RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1100
(81 letters)
>gnl|CDD|143459 cd07141, ALDH_F1AB_F2_RALDH1, NAD+-dependent retinal
dehydrogenase 1, ALDH families 1A, 1B, and 2-like.
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36) also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1) in humans, is a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
Length = 481
Score = 72.8 bits (179), Expect = 7e-17
Identities = 23/36 (63%), Positives = 30/36 (83%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
++FINN + D+VSG+TFPTINPAT +KI +V E DK
Sbjct: 8 KIFINNEWHDSVSGKTFPTINPATGEKICEVQEGDK 43
>gnl|CDD|143410 cd07091, ALDH_F1-2_Ald2-like, ALDH subfamily: ALDH families 1and
2, including 10-formyltetrahydrofolate dehydrogenase,
NAD+-dependent retinal dehydrogenase 1 and related
proteins. ALDH subfamily which includes the
NAD+-dependent retinal dehydrogenase 1 (RALDH 1, ALDH1,
EC=1.2.1.36), also known as aldehyde dehydrogenase
family 1 member A1 (ALDH1A1), in humans, a
homotetrameric, cytosolic enzyme that catalyzes the
oxidation of retinaldehyde to retinoic acid. Human
ALDH1B1 and ALDH2 are also in this cluster; both are
mitochrondrial homotetramers which play important roles
in acetaldehyde oxidation; ALDH1B1 in response to UV
light exposure and ALDH2 during ethanol metabolism.
10-formyltetrahydrofolate dehydrogenase (FTHFDH,
EC=1.5.1.6), also known as aldehyde dehydrogenase
family 1 member L1 (ALDH1L1), in humans, a multi-domain
homotetramer with an N-terminal formyl transferase
domain and a C-terminal ALDH domain. FTHFDH catalyzes
an NADP+-dependent dehydrogenase reaction resulting in
the conversion of 10-formyltetrahydrofolate to
tetrahydrofolate and CO2. Also included in this
subfamily is the Arabidosis aldehyde dehydrogenase
family 2 members B4 and B7 (EC=1.2.1.3), which are
mitochondrial, homotetramers that oxidize acetaldehyde
and glycolaldehyde, as well as, the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde. Also included is the AldA aldehyde
dehydrogenase of Aspergillus nidulans (locus AN0554),
the aldehyde dehydrogenase 2 (YMR170c, ALD5,
EC=1.2.1.5) of Saccharomyces cerevisiae, and other
similar sequences.
Length = 476
Score = 69.2 bits (170), Expect = 1e-15
Identities = 27/36 (75%), Positives = 31/36 (86%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
LFINN FVD+VSG+TFPTINPATE+ I VAEAD+
Sbjct: 5 GLFINNEFVDSVSGKTFPTINPATEEVICQVAEADE 40
>gnl|CDD|143460 cd07142, ALDH_F2BC, Arabidosis aldehyde dehydrogenase family 2
B4, B7, C4-like. Included in this CD is the Arabidosis
aldehyde dehydrogenase family 2 members B4 and B7
(EC=1.2.1.3), which are mitochondrial homotetramers
that oxidize acetaldehyde and glycolaldehyde, but not
L-lactaldehyde. Also in this group, is the Arabidosis
cytosolic, homotetramer ALDH2C4 (EC=1.2.1.3), an enzyme
involved in the oxidation of sinapalehyde and
coniferaldehyde.
Length = 476
Score = 60.2 bits (146), Expect = 2e-12
Identities = 22/36 (61%), Positives = 26/36 (72%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+LFIN FVDA SG+TFPTI+P + IA VAE D
Sbjct: 5 KLFINGQFVDAASGKTFPTIDPRNGEVIAHVAEGDA 40
>gnl|CDD|215410 PLN02766, PLN02766, coniferyl-aldehyde dehydrogenase.
Length = 501
Score = 57.1 bits (138), Expect = 3e-11
Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
Query: 9 ERGSAAL--APSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
G A+ P +LFIN FVDA SG+TF T +P T + IA +AE DK
Sbjct: 6 NCGGASGVKVPEIKFTKLFINGEFVDAASGKTFETRDPRTGEVIARIAEGDK 57
>gnl|CDD|215259 PLN02466, PLN02466, aldehyde dehydrogenase family 2 member.
Length = 538
Score = 56.0 bits (135), Expect = 6e-11
Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEAD 57
QL IN FVDA SG+TFPT++P T + IA VAE D
Sbjct: 59 QLLINGQFVDAASGKTFPTLDPRTGEVIAHVAEGD 93
>gnl|CDD|143458 cd07140, ALDH_F1L_FTFDH, 10-formyltetrahydrofolate dehydrogenase,
ALDH family 1L. 10-formyltetrahydrofolate
dehydrogenase (FTHFDH, EC=1.5.1.6), also known as
aldehyde dehydrogenase family 1 member L1 (ALDH1L1) in
humans, is a multi-domain homotetramer with an
N-terminal formyl transferase domain and a C-terminal
ALDH domain. FTHFDH catalyzes an NADP+-dependent
dehydrogenase reaction resulting in the conversion of
10-formyltetrahydrofolate to tetrahydrofolate and CO2.
The ALDH domain is also capable of the oxidation of
short chain aldehydes to their corresponding acids.
Length = 486
Score = 49.8 bits (119), Expect = 1e-08
Identities = 18/34 (52%), Positives = 21/34 (61%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEA 56
QLFIN FVDA G+T+ TINP I V+ A
Sbjct: 7 QLFINGEFVDAEGGKTYNTINPTDGSVICKVSLA 40
>gnl|CDD|183918 PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional.
Length = 488
Score = 49.5 bits (119), Expect = 1e-08
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 17 PSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEAD 57
+ L+I+ A+V+A SG TF INPAT + +A V A
Sbjct: 2 SRQPLQSLYIDGAYVEATSGETFEVINPATGEVLATVQAAT 42
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar
sequences, are present in this CD.
Length = 484
Score = 48.6 bits (116), Expect = 2e-08
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 24 LFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
LFINN FV + G T T+NP+T + IA V A +
Sbjct: 10 LFINNEFVKSSDGETIKTVNPSTGEVIASVYAAGE 44
>gnl|CDD|143429 cd07111, ALDH_F16, Aldehyde dehydrogenase family 16A1-like.
Uncharacterized aldehyde dehydrogenase family 16 member
A1 (ALDH16A1) and other related sequences are present
in this CD. The active site cysteine and glutamate
residues are not conserved in the human ALDH16A1
protein sequence.
Length = 480
Score = 45.8 bits (109), Expect = 2e-07
Identities = 21/51 (41%), Positives = 31/51 (60%), Gaps = 5/51 (9%)
Query: 12 SAALAPSFLV-----FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEAD 57
SAA A ++L F FIN +V + ++FPTINPAT + +A V +A+
Sbjct: 7 SAACALAWLDAHDRSFGHFINGKWVKPENRKSFPTINPATGEVLASVLQAE 57
>gnl|CDD|215260 PLN02467, PLN02467, betaine aldehyde dehydrogenase.
Length = 503
Score = 45.9 bits (109), Expect = 2e-07
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEAD 57
QLFI + + V G+ P +NPATE+ I D+ A
Sbjct: 9 QLFIGGEWREPVLGKRIPVVNPATEETIGDIPAAT 43
>gnl|CDD|143461 cd07143, ALDH_AldA_AN0554, Aspergillus nidulans aldehyde
dehydrogenase, AldA (AN0554)-like. NAD(P)+-dependent
aldehyde dehydrogenase (AldA) of Aspergillus nidulans
(locus AN0554), and other similar sequences, are
present in this CD.
Length = 481
Score = 44.4 bits (105), Expect = 7e-07
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 24 LFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
LFIN FVD+V G T NP+T I +AEA +
Sbjct: 9 LFINGEFVDSVHGGTVKVYNPSTGKLITKIAEATE 43
>gnl|CDD|143437 cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine
aldehyde dehydrogenase-like. Included in this CD is
the NAD+-dependent, betaine aldehyde dehydrogenase
(BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved
in the synthesis of the osmoprotectant glycine betaine
from choline or glycine betaine aldehyde.
Length = 482
Score = 41.5 bits (98), Expect = 8e-06
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 25 FINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+I+ +V+A SG+T INPA + IA V E
Sbjct: 1 YIDGEWVEAASGKTRDIINPANGEVIATVPEGTA 34
>gnl|CDD|143407 cd07088, ALDH_LactADH-AldA, Escherichia coli lactaldehyde
dehydrogenase AldA-like. Lactaldehyde dehydrogenase
from Escherichia coli (AldA, LactADH, EC=1.2.1.22), an
NAD(+)-dependent enzyme involved in the metabolism of
L-fucose and L-rhamnose, and other similar sequences
are present in this CD.
Length = 468
Score = 41.1 bits (97), Expect = 1e-05
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 25 FINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+IN FV + SG T +NPAT + +A V A
Sbjct: 1 YINGEFVPSSSGETIDVLNPATGEVVATVPAATA 34
>gnl|CDD|182108 PRK09847, PRK09847, gamma-glutamyl-gamma-aminobutyraldehyde
dehydrogenase; Provisional.
Length = 494
Score = 41.0 bits (96), Expect = 1e-05
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADKVN 60
+LFIN + A TF T++P T+ +A +A V+
Sbjct: 21 RLFINGEYTAAAENETFETVDPVTQAPLAKIARGKSVD 58
>gnl|CDD|143456 cd07138, ALDH_CddD_SSP0762, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like. The 6-oxolauric acid dehydrogenase
(CddD) from Rhodococcus ruber SC1 which converts
6-oxolauric acid to dodecanedioic acid, and the
aldehyde dehydrogenase (locus SSP0762) from
Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305 and other similar sequences, are included in this
CD.
Length = 466
Score = 40.9 bits (97), Expect = 1e-05
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 24 LFINNAFVDAVSGRTFPTINPATEDKIADVAEAD 57
+I+ A+V T INPATE+ I V
Sbjct: 1 FYIDGAWVAPAGTETIDVINPATEEVIGTVPLGT 34
>gnl|CDD|200131 TIGR01804, BADH, glycine betaine aldehyde dehydrogenase. Under
osmotic stress, betaine aldehyde dehydrogenase oxidizes
glycine betaine aldehyde into the osmoprotectant
glycine betaine, via the second of two oxidation steps
from exogenously supplied choline or betaine aldehyde.
This choline-glycine betaine synthesis pathway can be
found in gram-positive and gram-negative bacteria. In
Escherichia coli, betaine aldehyde dehydrogenase (betB)
is osmotically co-induced with choline dehydrogenase
(betA) in the presence of choline. These dehydrogenases
are located in a betaine gene cluster with the upstream
choline transporter (betT) and transcriptional
regulator (betI). Similar to E.coli, betaine synthesis
in Staphylococcus xylosus is also influenced by osmotic
stress and the presence of choline with genes localized
in a functionally equivalent gene cluster. Organization
of the betaine gene cluster in Sinorhizobium meliloti
and Bacillus subtilis differs from that of E.coli by
the absence of upstream choline transporter and
transcriptional regulator homologues. Additionally,
B.subtilis co-expresses a type II alcohol dehydrogenase
with betaine aldehyde dehydrogenase instead of choline
dehydrogenase as in E.coli, St.xylosus, and
Si.meliloti. Betaine aldehyde dehydrogenase is a member
of the aldehyde dehydrogenase family (pfam00171)
[Cellular processes, Adaptations to atypical
conditions].
Length = 467
Score = 40.2 bits (94), Expect = 2e-05
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 25 FINNAFVDAVSGRTFPTINPATEDKIADVAEA 56
FI+ +V+ +G T INPA + IA V A
Sbjct: 1 FIDGEYVEDSAGTTREIINPANGEVIATVHAA 32
>gnl|CDD|131352 TIGR02299, HpaE, 5-carboxymethyl-2-hydroxymuconate semialdehyde
dehydrogenase. This model represents the dehydrogenase
responsible for the conversion of
5-carboxymethyl-2-hydroxymuconate semialdehyde to
5-carboxymethyl-2-hydroxymuconate (a tricarboxylic
acid). This is the step in the degradation of
4-hydroxyphenylacetic acid via homoprotocatechuate
following the oxidative opening of the aromatic ring.
Length = 488
Score = 39.8 bits (93), Expect = 3e-05
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 24 LFINNAFVDAVSGRTFPTINPATEDKIADVA 54
FI+ FV + SG TF T++PAT + + VA
Sbjct: 3 HFIDGEFVPSESGETFETLSPATNEVLGSVA 33
>gnl|CDD|132260 TIGR03216, OH_muco_semi_DH, 2-hydroxymuconic semialdehyde
dehydrogenase. Members of this protein family are
2-hydroxymuconic semialdehyde dehydrogenase. Many
aromatic compounds are catabolized by way of the
catechol, via the meta-cleavage pathway, to pyruvate
and acetyl-CoA. This enzyme performs the second of
seven steps in that pathway for catechol degradation
[Energy metabolism, Other].
Length = 481
Score = 39.3 bits (92), Expect = 5e-05
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ FIN AFV+ SG+TF INP IA V EA
Sbjct: 1 IRNFINGAFVE--SGKTFANINPVDGRVIARVHEAGA 35
>gnl|CDD|143471 cd07559, ALDH_ACDHII_AcoD-like, Ralstonia eutrophus
NAD+-dependent acetaldehyde dehydrogenase II and
Staphylococcus aureus AldA1 (SACOL0154)-like. Included
in this CD is the NAD+-dependent, acetaldehyde
dehydrogenase II (AcDHII, AcoD, EC=1.2.1.3) from
Ralstonia (Alcaligenes) eutrophus H16 involved in the
catabolism of acetoin and ethanol, and similar
proteins, such as, the dimeric dihydrolipoamide
dehydrogenase of the acetoin dehydrogenase enzyme
system of Klebsiella pneumonia. Also included are
sequences similar to the NAD+-dependent
chloroacetaldehyde dehydrogenases (AldA and AldB) of
Xanthobacter autotrophicus GJ10 which are involved in
the degradation of 1,2-dichloroethane, as well as, the
uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and
other similar sequences.
Length = 480
Score = 39.2 bits (92), Expect = 5e-05
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ FIN +V G F NP + ++ +
Sbjct: 1 YDNFINGEWVAPSKGEYFDNYNPVNGKVLCEIPRSTA 37
>gnl|CDD|237391 PRK13473, PRK13473, gamma-aminobutyraldehyde dehydrogenase;
Provisional.
Length = 475
Score = 38.4 bits (90), Expect = 8e-05
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEAD 57
+L IN V G P NPAT + +A++AEA
Sbjct: 4 KLLINGELVAG-EGEKQPVYNPATGEVLAEIAEAS 37
>gnl|CDD|215157 PLN02278, PLN02278, succinic semialdehyde dehydrogenase.
Length = 498
Score = 37.7 bits (88), Expect = 2e-04
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 20 LVFQLFINNAFVDAVSGRTFPTINPATEDKIADVA 54
L Q I + DA G+TFP NPAT + IA+V
Sbjct: 23 LRTQGLIGGKWTDAYDGKTFPVYNPATGEVIANVP 57
>gnl|CDD|143435 cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus
AldA1 (SACOL0154) aldehyde dehydrogenase-like.
Uncharacterized aldehyde dehydrogenase from
Staphylococcus aureus (AldA1, locus SACOL0154) and
other similar sequences are present in this CD.
Length = 475
Score = 37.4 bits (87), Expect = 2e-04
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEA 56
+ LFIN +V SG T + NPA + ++++ +A
Sbjct: 1 YGLFINGEWVKGSSGETIDSYNPANGETLSEITDA 35
>gnl|CDD|143404 cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase
and ALDH family members 6A1 and 6B2. Methylmalonate
semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27)
[acylating] from Bacillus subtilis is involved in
valine metabolism and catalyses the NAD+- and
CoA-dependent oxidation of methylmalonate semialdehyde
into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1
and Arabidopsis MMSDH ALDH6B2 are also present in this
CD.
Length = 478
Score = 36.3 bits (85), Expect = 5e-04
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+LFIN +V++ + NPAT + IA V A
Sbjct: 2 KLFINGEWVESKTTEWLDVYNPATGEVIARVPLATA 37
>gnl|CDD|223944 COG1012, PutA, NAD-dependent aldehyde dehydrogenases [Energy
production and conversion].
Length = 472
Score = 36.5 bits (85), Expect = 5e-04
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
++L I+ +VD S T INPAT + IA V A
Sbjct: 1 YKLLIDGEWVDGAS--TIEVINPATGEVIATVPAATA 35
>gnl|CDD|143457 cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde
dehydrogenase AldA-like. The Mycobacterium
tuberculosis NAD+-dependent, aldehyde dehydrogenase
PDB structure, 3B4W, and the Mycobacterium
tuberculosis H37Rv aldehyde dehydrogenase AldA (locus
Rv0768) sequence, as well as the Rhodococcus
rhodochrous ALDH involved in haloalkane catabolism, and
other similar sequences, are included in this CD.
Length = 471
Score = 36.0 bits (84), Expect = 5e-04
Identities = 12/34 (35%), Positives = 17/34 (50%)
Query: 24 LFINNAFVDAVSGRTFPTINPATEDKIADVAEAD 57
LFI +V T ++PATE+ + V EA
Sbjct: 1 LFIGGRWVAPSGSETIDVVSPATEEVVGRVPEAT 34
>gnl|CDD|143430 cd07112, ALDH_GABALDH-PuuC, Escherichia coli NADP+-dependent
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
PuuC-like. NADP+-dependent,
gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase
(GABALDH) PuuC of Escherichia coli which catalyzes the
conversion of putrescine to 4-aminobutanoate and other
similar sequences are present in this CD.
Length = 462
Score = 36.0 bits (84), Expect = 7e-04
Identities = 13/22 (59%), Positives = 15/22 (68%)
Query: 36 GRTFPTINPATEDKIADVAEAD 57
G TF TINPAT +A+VA D
Sbjct: 1 GETFATINPATGRVLAEVAACD 22
>gnl|CDD|212007 TIGR04284, aldehy_Rv0768, aldehyde dehydrogenase, Rv0768 family.
This family describes a branch of the aldehyde
dehydrogenase (NAD) family (see pfam00171) that
includes Rv0768 from Mycobacterium tuberculosis. All
members of this family belong to species predicted to
synthesize mycofactocin, suggesting that this enzyme or
another upstream or downstream in the same pathway
might be mycofactocin-dependent. However, the taxonomic
range of this family is not nearly broad enough to make
that relationship conclusive [Unknown function, Enzymes
of unknown specificity].
Length = 480
Score = 35.5 bits (82), Expect = 0.001
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEAD 57
+L I+ V +G TFPT+NPATE+ + A+A
Sbjct: 2 RLLIDGKLVAGSAG-TFPTVNPATEEVLGVAADAT 35
>gnl|CDD|215767 pfam00171, Aldedh, Aldehyde dehydrogenase family. This family of
dehydrogenases act on aldehyde substrates. Members use
NADP as a cofactor. The family includes the following
members: The prototypical members are the aldehyde
dehydrogenases EC:1.2.1.3. Succinate-semialdehyde
dehydrogenase EC:1.2.1.16. Lactaldehyde dehydrogenase
EC:1.2.1.22. Benzaldehyde dehydrogenase EC:1.2.1.28.
Methylmalonate-semialdehyde dehydrogenase EC:1.2.1.27.
Glyceraldehyde-3-phosphate dehydrogenase EC:1.2.1.9.
Delta-1-pyrroline-5-carboxylate dehydrogenase EC:
1.5.1.12. Acetaldehyde dehydrogenase EC:1.2.1.10.
Glutamate-5-semialdehyde dehydrogenase EC:1.2.1.41.
This family also includes omega crystallin, an eye lens
protein from squid and octopus that has little aldehyde
dehydrogenase activity.
Length = 459
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 30 FVDAVSGRTFPTINPATEDKIADVAEADK 58
+VD+ S T INPAT + IA V A
Sbjct: 1 WVDS-SSETIEVINPATGEVIATVPAATA 28
>gnl|CDD|130783 TIGR01722, MMSDH, methylmalonic acid semialdehyde dehydrogenase.
Involved in valine catabolism,
methylmalonate-semialdehyde dehydrogenase catalyzes the
irreversible NAD+- and CoA-dependent oxidative
decarboxylation of methylmalonate semialdehyde to
propionyl-CoA. Methylmalonate-semialdehyde
dehydrogenase has been characterized in both
prokaryotes and eukaryotes, functioning as a mammalian
tetramer and a bacterial homodimer. Although similar in
monomeric molecular mass and enzymatic activity, the
N-terminal sequence in P.aeruginosa does not correspond
with the N-terminal sequence predicted for rat liver.
Sequence homology to a variety of prokaryotic and
eukaryotic aldehyde dehydrogenases places MMSDH in the
aldehyde dehydrogenase (NAD+) superfamily (pfam00171),
making MMSDH's CoA requirement unique among known
ALDHs. Methylmalonate semialdehyde dehydrogenase is
closely related to betaine aldehyde dehydrogenase,
2-hydroxymuconic semialdehyde dehydrogenase, and class
1 and 2 aldehyde dehydrogenase. In Bacillus, a highly
homologous protein to methylmalonic acid semialdehyde
dehydrogenase, groups out from the main MMSDH clade
with Listeria and Sulfolobus. This Bacillus protein has
been suggested to be located in an iol operon and/or
involved in myo-inositol catabolism, converting malonic
semialdehyde to acetyl CoA ad CO2. The preceeding
enzymes responsible for valine catabolism are present
in Bacillus, Listeria, and Sulfolobus [Energy
metabolism, Amino acids and amines].
Length = 477
Score = 32.5 bits (74), Expect = 0.011
Identities = 12/36 (33%), Positives = 15/36 (41%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+I F + SG P NPAT + VA A
Sbjct: 2 NHWIGGKFAEGASGTYIPVTNPATNEVTTKVAFASV 37
>gnl|CDD|132417 TIGR03374, ABALDH, 1-pyrroline dehydrogenase. Members of this
protein family are 1-pyrroline dehydrogenase
(1.5.1.35), also called gamma-aminobutyraldehyde
dehydrogenase. This enzyme can follow putrescine
transaminase (EC 2.6.1.82) for a two-step conversion of
putrescine to gamma-aminobutyric acid (GABA). The
member from Escherichia coli is characterized as a
homotetramer that binds one NADH per momomer. This
enzyme belongs to the medium-chain aldehyde
dehydrogenases, and is quite similar in sequence to the
betaine aldehyde dehydrogenase (EC 1.2.1.8) family.
Length = 472
Score = 31.9 bits (72), Expect = 0.019
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEAD 57
+L IN V G P NPAT + I ++AEA
Sbjct: 2 HKLLINGELVSG-EGEKQPVYNPATGEVILEIAEAS 36
>gnl|CDD|143449 cd07131, ALDH_AldH-CAJ73105, Uncharacterized Candidatus kuenenia
aldehyde dehydrogenase AldH (CAJ73105)-like.
Uncharacterized aldehyde dehydrogenase of Candidatus
kuenenia AldH (locus CAJ73105) and similar sequences
with similarity to alpha-aminoadipic semialdehyde
dehydrogenase (AASADH, human ALDH7A1, EC=1.2.1.31),
Arabidopsis ALDH7B4, and Streptomyces clavuligerus
delta-1-piperideine-6-carboxylate dehydrogenase (P6CDH)
are included in this CD.
Length = 478
Score = 31.5 bits (72), Expect = 0.027
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 25 FINNAFVDAVSGRTFPTINPA-TEDKIADVAEADK 58
+I +VD+ SG TF + NPA E+ + +
Sbjct: 2 YIGGEWVDSASGETFDSRNPADLEEVVGTFPLSTA 36
>gnl|CDD|183050 PRK11241, gabD, succinate-semialdehyde dehydrogenase I;
Provisional.
Length = 482
Score = 31.4 bits (71), Expect = 0.032
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADV 53
Q IN ++DA +G NPA DK+ V
Sbjct: 12 QALINGEWLDANNGEVIDVTNPANGDKLGSV 42
>gnl|CDD|143431 cd07113, ALDH_PADH_NahF, Escherichia coli NAD+-dependent
phenylacetaldehyde dehydrogenase PadA-like.
NAD+-dependent, homodimeric, phenylacetaldehyde
dehydrogenase (PADH, EC=1.2.1.39) PadA of Escherichia
coli involved in the catabolism of 2-phenylethylamine,
and other related sequences, are present in this CD.
Also included is the Pseudomonas fluorescens ST StyD
PADH involved in styrene catabolism, the Sphingomonas
sp. LB126 FldD protein involved in fluorene
degradation, and the Novosphingobium aromaticivorans
NahF salicylaldehyde dehydrogenase involved in the
NAD+-dependent conversion of salicylaldehyde to
salicylate.
Length = 477
Score = 28.9 bits (65), Expect = 0.22
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 24 LFINNAFVDAVSGRTFPTINPATEDKIADVAEAD 57
FI+ V S + NPATE IA VA A
Sbjct: 2 HFIDGRPVAGQSEKRLDITNPATEQVIASVASAT 35
>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
aldehyde dehydrogenase AldA (AAD23400)-like. Putative
aldehyde dehydrogenase, AldA, from Streptomyces
aureofaciens (locus AAD23400) and other similar
sequences are present in this CD.
Length = 446
Score = 26.3 bits (59), Expect = 1.5
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 42 INPATEDKIADVAEADK 58
INPAT + A A +
Sbjct: 2 INPATGEVFASAPVASE 18
>gnl|CDD|143408 cd07089, ALDH_CddD-AldA-like, Rhodococcus ruber 6-oxolauric acid
dehydrogenase-like and related proteins. The
6-oxolauric acid dehydrogenase (CddD) from Rhodococcus
ruber SC1 which converts 6-oxolauric acid to
dodecanedioic acid; and the aldehyde dehydrogenase
(locus SSP0762) from Staphylococcus saprophyticus
subsp. saprophyticus ATCC 15305 and also, the
Mycobacterium tuberculosis H37Rv ALDH AldA (locus
Rv0768) sequence; and other similar sequences, are
included in this CD.
Length = 459
Score = 26.1 bits (58), Expect = 2.2
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 42 INPATEDKIADVAEADKV 59
INPATE+ I +A
Sbjct: 2 INPATEEVIGTAPDAGAA 19
>gnl|CDD|143421 cd07103, ALDH_F5_SSADH_GabD, Mitochondrial succinate-semialdehyde
dehydrogenase and ALDH family members 5A1 and 5F1-like.
Succinate-semialdehyde dehydrogenase, mitochondrial
(SSADH, GabD, EC=1.2.1.24) catalyzes the NAD+-dependent
oxidation of succinate semialdehyde (SSA) to succinate.
This group includes the human aldehyde dehydrogenase
family 5 member A1 (ALDH5A1) which is a mitochondrial
homotetramer that converts SSA to succinate in the last
step of 4-aminobutyric acid (GABA) catabolism. This CD
also includes the Arabidopsis SSADH gene product
ALDH5F1. Mutations in this gene result in the
accumulation of H2O2, suggesting a role in plant
defense against the environmental stress of elevated
reactive oxygen species.
Length = 451
Score = 25.9 bits (58), Expect = 2.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 42 INPATEDKIADVAEADK 58
INPAT + I +V +A
Sbjct: 2 INPATGEVIGEVPDAGA 18
>gnl|CDD|143405 cd07086, ALDH_F7_AASADH-like, NAD+-dependent alpha-aminoadipic
semialdehyde dehydrogenase and related proteins. ALDH
subfamily which includes the NAD+-dependent,
alpha-aminoadipic semialdehyde dehydrogenase (AASADH,
EC=1.2.1.31), also known as Antiquitin-1, ALDH7A1,
ALDH7B or delta-1-piperideine-6-carboxylate
dehydrogenase (P6CDH), and other similar sequences,
such as the uncharacterized aldehyde dehydrogenase of
Candidatus kuenenia AldH (locus CAJ73105).
Length = 478
Score = 25.6 bits (57), Expect = 2.7
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 25 FINNAFVDAVSGRTFPTINPATEDKIADVAEA 56
I +V + G TF + NPA + IA V A
Sbjct: 2 VIGGEWVGS-GGETFTSRNPANGEPIARVFPA 32
>gnl|CDD|216555 pfam01531, Glyco_transf_11, Glycosyl transferase family 11. This
family contains several fucosyl transferase enzymes.
Length = 298
Score = 25.6 bits (56), Expect = 2.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 52 DVAEADKVNPAKTIVMLISCQH 73
DV A +PA+ +L+ C H
Sbjct: 229 DVYFAGDGSPAEDFALLMQCNH 250
>gnl|CDD|143469 cd07151, ALDH_HBenzADH, NADP+-dependent p-hydroxybenzaldehyde
dehydrogenase-like. NADP+-dependent,
p-hydroxybenzaldehyde dehydrogenase (PchA, HBenzADH)
which catalyzes oxidation of p-hydroxybenzaldehyde to
p-hydroxybenzoic acid and other related sequences are
included in this CD.
Length = 465
Score = 25.3 bits (56), Expect = 4.0
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 31 VDAVSGRTFPTINPATEDKIADVAEADK 58
D S RT +NP T + +A++ A K
Sbjct: 4 RDGTSERTIDVLNPYTGETLAEIPAASK 31
>gnl|CDD|143412 cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8
member A1-like. In humans, the aldehyde dehydrogenase
family 8 member A1 (ALDH8A1) protein functions to
convert 9-cis-retinal to 9-cis-retinoic acid and has a
preference for NAD+. Also included in this CD is the
2-hydroxymuconic semialdehyde dehydrogenase (HMSADH)
which catalyzes the conversion of 2-hydroxymuconic
semialdehyde to 4-oxalocrotonate, a step in the meta
cleavage pathway of aromatic hydrocarbons in bacteria.
Such HMSADHs seen here are: XylG of the TOL plasmid
pWW0 of Pseudomonas putida, TomC of Burkholderia
cepacia G4, and AphC of Comamonas testosterone.
Length = 455
Score = 25.2 bits (56), Expect = 4.1
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 41 TINPATEDKIADVAEADK 58
NPAT + +A V E
Sbjct: 1 NFNPATGEVLAKVPEGGA 18
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 25.0 bits (55), Expect = 4.6
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 27 NNAFVDAVSGRTFP 40
NNA + VSGRT+P
Sbjct: 238 NNAPIIEVSGRTYP 251
>gnl|CDD|213790 TIGR03284, thym_sym, thymidylate synthase. Members of this protein
family are thymidylate synthase, an enzyme that produces
dTMP from dUMP. In prokaryotes, its gene usually is
found close to that for dihydrofolate reductase, and in
some systems the two enzymes are found as a fusion
protein. This model excludes a set of related proteins
(TIGR03283) that appears to replace this family in
archaeal methanogens, where tetrahydrofolate is replaced
by tetrahydromethanopterin [Purines, pyrimidines,
nucleosides, and nucleotides, 2'-Deoxyribonucleotide
metabolism].
Length = 295
Score = 25.1 bits (55), Expect = 5.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 37 RTFPTINPATEDKIADVAEADKVNP 61
R++ T + T D+I +V E K NP
Sbjct: 130 RSWATPDGETIDQIKNVIEMIKTNP 154
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This model
represents HrpA, one of two related but uncharacterized
DEAH-box ATP-dependent helicases in many Proteobacteria
and a few high-GC Gram-positive bacteria. HrpA is about
1300 amino acids long, while its paralog HrpB, also
uncharacterized, is about 800 amino acids long. Related
characterized eukarotic proteins are RNA helicases
associated with pre-mRNA processing [Unknown function,
Enzymes of unknown specificity].
Length = 1283
Score = 25.1 bits (55), Expect = 5.5
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 3/30 (10%)
Query: 22 FQLFINNAFVDAVSGRTFPT---INPATED 48
F NNA + VSGRT+P P E+
Sbjct: 226 FSRHFNNAPIIEVSGRTYPVEVRYRPLVEE 255
>gnl|CDD|129451 TIGR00353, nrfE, c-type cytochrome biogenesis protein CcmF. The
product of this gene is required for the biogenesis of
C-type cytochromes. This gene is thought to have eleven
transmembrane helices. Disruption of this gene in
Paracoccus denitrificans, encoding a putative
transporter, results in formation of an unstable
apocytochrome c and deficiency in siderophore production
[Energy metabolism, Electron transport].
Length = 576
Score = 24.8 bits (54), Expect = 5.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 11/36 (30%)
Query: 19 FLVFQLFINNAFVDAVSGRTFP------TINPATED 48
FL+F LF +N F R FP +NP +D
Sbjct: 84 FLLFVLFTSNPF-----VRIFPFPIEGRDLNPMLQD 114
>gnl|CDD|143428 cd07110, ALDH_F10_BADH, Arabidopsis betaine aldehyde
dehydrogenase 1 and 2, ALDH family 10A8 and 10A9-like.
Present in this CD are the Arabidopsis betaine aldehyde
dehydrogenase (BADH) 1 (chloroplast) and 2
(mitochondria), also known as, aldehyde dehydrogenase
family 10 member A8 and aldehyde dehydrogenase family
10 member A9, respectively, and are putative
dehydration- and salt-inducible BADHs (EC 1.2.1.8) that
catalyze the oxidation of betaine aldehyde to the
compatible solute glycine betaine.
Length = 456
Score = 24.2 bits (53), Expect = 8.3
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 41 TINPATEDKIADVAEAD 57
INPATE I ++ A
Sbjct: 1 VINPATEATIGEIPAAT 17
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 24.6 bits (53), Expect = 8.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 12 SAALAPSFLVFQLFINNAFVDAV 34
S+AL +F VFQ+ N F D V
Sbjct: 304 SSALGEAFTVFQMIHNTPFGDIV 326
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.375
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,133,142
Number of extensions: 321228
Number of successful extensions: 305
Number of sequences better than 10.0: 1
Number of HSP's gapped: 305
Number of HSP's successfully gapped: 55
Length of query: 81
Length of database: 10,937,602
Length adjustment: 50
Effective length of query: 31
Effective length of database: 8,719,902
Effective search space: 270316962
Effective search space used: 270316962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)