 322 NESPVKNTVVVNDRWCNTCLCKHGGYLTCEDKYNPVG 358
N+ P VNDRW H + T E N G
Sbjct: 238 NKHPE---GSVNDRWG----VPHWDFKTAEYHVNYPG 267
>d1tz7a1 c.1.8.1 (A:1-485) Amylomaltase MalQ {Aquifex aeolicus
[TaxId: 63363]}
Length = 485
Score = 31.9 bits (72), Expect = 0.10
Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 6/98 (6%)
Query: 185 DANHWADILASSGAKYVVLTSKHHEGYTLWPSKY----AFSWNSMDIGPKRDLVGE-LAT 239
+A + D L G + + S Y F+ N + I P +L+ E L
Sbjct: 25 EAYRFLDFLKECGFSLWQVLPLNPTSLEAGNSPYSSNSLFAGNYVLIDP-EELLEEDLIK 83
Query: 240 AIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQF 277
K + LY +YE+ L + N
Sbjct: 84 ERDLKRFPLGEALYEVVYEYKKELLEKAFKNFRRFELL 121
>d1rxxa_ d.126.1.4 (A:) Arginine deiminase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 412
Score = 31.7 bits (71), Expect = 0.12
Identities = 23/117 (19%), Positives = 40/117 (34%), Gaps = 7/117 (5%)
Query: 38 TNAKPRDDAFQILQSITAN--GEGHQSANVKFLETIKNIESANDILTKLILSEKGLDMPA 95
T P + + + ITA+ G G S +LE++ + LI D+PA
Sbjct: 74 TIQNPEALKWILDRKITADSVGLGLTSELRSWLESL----EPRKLAEYLIGGVAADDLPA 129
Query: 96 SAPLAVPRDFKYVPTWESLDARPLPAWYDEAKVGIFIHWGVFSVPSFRSEWFWKNWE 152
S + + ++ S PLP +I+ GV + +
Sbjct: 130 SEGANILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVT-LNPMYWPARRQETL 185
>d1k1xa3 c.6.2.2 (A:1-310) 4-alpha-glucanotransferase, N-terminal
domain {Archaeon Thermococcus litoralis [TaxId: 2265]}
Length = 310
Score = 28.5 bits (63), Expect = 1.2
Identities = 26/173 (15%), Positives = 44/173 (25%), Gaps = 44/173 (25%)
Query: 182 EFFDANHWADILASSGAKYVVLTSKHHEGYTLWPSKYAFSWNSMDIGPK----------- 230
E L +G +YVV+ H L + + + + D G
Sbjct: 123 ERVWQPELVKSLREAGIEYVVVDDYHFMSAGLSKEELFWPYYTEDGGEVITVFPIDEKLR 182
Query: 231 --------RDLVGELATAIRRKYSDIH--------FGLYHSLYEWFNPL----YVQDKAN 270
+ + L + S + FG++ YEW D
Sbjct: 183 YLIPFRPVKKTIEYLESLTSDDPSKVAVFHDDGEKFGVWPGTYEWVYEKGWLREFFDAIT 242
Query: 271 NFTTNQFVTMKTLPELIEIVQKYQPEVIWSDGEWEAPAEYWKSREFLAWLYNE 323
+ +T E + K+ P G P + E W
Sbjct: 243 SNEKINLMTYS------EYLSKFTPR-----GLVYLPIASY--FEMSEWSLPA 282
>d1ag9a_ c.23.5.1 (A:) Flavodoxin {Escherichia coli [TaxId: 562]}
Length = 175
Score = 27.0 bits (59), Expect = 2.9
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 136 VFSVPSFRSEWFWKNWENPNSTVTKFMERNYKPGFTYQDFAKDFTAEFFDAN-HWADILA 194
+ +P++ +W++ T+ + +D+ F DA DI+
Sbjct: 50 LLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDALGTIRDIIE 109
Query: 195 SSGAKYVVLTSKHHEGYTLWPSKYAFSWN 223
GA V GY SK +
Sbjct: 110 PRGATIVGHWPT--AGYHFEASKGLADDD 136
>d1t0ia_ c.23.5.4 (A:) Hypothetical protein Ylr011wp {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 185
Score = 26.7 bits (58), Expect = 3.4
Identities = 14/112 (12%), Positives = 33/112 (29%), Gaps = 8/112 (7%)
Query: 231 RDLVGELATAIRRKYSDIHFGLYHSLYE-WFNPLYVQDKANNFTTNQFVTMKTLPELIEI 289
++ + I I L + + L + + + Q ++ +
Sbjct: 17 PEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYAD--SK 74
Query: 290 VQKYQPEVIWSDGEWEAPAEYWKS-----REFLAWLYNESPVKNTVVVNDRW 336
+ + V D +Y + + LY+E K +VV+
Sbjct: 75 TRSWSRIVNALDIIVFVTPQYNWGYPAALKNAIDRLYHEWHGKPALVVSYGG 126
>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio
cholerae [TaxId: 666]}
Length = 401
Score = 27.1 bits (59), Expect = 3.8
Identities = 7/14 (50%), Positives = 8/14 (57%)
Query: 237 LATAIRRKYSDIHF 250
L AI+ SDIH
Sbjct: 32 LGEAIKEGASDIHI 45
>d2qi2a3 d.79.3.2 (A:244-338) Cell division protein pelota
{Thermoplasma acidophilum [TaxId: 2303]}
Length = 95
Score = 25.4 bits (56), Expect = 3.9
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 185 DANHWADILASSGAKYVVLTSKHHEGYTL 213
D I + G + +++ + G +
Sbjct: 53 DGRRSLSIAQTVGTRIHIVSVSNDPGQIV 81
>d1q6wa_ d.38.1.4 (A:) Monoamine oxidase regulatory protein
{Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 151
Score = 25.1 bits (54), Expect = 9.3
Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 1/104 (0%)
Query: 234 VGELATAIRRKYSDIHFGLYHSLYEWFNPLYVQDKANNFTTNQFVTMKTLPELIEIVQKY 293
+GE + R ++ + L F PL+ + T + + L +
Sbjct: 12 IGEKIEGLPRTVTETDIWTFAYLTADFFPLHTDVEFAKKTIFGKPIAQGMLVLSIALGMV 71
Query: 294 QPEVIWSDGEWEAPAEY-WKSREFLAWLYNESPVKNTVVVNDRW 336
++ + A + K FL ++ + + V ++
Sbjct: 72 DQVILSNYDVSSVIAFFGIKDVRFLRPVFIGDTIAASAEVVEKQ 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.436
Gapped
Lambda K H
0.267 0.0399 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,438,659
Number of extensions: 68755
Number of successful extensions: 193
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 15
Length of query: 358
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 272
Effective length of database: 1,226,816
Effective search space: 333693952
Effective search space used: 333693952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.1 bits)