RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1100
(81 letters)
>1bxs_A Aldehyde dehydrogenase; retinal, class 1, tetramer, NAD,
cytosolic, oxidoreductase; HET: NAD; 2.35A {Ovis aries}
SCOP: c.82.1.1 PDB: 1o9j_A* 1bi9_A*
Length = 501
Score = 73.0 bits (180), Expect = 3e-17
Identities = 19/36 (52%), Positives = 27/36 (75%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
++FINN + +VSG+ FP NPATE+K+ +V E DK
Sbjct: 22 KIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDK 57
>1o04_A Aldehyde dehydrogenase, mitochondrial precursor; ALDH, NAD, NADH,
isomerization, oxidoreductase; HET: NAD; 1.42A {Homo
sapiens} SCOP: c.82.1.1 PDB: 1nzw_A* 3inl_A* 3n80_A*
1nzz_A* 1o00_A* 1nzx_A* 1o01_A* 1o05_A 1of7_A* 1o02_A*
3inj_A* 3sz9_A* 1zum_A 2onm_A* 2onp_A* 2onn_A 2ono_A*
3n81_A 3n82_A* 3n83_A* ...
Length = 500
Score = 73.0 bits (180), Expect = 4e-17
Identities = 22/36 (61%), Positives = 28/36 (77%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
Q+FINN + DAVS +TFPT+NP+T + I VAE DK
Sbjct: 21 QIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDK 56
>2o2p_A Formyltetrahydrofolate dehydrogenase; aldehyde dehydrogenase,
FDH, oxidoreductase; 1.70A {Rattus norvegicus} PDB:
2o2q_A* 2o2r_A* 3rho_A* 3rhm_A* 3rhj_A* 3rhq_A* 3rhp_A*
3rhr_A* 3rhl_A*
Length = 517
Score = 73.0 bits (180), Expect = 4e-17
Identities = 16/36 (44%), Positives = 19/36 (52%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
QLFI FVDA +T+ TINP I V+ A
Sbjct: 38 QLFIGGEFVDAEGSKTYNTINPTDGSVICQVSLAQV 73
>3iwj_A Putative aminoaldehyde dehydrogenase; rossmann fold, dimer,
betaine aldehyde dehydrogenase, NAD, oxidoreductase;
HET: NAD; 2.15A {Pisum sativum} PDB: 3iwk_A* 4a0m_A*
Length = 503
Score = 71.8 bits (177), Expect = 9e-17
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
QLFIN + V + P INPAT++ I D+ A K
Sbjct: 9 QLFINGDWKAPVLNKRIPVINPATQNIIGDIPAATK 44
>2ve5_A BADH, betaine aldehyde dehydrogenase; aldehyde oxidation, NAD,
NADP complex, oxidoreductase; HET: NAP CSO; 2.10A
{Pseudomonas aeruginosa} PDB: 2wme_A* 2wox_A* 3zqa_A*
2xdr_A*
Length = 490
Score = 71.4 bits (176), Expect = 1e-16
Identities = 16/36 (44%), Positives = 23/36 (63%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+L+I +V+A SG TF TINPA + +A V A +
Sbjct: 8 KLYIGGRYVEASSGATFETINPANGEVLAKVQRASR 43
>3ed6_A Betaine aldehyde dehydrogenase; structural genomics, infecti
deseases, NAD, oxidoreductase, PSI; 1.70A
{Staphylococcus aureus} PDB: 3fg0_A*
Length = 520
Score = 71.1 bits (175), Expect = 2e-16
Identities = 10/36 (27%), Positives = 20/36 (55%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ +I+ +V++ + T INP ++ I V+E K
Sbjct: 34 RQYIDGEWVESANKNTRDIINPYNQEVIFTVSEGTK 69
>3r31_A BADH, betaine aldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.15A {Agrobacterium tumefaciens}
Length = 517
Score = 71.1 bits (175), Expect = 2e-16
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
FI+ +V+ +G F +I PAT + IA + A
Sbjct: 16 SHFIDGDYVEDNTGTPFESIFPATGEMIAKLHAATP 51
>2d4e_A 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase;
HPCC; HET: NAD; 2.10A {Thermus thermophilus}
Length = 515
Score = 68.4 bits (168), Expect = 1e-15
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
FI FV + SG TFP+++PAT + + A +
Sbjct: 28 LHFIAGEFVPSESGETFPSLDPATNEVLGVAARGGE 63
>1wnd_A Putative betaine aldehyde dehydrogenase; NADH, fluorescence,
kinetics, oxidor; 2.10A {Escherichia coli} SCOP:
c.82.1.1 PDB: 1wnb_A
Length = 495
Score = 67.6 bits (166), Expect = 3e-15
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 2 SRQYDIEERGSAALAPSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ E S + +L IN V G P NPAT D + ++AEA
Sbjct: 4 HHHHHHLESTSLYKKAGLMQHKLLINGELVSG-EGEKQPVYNPATGDVLLEIAEASA 59
>3u4j_A NAD-dependent aldehyde dehydrogenase; PSI-biology, nysgrc,
structural genomics, NEW YORK structura genomics
research consortium, tetramer; 2.00A {Sinorhizobium
meliloti}
Length = 528
Score = 66.4 bits (163), Expect = 8e-15
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 22 FQLFINNAFVDAVSGRTFPTINPA-TEDKIADVAEADK 58
+Q+ ++ VDA SG T ++P + + EA
Sbjct: 23 YQMLVDGKSVDAASGSTIDRVSPGHAGEVVGTWPEASA 60
>1a4s_A ALDH, betaine aldehyde dehydrogenase; oxidoreductase, aldehyde
oxidation; 2.10A {Gadus callarias} SCOP: c.82.1.1 PDB:
1bpw_A*
Length = 503
Score = 65.3 bits (160), Expect = 2e-14
Identities = 6/37 (16%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 23 QLFINNAFVDAVSGRTF-PTINPATEDKIADVAEADK 58
+ + + G T P PAT + +
Sbjct: 21 LNYWGGRRIKSKDGATTEPVFEPATGRVLCQMVPCGA 57
>3i44_A Aldehyde dehydrogenase; oxidoreductase, structural genomics,
seattle structural genomics center for infectious
disease, ssgcid; 2.00A {Bartonella henselae}
Length = 497
Score = 61.0 bits (149), Expect = 5e-13
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ +IN + D + I+P+TE+ A ++
Sbjct: 27 KFYINGLWDDPSTPHDLYVIDPSTEEACAVISLGST 62
>3ty7_A Putative aldehyde dehydrogenase SAV2122; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE; 2.40A {Staphylococcus aureus}
Length = 478
Score = 61.0 bits (149), Expect = 5e-13
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ +IN +V++ S T INPATE+ I VA+ +K
Sbjct: 9 KQYINGEWVESNSNETIEVINPATEEVIGKVAKGNK 44
>4f3x_A Putative aldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology; HET: MSE NAD;
2.01A {Sinorhizobium meliloti} PDB: 4dal_A*
Length = 498
Score = 61.0 bits (149), Expect = 5e-13
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
QL I + F + +NP T I D+AEA
Sbjct: 27 QLLIGSRFEAG-TEAEEHILNPRTGAGIIDLAEASH 61
>3b4w_A Aldehyde dehydrogenase; RV0223C-NAD complex, structural genomics,
PSI-2, protein STR initiative; HET: NAD GOL; 1.80A
{Mycobacterium tuberculosis}
Length = 495
Score = 60.2 bits (147), Expect = 1e-12
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+LFI + + PAT + + V A
Sbjct: 10 KLFIGGKWTKPSTSDVIEVRCPATGEYVGKVPMAAA 45
>3r64_A NAD dependent benzaldehyde dehydrogenase; structural genomics,
PSI-biology, NEW YORK structural genomi research
consortium, nysgrc; 2.57A {Corynebacterium glutamicum}
Length = 508
Score = 57.6 bits (140), Expect = 8e-12
Identities = 10/42 (23%), Positives = 16/42 (38%)
Query: 17 PSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ I +V+ S R INP + IA+ +A
Sbjct: 8 AGIDATKHLIGGQWVEGNSDRISTNINPYDDSVIAESKQASI 49
>3prl_A NADP-dependent glyceraldehyde-3-phosphate dehydro; structural
genomics, protein structure initiative, dehydroge
PSI-biology; 2.00A {Bacillus halodurans} PDB: 3rhh_A*
Length = 505
Score = 50.6 bits (122), Expect = 3e-09
Identities = 7/45 (15%), Positives = 16/45 (35%)
Query: 14 ALAPSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
AL + N +V++ +G PA+ + + +
Sbjct: 4 ALQTEQFNANILRNGEWVESRTGERISISAPASGVALGSIPALSQ 48
>3qan_A 1-pyrroline-5-carboxylate dehydrogenase 1; proline oxidation,
redox control, apoptosis, NAD binding, oxidoreductase,
PSI-biology; 1.95A {Bacillus halodurans} PDB: 3rjl_A
Length = 538
Score = 50.3 bits (121), Expect = 4e-09
Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 22 FQLFINNAFVDAVSGRTFPTINPA-TEDKIADVAEADK 58
+ L IN V + + NPA + + V++A++
Sbjct: 38 YPLIINGERVT--TEDKIQSWNPARKDQLVGSVSKANQ 73
>2imp_A Lactaldehyde dehydrogenase; protein-lactate-NADH ternary complex,
oxidoreductase; HET: NAI; 2.10A {Escherichia coli} PDB:
2ilu_A* 2hg2_A* 2opx_A*
Length = 479
Score = 50.2 bits (121), Expect = 4e-09
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
++I+ FV +NPATE I+ + +
Sbjct: 8 PMYIDGQFVTWRGDAWIDVVNPATEAVISRIPDGQA 43
>3k2w_A Betaine-aldehyde dehydrogenase; structural genomics, PSI-2,
protein initiative; 1.90A {Pseudoalteromonas atlantica
T6C}
Length = 497
Score = 49.9 bits (120), Expect = 5e-09
Identities = 9/42 (21%), Positives = 16/42 (38%)
Query: 17 PSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
F FI +V + T ++P+T I ++ K
Sbjct: 8 LHFKNKVNFIGGQYVPSNESDTIDILSPSTGKVIGEIPAGCK 49
>3ifg_A Succinate-semialdehyde dehydrogenase (NADP+); niaid,.infectious
disease, ssgcid, seattle structural genomi for
infectious disease; 2.70A {Burkholderia pseudomallei}
PDB: 3ifh_Q
Length = 484
Score = 49.1 bits (118), Expect = 8e-09
Identities = 13/42 (30%), Positives = 19/42 (45%)
Query: 17 PSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
PS L Q +I + A S TF +PAT + + V +
Sbjct: 8 PSLLRHQAYIGGEWQAADSDATFEVFDPATGESLGTVPKMGA 49
>3rh9_A Succinate-semialdehyde dehydrogenase (NAD(P)(+)); structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.63A {Marinobacter aquaeolei}
Length = 506
Score = 49.1 bits (118), Expect = 8e-09
Identities = 13/42 (30%), Positives = 17/42 (40%)
Query: 17 PSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
P +I + D+ G TF NPAT IA V +
Sbjct: 7 PLLENLTGYIGGRWKDSAGGATFDVYNPATGSVIAKVPSMPE 48
>2y53_A Aldehyde dehydrogenase (BOX pathway); oxidoreductase, NADP,
nucleotide-binding; HET: NAP; 1.40A {Burkholderia
xenovorans LB400} PDB: 2y52_A 2y51_A 2vro_A* 2y5d_A*
Length = 534
Score = 49.2 bits (118), Expect = 9e-09
Identities = 4/35 (11%), Positives = 12/35 (34%), Gaps = 1/35 (2%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEAD 57
+ + ++ +G +P T + V+
Sbjct: 9 KNHVAGQWIAG-TGAGITLTDPVTGVALVRVSSEG 42
>3ek1_A Aldehyde dehydrogenase; ssgcid, oxidoreductase, structural
genomics; HET: MES; 2.10A {Brucella melitensis biovar
ABORTUS2308}
Length = 504
Score = 48.7 bits (117), Expect = 1e-08
Identities = 14/42 (33%), Positives = 17/42 (40%)
Query: 17 PSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
PS L Q +N ++DA G T NPA I V
Sbjct: 28 PSLLKSQCLVNGRWIDAADGTTIKVTNPADGSVIGTVPSLSV 69
>3jz4_A Succinate-semialdehyde dehydrogenase [NADP+]; tetramer, NADP
binding, oxidoreductase; HET: NAP; 2.30A {Escherichia
coli}
Length = 481
Score = 48.7 bits (117), Expect = 1e-08
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 17 PSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ Q IN ++DA +G NPA DK+ V +
Sbjct: 5 SNLFRQQALINGEWLDANNGEAIDVTNPANGDKLGSVPKMGA 46
>1uzb_A 1-pyrroline-5-carboxylate dehydrogenase; oxidoreductase, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; 1.4A {Thermus thermophilus} SCOP:
c.82.1.1 PDB: 2eiw_A 2bhq_A* 2bhp_A* 2bja_A* 2bjk_A*
2ehq_A* 2ehu_A* 2eii_A* 2eit_A* 2ej6_A 2ejd_A* 2ejl_A
2iy6_A* 2j40_A* 2j5n_A*
Length = 516
Score = 48.3 bits (116), Expect = 2e-08
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 22 FQLFINNAFVDAVSGRTFPTINPA-TEDKIADVAEADK 58
+ L+I +VD + ++NP+ + + A+A K
Sbjct: 38 YPLYIGGEWVD--TKERMVSLNPSAPSEVVGTTAKAGK 73
>3ju8_A Succinylglutamic semialdehyde dehydrogenase; alpha-beta
structure, structural genomics, PSI-2, protein ST
initiative; HET: NAD; 1.82A {Pseudomonas aeruginosa}
Length = 490
Score = 47.9 bits (115), Expect = 3e-08
Identities = 6/41 (14%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 18 SFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ ++ +I ++ G T +++P + + AD
Sbjct: 2 NAMMSTHYIAGQWLAG-QGETLESLDPVGQGVVWSGRGADA 41
>1uxt_A Glyceraldehyde-3-phosphate dehydrogenase (NADP+); GAPN, ALDH,
glucose 1-phosphate, glycolysis, regulation, catatysis,
oxidoreductase; HET: G1P NAD; 2.2A {Thermoproteus
tenax} SCOP: c.82.1.1 PDB: 1uxp_A* 1uxq_A* 1uxr_A*
1uxn_A* 1uxu_A* 1uxv_A* 1ky8_A*
Length = 501
Score = 45.6 bits (109), Expect = 1e-07
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 21 VFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
V+ ++ + SG+ +P IA V +
Sbjct: 18 VYPSYLAGEWGG--SGQEIEVKSPIDLATIAKVISPSR 53
>4dng_A Uncharacterized aldehyde dehydrogenase ALDY; structural genomics,
protein structure initiative, nysgrc, P biology; 2.50A
{Bacillus subtilis}
Length = 485
Score = 45.3 bits (108), Expect = 2e-07
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ FIN + SGRT +NP + I + A
Sbjct: 8 KSFINGKWTGGESGRTEDILNPYDQSVITTASLATG 43
>2w8n_A Succinate-semialdehyde dehydrogenase, mitochondrial;
mitochondrion, oxidoreductase, transit peptide, disease
mutation, SSA, NAD, ssadh; 2.00A {Homo sapiens} PDB:
2w8o_A 2w8p_A 2w8q_A 2w8r_A*
Length = 487
Score = 42.9 bits (102), Expect = 2e-06
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 17 PSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ L F+ ++ A TFP +PA+ + VA+
Sbjct: 8 AALLRTDSFVGGRWLPA--AATFPVQDPASGAALGMVADCGV 47
>3pqa_A Lactaldehyde dehydrogenase; structural genomics, protein
structure initiative, nysgrc, P biology,
oxidoreductase; 1.50A {Methanocaldococcus jannaschii}
PDB: 3rhd_A*
Length = 486
Score = 42.2 bits (100), Expect = 3e-06
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 24 LFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+FI+ +++ INP + + I + +
Sbjct: 2 MFIDGKWIN---REDMDVINPYSLEVIKKIPALSR 33
>1t90_A MMSDH, probable methylmalonate-semialdehyde dehydrogenase;
oxidoreductase, NAD; HET: NAD; 2.50A {Bacillus
subtilis}
Length = 486
Score = 39.9 bits (94), Expect = 2e-05
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ +IN +V++ + + +NPAT++ + V + K
Sbjct: 7 KNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTK 42
>4e4g_A Methylmalonate-semialdehyde dehydrogenase; structural genomics,
protein structure INI nysgrc, PSI-biology; 2.90A
{Sinorhizobium meliloti}
Length = 521
Score = 39.5 bits (93), Expect = 2e-05
Identities = 13/36 (36%), Positives = 15/36 (41%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
FI+ V SGR NPAT + VA A
Sbjct: 28 GHFIDGKRVAGTSGRVSNIFNPATGEVQGTVALASD 63
>1euh_A NADP dependent non phosphorylating glyceraldehyde-3-phosphate
dehydrogenase; oxidoreductase; 1.82A {Streptococcus
mutans} SCOP: c.82.1.1 PDB: 1qi6_A 2euh_A* 2id2_A*
2qe0_A* 2esd_A* 1qi1_A*
Length = 475
Score = 39.4 bits (93), Expect = 3e-05
Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
++ ++N + S PA+ ++ V
Sbjct: 5 YKNYVNGEWKL--SENEIKIYEPASGAELGSVPAMST 39
>3v4c_A Aldehyde dehydrogenase (NADP+); structural genomics, PSI-biology,
nysgrc, NEW YORK structura genomics research
consortium; HET: PE4; 1.91A {Sinorhizobium meliloti}
Length = 528
Score = 37.8 bits (88), Expect = 1e-04
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 23 QLFINNAFVD-AVSGRTFPTINPATEDKIADVAEAD 57
+ + ++D A + + P PA + + V +
Sbjct: 31 KHLVAGEWLDGAGTFASAPAHGPAHDFAVGTVELVN 66
>1ez0_A ALDH, aldehyde dehydrogenase; nucleotide binding domain, NADP+,
oxidoreductase; HET: NAP; 2.10A {Vibrio harveyi} SCOP:
c.82.1.1 PDB: 1eyy_A*
Length = 510
Score = 36.9 bits (86), Expect = 2e-04
Identities = 3/28 (10%), Positives = 8/28 (28%), Gaps = 1/28 (3%)
Query: 31 VDAVSGRTFPTINPATEDKIA-DVAEAD 57
++ + F N T + +
Sbjct: 1 MNPQTDNVFYATNAFTGEALPLAFPVHT 28
>2j6l_A Aldehyde dehydrogenase family 7 member A1; NAD, reductase,
oxidoreductase, lysine catabolism; HET: NAI; 1.3A {Homo
sapiens} PDB: 2jg7_A*
Length = 500
Score = 35.2 bits (82), Expect = 7e-04
Identities = 9/36 (25%), Positives = 14/36 (38%), Gaps = 2/36 (5%)
Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
+ N ++ G T PA + IA V +A
Sbjct: 25 EGVYNGSWGG--RGEVITTYCPANNEPIARVRQASV 58
>3etf_A Putative succinate-semialdehyde dehydrogenase; center for ST
genomics of infectious diseases, oxidoreductase, csgid;
1.85A {Salmonella typhimurium} PDB: 3efv_A
Length = 462
Score = 30.2 bits (69), Expect = 0.042
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 35 SGRTFPTINPATEDKIADVAEADK 58
+ ++NPAT +A + A+
Sbjct: 5 TATQALSVNPATGQTLAAMPWANA 28
>3ros_A NAD-dependent aldehyde dehydrogenase; nysgrc, PSI-biology,
structural genomics, NEW YORK structura genomics
research consortium; 1.88A {Lactobacillus acidophilus}
Length = 484
Score = 29.0 bits (66), Expect = 0.11
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 37 RTFPTINPATEDKIADVAEADK 58
+ ++NP T + A
Sbjct: 4 SKYQSVNPYTNEAFASYDNPTS 25
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.30
Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 24/84 (28%)
Query: 11 GSAALAPSFLV-FQLFIN-----NAFVDAVSGRTFPTINPATEDKIADVAE--------- 55
GS L LV F F + PT A +D+ AE
Sbjct: 14 GS--LEHVLLVPTASFFIASQLQEQFNKILPE---PTEGFAADDEPTTPAELVGKFLGYV 68
Query: 56 ADKVNPAK----TIVMLISCQHLE 75
+ V P+K V+ + E
Sbjct: 69 SSLVEPSKVGQFDQVLNLCLTEFE 92
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene,
structural GEN NPPSFA; NMR {Escherichia coli str}
Length = 107
Score = 25.4 bits (56), Expect = 1.7
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 1 MSRQYDIEERGSAALAPSFL 20
M + IEE+ AA P FL
Sbjct: 8 MMIRERIEEKLRAAFQPVFL 27
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase,
ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET:
ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Length = 773
Score = 25.0 bits (55), Expect = 3.2
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 22 FQLFINNAFVDAVSGRTFP 40
FQ + N+A + AV GRT+P
Sbjct: 255 FQRYFNDAPLLAVPGRTYP 273
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller
coated-PITS, membrane PR; 2.60A {Rattus norvegicus}
SCOP: a.118.1.4 b.69.6.1
Length = 494
Score = 24.9 bits (54), Expect = 3.3
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 54 AEADKVNPAKTIVMLISCQHLEVFNLRA 81
A++ +NPA ++ L + + L++FN+
Sbjct: 68 ADSAIMNPASKVIALKAGKTLQIFNIEM 95
>4dy0_A GLIA-derived nexin; serpin, protease inhibitor, thrombin, cell
surface, hydrolas inhibitor; HET: IDS SGN; 2.35A {Homo
sapiens} PDB: 4dy7_C
Length = 379
Score = 24.9 bits (55), Expect = 3.3
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 46 TEDKIADVAEADKVNPAKTIVMLI 69
T D I ++ D ++ T ++L+
Sbjct: 142 TRDMIDNLLSPDLIDGVLTRLVLV 165
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET:
VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A
3gd1_I 1c9i_A 1c9l_A
Length = 365
Score = 24.9 bits (54), Expect = 3.5
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 54 AEADKVNPAKTIVMLISCQHLEVFNLRA 81
A++ +NPA ++ L + + L++FN+
Sbjct: 69 ADSAIMNPASKVIALKAGKTLQIFNIEM 96
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 23.8 bits (51), Expect = 8.4
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 54 AEADKVNPAKTIVMLISCQHLEVFNLRA 81
A++ +NPA ++ L + + L++FN+
Sbjct: 68 ADSAIMNPASKVIALKAGKTLQIFNIEM 95
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.375
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,215,461
Number of extensions: 59682
Number of successful extensions: 168
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 49
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)