RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1100
         (81 letters)



>d1o04a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
          {Human (Homo sapiens), mitochondrial [TaxId: 9606]}
          Length = 494

 Score = 59.6 bits (144), Expect = 6e-13
 Identities = 23/42 (54%), Positives = 29/42 (69%)

Query: 17 PSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
          P     Q+FINN + DAVS +TFPT+NP+T + I  VAE DK
Sbjct: 9  PEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDK 50


>d1bxsa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
          {Sheep (Ovis aries) [TaxId: 9940]}
          Length = 494

 Score = 57.3 bits (138), Expect = 4e-12
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query: 17 PSFLVFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
            F   ++FINN +  +VSG+ FP  NPATE+K+ +V E DK
Sbjct: 9  LQFKYTKIFINNEWHSSVSGKKFPVFNPATEEKLCEVEEGDK 50


>d1ky8a_ c.82.1.1 (A:) Non-phosphorylating
          glyceraldehyde-3-phosphate dehydrogenase GapN {Archaeon
          Thermoproteus tenax [TaxId: 2271]}
          Length = 499

 Score = 50.7 bits (120), Expect = 9e-10
 Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 2/38 (5%)

Query: 21 VFQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
          V+  ++   +    SG+     +P     IA V    +
Sbjct: 16 VYPSYLAGEWGG--SGQEIEVKSPIDLATIAKVISPSR 51


>d1wnda_ c.82.1.1 (A:) Putative betaine aldehyde dehydrogenase
          YdcW {Escherichia coli [TaxId: 562]}
          Length = 474

 Score = 50.2 bits (119), Expect = 1e-09
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 23 QLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
          +L IN   V    G   P  NPAT D + ++AEA  
Sbjct: 4  KLLINGELVSG-EGEKQPVYNPATGDVLLEIAEASA 38


>d1euha_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
          {Streptococcus mutans [TaxId: 1309]}
          Length = 474

 Score = 48.0 bits (113), Expect = 1e-08
 Identities = 5/37 (13%), Positives = 13/37 (35%), Gaps = 2/37 (5%)

Query: 22 FQLFINNAFVDAVSGRTFPTINPATEDKIADVAEADK 58
          ++ ++N  +    S        PA+  ++  V     
Sbjct: 4  YKNYVNGEWKL--SENEIKIYEPASGAELGSVPAMST 38


>d1a4sa_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
          {Baltic cod (Gadus callarias) [TaxId: 8053]}
          Length = 503

 Score = 47.0 bits (111), Expect = 2e-08
 Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 1/35 (2%)

Query: 25 FINNAFVDAVSGRTF-PTINPATEDKIADVAEADK 58
          +     + +  G T  P   PAT   +  +     
Sbjct: 23 YWGGRRIKSKDGATTEPVFEPATGRVLCQMVPCGA 57


>d1uzba_ c.82.1.1 (A:) 1-pyrroline-5-carboxylate dehydrogenase
          {Thermus thermophilus [TaxId: 274]}
          Length = 516

 Score = 42.6 bits (99), Expect = 7e-07
 Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 22 FQLFINNAFVDAVSGRTFPTINP-ATEDKIADVAEADK 58
          + L+I   +VD  +     ++NP A  + +   A+A K
Sbjct: 38 YPLYIGGEWVD--TKERMVSLNPSAPSEVVGTTAKAGK 73


>d1ez0a_ c.82.1.1 (A:) Aldehyde reductase (dehydrogenase), ALDH
          {Vibrio harveyi [TaxId: 669]}
          Length = 504

 Score = 31.6 bits (70), Expect = 0.006
 Identities = 3/25 (12%), Positives = 7/25 (28%), Gaps = 1/25 (4%)

Query: 35 SGRTFPTINPATEDKIAD-VAEADK 58
          +   F   N  T + +        +
Sbjct: 1  TDNVFYATNAFTGEALPLAFPVHTE 25


>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain
          {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 327

 Score = 25.4 bits (56), Expect = 0.66
 Identities = 8/28 (28%), Positives = 18/28 (64%)

Query: 54 AEADKVNPAKTIVMLISCQHLEVFNLRA 81
          A++  +NPA  ++ L + + L++FN+  
Sbjct: 65 ADSAIMNPASKVIALKAGKTLQIFNIEM 92


>d2gz4a1 a.211.1.1 (A:6-205) Hypothetical protein Atu1052
          {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 200

 Score = 24.9 bits (54), Expect = 1.4
 Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 29 AFVDAVSGRTFPTINPATED-KIADVAEA 56
          A+   +SGR    ++P+  D +IAD+A  
Sbjct: 4  AWQRMLSGRRLDLLDPSPLDVEIADIAHG 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.375 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 280,384
Number of extensions: 10029
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 10
Length of query: 81
Length of database: 2,407,596
Length adjustment: 47
Effective length of query: 34
Effective length of database: 1,762,286
Effective search space: 59917724
Effective search space used: 59917724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.2 bits)