Query psy1100
Match_columns 81
No_of_seqs 160 out of 1343
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 15:38:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1100.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1100hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13252 betaine aldehyde dehy 98.9 4.4E-09 9.5E-14 76.0 7.0 57 19-75 4-60 (488)
2 cd07116 ALDH_ACDHII-AcoD Ralst 98.9 5.8E-09 1.3E-13 75.2 7.0 53 23-75 2-54 (479)
3 cd07091 ALDH_F1-2_Ald2-like AL 98.9 8.7E-09 1.9E-13 74.2 6.9 57 22-78 4-60 (476)
4 KOG2450|consensus 98.8 9.3E-09 2E-13 74.5 6.2 56 23-78 22-77 (501)
5 KOG2451|consensus 98.8 6.1E-09 1.3E-13 74.0 5.0 55 21-75 23-77 (503)
6 PLN02419 methylmalonate-semial 98.8 1.5E-08 3.2E-13 75.4 7.2 57 20-76 112-168 (604)
7 cd07559 ALDH_ACDHII_AcoD-like 98.8 1.2E-08 2.7E-13 73.7 6.6 54 23-76 2-55 (480)
8 PRK11241 gabD succinate-semial 98.8 2E-08 4.3E-13 72.8 7.5 55 22-76 11-65 (482)
9 cd07140 ALDH_F1L_FTFDH 10-form 98.8 1.9E-08 4.1E-13 72.9 7.0 56 22-77 6-61 (486)
10 PLN02278 succinic semialdehyde 98.8 2.6E-08 5.6E-13 72.4 7.5 57 20-76 23-79 (498)
11 cd07117 ALDH_StaphAldA1 Unchar 98.8 2.2E-08 4.9E-13 72.3 7.0 54 23-76 2-55 (475)
12 PLN02766 coniferyl-aldehyde de 98.8 2.5E-08 5.4E-13 72.6 7.2 62 16-77 15-76 (501)
13 cd07082 ALDH_F11_NP-GAPDH NADP 98.8 2.3E-08 5.1E-13 71.9 6.9 54 22-76 2-55 (473)
14 PLN02315 aldehyde dehydrogenas 98.8 1.5E-08 3.2E-13 73.9 5.7 55 20-76 19-73 (508)
15 cd07126 ALDH_F12_P5CDH Delta(1 98.8 1.9E-08 4.1E-13 73.2 6.0 51 25-77 2-52 (489)
16 PRK13473 gamma-aminobutyraldeh 98.8 3.1E-08 6.7E-13 71.3 7.0 55 21-76 2-56 (475)
17 PLN02467 betaine aldehyde dehy 98.8 3.8E-08 8.2E-13 71.7 7.5 53 20-72 6-58 (503)
18 TIGR01238 D1pyr5carbox3 delta- 98.8 1.8E-08 3.9E-13 73.3 5.7 63 12-76 28-91 (500)
19 cd07142 ALDH_F2BC Arabidosis a 98.8 3.4E-08 7.5E-13 71.2 7.1 56 22-77 4-59 (476)
20 cd07144 ALDH_ALD2-YMR170C Sacc 98.8 3.5E-08 7.6E-13 71.3 7.1 55 22-76 8-62 (484)
21 cd07085 ALDH_F6_MMSDH Methylma 98.8 3.3E-08 7.2E-13 71.3 7.0 54 23-76 2-55 (478)
22 cd07125 ALDH_PutA-P5CDH Delta( 98.8 2E-08 4.4E-13 73.2 5.8 73 2-76 7-86 (518)
23 cd07138 ALDH_CddD_SSP0762 Rhod 98.7 3.2E-08 7E-13 71.1 6.8 53 24-76 1-53 (466)
24 TIGR01722 MMSDH methylmalonic 98.7 3.7E-08 8E-13 71.1 7.1 53 23-75 2-54 (477)
25 cd07111 ALDH_F16 Aldehyde dehy 98.7 3.5E-08 7.5E-13 71.5 7.0 56 21-76 21-76 (480)
26 PLN00412 NADP-dependent glycer 98.7 3.8E-08 8.1E-13 71.5 7.1 57 20-76 14-70 (496)
27 PRK09847 gamma-glutamyl-gamma- 98.7 3.8E-08 8.3E-13 71.4 7.0 58 20-77 18-75 (494)
28 TIGR03374 ABALDH 1-pyrroline d 98.7 4E-08 8.8E-13 71.0 6.9 54 22-76 2-55 (472)
29 KOG2452|consensus 98.7 1.4E-08 2.9E-13 74.1 4.2 59 20-78 420-478 (881)
30 TIGR01236 D1pyr5carbox1 delta- 98.7 2.9E-08 6.2E-13 72.8 5.9 66 10-76 20-86 (533)
31 PLN02466 aldehyde dehydrogenas 98.7 7E-08 1.5E-12 70.9 7.8 56 22-77 58-113 (538)
32 cd07113 ALDH_PADH_NahF Escheri 98.7 4.9E-08 1.1E-12 70.5 6.9 52 24-75 2-53 (477)
33 TIGR02299 HpaE 5-carboxymethyl 98.7 4.8E-08 1E-12 70.6 6.6 54 23-76 2-55 (488)
34 cd07143 ALDH_AldA_AN0554 Asper 98.7 6.1E-08 1.3E-12 70.2 7.0 55 22-76 7-62 (481)
35 cd07086 ALDH_F7_AASADH-like NA 98.7 6.2E-08 1.4E-12 69.9 6.2 52 24-76 1-52 (478)
36 PRK09457 astD succinylglutamic 98.7 8.8E-08 1.9E-12 69.4 7.0 53 23-76 2-54 (487)
37 TIGR01804 BADH glycine betaine 98.7 7.1E-08 1.5E-12 69.4 6.3 52 25-76 1-52 (467)
38 cd07141 ALDH_F1AB_F2_RALDH1 NA 98.6 1.2E-07 2.5E-12 68.6 7.2 54 21-74 6-59 (481)
39 TIGR03240 arg_catab_astD succi 98.6 1.1E-07 2.4E-12 68.8 6.7 52 24-76 1-52 (484)
40 cd07088 ALDH_LactADH-AldA Esch 98.6 9.8E-08 2.1E-12 68.5 6.3 52 25-76 1-52 (468)
41 TIGR03216 OH_muco_semi_DH 2-hy 98.6 1.3E-07 2.7E-12 68.4 6.7 51 23-75 2-53 (481)
42 PRK03137 1-pyrroline-5-carboxy 98.6 9.5E-08 2.1E-12 69.6 6.0 56 19-76 34-90 (514)
43 cd07124 ALDH_PutA-P5CDH-RocA D 98.6 1.4E-07 3E-12 68.8 6.1 55 20-76 31-86 (512)
44 cd07123 ALDH_F4-17_P5CDH Delta 98.6 1.9E-07 4.1E-12 68.3 6.8 55 20-76 31-86 (522)
45 cd07128 ALDH_MaoC-N N-terminal 98.6 1.7E-07 3.7E-12 68.6 6.3 51 23-75 2-53 (513)
46 cd07139 ALDH_AldA-Rv0768 Mycob 98.6 2.1E-07 4.5E-12 67.0 6.6 54 24-77 1-54 (471)
47 PRK11563 bifunctional aldehyde 98.6 1.7E-07 3.7E-12 70.4 6.2 54 20-75 3-57 (675)
48 cd07131 ALDH_AldH-CAJ73105 Unc 98.5 2.3E-07 4.9E-12 66.9 6.2 53 24-76 1-54 (478)
49 cd07130 ALDH_F7_AASADH NAD+-de 98.5 2.7E-07 5.9E-12 66.6 6.6 50 25-76 2-51 (474)
50 cd07119 ALDH_BADH-GbsA Bacillu 98.5 2.3E-07 5E-12 67.0 6.1 53 25-77 1-53 (482)
51 COG1012 PutA NAD-dependent ald 98.5 2.5E-07 5.5E-12 67.1 5.6 51 23-75 2-52 (472)
52 TIGR01237 D1pyr5carbox2 delta- 98.5 3E-07 6.5E-12 67.0 5.8 56 19-76 30-86 (511)
53 cd07097 ALDH_KGSADH-YcbD Bacil 98.5 4.4E-07 9.6E-12 65.4 6.2 51 23-75 2-53 (473)
54 cd07083 ALDH_P5CDH ALDH subfam 98.4 7.2E-07 1.6E-11 64.9 6.7 56 19-76 16-72 (500)
55 PRK11903 aldehyde dehydrogenas 98.4 6.7E-07 1.5E-11 65.5 5.7 51 23-75 6-57 (521)
56 TIGR02278 PaaN-DH phenylacetic 98.4 8.9E-07 1.9E-11 66.5 6.3 52 23-76 2-54 (663)
57 cd07151 ALDH_HBenzADH NADP+-de 98.4 1.1E-06 2.3E-11 63.3 6.1 49 28-76 1-49 (465)
58 TIGR03250 PhnAcAld_DH putative 98.3 1.8E-06 4E-11 62.4 5.8 53 22-76 4-56 (472)
59 PF00171 Aldedh: Aldehyde dehy 98.2 3.5E-06 7.6E-11 60.6 5.0 46 30-76 1-46 (462)
60 PRK13968 putative succinate se 98.1 8.9E-06 1.9E-10 58.8 5.5 41 36-76 6-46 (462)
61 cd07148 ALDH_RL0313 Uncharacte 98.0 8.2E-06 1.8E-10 58.7 4.4 37 40-76 2-38 (455)
62 PRK09407 gabD2 succinic semial 98.0 1.7E-05 3.6E-10 58.2 5.8 50 25-76 22-71 (524)
63 cd07109 ALDH_AAS00426 Uncharac 98.0 9.7E-06 2.1E-10 58.2 4.4 39 41-79 1-39 (454)
64 cd07150 ALDH_VaniDH_like Pseud 98.0 1.1E-05 2.4E-10 57.7 4.3 37 40-76 2-38 (451)
65 cd07089 ALDH_CddD-AldA-like Rh 98.0 1.2E-05 2.7E-10 57.8 4.5 38 41-78 1-38 (459)
66 PRK09406 gabD1 succinic semial 97.9 1.8E-05 4E-10 57.1 4.9 38 39-76 3-40 (457)
67 cd07145 ALDH_LactADH_F420-Bios 97.9 2E-05 4.3E-10 56.6 4.3 37 40-76 2-38 (456)
68 cd07147 ALDH_F21_RNP123 Aldehy 97.9 2.2E-05 4.8E-10 56.3 4.2 38 39-76 1-38 (452)
69 cd07094 ALDH_F21_LactADH-like 97.8 2.4E-05 5.3E-10 56.1 4.2 37 40-76 2-38 (453)
70 cd07149 ALDH_y4uC Uncharacteri 97.8 2.9E-05 6.2E-10 55.6 4.2 38 39-76 1-38 (453)
71 PRK11904 bifunctional proline 97.8 4.4E-05 9.5E-10 60.1 5.0 50 21-76 552-602 (1038)
72 cd07112 ALDH_GABALDH-PuuC Esch 97.8 6.4E-05 1.4E-09 54.2 5.3 37 38-74 3-39 (462)
73 cd07106 ALDH_AldA-AAD23400 Str 97.7 5.1E-05 1.1E-09 54.4 4.4 36 41-76 1-36 (446)
74 cd07092 ALDH_ABALDH-YdcW Esche 97.7 5.2E-05 1.1E-09 54.3 4.4 36 41-76 1-36 (450)
75 cd07090 ALDH_F9_TMBADH NAD+-de 97.7 5.2E-05 1.1E-09 54.5 4.4 36 41-76 1-36 (457)
76 cd07110 ALDH_F10_BADH Arabidop 97.7 5.4E-05 1.2E-09 54.4 4.4 36 41-76 1-36 (456)
77 cd07108 ALDH_MGR_2402 Magnetos 97.7 5.6E-05 1.2E-09 54.3 4.4 36 41-76 1-36 (457)
78 cd07107 ALDH_PhdK-like Nocardi 97.7 6E-05 1.3E-09 54.2 4.4 36 41-76 1-36 (456)
79 cd07120 ALDH_PsfA-ACA09737 Pse 97.7 6.3E-05 1.4E-09 54.3 4.3 35 41-75 1-35 (455)
80 TIGR01780 SSADH succinate-semi 97.6 7.8E-05 1.7E-09 53.6 4.4 36 41-76 1-36 (448)
81 cd07103 ALDH_F5_SSADH_GabD Mit 97.6 8.9E-05 1.9E-09 53.1 4.4 36 41-76 1-36 (451)
82 cd07101 ALDH_SSADH2_GabD2 Myco 97.6 8.7E-05 1.9E-09 53.4 4.4 35 42-76 1-35 (454)
83 cd07099 ALDH_DDALDH Methylomon 97.6 0.0001 2.2E-09 52.9 4.4 35 42-76 1-35 (453)
84 cd07093 ALDH_F8_HMSADH Human a 97.6 0.0001 2.2E-09 52.9 4.4 36 41-76 1-36 (455)
85 cd07098 ALDH_F15-22 Aldehyde d 97.6 0.00011 2.3E-09 53.0 4.3 35 42-76 1-35 (465)
86 cd07102 ALDH_EDX86601 Uncharac 97.5 0.00014 2.9E-09 52.2 4.4 35 42-76 1-35 (452)
87 cd07115 ALDH_HMSADH_HapE Pseud 97.5 0.00017 3.6E-09 51.9 4.4 35 42-76 2-36 (453)
88 PRK11905 bifunctional proline 97.5 0.00029 6.3E-09 56.3 5.6 50 24-76 557-607 (1208)
89 cd07118 ALDH_SNDH Gluconobacte 97.4 0.00024 5.2E-09 51.2 4.3 36 42-77 2-37 (454)
90 PRK11809 putA trifunctional tr 97.4 0.0004 8.8E-09 55.9 5.7 41 36-76 658-699 (1318)
91 cd07114 ALDH_DhaS Uncharacteri 97.2 0.0005 1.1E-08 49.5 4.2 34 41-74 1-34 (457)
92 KOG2455|consensus 97.1 0.00043 9.4E-09 50.4 3.0 66 9-76 47-113 (561)
93 cd07127 ALDH_PAD-PaaZ Phenylac 97.1 0.001 2.2E-08 49.4 4.6 38 35-75 63-100 (549)
94 KOG2453|consensus 96.9 0.00083 1.8E-08 47.8 2.6 64 11-76 7-72 (507)
95 KOG2454|consensus 96.8 0.0021 4.6E-08 46.5 4.5 41 36-76 63-103 (583)
96 cd07146 ALDH_PhpJ Streptomyces 96.8 0.0013 2.9E-08 47.4 3.2 32 40-71 2-33 (451)
97 COG4230 Delta 1-pyrroline-5-ca 96.5 0.0031 6.7E-08 47.4 3.4 50 25-76 117-167 (769)
98 TIGR02288 PaaN_2 phenylacetic 96.2 0.0067 1.4E-07 45.2 3.9 34 40-76 68-101 (551)
99 cd07152 ALDH_BenzADH NAD-depen 95.8 0.015 3.3E-07 41.7 4.0 30 47-76 1-30 (443)
100 cd07135 ALDH_F14-YMR110C Sacch 81.4 1.6 3.5E-05 31.6 2.8 21 56-76 2-22 (436)
101 PRK13805 bifunctional acetalde 79.8 1.8 3.8E-05 34.0 2.7 25 52-76 5-29 (862)
102 TIGR02518 EutH_ACDH acetaldehy 74.6 3.1 6.8E-05 30.7 2.6 22 55-76 4-25 (488)
103 cd07049 BMC_EutL_repeat1 ethan 72.9 12 0.00025 22.3 4.3 33 43-75 68-100 (103)
104 PTZ00381 aldehyde dehydrogenas 71.7 4.4 9.5E-05 29.9 2.8 22 55-76 3-24 (493)
105 PLN02203 aldehyde dehydrogenas 70.0 5 0.00011 29.6 2.8 22 55-76 2-23 (484)
106 PLN02174 aldehyde dehydrogenas 65.4 6.4 0.00014 29.1 2.5 22 55-76 6-27 (484)
107 PF07831 PYNP_C: Pyrimidine nu 64.9 6.2 0.00013 21.9 1.9 28 46-73 46-73 (75)
108 PRK15398 aldehyde dehydrogenas 63.9 6.3 0.00014 28.9 2.3 22 55-76 32-53 (465)
109 COG3607 Predicted lactoylgluta 53.7 26 0.00056 21.8 3.4 27 45-71 69-95 (133)
110 PF13132 DUF3950: Domain of un 51.3 9.1 0.0002 17.7 0.9 19 59-77 3-22 (30)
111 smart00876 BATS Biotin and Thi 41.6 43 0.00093 19.0 2.9 35 40-74 3-38 (94)
112 COG0095 LplA Lipoate-protein l 40.6 29 0.00063 23.3 2.4 28 53-80 220-247 (248)
113 PF08793 2C_adapt: 2-cysteine 37.9 15 0.00032 17.7 0.5 12 41-52 11-22 (37)
114 cd06408 PB1_NoxR The PB1 domai 37.0 50 0.0011 19.0 2.7 18 53-70 52-69 (86)
115 COG1856 Uncharacterized homolo 36.3 60 0.0013 22.4 3.3 36 39-74 185-220 (275)
116 COG3360 Uncharacterized conser 34.1 47 0.001 18.4 2.1 25 49-73 11-35 (71)
117 PF07120 DUF1376: Protein of u 33.6 13 0.00027 21.0 -0.2 37 44-80 40-80 (88)
118 PRK15405 ethanolamine utilizat 32.7 1.2E+02 0.0026 20.5 4.2 33 43-75 77-109 (217)
119 PF06968 BATS: Biotin and Thia 30.0 50 0.0011 18.7 2.0 35 40-74 3-37 (93)
120 PLN02418 delta-1-pyrroline-5-c 28.5 52 0.0011 25.7 2.3 18 59-76 294-311 (718)
121 PRK01037 trmD tRNA (guanine-N( 28.4 1E+02 0.0022 22.4 3.6 27 45-71 298-324 (357)
122 TIGR02661 MauD methylamine deh 26.9 1.1E+02 0.0025 19.3 3.4 33 40-73 151-183 (189)
123 PF03725 RNase_PH_C: 3' exorib 26.7 66 0.0014 16.7 2.0 16 56-71 53-68 (68)
124 PF07855 DUF1649: Protein of u 25.0 1.1E+02 0.0024 19.3 3.0 35 42-76 30-67 (163)
125 PF03646 FlaG: FlaG protein; 24.4 1.1E+02 0.0024 17.6 2.8 20 37-56 68-87 (107)
126 PRK13489 chemoreceptor glutami 20.3 1.3E+02 0.0028 20.4 2.8 59 7-66 122-183 (233)
127 PF14246 TetR_C_7: AefR-like t 20.2 1.3E+02 0.0028 14.7 2.3 19 54-72 33-51 (55)
No 1
>PRK13252 betaine aldehyde dehydrogenase; Provisional
Probab=98.92 E-value=4.4e-09 Score=76.03 Aligned_cols=57 Identities=32% Similarity=0.436 Sum_probs=50.8
Q ss_pred ccccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhc
Q psy1100 19 FLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLE 75 (81)
Q Consensus 19 ~~~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~ 75 (81)
++..++||+|+|+.+..+..++++||+||+++++++.++.+|+++++++|++||+.|
T Consensus 4 ~~~~~~~I~G~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~dv~~av~~A~~a~~~w 60 (488)
T PRK13252 4 QPLQSLYIDGAYVEATSGETFEVINPATGEVLATVQAATPADVEAAVASAKQGQKIW 60 (488)
T ss_pred CccccccCCCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 455678999999865445679999999999999999999999999999999999987
No 2
>cd07116 ALDH_ACDHII-AcoD Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane. These proteins apparently require RpoN factors for expression.
Probab=98.89 E-value=5.8e-09 Score=75.24 Aligned_cols=53 Identities=19% Similarity=0.277 Sum_probs=48.1
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLE 75 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~ 75 (81)
++||+|+|+.+..+..++++||+||+.+++++.++.+|++++|++|++||+.|
T Consensus 2 ~~~i~g~~~~~~~~~~~~v~nP~tg~~i~~~~~~~~~dv~~av~~A~~A~~~w 54 (479)
T cd07116 2 DNFIGGEWVAPVKGEYFDNITPVTGKVFCEVPRSTAEDIELALDAAHAAKEAW 54 (479)
T ss_pred CceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999876545679999999999999999999999999999999999987
No 3
>cd07091 ALDH_F1-2_Ald2-like ALDH subfamily: ALDH families 1and 2, including 10-formyltetrahydrofolate dehydrogenase, NAD+-dependent retinal dehydrogenase 1 and related proteins. ALDH subfamily which includes the NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36), also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1), in humans, a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1), in humans, a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the co
Probab=98.86 E-value=8.7e-09 Score=74.20 Aligned_cols=57 Identities=47% Similarity=0.656 Sum_probs=50.8
Q ss_pred cceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcccc
Q psy1100 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVFN 78 (81)
Q Consensus 22 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~~ 78 (81)
.+.||+|+|..+..+..++++||+|++++++++.++.++++.++++|++||+.|.|.
T Consensus 4 ~~~~I~g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~~~w~ 60 (476)
T cd07091 4 TGLFINNEFVDSVSGKTFPTINPATEEVICQVAEADEEDVDAAVKAARAAFETGWWR 60 (476)
T ss_pred ccceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcccCccc
Confidence 457899999865445679999999999999999999999999999999999999774
No 4
>KOG2450|consensus
Probab=98.83 E-value=9.3e-09 Score=74.51 Aligned_cols=56 Identities=45% Similarity=0.633 Sum_probs=51.8
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcccc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVFN 78 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~~ 78 (81)
.+||+|+|.++.+++.+++.||.||++++++..++.+||++|+++|++||+.-.|.
T Consensus 22 ~lfin~e~~~~~s~kt~~~~nP~tg~~i~~v~~~~~~dVd~aV~aAr~Af~~~~W~ 77 (501)
T KOG2450|consen 22 GLFINGEFVDSVSGKTFPVVNPATGEVIAKVAEATEEDVDEAVKAARSAFKLVDWA 77 (501)
T ss_pred heeecCeeecccCCceeeeecCCCCCeEEEeccccHHHHHHHHHHHHHhcCcCccc
Confidence 68999999988777899999999999999999999999999999999999965554
No 5
>KOG2451|consensus
Probab=98.83 E-value=6.1e-09 Score=73.96 Aligned_cols=55 Identities=25% Similarity=0.282 Sum_probs=51.7
Q ss_pred ccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhc
Q psy1100 21 VFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLE 75 (81)
Q Consensus 21 ~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~ 75 (81)
+.+.||+|+|+++..+.+|+|.||++|+.++.++.++.++.++||++|.+||..|
T Consensus 23 ~~~~~igGkWv~s~~~~tF~V~nPa~geii~~V~~~~V~e~~kAI~aA~EaF~s~ 77 (503)
T KOG2451|consen 23 RAQSYIGGKWVDSPDNKTFEVDNPANGEIIGKVADMTVEEAEKAIDAAYEAFKSY 77 (503)
T ss_pred chhccccceeeccCCCCeeeccCCCccchhhcccCCcHHHHHHHHHHHHHHHHHH
Confidence 5678999999998767899999999999999999999999999999999999996
No 6
>PLN02419 methylmalonate-semialdehyde dehydrogenase [acylating]
Probab=98.82 E-value=1.5e-08 Score=75.41 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=50.1
Q ss_pred cccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 20 LVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 20 ~~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
...+.||+|+|..+..+..++++||+|++++++++.++.+|+++||++|++||+.|-
T Consensus 112 ~~~~~~I~G~~~~~~~~~~~~v~nP~tg~~i~~v~~a~~~dv~~Av~aA~~A~~~W~ 168 (604)
T PLN02419 112 PRVPNLIGGSFVESQSSSFIDVINPATQEVVSKVPLTTNEEFKAAVSAAKQAFPLWR 168 (604)
T ss_pred cccceeECCEEecCCCCceEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHhc
Confidence 345678999998764456799999999999999999999999999999999999874
No 7
>cd07559 ALDH_ACDHII_AcoD-like Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like. Included in this CD is the NAD+-dependent, acetaldehyde dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from Ralstonia (Alcaligenes) eutrophus H16 involved in the catabolism of acetoin and ethanol, and similar proteins, such as, the dimeric dihydrolipoamide dehydrogenase of the acetoin dehydrogenase enzyme system of Klebsiella pneumonia. Also included are sequences similar to the NAD+-dependent chloroacetaldehyde dehydrogenases (AldA and AldB) of Xanthobacter autotrophicus GJ10 which are involved in the degradation of 1,2-dichloroethane, as well as, the uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences.
Probab=98.82 E-value=1.2e-08 Score=73.66 Aligned_cols=54 Identities=15% Similarity=0.209 Sum_probs=48.5
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.+||+|+|..+..+..++++||+|++++++++.++.+|++++|++|++||+.|-
T Consensus 2 ~~~I~g~~~~~~~~~~~~v~~P~t~~~~~~~~~~~~~dv~~av~~A~~A~~~w~ 55 (480)
T cd07559 2 DNFINGEWVAPSKGEYFDNYNPVNGKVLCEIPRSTAEDVDLAVDAAHEAFKTWG 55 (480)
T ss_pred CccCCCEEecCCCCCeEEeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 468999998765567899999999999999999999999999999999999873
No 8
>PRK11241 gabD succinate-semialdehyde dehydrogenase I; Provisional
Probab=98.82 E-value=2e-08 Score=72.80 Aligned_cols=55 Identities=24% Similarity=0.246 Sum_probs=49.0
Q ss_pred cceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 22 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
..++|+|+|..+..+..++++||+||+++++++.++.+||++||++|++||+.|.
T Consensus 11 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~v~~~~~~~~~~v~~av~~A~~a~~~W~ 65 (482)
T PRK11241 11 QQALINGEWLDANNGEVIDVTNPANGDKLGSVPKMGADETRAAIDAANRALPAWR 65 (482)
T ss_pred ccceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 3478999998654456799999999999999999999999999999999999874
No 9
>cd07140 ALDH_F1L_FTFDH 10-formyltetrahydrofolate dehydrogenase, ALDH family 1L. 10-formyltetrahydrofolate dehydrogenase (FTHFDH, EC=1.5.1.6), also known as aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in humans, is a multi-domain homotetramer with an N-terminal formyl transferase domain and a C-terminal ALDH domain. FTHFDH catalyzes an NADP+-dependent dehydrogenase reaction resulting in the conversion of 10-formyltetrahydrofolate to tetrahydrofolate and CO2. The ALDH domain is also capable of the oxidation of short chain aldehydes to their corresponding acids.
Probab=98.80 E-value=1.9e-08 Score=72.92 Aligned_cols=56 Identities=32% Similarity=0.446 Sum_probs=49.0
Q ss_pred cceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhccc
Q psy1100 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVF 77 (81)
Q Consensus 22 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~ 77 (81)
.++||+|+|..+..+..++++||+|++++++++.++.+|+++++++|++||+...|
T Consensus 6 ~~~~I~g~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~~W 61 (486)
T cd07140 6 HQLFINGEFVDAEGGKTYNTINPTDGSVICKVSLATVEDVDRAVAAAKEAFENGEW 61 (486)
T ss_pred cCceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCCch
Confidence 45799999987644567999999999999999999999999999999999985333
No 10
>PLN02278 succinic semialdehyde dehydrogenase
Probab=98.79 E-value=2.6e-08 Score=72.37 Aligned_cols=57 Identities=30% Similarity=0.348 Sum_probs=50.3
Q ss_pred cccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 20 LVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 20 ~~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
...++||+|+|+.+..+..++++||+||+++++++.++.++++++|++|++||+.|-
T Consensus 23 ~~~~~~i~g~~~~~~~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~W~ 79 (498)
T PLN02278 23 LRTQGLIGGKWTDAYDGKTFPVYNPATGEVIANVPCMGRAETNDAIASAHDAFPSWS 79 (498)
T ss_pred CcccceECCEEecCCCCCeEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 445689999998654456799999999999999999999999999999999999873
No 11
>cd07117 ALDH_StaphAldA1 Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like. Uncharacterized aldehyde dehydrogenase from Staphylococcus aureus (AldA1, locus SACOL0154) and other similar sequences are present in this CD.
Probab=98.79 E-value=2.2e-08 Score=72.30 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=48.2
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
..||+|+|..+..+..++++||+|++++++++.++.+|+++++++|++||+.|-
T Consensus 2 ~~~i~g~~~~~~~~~~~~~~nP~t~~~i~~~~~~~~~dv~~av~~A~~A~~~w~ 55 (475)
T cd07117 2 GLFINGEWVKGSSGETIDSYNPANGETLSEITDATDADVDRAVKAAQEAFKTWR 55 (475)
T ss_pred CceECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHHh
Confidence 358999998764456799999999999999999999999999999999999873
No 12
>PLN02766 coniferyl-aldehyde dehydrogenase
Probab=98.79 E-value=2.5e-08 Score=72.56 Aligned_cols=62 Identities=35% Similarity=0.487 Sum_probs=51.9
Q ss_pred CccccccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhccc
Q psy1100 16 APSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVF 77 (81)
Q Consensus 16 ~~~~~~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~ 77 (81)
++.+.....||+|+|+.+..+..++++||+|++++++++.++.+|++++|++|++||+...|
T Consensus 15 ~~~~~~~~~~I~G~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~~W 76 (501)
T PLN02766 15 VPEIKFTKLFINGEFVDAASGKTFETRDPRTGEVIARIAEGDKEDVDLAVKAAREAFDHGPW 76 (501)
T ss_pred CCCcccccceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCCcc
Confidence 34444556799999987644567999999999999999999999999999999999985333
No 13
>cd07082 ALDH_F11_NP-GAPDH NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase and ALDH family 11. NADP+-dependent non-phosphorylating glyceraldehyde 3-phosphate dehydrogenase (NP-GAPDH, EC=1.2.1.9) catalyzes the irreversible oxidation of glyceraldehyde 3-phosphate to 3-phosphoglycerate generating NADPH for biosynthetic reactions. This CD also includes the Arabidopsis thaliana osmotic-stress-inducible ALDH family 11, ALDH11A3 and similar sequences. In autotrophic eukaryotes, NP-GAPDH generates NADPH for biosynthetic processes from photosynthetic glyceraldehyde-3-phosphate exported from the chloroplast and catalyzes one of the classic glycolytic bypass reactions unique to plants.
Probab=98.78 E-value=2.3e-08 Score=71.89 Aligned_cols=54 Identities=15% Similarity=0.220 Sum_probs=48.7
Q ss_pred cceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 22 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.+++|+|+|..+. +..++++||+|++++++++.++.++|++++++|++||+.|.
T Consensus 2 ~~~~i~g~~~~~~-~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 55 (473)
T cd07082 2 FKYLINGEWKESS-GKTIEVYSPIDGEVIGSVPALSALEILEAAETAYDAGRGWW 55 (473)
T ss_pred CCceECCEEecCC-CCeEeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 3568999998764 56799999999999999999999999999999999999885
No 14
>PLN02315 aldehyde dehydrogenase family 7 member
Probab=98.77 E-value=1.5e-08 Score=73.92 Aligned_cols=55 Identities=16% Similarity=0.253 Sum_probs=48.9
Q ss_pred cccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 20 LVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 20 ~~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
...++||+|+|+.+ +..++++||.|++++++++.++.+||++||++|++||+.|.
T Consensus 19 ~~~~~~I~G~~~~~--~~~~~~~nP~t~~~i~~~~~a~~~~v~~av~~A~~A~~~W~ 73 (508)
T PLN02315 19 RNLGCYVGGEWRAN--GPLVSSVNPANNQPIAEVVEASLEDYEEGLRACEEAAKIWM 73 (508)
T ss_pred cccCceECCEEecC--CCeeeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 44668999999854 45689999999999999999999999999999999999873
No 15
>cd07126 ALDH_F12_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH family 12. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, EC=1.5.1.12), family 12: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. P5CDH is a mitochondrial enzyme involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. The P5CDH, ALDH12A1 gene, in Arabidopsis, has been identified as an osmotic-stress-inducible ALDH gene. This CD contains both Viridiplantae and Alveolata P5CDH sequences.
Probab=98.76 E-value=1.9e-08 Score=73.18 Aligned_cols=51 Identities=16% Similarity=0.280 Sum_probs=46.5
Q ss_pred eecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhccc
Q psy1100 25 FINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVF 77 (81)
Q Consensus 25 ~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~ 77 (81)
+|+|+|+.+ +..++++||+|++++++++.++.+||++||++|++||+.|.|
T Consensus 2 ~i~g~~~~~--~~~~~~~nP~t~~~i~~~~~a~~~dv~~Av~aA~~A~~~W~~ 52 (489)
T cd07126 2 LVAGKWKGA--SNYTTLLDPLNGDKFISVPDTDEDEINEFVDSLRQCPKSGLH 52 (489)
T ss_pred cCCCEEecC--CCcEEeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHhccc
Confidence 688998764 356999999999999999999999999999999999999966
No 16
>PRK13473 gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=98.76 E-value=3.1e-08 Score=71.34 Aligned_cols=55 Identities=25% Similarity=0.313 Sum_probs=48.6
Q ss_pred ccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 21 VFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 21 ~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+...||+|+|+.+ .+..++++||+|++++++++.++.+++++++++|++||+.|-
T Consensus 2 ~~~~~i~g~~~~~-~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~a~~~w~ 56 (475)
T PRK13473 2 QTKLLINGELVAG-EGEKQPVYNPATGEVLAEIAEASAAQVDAAVAAADAAFPEWS 56 (475)
T ss_pred CccceECCEEecC-CCCEEeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 3457899999865 356799999999999999999999999999999999999873
No 17
>PLN02467 betaine aldehyde dehydrogenase
Probab=98.76 E-value=3.8e-08 Score=71.67 Aligned_cols=53 Identities=28% Similarity=0.431 Sum_probs=47.6
Q ss_pred cccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhh
Q psy1100 20 LVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQ 72 (81)
Q Consensus 20 ~~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af 72 (81)
...+++|+|+|..+..+..++++||+|++++++++.++.+|+++||++|++||
T Consensus 6 ~~~~~~I~g~~~~~~~~~~~~v~~P~t~~~i~~~~~~~~~dv~~av~~A~~a~ 58 (503)
T PLN02467 6 PRRQLFIGGEWREPVLGKRIPVVNPATEETIGDIPAATAEDVDAAVEAARKAF 58 (503)
T ss_pred CccCceECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHh
Confidence 45578999999876445679999999999999999999999999999999999
No 18
>TIGR01238 D1pyr5carbox3 delta-1-pyrroline-5-carboxylate dehydrogenase (PutA C-terminal domain). This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch are the C-terminal domain of the PutA bifunctional proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase.
Probab=98.76 E-value=1.8e-08 Score=73.35 Aligned_cols=63 Identities=19% Similarity=0.138 Sum_probs=52.7
Q ss_pred cccCCccccccceeecceEeeCCCCCeeeeecCCCC-CeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 12 SAALAPSFLVFQLFINNAFVDAVSGRTFPTINPATE-DKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 12 ~~~~~~~~~~~~~~i~G~~~~~~~~~~~~v~nP~tg-~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+..+..-....+.||+|+|+. .+..++++||+|+ +++++++.++.+||++|+++|++||+.|-
T Consensus 28 ~~~~~~~~~~~~~~i~g~~~~--~~~~~~~~nP~t~~e~i~~~~~~~~~dv~~av~~A~~a~~~W~ 91 (500)
T TIGR01238 28 IHAWADKTWQAAPIIGHSYKA--DGEAQPVTNPADRRDIVGQVFHANLAHVQAAIDSAQQAFPTWN 91 (500)
T ss_pred HHHHhcCceecCceECCEEec--CCCeEEeeCCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 333444456678999999986 2567899999995 89999999999999999999999999874
No 19
>cd07142 ALDH_F2BC Arabidosis aldehyde dehydrogenase family 2 B4, B7, C4-like. Included in this CD is the Arabidosis aldehyde dehydrogenase family 2 members B4 and B7 (EC=1.2.1.3), which are mitochondrial homotetramers that oxidize acetaldehyde and glycolaldehyde, but not L-lactaldehyde. Also in this group, is the Arabidosis cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme involved in the oxidation of sinapalehyde and coniferaldehyde.
Probab=98.75 E-value=3.4e-08 Score=71.23 Aligned_cols=56 Identities=39% Similarity=0.579 Sum_probs=48.6
Q ss_pred cceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhccc
Q psy1100 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVF 77 (81)
Q Consensus 22 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~ 77 (81)
.+.+|+|+|+.+..+..++++||+|++++++++.++.+|++++|++|++||+...|
T Consensus 4 ~~~~i~g~~~~~~~~~~~~v~~P~t~~~i~~v~~~~~~~v~~av~~A~~a~~~~~w 59 (476)
T cd07142 4 TKLFINGQFVDAASGKTFPTIDPRNGEVIAHVAEGDAEDVDRAVKAARKAFDEGPW 59 (476)
T ss_pred ccceECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHhcCCCch
Confidence 45689999986544567999999999999999999999999999999999986334
No 20
>cd07144 ALDH_ALD2-YMR170C Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent Saccharomyces cerevisiae aldehyde dehydrogenase 2 (YMR170c, ALD5, EC=1.2.1.5) and other similar sequences, are present in this CD.
Probab=98.75 E-value=3.5e-08 Score=71.27 Aligned_cols=55 Identities=33% Similarity=0.376 Sum_probs=48.7
Q ss_pred cceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 22 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.+.||+|+|..+..+..+.++||+|++++++++.++.++++.++++|++||+.||
T Consensus 8 ~~~~i~g~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~ai~~A~~A~~~~w 62 (484)
T cd07144 8 TGLFINNEFVKSSDGETIKTVNPSTGEVIASVYAAGEEDVDKAVKAARKAFESWW 62 (484)
T ss_pred cCcEECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHhhH
Confidence 4578999998754456789999999999999999999999999999999999754
No 21
>cd07085 ALDH_F6_MMSDH Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.
Probab=98.75 E-value=3.3e-08 Score=71.29 Aligned_cols=54 Identities=24% Similarity=0.254 Sum_probs=48.2
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+.+|+|+|+.+..+..++++||+|++++++++.++.+++++++++|++||+.|-
T Consensus 2 ~~~i~g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 55 (478)
T cd07085 2 KLFINGEWVESKTTEWLDVYNPATGEVIARVPLATAEEVDAAVAAAKAAFPAWS 55 (478)
T ss_pred CceECCEEecCCCCCeEEeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 368999998764456789999999999999999999999999999999999874
No 22
>cd07125 ALDH_PutA-P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.
Probab=98.75 E-value=2e-08 Score=73.19 Aligned_cols=73 Identities=22% Similarity=0.251 Sum_probs=57.2
Q ss_pred Ccchhhh------hcccccCCccccccceeecceEeeCCCCCeeeeecCCC-CCeeEEecCCCHHHHHHHHHHHHHhhhh
Q psy1100 2 SRQYDIE------ERGSAALAPSFLVFQLFINNAFVDAVSGRTFPTINPAT-EDKIADVAEADKVNPAKTIVMLISCQHL 74 (81)
Q Consensus 2 ~~~~~~~------~~~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~v~nP~t-g~~l~~v~~as~edv~~ai~aA~~Af~~ 74 (81)
.|+||.+ |-.+..+.......-.||+|+|.. .+..++++||+| ++++++++.++.+|+++++++|++||+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~g~~~~--~~~~~~v~~P~t~g~~i~~~~~~~~~~v~~av~~A~~A~~~ 84 (518)
T cd07125 7 NRIFDLEVPLEALADALKAFDEKEWEAIPIINGEETE--TGEGAPVIDPADHERTIGEVSLADAEDVDAALAIAAAAFAG 84 (518)
T ss_pred HHhcCCCCCHHHHHHHHHHhhhcCcccCceECCEEee--CCCeEEEECCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 4778764 334444444434444689999973 356799999999 9999999999999999999999999998
Q ss_pred cc
Q psy1100 75 EV 76 (81)
Q Consensus 75 ~~ 76 (81)
|.
T Consensus 85 w~ 86 (518)
T cd07125 85 WS 86 (518)
T ss_pred Hh
Confidence 74
No 23
>cd07138 ALDH_CddD_SSP0762 Rhodococcus ruber 6-oxolauric acid dehydrogenase-like. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid, and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and other similar sequences, are included in this CD.
Probab=98.75 E-value=3.2e-08 Score=71.11 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=47.5
Q ss_pred eeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 24 LFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 24 ~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+||+|+|+.+..+..++++||.|++++++++.++.++++++|++|++||+.|.
T Consensus 1 ~~i~g~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~~~v~~av~~A~~A~~~w~ 53 (466)
T cd07138 1 FYIDGAWVAPAGTETIDVINPATEEVIGTVPLGTAADVDRAVAAARRAFPAWS 53 (466)
T ss_pred CeECCEeecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 47899998764456789999999999999999999999999999999999874
No 24
>TIGR01722 MMSDH methylmalonic acid semialdehyde dehydrogenase. In Bacillus, a highly homologous protein to methylmalonic acid semialdehyde dehydrogenase, groups out from the main MMSDH clade with Listeria and Sulfolobus. This Bacillus protein has been suggested to be located in an iol operon and/or involved in myo-inositol catabolism, converting malonic semialdehyde to acetyl CoA ad CO2. The preceeding enzymes responsible for valine catabolism are present in Bacillus, Listeria, and Sulfolobus.
Probab=98.75 E-value=3.7e-08 Score=71.08 Aligned_cols=53 Identities=23% Similarity=0.238 Sum_probs=47.6
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLE 75 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~ 75 (81)
.++|+|+|..+..+..++++||+|++++++++.++.+++++++++|++||+.|
T Consensus 2 ~~~i~g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~ai~~A~~A~~~w 54 (477)
T TIGR01722 2 NHWIGGKFAEGASGTYIPVTNPATNEVTTKVAFASVDEVDAAVASARETFLTW 54 (477)
T ss_pred ceeECCEEecCCCCCeEeeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 46899999865445679999999999999999999999999999999999987
No 25
>cd07111 ALDH_F16 Aldehyde dehydrogenase family 16A1-like. Uncharacterized aldehyde dehydrogenase family 16 member A1 (ALDH16A1) and other related sequences are present in this CD. The active site cysteine and glutamate residues are not conserved in the human ALDH16A1 protein sequence.
Probab=98.75 E-value=3.5e-08 Score=71.48 Aligned_cols=56 Identities=29% Similarity=0.424 Sum_probs=49.5
Q ss_pred ccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 21 VFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 21 ~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
..+.+|+|+|+.+..+..+.++||+|++++++++.++.+++++++++|++||+.|.
T Consensus 21 ~~~~~i~g~~~~~~~~~~~~~~nP~t~~~i~~~~~a~~~~v~~ai~~A~~a~~~w~ 76 (480)
T cd07111 21 SFGHFINGKWVKPENRKSFPTINPATGEVLASVLQAEEEDVDAAVAAARTAFESWS 76 (480)
T ss_pred cccceECCEEecCCCCCeEEeECCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHhc
Confidence 35679999998754456789999999999999999999999999999999999874
No 26
>PLN00412 NADP-dependent glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=98.75 E-value=3.8e-08 Score=71.51 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=50.2
Q ss_pred cccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 20 LVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 20 ~~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
...++||+|+|+.+..+..++++||+|++++++++.++.+|+++++++|++||+.|-
T Consensus 14 ~~~~~~i~G~~~~~~~~~~~~~~~P~t~~~i~~~~~a~~~dv~~av~~A~~A~~~W~ 70 (496)
T PLN00412 14 DVYKYYADGEWRTSSSGKSVAITNPSTRKTQYKVQACTQEEVNKAMESAKAAQKAWA 70 (496)
T ss_pred cccCceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 445679999998654456799999999999999999999999999999999999873
No 27
>PRK09847 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase; Provisional
Probab=98.74 E-value=3.8e-08 Score=71.45 Aligned_cols=58 Identities=22% Similarity=0.386 Sum_probs=50.0
Q ss_pred cccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhccc
Q psy1100 20 LVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVF 77 (81)
Q Consensus 20 ~~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~ 77 (81)
+..++||+|+|..+..+..++++||+|++++++++.++.+|+++++++|++||+...|
T Consensus 18 ~~~~~~i~g~~~~~~~~~~~~~~nP~tg~~i~~v~~~~~~dv~~av~aA~~a~~~~~W 75 (494)
T PRK09847 18 IENRLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVDIDRAVSAARGVFERGDW 75 (494)
T ss_pred cccCceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCCcc
Confidence 4456799999986644667999999999999999999999999999999999985433
No 28
>TIGR03374 ABALDH 1-pyrroline dehydrogenase. Members of this protein family are 1-pyrroline dehydrogenase (1.5.1.35), also called gamma-aminobutyraldehyde dehydrogenase. This enzyme can follow putrescine transaminase (EC 2.6.1.82) for a two-step conversion of putrescine to gamma-aminobutyric acid (GABA). The member from Escherichia coli is characterized as a homotetramer that binds one NADH per momomer. This enzyme belongs to the medium-chain aldehyde dehydrogenases, and is quite similar in sequence to the betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Probab=98.73 E-value=4e-08 Score=70.97 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=48.1
Q ss_pred cceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 22 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.+.||+|+|+.+ .+..++++||+|++++++++.++.++++++|++|++||+.|-
T Consensus 2 ~~~~i~g~~~~~-~~~~~~v~~P~tg~~i~~~~~~~~~~v~~av~~a~~a~~~w~ 55 (472)
T TIGR03374 2 HKLLINGELVSG-EGEKQPVYNPATGEVILEIAEASAEQVDAAVRAADAAFAEWG 55 (472)
T ss_pred CCceECCEEecC-CCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 357899999865 356789999999999999999999999999999999999873
No 29
>KOG2452|consensus
Probab=98.72 E-value=1.4e-08 Score=74.13 Aligned_cols=59 Identities=29% Similarity=0.357 Sum_probs=55.2
Q ss_pred cccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcccc
Q psy1100 20 LVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVFN 78 (81)
Q Consensus 20 ~~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~~ 78 (81)
+....||+|+++..+.+.++..+||.|++++|+++.++..||++|+.+|+.||..+.|.
T Consensus 420 ~ph~~fi~g~fv~~~~~~t~~tinp~~~~~ic~~~la~v~dvd~av~aak~afe~g~w~ 478 (881)
T KOG2452|consen 420 MPHQLFIGGEFVDAEGAKTSETINPTDGSVICQVSLAQVTDVDKAVAAAKGAFENGRWG 478 (881)
T ss_pred CcHhhccCcEeecccCCccccccCCCCCCeeEEeehhHhhhHHHHHHHHhhhhhcCccc
Confidence 55668999999998888889999999999999999999999999999999999999995
No 30
>TIGR01236 D1pyr5carbox1 delta-1-pyrroline-5-carboxylate dehydrogenase, group 1. This model represents one of two related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. The two branches are not as closely related to each other as some aldehyde dehydrogenases are to this branch, and separate models are built for this reason. The enzyme is the second of two in the degradation of proline to glutamate.
Probab=98.72 E-value=2.9e-08 Score=72.78 Aligned_cols=66 Identities=17% Similarity=0.191 Sum_probs=54.6
Q ss_pred cccccCCccccccceeecceEeeCCCCCeeeeecCCC-CCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 10 RGSAALAPSFLVFQLFINNAFVDAVSGRTFPTINPAT-EDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 10 ~~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~v~nP~t-g~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
..+..++......+.+|+|+|..+ .+..++++||.| ++++++++.++.+||+++|++|++||+.|.
T Consensus 20 ~~~~~~~~~~~~~~~~i~G~~~~~-~~~~~~~~nP~t~g~~i~~~~~~~~~~v~~av~~A~~a~~~W~ 86 (533)
T TIGR01236 20 AELKELKSHPIEIPLVIGGEEVMG-SGERIDQVQPHNHQAVLAKATNATEEDAAKAVEAALDAKKDWS 86 (533)
T ss_pred HHHHHHhhcCeeeceeECCEEecC-CCCEEEEECCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 334444555577788999999874 345789999997 899999999999999999999999999873
No 31
>PLN02466 aldehyde dehydrogenase family 2 member
Probab=98.72 E-value=7e-08 Score=70.88 Aligned_cols=56 Identities=39% Similarity=0.571 Sum_probs=49.3
Q ss_pred cceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhccc
Q psy1100 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVF 77 (81)
Q Consensus 22 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~ 77 (81)
...||+|+|+.+..+..++++||+|++++++++.++.+|+++||++|++||+.+.|
T Consensus 58 ~~~~I~G~~~~~~~~~~~~v~~P~tg~~i~~v~~~~~~dv~~Av~aA~~a~~~~~w 113 (538)
T PLN02466 58 TQLLINGQFVDAASGKTFPTLDPRTGEVIAHVAEGDAEDVNRAVAAARKAFDEGPW 113 (538)
T ss_pred ccceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHcCcCcc
Confidence 35799999987655677999999999999999999999999999999999986444
No 32
>cd07113 ALDH_PADH_NahF Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like. NAD+-dependent, homodimeric, phenylacetaldehyde dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia coli involved in the catabolism of 2-phenylethylamine, and other related sequences, are present in this CD. Also included is the Pseudomonas fluorescens ST StyD PADH involved in styrene catabolism, the Sphingomonas sp. LB126 FldD protein involved in fluorene degradation, and the Novosphingobium aromaticivorans NahF salicylaldehyde dehydrogenase involved in the NAD+-dependent conversion of salicylaldehyde to salicylate.
Probab=98.72 E-value=4.9e-08 Score=70.46 Aligned_cols=52 Identities=27% Similarity=0.270 Sum_probs=46.5
Q ss_pred eeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhc
Q psy1100 24 LFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLE 75 (81)
Q Consensus 24 ~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~ 75 (81)
+||+|+|..+..+..++++||+|++++++++.++.++++++|++|++||+.+
T Consensus 2 ~~i~g~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~ 53 (477)
T cd07113 2 HFIDGRPVAGQSEKRLDITNPATEQVIASVASATEADVDAAVASAWRAFVSA 53 (477)
T ss_pred CeECCEEecCCCCCeEeeeCCCCCCEEEEEcCCCHHHHHHHHHHHHHHhHhh
Confidence 5899999876445678999999999999999999999999999999999863
No 33
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase. This model represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring.
Probab=98.71 E-value=4.8e-08 Score=70.62 Aligned_cols=54 Identities=26% Similarity=0.359 Sum_probs=47.9
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+.||+|+|+.+..+..++++||+||+++++++.++.+++++++++|++||+.|-
T Consensus 2 ~~~i~g~~~~~~~~~~~~~~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 55 (488)
T TIGR02299 2 GHFIDGEFVPSESGETFETLSPATNEVLGSVARGGAADVDRAAKAAKEAFKRWA 55 (488)
T ss_pred CccCCCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 358999998764456789999999999999999999999999999999999873
No 34
>cd07143 ALDH_AldA_AN0554 Aspergillus nidulans aldehyde dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent aldehyde dehydrogenase (AldA) of Aspergillus nidulans (locus AN0554), and other similar sequences, are present in this CD.
Probab=98.70 E-value=6.1e-08 Score=70.17 Aligned_cols=55 Identities=31% Similarity=0.373 Sum_probs=48.1
Q ss_pred cceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhh-cc
Q psy1100 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHL-EV 76 (81)
Q Consensus 22 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~-~~ 76 (81)
.+.||+|+|..+..+..+.++||+|++++++++.++.+|++++|++|++||+. |-
T Consensus 7 ~~~~I~G~~~~~~~~~~~~v~~P~t~~~i~~~~~~~~~~v~~av~~a~~a~~~~W~ 62 (481)
T cd07143 7 TGLFINGEFVDSVHGGTVKVYNPSTGKLITKIAEATEADVDIAVEVAHAAFETDWG 62 (481)
T ss_pred cCceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhhc
Confidence 35689999987644567899999999999999999999999999999999984 53
No 35
>cd07086 ALDH_F7_AASADH-like NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase and related proteins. ALDH subfamily which includes the NAD+-dependent, alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1, ALDH7B or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), and other similar sequences, such as the uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105).
Probab=98.67 E-value=6.2e-08 Score=69.93 Aligned_cols=52 Identities=23% Similarity=0.213 Sum_probs=46.7
Q ss_pred eeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 24 LFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 24 ~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+||+|+|+.+. +..++++||+|++++++++.++.+++++++++|++||+.|-
T Consensus 1 ~~i~g~~~~~~-~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 52 (478)
T cd07086 1 GVIGGEWVGSG-GETFTSRNPANGEPIARVFPASPEDVEAAVAAAREAFKEWR 52 (478)
T ss_pred CcCCCEEecCC-CCEEeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 37899998764 56789999999999999999999999999999999999873
No 36
>PRK09457 astD succinylglutamic semialdehyde dehydrogenase; Reviewed
Probab=98.67 E-value=8.8e-08 Score=69.39 Aligned_cols=53 Identities=15% Similarity=0.233 Sum_probs=47.3
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
..||+|+|..+. +..++++||+|++++++++.++.+++++++++|++||+.|-
T Consensus 2 ~~~i~g~~~~~~-~~~~~~~~P~t~~~i~~~~~a~~~~v~~av~~A~~A~~~w~ 54 (487)
T PRK09457 2 TLWINGDWIAGQ-GEAFESRNPVSGEVLWQGNDATAAQVDAAVRAARAAFPAWA 54 (487)
T ss_pred CceECCEEecCC-CCEEEEECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHc
Confidence 368999998653 45699999999999999999999999999999999999874
No 37
>TIGR01804 BADH glycine betaine aldehyde dehydrogenase. Betaine aldehyde dehydrogenase is a member of the aldehyde dehydrogenase family (pfam00171).
Probab=98.66 E-value=7.1e-08 Score=69.38 Aligned_cols=52 Identities=35% Similarity=0.444 Sum_probs=46.6
Q ss_pred eecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 25 FINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 25 ~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
||+|+|..+..+..+.++||+|++++++++.++.+++++++++|++||+.|.
T Consensus 1 ~i~g~~~~~~~~~~~~~~nP~t~~~i~~~~~~~~~~v~~av~~a~~a~~~w~ 52 (467)
T TIGR01804 1 FIDGEWVEASAGETREIINPANQEVIATVAEATREDVERAIAAARRAQGEWA 52 (467)
T ss_pred CCCCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 5789998654456799999999999999999999999999999999999874
No 38
>cd07141 ALDH_F1AB_F2_RALDH1 NAD+-dependent retinal dehydrogenase 1, ALDH families 1A, 1B, and 2-like. NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1, EC=1.2.1.36) also known as aldehyde dehydrogenase family 1 member A1 (ALDH1A1) in humans, is a homotetrameric, cytosolic enzyme that catalyzes the oxidation of retinaldehyde to retinoic acid. Human ALDH1B1 and ALDH2 are also in this cluster; both are mitochrondrial homotetramers which play important roles in acetaldehyde oxidation; ALDH1B1 in response to UV light exposure and ALDH2 during ethanol metabolism.
Probab=98.65 E-value=1.2e-07 Score=68.57 Aligned_cols=54 Identities=46% Similarity=0.704 Sum_probs=47.9
Q ss_pred ccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhh
Q psy1100 21 VFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHL 74 (81)
Q Consensus 21 ~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~ 74 (81)
..+.||+|+|+.+..+..+.++||+|++++++++.++.++++++|++|++||+.
T Consensus 6 ~~~~~I~g~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~ 59 (481)
T cd07141 6 YTKIFINNEWHDSVSGKTFPTINPATGEKICEVQEGDKADVDKAVKAARAAFKL 59 (481)
T ss_pred cccceECCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHhhc
Confidence 345789999987544567999999999999999999999999999999999984
No 39
>TIGR03240 arg_catab_astD succinylglutamic semialdehyde dehydrogenase. Members of this protein family are succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71), the fourth enzyme in the arginine succinyltransferase (AST) pathway for arginine catabolism.
Probab=98.63 E-value=1.1e-07 Score=68.76 Aligned_cols=52 Identities=21% Similarity=0.305 Sum_probs=46.3
Q ss_pred eeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 24 LFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 24 ~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+||+|+|..+ .+..++++||+|++++++++.++.+|+++++++|++||+.|-
T Consensus 1 ~~i~g~~~~~-~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 52 (484)
T TIGR03240 1 LFIDGKWRAG-QGESFSSTNPATQEVLWQGAAASAAQVEAAVAAARAAFPAWA 52 (484)
T ss_pred CeECCEEecC-CCCEEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHc
Confidence 3789998765 356799999999999999999999999999999999999874
No 40
>cd07088 ALDH_LactADH-AldA Escherichia coli lactaldehyde dehydrogenase AldA-like. Lactaldehyde dehydrogenase from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an NAD(+)-dependent enzyme involved in the metabolism of L-fucose and L-rhamnose, and other similar sequences are present in this CD.
Probab=98.63 E-value=9.8e-08 Score=68.55 Aligned_cols=52 Identities=29% Similarity=0.401 Sum_probs=46.4
Q ss_pred eecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 25 FINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 25 ~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
||+|+|+.+..+..++++||+|++++++++.++.+++++++++|++||+.|-
T Consensus 1 ~i~g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 52 (468)
T cd07088 1 YINGEFVPSSSGETIDVLNPATGEVVATVPAATAEDADRAVDAAEAAQKAWE 52 (468)
T ss_pred CCCCEEecCCCCCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 5789998654456799999999999999999999999999999999999874
No 41
>TIGR03216 OH_muco_semi_DH 2-hydroxymuconic semialdehyde dehydrogenase. Members of this protein family are 2-hydroxymuconic semialdehyde dehydrogenase. Many aromatic compounds are catabolized by way of the catechol, via the meta-cleavage pathway, to pyruvate and acetyl-CoA. This enzyme performs the second of seven steps in that pathway for catechol degradation.
Probab=98.62 E-value=1.3e-07 Score=68.40 Aligned_cols=51 Identities=33% Similarity=0.438 Sum_probs=46.2
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhh-c
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHL-E 75 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~-~ 75 (81)
++||+|+|+.+ +..++++||+|++++++++.++.+++++++++|++||+. |
T Consensus 2 ~~~i~g~~~~~--~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~~w 53 (481)
T TIGR03216 2 RNFINGAFVES--GKTFANINPVDGRVIARVHEAGAAEVDAAVAAARAALKGPW 53 (481)
T ss_pred CceECCEEecC--CCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHhHhhH
Confidence 36899999863 567999999999999999999999999999999999986 6
No 42
>PRK03137 1-pyrroline-5-carboxylate dehydrogenase; Provisional
Probab=98.62 E-value=9.5e-08 Score=69.64 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=49.1
Q ss_pred ccccceeecceEeeCCCCCeeeeecCC-CCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 19 FLVFQLFINNAFVDAVSGRTFPTINPA-TEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 19 ~~~~~~~i~G~~~~~~~~~~~~v~nP~-tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+...+.+|+|+|+.+ +..++++||+ |++++++++.++.++++++|++|++||+.|-
T Consensus 34 ~~~~~~~i~g~~~~~--~~~~~~~~P~~t~~~i~~~~~a~~~~v~~av~~A~~A~~~W~ 90 (514)
T PRK03137 34 GQDYPLIIGGERITT--EDKIVSINPANKSEVVGRVSKATKELAEKAMQAALEAFETWK 90 (514)
T ss_pred ccccceeECCEEecC--CCeeEeECCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 345668999999865 4569999999 6999999999999999999999999999874
No 43
>cd07124 ALDH_PutA-P5CDH-RocA Delta(1)-pyrroline-5-carboxylate dehydrogenase, RocA. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), RocA: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. The proline catabolic enzymes, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). In this CD, monofunctional enzyme sequences such as seen in the Bacillus subtilis RocA P5CDH are also present. These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis.
Probab=98.59 E-value=1.4e-07 Score=68.77 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=48.7
Q ss_pred cccceeecceEeeCCCCCeeeeecCCC-CCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 20 LVFQLFINNAFVDAVSGRTFPTINPAT-EDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 20 ~~~~~~i~G~~~~~~~~~~~~v~nP~t-g~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
...+.||+|+|..+ +..+.++||+| ++++++++.++.+++++++++|++||+.|.
T Consensus 31 ~~~~~~i~g~~~~~--~~~~~v~~P~t~~~~i~~~~~a~~~~v~~av~~A~~A~~~W~ 86 (512)
T cd07124 31 REYPLVIGGKEVRT--EEKIESRNPADPSEVLGTVQKATKEEAEAAVQAARAAFPTWR 86 (512)
T ss_pred cccceeECCEEecC--CCeEEeECCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 44568999999864 45699999998 999999999999999999999999999874
No 44
>cd07123 ALDH_F4-17_P5CDH Delta(1)-pyrroline-5-carboxylate dehydrogenase, ALDH families 4 and 17. Delta(1)-pyrroline-5-carboxylate dehydrogenase (EC=1.5.1.12 ), families 4 and 17: a proline catabolic enzyme of the aldehyde dehydrogenase (ALDH) protein superfamily. Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH), also known as ALDH4A1 in humans, is a mitochondrial homodimer involved in proline degradation and catalyzes the NAD + -dependent conversion of P5C to glutamate. This is a necessary step in the pathway interconnecting the urea and tricarboxylic acid cycles. The preferred substrate is glutamic gamma-semialdehyde, other substrates include succinic, glutaric and adipic semialdehydes. Also included in this CD is the Aldh17 Drosophila melanogaster (Q9VUC0) P5CDH and similar sequences.
Probab=98.58 E-value=1.9e-07 Score=68.27 Aligned_cols=55 Identities=20% Similarity=0.149 Sum_probs=48.3
Q ss_pred cccceeecceEeeCCCCCeeeeecCCC-CCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 20 LVFQLFINNAFVDAVSGRTFPTINPAT-EDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 20 ~~~~~~i~G~~~~~~~~~~~~v~nP~t-g~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.....||+|+|+.+ +..++++||+| ++++++++.++.++|+++|++|++||+.|-
T Consensus 31 ~~~~~~i~G~~~~~--~~~~~v~~P~~tg~~l~~~~~~~~~~v~~av~~A~~A~~~W~ 86 (522)
T cd07123 31 VEIPLVIGGKEVRT--GNTGKQVMPHDHAHVLATYHYADAALVEKAIEAALEARKEWA 86 (522)
T ss_pred cccCeeECCEEcCC--CCeEEEECCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 44668999999864 45789999995 999999999999999999999999999874
No 45
>cd07128 ALDH_MaoC-N N-terminal domain of the monoamine oxidase C dehydratase. The N-terminal domain of the MaoC dehydratase, a monoamine oxidase regulatory protein. Orthologs of MaoC include PaaZ (Escherichia coli) and PaaN (Pseudomonas putida), which are putative ring-opening enzymes of the aerobic phenylacetic acid (PA) catabolic pathway. The C-terminal domain of MaoC has sequence similarity to enoyl-CoA hydratase. Also included in this CD is a novel Burkholderia xenovorans LB400 ALDH of the aerobic benzoate oxidation (box) pathway. This pathway involves first the synthesis of a CoA thio-esterified aromatic acid, with subsequent dihydroxylation and cleavage steps, yielding the CoA thio-esterified aliphatic aldehyde, 3,4-dehydroadipyl-CoA semialdehyde, which is further converted into its corresponding CoA acid by the Burkholderia LB400 ALDH.
Probab=98.57 E-value=1.7e-07 Score=68.55 Aligned_cols=51 Identities=12% Similarity=0.119 Sum_probs=44.2
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHh-hhhc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISC-QHLE 75 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~A-f~~~ 75 (81)
.+||+|+|+.+. +..++++||+||+++++++.++ +|+++||++|++| |+.|
T Consensus 2 ~~~I~g~~~~~~-~~~~~~~nP~tg~~~~~~~~~~-~dv~~Av~~A~~A~~~~W 53 (513)
T cd07128 2 QSYVAGQWHAGT-GDGRTLHDAVTGEVVARVSSEG-LDFAAAVAYAREKGGPAL 53 (513)
T ss_pred ceeECCEEEcCC-CCEEEeECCCCCCEEEEEcCCH-HHHHHHHHHHHHhhhchh
Confidence 468999998763 4679999999999999999876 8999999999997 6776
No 46
>cd07139 ALDH_AldA-Rv0768 Mycobacterium tuberculosis aldehyde dehydrogenase AldA-like. The Mycobacterium tuberculosis NAD+-dependent, aldehyde dehydrogenase PDB structure, 3B4W, and the Mycobacterium tuberculosis H37Rv aldehyde dehydrogenase AldA (locus Rv0768) sequence, as well as the Rhodococcus rhodochrous ALDH involved in haloalkane catabolism, and other similar sequences, are included in this CD.
Probab=98.57 E-value=2.1e-07 Score=66.99 Aligned_cols=54 Identities=22% Similarity=0.335 Sum_probs=46.7
Q ss_pred eeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhccc
Q psy1100 24 LFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVF 77 (81)
Q Consensus 24 ~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~ 77 (81)
.+|+|+|..+..+..++++||+|++++++++.++.+++++++++|++||+...|
T Consensus 1 ~~i~g~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~a~~a~~~~~W 54 (471)
T cd07139 1 LFIGGRWVAPSGSETIDVVSPATEEVVGRVPEATPADVDAAVAAARRAFDNGPW 54 (471)
T ss_pred CeECCEeecCCCCCeEEeECCCCCCEeEEEeCCCHHHHHHHHHHHHHHcCCCch
Confidence 378999986544567999999999999999999999999999999999986333
No 47
>PRK11563 bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase; Provisional
Probab=98.56 E-value=1.7e-07 Score=70.36 Aligned_cols=54 Identities=13% Similarity=0.181 Sum_probs=46.5
Q ss_pred cccceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHh-hhhc
Q psy1100 20 LVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISC-QHLE 75 (81)
Q Consensus 20 ~~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~A-f~~~ 75 (81)
+..++||+|+|+.+ .+..+.++||.|++++++++.++ +|+++||++|++| |+.|
T Consensus 3 ~~~~~~i~G~~~~~-~~~~~~~~nP~tg~~i~~~~~~~-~dv~~Av~~A~~A~~~~W 57 (675)
T PRK11563 3 QKLQSYVAGRWQTG-QGEGRPLHDAVTGEPVARVSSEG-LDFAAALAYAREVGGPAL 57 (675)
T ss_pred ccccceecCEEEcC-CCCceeccCCCCCCEEEEEcCCc-HHHHHHHHHHHHhhhhhh
Confidence 44568999999875 34568999999999999999987 6999999999998 6877
No 48
>cd07131 ALDH_AldH-CAJ73105 Uncharacterized Candidatus kuenenia aldehyde dehydrogenase AldH (CAJ73105)-like. Uncharacterized aldehyde dehydrogenase of Candidatus kuenenia AldH (locus CAJ73105) and similar sequences with similarity to alpha-aminoadipic semialdehyde dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31), Arabidopsis ALDH7B4, and Streptomyces clavuligerus delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH) are included in this CD.
Probab=98.54 E-value=2.3e-07 Score=66.91 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=46.3
Q ss_pred eeecceEeeCCCCCeeeeecCCC-CCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 24 LFINNAFVDAVSGRTFPTINPAT-EDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 24 ~~i~G~~~~~~~~~~~~v~nP~t-g~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++|+|+|+.+..+..++++||+| ++++++++.++.+++++++++|++||+.|.
T Consensus 1 ~~i~g~~~~~~~~~~~~~~~P~t~~~~~~~~~~~~~~~v~~av~~a~~A~~~w~ 54 (478)
T cd07131 1 NYIGGEWVDSASGETFDSRNPADLEEVVGTFPLSTASDVDAAVEAAREAFPEWR 54 (478)
T ss_pred CcCCCEeecCCCCCeEEEECCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 36899998654456799999999 689999999999999999999999999874
No 49
>cd07130 ALDH_F7_AASADH NAD+-dependent alpha-aminoadipic semialdehyde dehydrogenase, ALDH family members 7A1 and 7B. Alpha-aminoadipic semialdehyde dehydrogenase (AASADH, EC=1.2.1.31), also known as ALDH7A1, Antiquitin-1, ALDH7B, or delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH), is a NAD+-dependent ALDH. Human ALDH7A1 is involved in the pipecolic acid pathway of lysine catabolism, catalyzing the oxidation of alpha-aminoadipic semialdehyde to alpha-aminoadipate. Arabidopsis thaliana ALDH7B4 appears to be an osmotic-stress-inducible ALDH gene encoding a turgor-responsive or stress-inducible ALDH. The Streptomyces clavuligerus P6CDH appears to be involved in cephamycin biosynthesis, catalyzing the second stage of the two-step conversion of lysine to alpha-aminoadipic acid. The ALDH7A1 enzyme and others in this group have been observed as tetramers, yet the bacterial P6CDH enzyme has been reported as a monomer.
Probab=98.54 E-value=2.7e-07 Score=66.62 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=45.5
Q ss_pred eecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 25 FINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 25 ~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+|+|+|+.+ +..++++||+|++++++++.++.+++++++++|++||+.|.
T Consensus 2 ~i~g~~~~~--~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~a~~A~~~w~ 51 (474)
T cd07130 2 VYDGEWGGG--GGVVTSISPANGEPIARVRQATPEDYESTIKAAQEAFKEWR 51 (474)
T ss_pred eECCEEecC--CCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 689999874 45689999999999999999999999999999999999874
No 50
>cd07119 ALDH_BADH-GbsA Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.
Probab=98.54 E-value=2.3e-07 Score=66.97 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=45.9
Q ss_pred eecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhccc
Q psy1100 25 FINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVF 77 (81)
Q Consensus 25 ~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~ 77 (81)
||+|+|..+..+..++++||+|++.+++++.++.++++++++.|++||+...|
T Consensus 1 ~i~g~~~~~~~~~~~~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~~~w 53 (482)
T cd07119 1 YIDGEWVEAASGKTRDIINPANGEVIATVPEGTAEDAKRAIAAARRAFDSGEW 53 (482)
T ss_pred CCCCEEecCCCCCeEEeeCCCCCCEEEEEeCCCHHHHHHHHHHHHHHcCCCch
Confidence 57899876544567999999999999999999999999999999999985444
No 51
>COG1012 PutA NAD-dependent aldehyde dehydrogenases [Energy production and conversion]
Probab=98.50 E-value=2.5e-07 Score=67.09 Aligned_cols=51 Identities=29% Similarity=0.363 Sum_probs=46.4
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLE 75 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~ 75 (81)
.++|+|+|+.... .+++.||+|++.+++++.++.+|+++|+++|+.+|+.|
T Consensus 2 ~~~i~g~~~~~~~--~~~~~nP~tg~~i~~~~~a~~~dv~~Av~aA~~a~~~W 52 (472)
T COG1012 2 KLLIDGEWVDGAS--TIEVINPATGEVIATVPAATAEDVDAAVAAARAAFEAW 52 (472)
T ss_pred CccCCCeecCCCC--ceeeeCCCCCCEEeeecCCCHHHHHHHHHHHHHHHHHh
Confidence 4689999988643 79999999999999999999999999999999999866
No 52
>TIGR01237 D1pyr5carbox2 delta-1-pyrroline-5-carboxylate dehydrogenase, group 2, putative. This enzyme is the second of two in the degradation of proline to glutamate. This model represents one of several related branches of delta-1-pyrroline-5-carboxylate dehydrogenase. Members of this branch may be associated with proline dehydrogenase (the other enzyme of the pathway from proline to glutamate) but have not been demonstrated experimentally. The branches are not as closely related to each other as some distinct aldehyde dehydrogenases are to some; separate models were built to let each model describe a set of equivalogs.
Probab=98.49 E-value=3e-07 Score=67.02 Aligned_cols=56 Identities=16% Similarity=0.285 Sum_probs=48.7
Q ss_pred ccccceeecceEeeCCCCCeeeeecCCC-CCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 19 FLVFQLFINNAFVDAVSGRTFPTINPAT-EDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 19 ~~~~~~~i~G~~~~~~~~~~~~v~nP~t-g~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+...+.+|+|+|+.+ +..+.++||+| ++++++++.++.++|+++|+.|++||+.|.
T Consensus 30 ~~~~~~~i~g~~~~~--~~~~~~~~P~~~~~~i~~~~~~~~~~v~~av~~A~~A~~~W~ 86 (511)
T TIGR01237 30 GKTYPLYINGEYVET--ENKIDSINPCDPSEVVGKVGKASVEQAEHALQIAKKAFEAWK 86 (511)
T ss_pred ccccceeECCEEecC--CCeEEeECCCCCCcEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 455668999999865 34589999995 999999999999999999999999999874
No 53
>cd07097 ALDH_KGSADH-YcbD Bacillus subtilis NADP+-dependent alpha-ketoglutaric semialdehyde dehydrogenase ycbD-like. Kinetic studies of the Bacillus subtilis ALDH-like ycbD protein, which is involved in d-glucarate/d-galactarate utilization, reveal that it is a NADP+-dependent, alpha-ketoglutaric semialdehyde dehydrogenase (KGSADH). KGSADHs (EC 1.2.1.26) catalyze the NAD(P)+-dependent conversion of KGSA to alpha-ketoglutarate. Interestingly, the NADP+-dependent, tetrameric, 2,5-dioxopentanoate dehydrogenase (EC=1.2.1.26), an enzyme involved in the catabolic pathway for D-arabinose in Sulfolobus solfataricus, also clusters in this group. This CD shows a distant phylogenetic relationship to the Azospirillum brasilense KGSADH-II (-III) group.
Probab=98.47 E-value=4.4e-07 Score=65.43 Aligned_cols=51 Identities=18% Similarity=0.180 Sum_probs=44.9
Q ss_pred ceeecceEeeCCCCCeeeeecCC-CCCeeEEecCCCHHHHHHHHHHHHHhhhhc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPA-TEDKIADVAEADKVNPAKTIVMLISCQHLE 75 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~-tg~~l~~v~~as~edv~~ai~aA~~Af~~~ 75 (81)
+++|+|+|+.+. ..++++||+ |++++++++.++.+|++++|++|++||+.|
T Consensus 2 ~~~i~g~~~~~~--~~~~v~~P~~~~~~i~~~~~~~~~~v~~av~~A~~A~~~W 53 (473)
T cd07097 2 RNYIDGEWVAGG--DGEENRNPSDTSDVVGKYARASAEDADAAIAAAAAAFPAW 53 (473)
T ss_pred CceECCEEecCC--CCceeECCCCCCeEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 468999998653 336899999 499999999999999999999999999987
No 54
>cd07083 ALDH_P5CDH ALDH subfamily NAD+-dependent delta(1)-pyrroline-5-carboxylate dehydrogenase-like. ALDH subfamily of the NAD+-dependent, delta(1)-pyrroline-5-carboxylate dehydrogenases (P5CDH, EC=1.5.1.12). The proline catabolic enzymes, proline dehydrogenase and P5CDH catalyze the two-step oxidation of proline to glutamate. P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA). These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes. Monofunctional enzyme sequences such as those seen in the Bacillus RocA P5CDH are also present in this subfamily as well as the human ALDH4A1 P5CDH and the Drosophila Aldh17 P5CDH.
Probab=98.44 E-value=7.2e-07 Score=64.86 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=49.1
Q ss_pred ccccceeecceEeeCCCCCeeeeecCC-CCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 19 FLVFQLFINNAFVDAVSGRTFPTINPA-TEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 19 ~~~~~~~i~G~~~~~~~~~~~~v~nP~-tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+...+.+|+|+|+.+ +..+.++||. |++++++++.++.++|+++|++|++||+.|-
T Consensus 16 ~~~~~~~i~g~~~~~--~~~~~~~~P~~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 72 (500)
T cd07083 16 GRAYPLVIGGEWVDT--KERMVSVSPFAPSEVVGTTAKADKAEAEAALEAAWAAFKTWK 72 (500)
T ss_pred cccccceECCEEecC--CCceEeeCCCCCCcEEEEEcCCCHHHHHHHHHHHHHHHHHHh
Confidence 566778999999864 3568899998 6999999999999999999999999999874
No 55
>PRK11903 aldehyde dehydrogenase; Provisional
Probab=98.40 E-value=6.7e-07 Score=65.54 Aligned_cols=51 Identities=12% Similarity=0.216 Sum_probs=44.0
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhh-hhc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQ-HLE 75 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af-~~~ 75 (81)
+.+|+|+|..+. +..+.++||+|++++++++. +.+||++||++|++|| +.|
T Consensus 6 ~~~i~G~~~~~~-~~~~~~~nP~tge~l~~v~~-~~~dv~~Av~aA~~A~~~~W 57 (521)
T PRK11903 6 ANYVAGRWQAGS-GAGTPLFDPVTGEELVRVSA-TGLDLAAAFAFAREQGGAAL 57 (521)
T ss_pred hhhCCCEEEcCC-CCeeeeECCCCCCEEEEecC-ChHHHHHHHHHHHHhhhhhh
Confidence 368999998653 45689999999999999996 8899999999999995 766
No 56
>TIGR02278 PaaN-DH phenylacetic acid degradation protein paaN. This family includes paaN genes from Pseudomonas, Sinorhizobium, Rhodopseudomonas, Escherichia, Deinococcus and Corynebacterium. Another homology family (TIGR02288) includes several other species.
Probab=98.39 E-value=8.9e-07 Score=66.53 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=45.2
Q ss_pred ceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHh-hhhcc
Q psy1100 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISC-QHLEV 76 (81)
Q Consensus 23 ~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~A-f~~~~ 76 (81)
+.||+|+|..+. +..++++||+|++++++++.++ +||++||++|++| |+.|.
T Consensus 2 ~~~i~g~~~~~~-~~~~~v~nP~tg~~i~~~~~~~-~dv~~Av~~A~~aa~~~W~ 54 (663)
T TIGR02278 2 QSYLSGEWRTGQ-GEGVPVRDASTGEVLARVTSEG-LDVAAAVAWAREVGGPALR 54 (663)
T ss_pred ceeECCEEEcCC-CCeEeccCCCCCCEEEEEcCCc-HHHHHHHHHHHHhcchhhh
Confidence 468999998753 4569999999999999999999 6999999999995 88874
No 57
>cd07151 ALDH_HBenzADH NADP+-dependent p-hydroxybenzaldehyde dehydrogenase-like. NADP+-dependent, p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH) which catalyzes oxidation of p-hydroxybenzaldehyde to p-hydroxybenzoic acid and other related sequences are included in this CD.
Probab=98.37 E-value=1.1e-06 Score=63.32 Aligned_cols=49 Identities=22% Similarity=0.291 Sum_probs=42.0
Q ss_pred ceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 28 NAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 28 G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
|+|+.+..+..++++||+|++++++++.++.++++++|++|++||+.|-
T Consensus 1 g~~~~~~~~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 49 (465)
T cd07151 1 GEWRDGTSERTIDVLNPYTGETLAEIPAASKEDVDEAYRAAAAAQKEWA 49 (465)
T ss_pred CCceeCCCCCeEeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 4555543345689999999999999999999999999999999999873
No 58
>TIGR03250 PhnAcAld_DH putative phosphonoacetaldehyde dehydrogenase. It seems reasonably certain then, that this enzyme catalyzes the NAD-dependent oxidation of phosphonoacetaldehyde to phosphonoacetate, bridging the metabolic gap between PhnW and PhnA. We propose the name phosphonoacetaldehyde dehydrogenase and the gene symbol PhnY for this enzyme.
Probab=98.29 E-value=1.8e-06 Score=62.36 Aligned_cols=53 Identities=13% Similarity=0.091 Sum_probs=45.9
Q ss_pred cceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 22 ~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.+.+|+|+|... +..+++.||+|++++++++.++.+|+++||++|++||+..-
T Consensus 4 ~~~~i~g~~~~~--~~~~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~a~~~~~ 56 (472)
T TIGR03250 4 EALRIAGEKVSR--DRVIEVRYPYNGTVVGTVPKASVDDVRRAFAIAAAYRPTLT 56 (472)
T ss_pred CCceECCEEecC--CCeEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhCC
Confidence 457899998853 45689999999999999999999999999999999986443
No 59
>PF00171 Aldedh: Aldehyde dehydrogenase family; InterPro: IPR015590 Aldehyde dehydrogenases (1.2.1.3 from EC and 1.2.1.5 from EC) are enzymes that oxidize a wide variety of aliphatic and aromatic aldehydes using NADP as a cofactor. In mammals at least four different forms of the enzyme are known []: class-1 (or Ald C) a tetrameric cytosolic enzyme, class-2 (or Ald M) a tetrameric mitochondrial enzyme, class- 3 (or Ald D) a dimeric cytosolic enzyme, and class IV a microsomal enzyme. Aldehyde dehydrogenases have also been sequenced from fungal and bacterial species. A number of enzymes are known to be evolutionary related to aldehyde dehydrogenases. A glutamic acid and a cysteine residue have been implicated in the catalytic activity of mammalian aldehyde dehydrogenase. These residues are conserved in all the enzymes of this entry. Some of the proteins in this entry are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Alt a 10 and Cla h 3.; GO: 0016491 oxidoreductase activity, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 3R31_A 3HAZ_A 1UXQ_A 1UXP_A 1UXR_A 1UXU_A 1UXN_A 1KY8_A 1UXT_A 1UXV_A ....
Probab=98.17 E-value=3.5e-06 Score=60.56 Aligned_cols=46 Identities=24% Similarity=0.290 Sum_probs=40.4
Q ss_pred EeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 30 FVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 30 ~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
|+.+. +..++++||.|++++++++.++.++++++|++|++||+.|-
T Consensus 1 w~~~~-~~~~~v~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 46 (462)
T PF00171_consen 1 WVSSE-SETFDVINPATGEVIGEVPSATAEDVDRAVEAARAAFKEWS 46 (462)
T ss_dssp EEE-T-SSEEEEEETTTECEEEEEEEBSHHHHHHHHHHHHHHHHHHT
T ss_pred CcCCC-CCEEcCCCCCCcCEEEEEcCCCHHHHHHHHHHHHHHHHhhh
Confidence 55554 36799999999999999999999999999999999999773
No 60
>PRK13968 putative succinate semialdehyde dehydrogenase; Provisional
Probab=98.07 E-value=8.9e-06 Score=58.76 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=37.9
Q ss_pred CCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 36 GRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 36 ~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.+.+.++||+|++++++++.++.+++++++++|++||+.|.
T Consensus 6 ~~~~~~~nP~t~~~i~~~~~~~~~~v~~av~~A~~a~~~w~ 46 (462)
T PRK13968 6 ATHAISVNPATGEQLSVLPWAGADDIENALQLAAAGFRDWR 46 (462)
T ss_pred CCceEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 35678999999999999999999999999999999999884
No 61
>cd07148 ALDH_RL0313 Uncharacterized ALDH ( RL0313) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (locus RL0313) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=98.01 E-value=8.2e-06 Score=58.71 Aligned_cols=37 Identities=16% Similarity=0.064 Sum_probs=34.8
Q ss_pred eeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 40 PTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 40 ~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+++||+|++++++++.++.++++++|++|++||+.||
T Consensus 2 ~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~a~~~~~ 38 (455)
T cd07148 2 EVVNPFDLKPIGEVPTVDWAAIDKALDTAHALFLDRN 38 (455)
T ss_pred CccCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHhhcc
Confidence 5789999999999999999999999999999999864
No 62
>PRK09407 gabD2 succinic semialdehyde dehydrogenase; Reviewed
Probab=98.00 E-value=1.7e-05 Score=58.16 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=42.1
Q ss_pred eecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 25 FINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 25 ~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++.+.+.. .+..++++||+|++++++++.++.++++++|++|++||+.|-
T Consensus 22 ~~~~~~~~--~~~~~~v~nP~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 71 (524)
T PRK09407 22 LTARVDGA--AGPTREVTAPFTGEPLATVPVSTAADVEAAFARARAAQRAWA 71 (524)
T ss_pred HHhhcCCC--CCCEEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHc
Confidence 34544432 356789999999999999999999999999999999999874
No 63
>cd07109 ALDH_AAS00426 Uncharacterized Saccharopolyspora spinosa aldehyde dehydrogenase (AAS00426)-like. Uncharacterized aldehyde dehydrogenase of Saccharopolyspora spinosa (AAS00426) and other similar sequences, are present in this CD.
Probab=97.99 E-value=9.7e-06 Score=58.19 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=35.6
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhccccc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVFNL 79 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~~~ 79 (81)
++||+|++++++++.++.+|+++++++|++||+.|+.++
T Consensus 1 ~~~P~tg~~i~~~~~~~~~dv~~av~~a~~A~~~~~~~~ 39 (454)
T cd07109 1 VFDPSTGEVFARIARGGAADVDRAVQAARRAFESGWLRL 39 (454)
T ss_pred CcCCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 469999999999999999999999999999999987443
No 64
>cd07150 ALDH_VaniDH_like Pseudomonas putida vanillin dehydrogenase-like. Vanillin dehydrogenase (Vdh, VaniDH) involved in the metabolism of ferulic acid and other related sequences are included in this CD. The E. coli vanillin dehydrogenase (LigV) preferred NAD+ to NADP+ and exhibited a broad substrate preference, including vanillin, benzaldehyde, protocatechualdehyde, m-anisaldehyde, and p-hydroxybenzaldehyde.
Probab=97.96 E-value=1.1e-05 Score=57.75 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=34.8
Q ss_pred eeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 40 PTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 40 ~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+++||+||+++++++.++.++++++|++|++||+.|-
T Consensus 2 ~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 38 (451)
T cd07150 2 DDLNPADGSVYARVAVGSRQDAERAIAAAYDAFPAWA 38 (451)
T ss_pred CccCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999874
No 65
>cd07089 ALDH_CddD-AldA-like Rhodococcus ruber 6-oxolauric acid dehydrogenase-like and related proteins. The 6-oxolauric acid dehydrogenase (CddD) from Rhodococcus ruber SC1 which converts 6-oxolauric acid to dodecanedioic acid; and the aldehyde dehydrogenase (locus SSP0762) from Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 and also, the Mycobacterium tuberculosis H37Rv ALDH AldA (locus Rv0768) sequence; and other similar sequences, are included in this CD.
Probab=97.96 E-value=1.2e-05 Score=57.85 Aligned_cols=38 Identities=24% Similarity=0.286 Sum_probs=35.5
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcccc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLEVFN 78 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~~ 78 (81)
++||+|++++++++.++.+|++++|++|++||+.|-|+
T Consensus 1 ~~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~w~ 38 (459)
T cd07089 1 VINPATEEVIGTAPDAGAADVDAAIAAARRAFDTGDWS 38 (459)
T ss_pred CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHhhhhc
Confidence 46999999999999999999999999999999999764
No 66
>PRK09406 gabD1 succinic semialdehyde dehydrogenase; Reviewed
Probab=97.93 E-value=1.8e-05 Score=57.08 Aligned_cols=38 Identities=18% Similarity=0.108 Sum_probs=36.0
Q ss_pred eeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 39 FPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 39 ~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+.+.||+|++++++++.++.++++++|++|++||+.|-
T Consensus 3 ~~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 40 (457)
T PRK09406 3 IATINPATGETVKTFTALTDDEVDAAIARAHARFRDYR 40 (457)
T ss_pred eeeECCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999999999999999999999999884
No 67
>cd07145 ALDH_LactADH_F420-Bios Methanocaldococcus jannaschii NAD+-dependent lactaldehyde dehydrogenase-like. NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) involved the biosynthesis of coenzyme F(420) in Methanocaldococcus jannaschii through the oxidation of lactaldehyde to lactate and generation of NAPH, and similar sequences are included in this CD.
Probab=97.87 E-value=2e-05 Score=56.64 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=34.9
Q ss_pred eeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 40 PTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 40 ~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+++||.|++++++++.++.+|+++++++|++||+.|-
T Consensus 2 ~~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 38 (456)
T cd07145 2 EVRNPANGEVIDTVPSLSREEVREAIEVAEKAKDVMS 38 (456)
T ss_pred CccCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999874
No 68
>cd07147 ALDH_F21_RNP123 Aldehyde dehydrogenase family 21A1-like. Aldehyde dehydrogenase ALDH21A1 (gene name RNP123) was first described in the moss Tortula ruralis and is believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and ALDH21A1 expression represents a unique stress tolerance mechanism. So far, of plants, only the bryophyte sequence has been observed, but similar protein sequences from bacteria and archaea are also present in this CD.
Probab=97.85 E-value=2.2e-05 Score=56.28 Aligned_cols=38 Identities=21% Similarity=0.169 Sum_probs=35.2
Q ss_pred eeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 39 FPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 39 ~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++++||+|++++++++.++.++++++|++|++||+.|-
T Consensus 1 ~~~~~P~t~~~~~~~~~~~~~~v~~av~~A~~A~~~w~ 38 (452)
T cd07147 1 LEVTNPYTGEVVARVALAGPDDIEEAIAAAVKAFRPMR 38 (452)
T ss_pred CCccCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999873
No 69
>cd07094 ALDH_F21_LactADH-like ALDH subfamily: NAD+-dependent, lactaldehyde dehydrogenase, ALDH family 21 A1, and related proteins. ALDH subfamily which includes Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123), and NAD+-dependent, lactaldehyde dehydrogenase (EC=1.2.1.22) and like sequences.
Probab=97.84 E-value=2.4e-05 Score=56.07 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=34.7
Q ss_pred eeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 40 PTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 40 ~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+++||+|++++++++.++.+|+++++++|++||+.|-
T Consensus 2 ~~~~P~t~~~~~~~~~~~~~~v~~av~~a~~A~~~w~ 38 (453)
T cd07094 2 DVHNPYDGEVIGKVPADDRADAEEALATARAGAENRR 38 (453)
T ss_pred CccCCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999873
No 70
>cd07149 ALDH_y4uC Uncharacterized ALDH (y4uC) with similarity to Tortula ruralis aldehyde dehydrogenase ALDH21A1. Uncharacterized aldehyde dehydrogenase (ORF name y4uC) with sequence similarity to the moss Tortula ruralis aldehyde dehydrogenase ALDH21A1 (RNP123) believed to play an important role in the detoxification of aldehydes generated in response to desiccation- and salinity-stress, and similar sequences are included in this CD.
Probab=97.81 E-value=2.9e-05 Score=55.56 Aligned_cols=38 Identities=18% Similarity=0.139 Sum_probs=35.2
Q ss_pred eeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 39 FPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 39 ~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++++||+|++++++++.++.+++++++++|++||+.|-
T Consensus 1 ~~~~~P~tg~~~~~~~~~~~~~v~~av~~A~~A~~~w~ 38 (453)
T cd07149 1 IEVISPYDGEVIGRVPVASEEDVEKAIAAAKEGAKEMK 38 (453)
T ss_pred CCccCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 35789999999999999999999999999999999874
No 71
>PRK11904 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=97.77 E-value=4.4e-05 Score=60.09 Aligned_cols=50 Identities=20% Similarity=0.207 Sum_probs=41.9
Q ss_pred ccceeecceEeeCCCCCeeeeecCCCCC-eeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 21 VFQLFINNAFVDAVSGRTFPTINPATED-KIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 21 ~~~~~i~G~~~~~~~~~~~~v~nP~tg~-~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
..+.+|+| .+..+.+.||+|++ ++++++.++.++|++||++|++||+.|.
T Consensus 552 ~~~~~i~g------~~~~~~v~nP~~~~~~vg~v~~a~~~~v~~Ai~aA~~A~~~W~ 602 (1038)
T PRK11904 552 QAGPIING------EGEARPVVSPADRRRVVGEVAFADAEQVEQALAAARAAFPAWS 602 (1038)
T ss_pred eecceEcC------CCCeEEEECCCCCCeeEEEEeCCCHHHHHHHHHHHHHHHHHhc
Confidence 33445666 24568999999988 9999999999999999999999999874
No 72
>cd07112 ALDH_GABALDH-PuuC Escherichia coli NADP+-dependent gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase PuuC-like. NADP+-dependent, gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (GABALDH) PuuC of Escherichia coli which catalyzes the conversion of putrescine to 4-aminobutanoate and other similar sequences are present in this CD.
Probab=97.75 E-value=6.4e-05 Score=54.23 Aligned_cols=37 Identities=32% Similarity=0.422 Sum_probs=35.2
Q ss_pred eeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhh
Q psy1100 38 TFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHL 74 (81)
Q Consensus 38 ~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~ 74 (81)
.++++||+|++++++++.++.++++++|++|++||+.
T Consensus 3 ~~~~~~P~t~~~i~~~~~~~~~~v~~av~~a~~A~~~ 39 (462)
T cd07112 3 TFATINPATGRVLAEVAACDAADVDRAVAAARRAFES 39 (462)
T ss_pred eEEeECCCCCCEEEEEeCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999999999999999999985
No 73
>cd07106 ALDH_AldA-AAD23400 Streptomyces aureofaciens putative aldehyde dehydrogenase AldA (AAD23400)-like. Putative aldehyde dehydrogenase, AldA, from Streptomyces aureofaciens (locus AAD23400) and other similar sequences are present in this CD.
Probab=97.73 E-value=5.1e-05 Score=54.39 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=33.8
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++||+||+++++++.++.+|+++++++|++||+.|-
T Consensus 1 ~~~P~tg~~~~~~~~~~~~~v~~av~~a~~a~~~w~ 36 (446)
T cd07106 1 VINPATGEVFASAPVASEAQLDQAVAAAKAAFPGWS 36 (446)
T ss_pred CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999874
No 74
>cd07092 ALDH_ABALDH-YdcW Escherichia coli NAD+-dependent gamma-aminobutyraldehyde dehydrogenase YdcW-like. NAD+-dependent, tetrameric, gamma-aminobutyraldehyde dehydrogenase (ABALDH), YdcW of Escherichia coli K12, catalyzes the oxidation of gamma-aminobutyraldehyde to gamma-aminobutyric acid. ABALDH can also oxidize n-alkyl medium-chain aldehydes, but with a lower catalytic efficiency.
Probab=97.72 E-value=5.2e-05 Score=54.31 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=34.0
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++||+|++++++++.++.+|+++++++|++||+.|-
T Consensus 1 ~~~P~t~~~i~~~~~~~~~~v~~av~~a~~a~~~w~ 36 (450)
T cd07092 1 VVDPATGEEIATVPDASAADVDAAVAAAHAAFPSWR 36 (450)
T ss_pred CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999884
No 75
>cd07090 ALDH_F9_TMBADH NAD+-dependent 4-trimethylaminobutyraldehyde dehydrogenase, ALDH family 9A1. NAD+-dependent, 4-trimethylaminobutyraldehyde dehydrogenase (TMABADH, EC=1.2.1.47), also known as aldehyde dehydrogenase family 9 member A1 (ALDH9A1) in humans, is a cytosolic tetramer which catalyzes the oxidation of gamma-aminobutyraldehyde involved in 4-aminobutyric acid (GABA) biosynthesis and also oxidizes betaine aldehyde (gamma-trimethylaminobutyraldehyde) which is involved in carnitine biosynthesis.
Probab=97.72 E-value=5.2e-05 Score=54.49 Aligned_cols=36 Identities=22% Similarity=0.138 Sum_probs=34.0
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++||+|++++++++.++.++++++|+.|++||+.|-
T Consensus 1 ~~~P~t~~~i~~~~~~~~~~v~~av~~A~~a~~~w~ 36 (457)
T cd07090 1 VIEPATGEVLATVHCAGAEDVDLAVKSAKAAQKEWS 36 (457)
T ss_pred CcCCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999884
No 76
>cd07110 ALDH_F10_BADH Arabidopsis betaine aldehyde dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like. Present in this CD are the Arabidopsis betaine aldehyde dehydrogenase (BADH) 1 (chloroplast) and 2 (mitochondria), also known as, aldehyde dehydrogenase family 10 member A8 and aldehyde dehydrogenase family 10 member A9, respectively, and are putative dehydration- and salt-inducible BADHs (EC 1.2.1.8) that catalyze the oxidation of betaine aldehyde to the compatible solute glycine betaine.
Probab=97.71 E-value=5.4e-05 Score=54.41 Aligned_cols=36 Identities=22% Similarity=0.186 Sum_probs=34.0
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++||.|++++++++.++.+++++++++|++||+.|-
T Consensus 1 ~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 36 (456)
T cd07110 1 VINPATEATIGEIPAATAEDVDAAVRAARRAFPRWK 36 (456)
T ss_pred CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999884
No 77
>cd07108 ALDH_MGR_2402 Magnetospirillum NAD(P)+-dependent aldehyde dehydrogenase MSR-1-like. NAD(P)+-dependent aldehyde dehydrogenase of Magnetospirillum gryphiswaldense MSR-1 (MGR_2402) , and other similar sequences, are present in this CD.
Probab=97.71 E-value=5.6e-05 Score=54.33 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=34.0
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++||+|++++++++.++.+|+++++++|++||+.|-
T Consensus 1 ~~~P~t~~~~~~~~~~~~~~v~~av~~a~~a~~~w~ 36 (457)
T cd07108 1 VINPATGQVIGEVPRSRAADVDRAVAAAKAAFPEWA 36 (457)
T ss_pred CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999999999999999999999874
No 78
>cd07107 ALDH_PhdK-like Nocardioides 2-carboxybenzaldehyde dehydrogenase, PhdK-like. Nocardioides sp. strain KP72-carboxybenzaldehyde dehydrogenase (PhdK), an enzyme involved in phenanthrene degradation, and other similar sequences, are present in this CD.
Probab=97.69 E-value=6e-05 Score=54.21 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=33.9
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++||+|++++++++.++.+|++++|++|++||+.|-
T Consensus 1 ~~~p~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 36 (456)
T cd07107 1 VINPATGQVLARVPAASAADVDRAVAAARAAFPEWR 36 (456)
T ss_pred CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999874
No 79
>cd07120 ALDH_PsfA-ACA09737 Pseudomonas putida aldehyde dehydrogenase PsfA (ACA09737)-like. Included in this CD is the aldehyde dehydrogenase (PsfA, locus ACA09737) of Pseudomonas putida involved in furoic acid metabolism. Transcription of psfA was induced in response to 2-furoic acid, furfuryl alcohol, and furfural.
Probab=97.68 E-value=6.3e-05 Score=54.30 Aligned_cols=35 Identities=20% Similarity=0.233 Sum_probs=32.8
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLE 75 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~ 75 (81)
++||+|++++++++.++.+||++||+.|++||+.+
T Consensus 1 ~~nP~t~~~i~~~~~~~~~~v~~av~~A~~a~~~~ 35 (455)
T cd07120 1 SIDPATGEVIGTYADGGVAEAEAAIAAARRAFDET 35 (455)
T ss_pred CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHhcCCC
Confidence 46999999999999999999999999999999863
No 80
>TIGR01780 SSADH succinate-semialdehyde dehydrogenase. SSADH enzyme belongs to the aldehyde dehydrogenase family (pfam00171), sharing a common evolutionary origin and enzymatic mechanism with lactaldehyde dehydrogenase. Like in lactaldehyde dehydrogenase and succinate semialdehyde dehydrogenase, the mammalian catalytic glutamic acid and cysteine residues are conserved in all the enzymes of this family (PS00687, PS00070).
Probab=97.65 E-value=7.8e-05 Score=53.58 Aligned_cols=36 Identities=19% Similarity=0.139 Sum_probs=33.8
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++||.|++++++++.++.++++.++++|++||+.|-
T Consensus 1 ~~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~ 36 (448)
T TIGR01780 1 VYNPATGEIIGTVPDQGVEEAEAAIRAAYEAFKTWK 36 (448)
T ss_pred CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999874
No 81
>cd07103 ALDH_F5_SSADH_GabD Mitochondrial succinate-semialdehyde dehydrogenase and ALDH family members 5A1 and 5F1-like. Succinate-semialdehyde dehydrogenase, mitochondrial (SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent oxidation of succinate semialdehyde (SSA) to succinate. This group includes the human aldehyde dehydrogenase family 5 member A1 (ALDH5A1) which is a mitochondrial homotetramer that converts SSA to succinate in the last step of 4-aminobutyric acid (GABA) catabolism. This CD also includes the Arabidopsis SSADH gene product ALDH5F1. Mutations in this gene result in the accumulation of H2O2, suggesting a role in plant defense against the environmental stress of elevated reactive oxygen species.
Probab=97.63 E-value=8.9e-05 Score=53.09 Aligned_cols=36 Identities=25% Similarity=0.271 Sum_probs=33.8
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++||+|++++++++.++.+++++++++|++||+.|-
T Consensus 1 ~~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~ 36 (451)
T cd07103 1 VINPATGEVIGEVPDAGAADADAAIDAAAAAFKTWR 36 (451)
T ss_pred CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999999999999999999874
No 82
>cd07101 ALDH_SSADH2_GabD2 Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 2-like. Succinate-semialdehyde dehydrogenase 2 (SSADH2) and similar proteins are in this CD. SSADH1 (GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde to succinate. SSADH activity in Mycobacterium tuberculosis is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731), however ,the Vmax of GabD1 was shown to be much higher than that of GabD2, and GabD2 (SSADH2) is likely to serve physiologically as a dehydrogenase for a different aldehyde(s).
Probab=97.62 E-value=8.7e-05 Score=53.37 Aligned_cols=35 Identities=9% Similarity=0.120 Sum_probs=33.0
Q ss_pred ecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 42 INPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 42 ~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.||+||+++++++.++.+|++++|++|++||+.|-
T Consensus 1 ~~P~tg~~i~~~~~~~~~~v~~av~~A~~a~~~w~ 35 (454)
T cd07101 1 EAPFTGEPLGELPQSTPADVEAAFARARAAQRAWA 35 (454)
T ss_pred CcCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999874
No 83
>cd07099 ALDH_DDALDH Methylomonas sp. 4,4'-diapolycopene-dialdehyde dehydrogenase-like. The 4,4'-diapolycopene-dialdehyde dehydrogenase (DDALDH) involved in C30 carotenoid synthesis in Methylomonas sp. strain 16a and other similar sequences are present in this CD. DDALDH converts 4,4'-diapolycopene-dialdehyde into 4,4'-diapolycopene-diacid.
Probab=97.60 E-value=0.0001 Score=52.90 Aligned_cols=35 Identities=23% Similarity=0.248 Sum_probs=33.0
Q ss_pred ecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 42 INPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 42 ~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+||+||+++++++.++.+++++++++|++||+.|-
T Consensus 1 ~~P~t~~~~~~~~~~~~~~v~~av~~a~~a~~~w~ 35 (453)
T cd07099 1 RNPATGEVLGEVPVTDPAEVAAAVARARAAQRAWA 35 (453)
T ss_pred CCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999874
No 84
>cd07093 ALDH_F8_HMSADH Human aldehyde dehydrogenase family 8 member A1-like. In humans, the aldehyde dehydrogenase family 8 member A1 (ALDH8A1) protein functions to convert 9-cis-retinal to 9-cis-retinoic acid and has a preference for NAD+. Also included in this CD is the 2-hydroxymuconic semialdehyde dehydrogenase (HMSADH) which catalyzes the conversion of 2-hydroxymuconic semialdehyde to 4-oxalocrotonate, a step in the meta cleavage pathway of aromatic hydrocarbons in bacteria. Such HMSADHs seen here are: XylG of the TOL plasmid pWW0 of Pseudomonas putida, TomC of Burkholderia cepacia G4, and AphC of Comamonas testosterone.
Probab=97.60 E-value=0.0001 Score=52.93 Aligned_cols=36 Identities=19% Similarity=0.158 Sum_probs=33.8
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++||+|++++++++.++.+++++++++|++||+.|.
T Consensus 1 ~~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 36 (455)
T cd07093 1 NFNPATGEVLAKVPEGGAAEVDAAVAAAKEAFPGWS 36 (455)
T ss_pred CcCCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHHh
Confidence 369999999999999999999999999999999884
No 85
>cd07098 ALDH_F15-22 Aldehyde dehydrogenase family 15A1 and 22A1-like. Aldehyde dehydrogenase family members ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1 (Arabidopsis thaliana, EC=1.2.1.3), and similar sequences, are in this CD. Significant improvement of stress tolerance in tobacco plants was observed by overexpressing the ALDH22A1 gene from maize (Zea mays) and was accompanied by a reduction of malondialdehyde derived from cellular lipid peroxidation.
Probab=97.58 E-value=0.00011 Score=52.97 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=32.9
Q ss_pred ecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 42 INPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 42 ~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+||.||+++++++.++.+|+++++++|++||+.|-
T Consensus 1 ~~P~tg~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 35 (465)
T cd07098 1 YDPATGQHLGSVPADTPEDVDEAIAAARAAQREWA 35 (465)
T ss_pred CCCCCCCeeEEeeCCCHHHHHHHHHHHHHHHHHhc
Confidence 48999999999999999999999999999999873
No 86
>cd07102 ALDH_EDX86601 Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (EDX86601). Uncharacterized aldehyde dehydrogenase of Synechococcus sp. PCC 7335 (locus EDX86601) and other similar sequences, are present in this CD.
Probab=97.54 E-value=0.00014 Score=52.21 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=33.2
Q ss_pred ecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 42 INPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 42 ~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+||+|++++++++.++.++++++|+.|++||+.|-
T Consensus 1 ~~P~t~~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 35 (452)
T cd07102 1 ISPIDGSVIAERPLASLEAVRAALERARAAQKGWR 35 (452)
T ss_pred CCCCCCCEEEEEcCCCHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999999999999999999885
No 87
>cd07115 ALDH_HMSADH_HapE Pseudomonas fluorescens 4-hydroxymuconic semialdehyde dehydrogenase-like. 4-hydroxymuconic semialdehyde dehydrogenase (HapE, EC=1.2.1.61) of Pseudomonas fluorescens ACB involved in 4-hydroxyacetophenone degradation, and putative hydroxycaproate semialdehyde dehydrogenase (ChnE) of Brachymonas petroleovorans involved in cyclohexane metabolism, and other similar sequences, are present in this CD.
Probab=97.50 E-value=0.00017 Score=51.87 Aligned_cols=35 Identities=26% Similarity=0.242 Sum_probs=33.4
Q ss_pred ecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 42 INPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 42 ~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+||+|++++++++.++.+++++++++|++||+.|-
T Consensus 2 ~~P~t~~~i~~~~~~~~~~v~~av~~a~~A~~~w~ 36 (453)
T cd07115 2 LNPATGELIARVAQASAEDVDAAVAAARAAFEAWS 36 (453)
T ss_pred CCCCCCCEEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 59999999999999999999999999999999984
No 88
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=97.46 E-value=0.00029 Score=56.35 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=41.4
Q ss_pred eeecceEeeCCCCCeeeeecCCC-CCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 24 LFINNAFVDAVSGRTFPTINPAT-EDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 24 ~~i~G~~~~~~~~~~~~v~nP~t-g~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.+|+|.... +..++++||+| ++++++++.++.+++++||++|++||+.|.
T Consensus 557 ~~i~g~~~~---~~~~~v~nP~~~~~~vg~v~~a~~~~v~~Av~aA~~A~~~W~ 607 (1208)
T PRK11905 557 PLLAGGDVD---GGTRPVLNPADHDDVVGTVTEASAEDVERALAAAQAAFPEWS 607 (1208)
T ss_pred ceecccccc---CCeeeEECCCCCCceEEEEeCCCHHHHHHHHHHHHHHHHHhh
Confidence 345554332 34588999999 999999999999999999999999999884
No 89
>cd07118 ALDH_SNDH Gluconobacter oxydans L-sorbosone dehydrogenase-like. Included in this CD is the L-sorbosone dehydrogenase (SNDH) from Gluconobacter oxydans UV10. In G. oxydans, D-sorbitol is converted to 2-keto-L-gulonate (a precursor of L-ascorbic acid) in sequential oxidation steps catalyzed by a FAD-dependent, L-sorbose dehydrogenase and an NAD(P)+-dependent, L-sorbosone dehydrogenase.
Probab=97.41 E-value=0.00024 Score=51.21 Aligned_cols=36 Identities=14% Similarity=0.061 Sum_probs=33.1
Q ss_pred ecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhccc
Q psy1100 42 INPATEDKIADVAEADKVNPAKTIVMLISCQHLEVF 77 (81)
Q Consensus 42 ~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~~ 77 (81)
.||+|++.+++++.++.+|++++|+.|++||+.+.|
T Consensus 2 ~~P~t~~~i~~~~~~~~~~v~~av~~A~~a~~~~~w 37 (454)
T cd07118 2 RSPAHGVVVARYAEGTVEDVDAAVAAARKAFDKGPW 37 (454)
T ss_pred CCCCCCCEEEEEeCCCHHHHHHHHHHHHHHcCCCcc
Confidence 589999999999999999999999999999987444
No 90
>PRK11809 putA trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=97.39 E-value=0.0004 Score=55.94 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=37.5
Q ss_pred CCeeeeecCCC-CCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 36 GRTFPTINPAT-EDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 36 ~~~~~v~nP~t-g~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
+..++++||+| ++++++++.++.++|++||++|++||+.|.
T Consensus 658 ~~~~~v~nPa~~~~~vg~v~~a~~~dv~~Av~aA~~A~~~W~ 699 (1318)
T PRK11809 658 GEMSPVINPADPRDIVGYVREATPAEVEQALESAVNAAPIWF 699 (1318)
T ss_pred CCEEEeECCCCCCeeEEEEeCCCHHHHHHHHHHHHHHHHHHh
Confidence 45689999998 789999999999999999999999998874
No 91
>cd07114 ALDH_DhaS Uncharacterized Candidatus pelagibacter aldehyde dehydrogenase, DhaS-like. Uncharacterized aldehyde dehydrogenase from Candidatus pelagibacter (DhaS) and other related sequences are present in this CD.
Probab=97.23 E-value=0.0005 Score=49.48 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=32.0
Q ss_pred eecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhh
Q psy1100 41 TINPATEDKIADVAEADKVNPAKTIVMLISCQHL 74 (81)
Q Consensus 41 v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~ 74 (81)
++||+|++++++++.++.+++++++++|++||+.
T Consensus 1 ~~~P~tg~~i~~~~~~~~~~v~~av~~a~~a~~~ 34 (457)
T cd07114 1 SINPATGEPWARVPEASAADVDRAVAAARAAFEG 34 (457)
T ss_pred CcCCCCCCEEEEEeCCCHHHHHHHHHHHHHHcCC
Confidence 4699999999999999999999999999999975
No 92
>KOG2455|consensus
Probab=97.12 E-value=0.00043 Score=50.42 Aligned_cols=66 Identities=23% Similarity=0.131 Sum_probs=51.7
Q ss_pred hcccccCCccccccceeecceEeeCCCCCeeeeecCCC-CCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 9 ERGSAALAPSFLVFQLFINNAFVDAVSGRTFPTINPAT-EDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 9 ~~~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~v~nP~t-g~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
|..+......+...+..|+|+.+... ......+|.+ +..++.+..++..+|+.||++|.+|++.|+
T Consensus 47 ~~A~~~~~~~~~evP~vIg~~~v~t~--~~q~q~~P~~hq~~lA~~~yA~~k~ie~AIkaAl~a~~~W~ 113 (561)
T KOG2455|consen 47 EKALKELQKRPLEVPLVIGDKEVYTN--DEQYQVCPHNHQHVLAKVYYATKKQIEKAIKAALSAQKTWE 113 (561)
T ss_pred HHHHHHHhcCceeccEEECCeeeecC--CcccccCCchhhhhhhheeeccHHHHHHHHHHHHhhcCccc
Confidence 34444444556778999999987653 3355677877 667899999999999999999999999886
No 93
>cd07127 ALDH_PAD-PaaZ Phenylacetic acid degradation proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida)-like. Phenylacetic acid degradation (PAD) proteins PaaZ (Escherichia coli) and PaaN (Pseudomonas putida) are putative aromatic ring cleavage enzymes of the aerobic PA catabolic pathway. PaaZ mutants were defective for growth with PA as a sole carbon source due to interruption of the putative ring opening system. This CD is limited to bacterial monofunctional enzymes.
Probab=97.06 E-value=0.001 Score=49.44 Aligned_cols=38 Identities=11% Similarity=0.016 Sum_probs=34.3
Q ss_pred CCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhc
Q psy1100 35 SGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLE 75 (81)
Q Consensus 35 ~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~ 75 (81)
.+....+.||+|++++++++.+ +++++|++|++||+.|
T Consensus 63 ~~~~~~~~~P~~~~l~~~~~~a---dv~~ai~aA~~A~~~W 100 (549)
T cd07127 63 SGWVGGEVSPYGVELGVTYPQC---DPDALLAAARAAMPGW 100 (549)
T ss_pred CCCeeeeECCCCCcEEEEEchH---HHHHHHHHHHHHHHHH
Confidence 3567889999999999999988 9999999999999987
No 94
>KOG2453|consensus
Probab=96.88 E-value=0.00083 Score=47.75 Aligned_cols=64 Identities=19% Similarity=0.112 Sum_probs=48.9
Q ss_pred ccccCCccccc--cceeecceEeeCCCCCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 11 GSAALAPSFLV--FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 11 ~~~~~~~~~~~--~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.|.+++..-+. ..-...|+|.. .+..+...+|+++++++.+..++.+|.+.++..|++|.+.|-
T Consensus 7 ~y~flkelglte~n~gvy~gkw~a--~g~vv~t~~pann~pia~v~~asv~dye~~~k~a~ea~kiw~ 72 (507)
T KOG2453|consen 7 KYGFLKELGLTENNAGVYHGKWAA--SGQVVQTFAPANNSPIANVQNASVQDYEIAIKEAKEAYKIWC 72 (507)
T ss_pred hhHHHHHhCCcccccceeeeeecc--CCceeEeecCCCCChhHHHhhccHHHHHHHHHHHHHHHHHHh
Confidence 34444444333 22235667754 367788999999999999999999999999999999999883
No 95
>KOG2454|consensus
Probab=96.85 E-value=0.0021 Score=46.50 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=38.1
Q ss_pred CCeeeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 36 GRTFPTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 36 ~~~~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
...+..+.|+||+.++.++..++.||++-|..|++||+.|-
T Consensus 63 ~~~vqCycPatg~yLG~fp~~~~tdide~v~la~kAQktW~ 103 (583)
T KOG2454|consen 63 DKKVQCYCPATGKYLGYFPALSPTDIDERVTLARKAQKTWA 103 (583)
T ss_pred CCceEEecCCCcceeeecccCChhhHHHHHHHHHHHHhhhh
Confidence 45688999999999999999999999999999999999984
No 96
>cd07146 ALDH_PhpJ Streptomyces putative phosphonoformaldehyde dehydrogenase PhpJ-like. Putative phosphonoformaldehyde dehydrogenase (PhpJ), an aldehyde dehydrogenase homolog reportedly involved in the biosynthesis of phosphinothricin tripeptides in Streptomyces viridochromogenes DSM 40736, and similar sequences are included in this CD.
Probab=96.80 E-value=0.0013 Score=47.36 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=29.9
Q ss_pred eeecCCCCCeeEEecCCCHHHHHHHHHHHHHh
Q psy1100 40 PTINPATEDKIADVAEADKVNPAKTIVMLISC 71 (81)
Q Consensus 40 ~v~nP~tg~~l~~v~~as~edv~~ai~aA~~A 71 (81)
+++||+|++++++++.++.+++++++++|+++
T Consensus 2 ~~~~P~tg~~i~~~~~~~~~~v~~av~~A~~~ 33 (451)
T cd07146 2 EVRNPYTGEVVGTVPAGTEEALREALALAASY 33 (451)
T ss_pred CccCCCCCCEEEEEcCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999875
No 97
>COG4230 Delta 1-pyrroline-5-carboxylate dehydrogenase [Energy production and conversion]
Probab=96.49 E-value=0.0031 Score=47.42 Aligned_cols=50 Identities=26% Similarity=0.417 Sum_probs=40.7
Q ss_pred eecceEeeCCCCCeeeeecCCC-CCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 25 FINNAFVDAVSGRTFPTINPAT-EDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 25 ~i~G~~~~~~~~~~~~v~nP~t-g~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.++|+.... +...++.||++ .+.++++..++++|+++|++.|..+++.|.
T Consensus 117 ~~~~~~~~~--g~~~pV~nPad~~dvVG~V~ea~~~~v~~A~~~A~~a~p~W~ 167 (769)
T COG4230 117 IVNGAPVAG--GEPRPVINPADPDDIVGTVTEATEADVEQALEAAVAAAPIWS 167 (769)
T ss_pred ccCCCcCCC--CCcccccCCCCHhHCeeeeeecCHHHHHHHHHHHHhhCcccc
Confidence 455554432 45678999998 557799999999999999999999999985
No 98
>TIGR02288 PaaN_2 phenylacetic acid degradation protein paaN. This family includes sequences from Burkholderia, Bordetella, Streptomyces. Other PaaN enzymes are represented by a separate model, TIGR02278.
Probab=96.23 E-value=0.0067 Score=45.24 Aligned_cols=34 Identities=6% Similarity=-0.169 Sum_probs=30.1
Q ss_pred eeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 40 PTINPATEDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 40 ~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.=+||+|++++++++.++. +++|++|++||+.|.
T Consensus 68 ~e~~P~t~~~~~~~~~~~~---~~av~aA~~A~~~W~ 101 (551)
T TIGR02288 68 GERSPYGVELGVTYPQCDG---DALLDAAHAALPGWR 101 (551)
T ss_pred cccCCCCCCEEEEEcCCCH---HHHHHHHHHHHHHHh
Confidence 3468999999999999996 899999999999874
No 99
>cd07152 ALDH_BenzADH NAD-dependent benzaldehyde dehydrogenase II-like. NAD-dependent, benzaldehyde dehydrogenase II (XylC, BenzADH, EC=1.2.1.28) is involved in the oxidation of benzyl alcohol to benzoate. In Acinetobacter calcoaceticus, this process is carried out by the chromosomally encoded, benzyl alcohol dehydrogenase (xylB) and benzaldehyde dehydrogenase II (xylC) enzymes; whereas in Pseudomonas putida they are encoded by TOL plasmids.
Probab=95.76 E-value=0.015 Score=41.71 Aligned_cols=30 Identities=13% Similarity=0.119 Sum_probs=27.9
Q ss_pred CCeeEEecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 47 EDKIADVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 47 g~~l~~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
++++++++.++.+++++++++|++||+.|-
T Consensus 1 ~~~i~~~~~~~~~~v~~av~~A~~A~~~w~ 30 (443)
T cd07152 1 GAVLGEVGVADAADVDRAAARAAAAQRAWA 30 (443)
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999884
No 100
>cd07135 ALDH_F14-YMR110C Saccharomyces cerevisiae aldehyde dehydrogenase family 14 and related proteins. Aldehyde dehydrogenase family 14 (ALDH14), isolated mainly from the mitochondrial outer membrane of Saccharomyces cerevisiae (YMR110C) and most closely related to the plant and animal ALDHs and fatty ALDHs family 3 members, and similar fungal sequences, are present in this CD.
Probab=81.37 E-value=1.6 Score=31.55 Aligned_cols=21 Identities=5% Similarity=-0.265 Sum_probs=19.1
Q ss_pred CCHHHHHHHHHHHHHhhhhcc
Q psy1100 56 ADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 56 as~edv~~ai~aA~~Af~~~~ 76 (81)
.+.+|+++|+++|++||+.|-
T Consensus 2 ~~~~~v~~av~~A~~a~~~w~ 22 (436)
T cd07135 2 TPLDEIDSIHSRLRATFRSGK 22 (436)
T ss_pred CCHHHHHHHHHHHHHHHHhcC
Confidence 578999999999999999984
No 101
>PRK13805 bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional
Probab=79.84 E-value=1.8 Score=34.04 Aligned_cols=25 Identities=8% Similarity=-0.048 Sum_probs=21.9
Q ss_pred EecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 52 DVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 52 ~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.+...+.+||+++|++|++||+.|.
T Consensus 5 ~~~~~~~~~v~~av~~A~~A~~~w~ 29 (862)
T PRK13805 5 EMAVTNVAELDALVEKAKKAQEEFA 29 (862)
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3567899999999999999999884
No 102
>TIGR02518 EutH_ACDH acetaldehyde dehydrogenase (acetylating).
Probab=74.64 E-value=3.1 Score=30.68 Aligned_cols=22 Identities=9% Similarity=-0.224 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHhhhhcc
Q psy1100 55 EADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 55 ~as~edv~~ai~aA~~Af~~~~ 76 (81)
..+.+++++++++|++||+.|-
T Consensus 4 ~~~~~~v~~av~~A~~A~~~w~ 25 (488)
T TIGR02518 4 LYSIQQVRNLIRSAKVAQKKLA 25 (488)
T ss_pred ccCHHHHHHHHHHHHHHHHHHh
Confidence 4678999999999999999874
No 103
>cd07049 BMC_EutL_repeat1 ethanolamine utilization protein S (EutS), Bacterial Micro-Compartment (BMC) domain repeat 1. EutL proteins are homologs of the carboxysome shell protein. They are encoded within the eut operon and might be required for the formation of the outer shell of the bacterial eut polyhedral organelles which are involved in the cobalamin-dependent degradation of ethanolamine. Although it has been suggested that EutL might form hexamers and further assemble into the flat facets of the polyhedral outer shell of the eut organelles at present no experimental evidence directly supports this view. EutL proteins contain two tandem BMC domains. This CD includes domain 1 (the first BMC domain of EutL).
Probab=72.90 E-value=12 Score=22.32 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=27.7
Q ss_pred cCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhc
Q psy1100 43 NPATEDKIADVAEADKVNPAKTIVMLISCQHLE 75 (81)
Q Consensus 43 nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~ 75 (81)
.|.+|++++-+...+..+|+.+++.+..-++..
T Consensus 68 ~~~sG~vi~ii~G~dvsdV~sal~~~l~~l~~~ 100 (103)
T cd07049 68 TPLAGEVIGILAGPSPAEVRSGLNAAIDFIENE 100 (103)
T ss_pred cCCCccEEEEEeCCCHHHHHHHHHHHHHHHhcc
Confidence 467899998888889999999999998766543
No 104
>PTZ00381 aldehyde dehydrogenase family protein; Provisional
Probab=71.69 E-value=4.4 Score=29.94 Aligned_cols=22 Identities=5% Similarity=-0.201 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHHHHHhhhhcc
Q psy1100 55 EADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 55 ~as~edv~~ai~aA~~Af~~~~ 76 (81)
.++.+++++++++|+++|+.|-
T Consensus 3 ~~~~~~i~~av~~a~~a~~~~~ 24 (493)
T PTZ00381 3 PDNPEIIPPIVKKLKESFLTGK 24 (493)
T ss_pred CCCHHHHHHHHHHHHHHHHhcC
Confidence 5789999999999999999884
No 105
>PLN02203 aldehyde dehydrogenase
Probab=70.01 E-value=5 Score=29.63 Aligned_cols=22 Identities=14% Similarity=-0.040 Sum_probs=19.3
Q ss_pred CCCHHHHHHHHHHHHHhhhhcc
Q psy1100 55 EADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 55 ~as~edv~~ai~aA~~Af~~~~ 76 (81)
.+..+||++++++|++||+.|-
T Consensus 2 ~~~~~~v~~av~~a~~A~~~w~ 23 (484)
T PLN02203 2 EAPGETLEGSVAELRETYESGR 23 (484)
T ss_pred CCCHHHHHHHHHHHHHHHHhcC
Confidence 3567999999999999999984
No 106
>PLN02174 aldehyde dehydrogenase family 3 member H1
Probab=65.38 E-value=6.4 Score=29.15 Aligned_cols=22 Identities=9% Similarity=-0.077 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHHHHHHhhhhcc
Q psy1100 55 EADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 55 ~as~edv~~ai~aA~~Af~~~~ 76 (81)
.....||++++++|++||+.|-
T Consensus 6 ~~~~~~v~~av~~a~~af~~w~ 27 (484)
T PLN02174 6 MFGAADASILVTELRRSFDDGV 27 (484)
T ss_pred hcCHHHHHHHHHHHHHHHHhcC
Confidence 3567899999999999999874
No 107
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=64.90 E-value=6.2 Score=21.88 Aligned_cols=28 Identities=14% Similarity=0.186 Sum_probs=24.8
Q ss_pred CCCeeEEecCCCHHHHHHHHHHHHHhhh
Q psy1100 46 TEDKIADVAEADKVNPAKTIVMLISCQH 73 (81)
Q Consensus 46 tg~~l~~v~~as~edv~~ai~aA~~Af~ 73 (81)
.|++++++...++..++++++..+.|+.
T Consensus 46 ~Gd~l~~i~~~~~~~~~~a~~~~~~a~~ 73 (75)
T PF07831_consen 46 KGDPLATIYANDEARLEEAVERLRAAIT 73 (75)
T ss_dssp TTSEEEEEEESSSSHHHHHHHHHHHHEE
T ss_pred CCCeEEEEEcCChHHHHHHHHHHHhCcc
Confidence 5899999999999999999999988764
No 108
>PRK15398 aldehyde dehydrogenase EutE; Provisional
Probab=63.88 E-value=6.3 Score=28.94 Aligned_cols=22 Identities=5% Similarity=-0.171 Sum_probs=19.5
Q ss_pred CCCHHHHHHHHHHHHHhhhhcc
Q psy1100 55 EADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 55 ~as~edv~~ai~aA~~Af~~~~ 76 (81)
....+|+++++++|++||+.|-
T Consensus 32 ~~~~~dv~~av~~A~~A~~~w~ 53 (465)
T PRK15398 32 MGVFASVDDAVAAAKVAQQRYQ 53 (465)
T ss_pred ccHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999874
No 109
>COG3607 Predicted lactoylglutathione lyase [General function prediction only]
Probab=53.74 E-value=26 Score=21.77 Aligned_cols=27 Identities=0% Similarity=0.119 Sum_probs=23.3
Q ss_pred CCCCeeEEecCCCHHHHHHHHHHHHHh
Q psy1100 45 ATEDKIADVAEADKVNPAKTIVMLISC 71 (81)
Q Consensus 45 ~tg~~l~~v~~as~edv~~ai~aA~~A 71 (81)
...+++-.+..++.++|++.++.|.++
T Consensus 69 ~s~evli~ls~~s~eevd~~v~ka~ea 95 (133)
T COG3607 69 KSREVLISLSAGSREEVDELVDKALEA 95 (133)
T ss_pred CCceEEEEeccCcHHHHHHHHHHHHHc
Confidence 346778899999999999999999865
No 110
>PF13132 DUF3950: Domain of unknown function (DUF3950)
Probab=51.27 E-value=9.1 Score=17.71 Aligned_cols=19 Identities=11% Similarity=-0.356 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHH-hhhhccc
Q psy1100 59 VNPAKTIVMLIS-CQHLEVF 77 (81)
Q Consensus 59 edv~~ai~aA~~-Af~~~~~ 77 (81)
++|+.+++.+.. -|.+|+-
T Consensus 3 eQI~~a~~~~~~~NFSaWV~ 22 (30)
T PF13132_consen 3 EQIEIALEQEGSGNFSAWVK 22 (30)
T ss_pred HHHHHHHHhccCcChHHHHH
Confidence 678888877754 3777763
No 111
>smart00876 BATS Biotin and Thiamin Synthesis associated domain. Biotin synthase (BioB), , catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer PUBMED:12482614. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimerPUBMED:12650933. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers PUBMED:12482614, PUBMED:12650933. This domain therefore may be involved in co-factor binding or dimerisation.
Probab=41.56 E-value=43 Score=19.00 Aligned_cols=35 Identities=11% Similarity=0.036 Sum_probs=27.1
Q ss_pred eeecCCCCCeeEEe-cCCCHHHHHHHHHHHHHhhhh
Q psy1100 40 PTINPATEDKIADV-AEADKVNPAKTIVMLISCQHL 74 (81)
Q Consensus 40 ~v~nP~tg~~l~~v-~~as~edv~~ai~aA~~Af~~ 74 (81)
...+|..|.++... +..+.+++-+.|..++-.++.
T Consensus 3 n~l~P~~gTp~~~~~~~~~~~~~l~~ia~~Rl~~P~ 38 (94)
T smart00876 3 NRLRPIEGTPLEDPPPPVSPEEFLRTIAAARLALPD 38 (94)
T ss_pred CccccCCCCCcccCCCCCCHHHHHHHHHHHHHHCCC
Confidence 34567778777665 778999999999998877663
No 112
>COG0095 LplA Lipoate-protein ligase A [Coenzyme metabolism]
Probab=40.56 E-value=29 Score=23.29 Aligned_cols=28 Identities=7% Similarity=-0.199 Sum_probs=21.7
Q ss_pred ecCCCHHHHHHHHHHHHHhhhhcccccc
Q psy1100 53 VAEADKVNPAKTIVMLISCQHLEVFNLR 80 (81)
Q Consensus 53 v~~as~edv~~ai~aA~~Af~~~~~~~~ 80 (81)
....+.++...+.+.+.+-+..|+||..
T Consensus 220 ~~~lt~~e~~~~~~~~~~~~~~~~w~~~ 247 (248)
T COG0095 220 EYELTPEELELAEKLAEEKYSSWEWNFG 247 (248)
T ss_pred ccCCCHHHHHHHHHHHHHHhcchhhhcc
Confidence 3345668888888888888999999874
No 113
>PF08793 2C_adapt: 2-cysteine adaptor domain; InterPro: IPR014901 The virus-specific 2-cysteine adaptor is found fused to OTU/A20-like peptidases and S/T protein kinases. The associations to these proteins indicate that they might function as viral adaptors connecting the kinases and OTU/A20 peptidases to specific targets [].
Probab=37.93 E-value=15 Score=17.72 Aligned_cols=12 Identities=50% Similarity=0.659 Sum_probs=9.4
Q ss_pred eecCCCCCeeEE
Q psy1100 41 TINPATEDKIAD 52 (81)
Q Consensus 41 v~nP~tg~~l~~ 52 (81)
.+||.||+.|..
T Consensus 11 ~~NP~Tgr~Ik~ 22 (37)
T PF08793_consen 11 TVNPITGRKIKP 22 (37)
T ss_pred CCCCCCCCcCCC
Confidence 479999998843
No 114
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=37.02 E-value=50 Score=18.95 Aligned_cols=18 Identities=17% Similarity=0.065 Sum_probs=15.8
Q ss_pred ecCCCHHHHHHHHHHHHH
Q psy1100 53 VAEADKVNPAKTIVMLIS 70 (81)
Q Consensus 53 v~~as~edv~~ai~aA~~ 70 (81)
+...|.+|++.|+.+|++
T Consensus 52 iti~sq~DLd~Ai~~a~~ 69 (86)
T cd06408 52 ITMGDQDDLDMAIDTARS 69 (86)
T ss_pred ccccCHHHHHHHHHHHHH
Confidence 467899999999999986
No 115
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=36.25 E-value=60 Score=22.37 Aligned_cols=36 Identities=8% Similarity=0.027 Sum_probs=31.3
Q ss_pred eeeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhh
Q psy1100 39 FPTINPATEDKIADVAEADKVNPAKTIVMLISCQHL 74 (81)
Q Consensus 39 ~~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~ 74 (81)
+.+.=|.-|...+..+..+.+++-+++..|++.|+.
T Consensus 185 l~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~ 220 (275)
T COG1856 185 LVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN 220 (275)
T ss_pred EEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC
Confidence 456668888888889999999999999999999876
No 116
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=34.13 E-value=47 Score=18.38 Aligned_cols=25 Identities=8% Similarity=-0.015 Sum_probs=14.9
Q ss_pred eeEEecCCCHHHHHHHHHHHHHhhh
Q psy1100 49 KIADVAEADKVNPAKTIVMLISCQH 73 (81)
Q Consensus 49 ~l~~v~~as~edv~~ai~aA~~Af~ 73 (81)
.+++-+..-.+.++.||.+|.....
T Consensus 11 lvGtSp~S~d~Ai~~Ai~RA~~t~~ 35 (71)
T COG3360 11 LVGTSPTSIDAAIANAIARAADTLD 35 (71)
T ss_pred EEecCCccHHHHHHHHHHHHHhhhh
Confidence 3455555556666777777765544
No 117
>PF07120 DUF1376: Protein of unknown function (DUF1376); InterPro: IPR010781 This entry is represented by Bacteriophage PBC5 (Sinorhizobium phage PBC5), Orf49. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical bacterial proteins of around 95 residues in length. The function of this family is unknown.
Probab=33.63 E-value=13 Score=21.04 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=28.2
Q ss_pred CCCCCeeEEecCCCHHHHHHHHHHHHHhh----hhcccccc
Q psy1100 44 PATEDKIADVAEADKVNPAKTIVMLISCQ----HLEVFNLR 80 (81)
Q Consensus 44 P~tg~~l~~v~~as~edv~~ai~aA~~Af----~~~~~~~~ 80 (81)
|.+.+.++++..++.++-.++++..-+.| ...+||.|
T Consensus 40 p~d~~~Lar~~~~s~~~~~~a~~~ll~~f~~~~dg~~~~~r 80 (88)
T PF07120_consen 40 PDDDKRLARICGCSTKEWRKALDFLLREFFRLEDGRWWNKR 80 (88)
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHhCCCCCCCCEehHH
Confidence 45667789999999998889988877766 45566654
No 118
>PRK15405 ethanolamine utilization protein EutL; Provisional
Probab=32.65 E-value=1.2e+02 Score=20.48 Aligned_cols=33 Identities=9% Similarity=0.112 Sum_probs=27.0
Q ss_pred cCCCCCeeEEecCCCHHHHHHHHHHHHHhhhhc
Q psy1100 43 NPATEDKIADVAEADKVNPAKTIVMLISCQHLE 75 (81)
Q Consensus 43 nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~~ 75 (81)
.|..|+.+.-+...+..+|+++++.+.+-...+
T Consensus 77 ~~~~G~viiIi~G~dvsdVrsAveaa~~~i~~~ 109 (217)
T PRK15405 77 TPLAGEVIGILAGPNPAEVRAGLDAMVAFIENG 109 (217)
T ss_pred CCCCccEEEEEeCCCHHHHHHHHHHHHHHHHhh
Confidence 456788888888779999999999998776554
No 119
>PF06968 BATS: Biotin and Thiamin Synthesis associated domain; InterPro: IPR010722 Biotin synthase (BioB), 2.8.1.6 from EC, catalyses the last step of the biotin biosynthetic pathway. The reaction consists in the introduction of a sulphur atom into dethiobiotin. BioB functions as a homodimer []. Thiamin synthesis if a complex process involving at least six gene products (ThiFSGH, ThiI and ThiJ). Two of the proteins required for the biosynthesis of the thiazole moiety of thiamine (vitamin B(1)) are ThiG and ThiH (this entry) and form a heterodimer[]. Both of these reactions are thought of involve the binding of co-factors, and both function as dimers [, ]. This domain therefore may be involved in co-factor binding or dimerisation.; GO: 0051536 iron-sulfur cluster binding, 0051186 cofactor metabolic process; PDB: 1R30_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A.
Probab=30.05 E-value=50 Score=18.71 Aligned_cols=35 Identities=9% Similarity=0.010 Sum_probs=21.3
Q ss_pred eeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhhh
Q psy1100 40 PTINPATEDKIADVAEADKVNPAKTIVMLISCQHL 74 (81)
Q Consensus 40 ~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~~ 74 (81)
...+|..|.++......+.+++-+.|...+-.++.
T Consensus 3 n~l~P~~Gtpl~~~~~l~~~e~lr~ia~~Rl~~P~ 37 (93)
T PF06968_consen 3 NFLRPIPGTPLEDPPPLSDEEFLRIIAAFRLLLPE 37 (93)
T ss_dssp EE----TTSTTTTS----HHHHHHHHHHHHHHSTT
T ss_pred eeEEeCCCCCCCCCCCCCHHHHHHHHHHHHHHCCC
Confidence 34678888888778888999999999988866553
No 120
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=28.48 E-value=52 Score=25.71 Aligned_cols=18 Identities=11% Similarity=-0.051 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHhhhhcc
Q psy1100 59 VNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 59 edv~~ai~aA~~Af~~~~ 76 (81)
+.+++++++|++||+.|-
T Consensus 294 ~~~~~~~~aA~~A~~~W~ 311 (718)
T PLN02418 294 VGAREMAVAARESSRKLQ 311 (718)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 359999999999999874
No 121
>PRK01037 trmD tRNA (guanine-N(1)-)-methyltransferase/unknown domain fusion protein; Reviewed
Probab=28.38 E-value=1e+02 Score=22.36 Aligned_cols=27 Identities=0% Similarity=-0.191 Sum_probs=23.2
Q ss_pred CCCCeeEEecCCCHHHHHHHHHHHHHh
Q psy1100 45 ATEDKIADVAEADKVNPAKTIVMLISC 71 (81)
Q Consensus 45 ~tg~~l~~v~~as~edv~~ai~aA~~A 71 (81)
.+.+.+-.+...|.++|++.+++|.+|
T Consensus 298 ~~~evLl~Ls~~Sre~VD~lv~~A~aa 324 (357)
T PRK01037 298 NRGTTTLSLELECEHDFVRFLRRWEML 324 (357)
T ss_pred CcceEEEEeccCCHHHHHHHHHHHHHc
Confidence 346778899999999999999999875
No 122
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=26.94 E-value=1.1e+02 Score=19.28 Aligned_cols=33 Identities=3% Similarity=-0.179 Sum_probs=24.5
Q ss_pred eeecCCCCCeeEEecCCCHHHHHHHHHHHHHhhh
Q psy1100 40 PTINPATEDKIADVAEADKVNPAKTIVMLISCQH 73 (81)
Q Consensus 40 ~v~nP~tg~~l~~v~~as~edv~~ai~aA~~Af~ 73 (81)
-+.|+ +|+.+..-...+.+++++.+++.+.++.
T Consensus 151 ~lID~-~G~I~~~g~~~~~~~le~ll~~l~~~~~ 183 (189)
T TIGR02661 151 VLLDQ-DGKIRAKGLTNTREHLESLLEADREGFA 183 (189)
T ss_pred EEECC-CCeEEEccCCCCHHHHHHHHHHHHcCcc
Confidence 45576 4877776555688999999998887764
No 123
>PF03725 RNase_PH_C: 3' exoribonuclease family, domain 2 This Prosite family only includes Ribonuclease PH; InterPro: IPR015847 The PH (phosphorolytic) domain is responsible for 3'-5' exoribonuclease activity, although in some proteins this domain has lost its catalytic function. An active PH domain uses inorganic phosphate as a nucleophile, adding it across the phosphodiester bond between the end two nucleotides in order to release ribonucleoside 5'-diphosphate (rNDP) from the 3' end of the RNA substrate. PH domains can be found in bacterial/organelle RNases and PNPases (polynucleotide phosphorylases) [], as well as in archaeal and eukaryotic RNA exosomes [, ], the later acting as nano-compartments for the degradation or processing of RNA (including mRNA, rRNA, snRNA and snoRNA). Bacterial/organelle PNPases share a common barrel structure with RNA exosomes, consisting of a hexameric ring of PH domains that act as a degradation chamber, and an S1-domain/KH-domain containing cap that binds the RNA substrate (and sometimes accessory proteins) in order to regulate and restrict entry into the degradation chamber []. Unstructured RNA substrates feed in through the pore made by the S1 domains, are degraded by the PH domain ring, and exit as nucleotides via the PH pore at the opposite end of the barrel [, ]. This entry represents the phosphorolytic (PH) domain 2, which has a core 3-layer alpha/beta/alpha structure. This domain is found in bacterial/organelle PNPases and in archaeal/eukaryotic exosomes []. More information about these proteins can be found at Protein of the Month: RNA Exosomes [].; GO: 0003723 RNA binding, 0006396 RNA processing; PDB: 1E3H_A 1E3P_A 2NN6_E 2WNR_A 3U1K_B 2BA0_H 2BA1_H 3M85_G 3M7N_H 3H1C_K ....
Probab=26.67 E-value=66 Score=16.69 Aligned_cols=16 Identities=6% Similarity=0.003 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHh
Q psy1100 56 ADKVNPAKTIVMLISC 71 (81)
Q Consensus 56 as~edv~~ai~aA~~A 71 (81)
.+.+++.++++.|++|
T Consensus 53 ~~~~~l~~~i~~A~~~ 68 (68)
T PF03725_consen 53 LSEDQLEEAIELAKKA 68 (68)
T ss_dssp EEHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcC
Confidence 7899999999999875
No 124
>PF07855 DUF1649: Protein of unknown function (DUF1649); InterPro: IPR012445 This family represents Autophagy-related protein 101.
Probab=25.01 E-value=1.1e+02 Score=19.33 Aligned_cols=35 Identities=11% Similarity=0.063 Sum_probs=26.1
Q ss_pred ecCC--CCCeeE-EecCCCHHHHHHHHHHHHHhhhhcc
Q psy1100 42 INPA--TEDKIA-DVAEADKVNPAKTIVMLISCQHLEV 76 (81)
Q Consensus 42 ~nP~--tg~~l~-~v~~as~edv~~ai~aA~~Af~~~~ 76 (81)
.-|. |-+.+. +|+.++..++++.|+.-..+|..|.
T Consensus 30 v~p~dv~~e~ldiTy~~~~~~el~~~Id~ki~~f~~~l 67 (163)
T PF07855_consen 30 VRPKDVTCEFLDITYPRCNDPELESLIDEKINQFIRQL 67 (163)
T ss_pred ccccccccceecceeeccCcHHHHHHHHHHHHHHHHHH
Confidence 3455 555554 7888999999999998888877664
No 125
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=24.39 E-value=1.1e+02 Score=17.57 Aligned_cols=20 Identities=15% Similarity=0.219 Sum_probs=15.1
Q ss_pred CeeeeecCCCCCeeEEecCC
Q psy1100 37 RTFPTINPATEDKIADVAEA 56 (81)
Q Consensus 37 ~~~~v~nP~tg~~l~~v~~a 56 (81)
..+.|+|..||++|-.+|.-
T Consensus 68 ~vVkViD~~T~eVIRqIP~E 87 (107)
T PF03646_consen 68 VVVKVIDKETGEVIRQIPPE 87 (107)
T ss_dssp EEEEEEETTT-SEEEEE-HH
T ss_pred EEEEEEECCCCcEEEeCCcH
Confidence 35789999999999999853
No 126
>PRK13489 chemoreceptor glutamine deamidase CheD; Provisional
Probab=20.26 E-value=1.3e+02 Score=20.44 Aligned_cols=59 Identities=12% Similarity=0.155 Sum_probs=28.4
Q ss_pred hhhcccccCCccccccceeecceEeeCCCCCeeeeecCCCCCeeEEecC---CCHHHHHHHHH
Q psy1100 7 IEERGSAALAPSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAE---ADKVNPAKTIV 66 (81)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~i~G~~~~~~~~~~~~v~nP~tg~~l~~v~~---as~edv~~ai~ 66 (81)
|-++-+.+-...+......|-.+.+.+..+..+ ..+|.||+++..... .+.++.+.++.
T Consensus 122 IG~RNieaa~~~L~~~gI~IvaeDvGG~~gRkV-~f~~~TG~v~Vk~~~~~~~~~~~~~~~~~ 183 (233)
T PRK13489 122 IGDRNADFVRRYLALERIRITAEDLQGVHPRKV-AFMPRTGRAMVKKLRLQVPGVAEREAALA 183 (233)
T ss_pred hhHHHHHHHHHHHHHcCCcEEEEeCCCCCCcEE-EEECCCCEEEEEEcCCCCCchhHHHHHHH
Confidence 333333333333333333344444444334434 568999998865433 23444444443
No 127
>PF14246 TetR_C_7: AefR-like transcriptional repressor, C-terminal region; PDB: 3BHQ_B 3CDL_A.
Probab=20.16 E-value=1.3e+02 Score=14.69 Aligned_cols=19 Identities=0% Similarity=-0.043 Sum_probs=12.8
Q ss_pred cCCCHHHHHHHHHHHHHhh
Q psy1100 54 AEADKVNPAKTIVMLISCQ 72 (81)
Q Consensus 54 ~~as~edv~~ai~aA~~Af 72 (81)
+..+.+++++.++.|...|
T Consensus 33 ~~~s~~e~~~~v~~aV~~F 51 (55)
T PF14246_consen 33 PPPSAEEIERIVESAVDMF 51 (55)
T ss_dssp ----HHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHH
Confidence 4457889999999888766
Done!