BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11001
(81 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|H Chain H, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|I Chain I, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|J Chain J, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|K Chain K, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications.
pdb|2VDC|L Chain L, The 9.5 A Resolution Structure Of Glutamate Synthase From
Cryo-Electron Microscopy And Its Oligomerization
Behavior In Solution: Functional Implications
Length = 456
Score = 48.9 bits (115), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 3 GRVCPAP--CEGACVL-GINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIV 58
GR+CP CEG CV+ AVTI ++E I D A++QGW+KP P+ G V ++
Sbjct: 70 GRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVI 128
>pdb|2H94|A Chain A, Crystal Structure And Mechanism Of Human Lysine-Specific
Demethylase-1
Length = 664
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
IKP +PT +TGK V I+GSG SGL AA QL
Sbjct: 99 IKP-LPTKKTGK-VIIIGSGVSGLAAARQL 126
>pdb|2HKO|A Chain A, Crystal Structure Of Lsd1
Length = 664
Score = 35.0 bits (79), Expect = 0.011, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
IKP +PT +TGK V I+GSG SGL AA QL
Sbjct: 99 IKP-LPTKKTGK-VIIIGSGVSGLAAARQL 126
>pdb|2EJR|A Chain A, Lsd1-Tranylcypromine Complex
pdb|2Z3Y|A Chain A, Crystal Structure Of Lysine-Specific Demethylase1
pdb|2Z5U|A Chain A, Crystal Structure Of Lysine-Specific Histone Demethylase 1
pdb|3ABT|A Chain A, Crystal Structure Of Lsd1 In Complex With Trans-2-
Pentafluorophenylcyclopropylamine
pdb|3ABU|A Chain A, Crystal Structure Of Lsd1 In Complex With A 2-Pcpa
Derivative, S1201
Length = 662
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
IKP +PT +TGK V I+GSG SGL AA QL
Sbjct: 99 IKP-LPTKKTGK-VIIIGSGVSGLAAARQL 126
>pdb|2DW4|A Chain A, Crystal Structure Of Human Lsd1 At 2.3 A Resolution
Length = 660
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
IKP +PT +TGK V I+GSG SGL AA QL
Sbjct: 99 IKP-LPTKKTGK-VIIIGSGVSGLAAARQL 126
>pdb|2IW5|A Chain A, Structural Basis For Corest-dependent Demethylation Of
Nucleosomes By The Human Lsd1 Histone Demethylase
pdb|2UXN|A Chain A, Structural Basis Of Histone Demethylation By Lsd1 Revealed
By Suicide Inactivation
pdb|2UXX|A Chain A, Human Lsd1 Histone Demethylase-Corest In Complex With An
Fad-Tranylcypromine Adduct
Length = 666
Score = 35.0 bits (79), Expect = 0.012, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
IKP +PT +TGK V I+GSG SGL AA QL
Sbjct: 100 IKP-LPTKKTGK-VIIIGSGVSGLAAARQL 127
>pdb|2X0L|A Chain A, Crystal Structure Of A Neuro-Specific Splicing Variant Of
Human Histone Lysine Demethylase Lsd1
Length = 734
Score = 34.7 bits (78), Expect = 0.012, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
IKP +PT +TGK V I+GSG SGL AA QL
Sbjct: 148 IKP-LPTKKTGK-VIIIGSGVSGLAAARQL 175
>pdb|2V1D|A Chain A, Structural Basis Of Lsd1-Corest Selectivity In Histone H3
Recognition
pdb|2Y48|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A N-
Terminal Snail Peptide
Length = 730
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
IKP +PT +TGK V I+GSG SGL AA QL
Sbjct: 148 IKP-LPTKKTGK-VIIIGSGVSGLAAARQL 175
>pdb|2YG3|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG3|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Enzyme
pdb|2YG4|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
pdb|2YG4|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: Wild Type Bound To Putrescine
Length = 453
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNK 73
+PTL+ + VAIVG+GPSGL AA L K
Sbjct: 1 VPTLQ--RDVAIVGAGPSGLAAATALRK 26
>pdb|2YG5|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c Mutant
Length = 453
Score = 34.3 bits (77), Expect = 0.019, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNK 73
+PTL+ + VAIVG+GPSGL AA L K
Sbjct: 1 VPTLQ--RDVAIVGAGPSGLAAATALRK 26
>pdb|2YG7|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
pdb|2YG7|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: A394c-A396t-Q431g Triple Mutant
Length = 453
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 17/28 (60%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNK 73
+PTL+ + VAIVG+GPSGL AA L K
Sbjct: 1 VPTLQ--RDVAIVGAGPSGLAAATALRK 26
>pdb|2XAF|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (+)-Cis-2-Phenylcyclopropyl-1-Amine
pdb|2XAG|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
Para-Bromo- (-)-Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAH|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With (+)-
Trans-2-Phenylcyclopropyl-1-Amine
pdb|2XAJ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With
(-)-Trans- 2-Phenylcyclopropyl-1-Amine
pdb|2XAQ|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2584, 13b)
pdb|2XAS|A Chain A, Crystal Structure Of Lsd1-Corest In Complex With A
Tranylcypromine Derivative (Mc2580, 14e)
Length = 852
Score = 33.5 bits (75), Expect = 0.029, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
IKP +PT +TGK V I+GSG SGL AA QL
Sbjct: 270 IKP-LPTKKTGK-VIIIGSGVSGLAAARQL 297
>pdb|3UKQ|A Chain A, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|B Chain B, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|C Chain C, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|D Chain D, Crystal Structure Of R327k Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 510
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V ++G+GP+GLGAA +LN+ G
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDG 30
>pdb|3UKK|A Chain A, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|B Chain B, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|C Chain C, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|D Chain D, Crystal Structure Of R182k-Udp-Galactopuranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 517
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V ++G+GP+GLGAA +LN+ G
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDG 30
>pdb|3UKH|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
Length = 519
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V ++G+GP+GLGAA +LN+ G
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDG 30
>pdb|3UKL|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
Length = 510
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V ++G+GP+GLGAA +LN+ G
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDG 30
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From
Arthrobacter Aurescens
Length = 482
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 53 KKVAIVGSGPSGLGAAHQLNK 73
+ V IVG+GPSGL AA +L K
Sbjct: 8 RDVVIVGAGPSGLTAARELKK 28
>pdb|3UTE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTH|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|3UTH|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate
Udp-Galp In Reduced State
pdb|4GDC|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDD|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDE|A Chain A, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|B Chain B, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|C Chain C, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|D Chain D, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
Length = 513
Score = 30.4 bits (67), Expect = 0.24, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V ++G+GP+GLGAA +LN+ G
Sbjct: 13 VLVIGAGPTGLGAAKRLNQIDG 34
>pdb|3UKP|A Chain A, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|B Chain B, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|C Chain C, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|D Chain D, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|E Chain E, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|F Chain F, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|G Chain G, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|H Chain H, Crystal Structure Of R327a Udp-Galactopyranose Mutase
From Aspergillus Fumigatus In Complex With Udpgalp
Length = 509
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V ++G+GP+GLGAA +LN+ G
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDG 30
>pdb|3K30|A Chain A, Histamine Dehydrogenase From Nocardiodes Simplex
pdb|3K30|B Chain B, Histamine Dehydrogenase From Nocardiodes Simplex
Length = 690
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 37 FEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
+ +GW I + +V +VG+GPSGL AA L
Sbjct: 376 WRRGWHPERIRAKESDARVLVVGAGPSGLEAARAL 410
>pdb|2YG6|A Chain A, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
pdb|2YG6|B Chain B, Structure-Based Redesign Of Cofactor Binding In
Putrescine Oxidase: P15i-A394c Double Mutant
Length = 453
Score = 30.0 bits (66), Expect = 0.35, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 20/28 (71%), Gaps = 2/28 (7%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNK 73
+PTL+ + VAIVG+G SGL AA L K
Sbjct: 1 VPTLQ--RDVAIVGAGISGLAAATALRK 26
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 44 PEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
P P +G++V ++G+G SG+ + Q+ K+A
Sbjct: 178 PHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 44 PEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
P P +G++V ++G+G SG+ + Q+ K+A
Sbjct: 178 PHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 44 PEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
P P +G++V ++G+G SG+ + Q+ K+A
Sbjct: 178 PHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 29.6 bits (65), Expect = 0.42, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 44 PEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
P P +G++V ++G+G SG+ + Q+ K+A
Sbjct: 178 PHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAA 210
>pdb|4DSG|A Chain A, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSG|B Chain B, Crystal Structure Of Oxidized Udp-Galactopyranose Mutase
pdb|4DSH|A Chain A, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
pdb|4DSH|B Chain B, Crystal Structure Of Reduced Udp-Galactopyranose Mutase
Length = 484
Score = 29.6 bits (65), Expect = 0.44, Method: Composition-based stats.
Identities = 11/20 (55%), Positives = 17/20 (85%)
Query: 54 KVAIVGSGPSGLGAAHQLNK 73
K+ I+G+GP+GLGAA +L +
Sbjct: 11 KIVIIGAGPTGLGAAVRLTE 30
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To
Flavin- Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNKE 74
+PT+R K+AI+G+GPSGL A L E
Sbjct: 5 LPTIR---KIAIIGAGPSGLVTAKALLAE 30
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo) From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 29.6 bits (65), Expect = 0.45, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNKE 74
+PT+R K+AI+G+GPSGL A L E
Sbjct: 3 LPTIR---KIAIIGAGPSGLVTAKALLAE 28
>pdb|3UKA|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKA|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus
pdb|3UKF|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
pdb|3UKF|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp (Reduced)
Length = 509
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 18/22 (81%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V ++G+GP+GLGAA +LN+ G
Sbjct: 9 VLVIGAGPTGLGAAKRLNQIDG 30
>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase
pdb|1SEZ|B Chain B, Crystal Structure Of Protoporphyrinogen Ix Oxidase
Length = 504
Score = 29.3 bits (64), Expect = 0.63, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 51 TGKKVAIVGSGPSGLGAAHQL 71
+ K+VA++G+G SGL AA++L
Sbjct: 12 SAKRVAVIGAGVSGLAAAYKL 32
>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVD|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus With Acifluorfen
pdb|2IVE|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
pdb|2IVE|B Chain B, Structure Of Protoporphyrinogen Oxidase From Myxococcus
Xanthus
Length = 478
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
TG VA+VG G SGL AH L + GT+ +
Sbjct: 15 TGMNVAVVGGGISGLAVAHHL-RSRGTDAV 43
>pdb|1NI5|A Chain A, Structure Of The Mesj Pp-Atpase From Escherichia Coli
Length = 433
Score = 28.9 bits (63), Expect = 0.72, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 59 GSGPSGLGAAHQLNKEAGTELIK 81
GSGP+GL A ++++ AGT LI+
Sbjct: 132 GSGPAGLSAXAEVSEFAGTRLIR 154
>pdb|1B37|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B37|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|A Chain A, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|B Chain B, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1B5Q|C Chain C, A 30 Angstrom U-Shaped Catalytic Tunnel In The Crystal
Structure Of Polyamine Oxidase
pdb|1H81|A Chain A, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|B Chain B, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H81|C Chain C, Structure Of Polyamine Oxidase In The Reduced State
pdb|1H82|A Chain A, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|B Chain B, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H82|C Chain C, Structure Of Polyamine Oxidase In Complex With Guazatine
pdb|1H83|A Chain A, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|B Chain B, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H83|C Chain C, Structure Of Polyamine Oxidase In Complex With 1,8-
Diaminooctane
pdb|1H84|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H84|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 4.6
pdb|1H86|A Chain A, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|B Chain B, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
pdb|1H86|C Chain C, Covalent Adduct Between Polyamine Oxidase And N1ethyln11
((Cycloheptyl)methyl)4,8diazaundecane At Ph 7.0
Length = 472
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
G +V +VG+G SG+ AA +L++ T+L+
Sbjct: 4 GPRVIVVGAGMSGISAAKRLSEAGITDLL 32
>pdb|3KPF|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KPF|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays
pdb|3KU9|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3KU9|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermine
pdb|3L1R|A Chain A, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
pdb|3L1R|B Chain B, X-Ray Structure Of The Mutant Lys300met Of Polyamine
Oxidase From Zea Mays In Complex With Spermidine
Length = 478
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 21/29 (72%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
G +V +VG+G SG+ AA +L++ T+L+
Sbjct: 4 GPRVIVVGAGMSGISAAKRLSEAGITDLL 32
>pdb|1XHC|A Chain A, Nadh Oxidase /nitrite Reductase From Pyrococcus Furiosus
Pfu-1140779- 001
Length = 367
Score = 28.1 bits (61), Expect = 1.2, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNK 73
G KV IVG+GP G A QL++
Sbjct: 8 GSKVVIVGNGPGGFELAKQLSQ 29
>pdb|4IBO|A Chain A, Crystal Structure Of A Putative Gluconate Dehydrogenase
From Agrobacterium Tumefaciens (Target Efi-506446)
pdb|4IBO|B Chain B, Crystal Structure Of A Putative Gluconate Dehydrogenase
From Agrobacterium Tumefaciens (Target Efi-506446)
pdb|4IBO|C Chain C, Crystal Structure Of A Putative Gluconate Dehydrogenase
From Agrobacterium Tumefaciens (Target Efi-506446)
pdb|4IBO|D Chain D, Crystal Structure Of A Putative Gluconate Dehydrogenase
From Agrobacterium Tumefaciens (Target Efi-506446)
Length = 271
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 21 PAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSG 61
P + ++ A+ID+ W+K P R GK +VG+
Sbjct: 205 PGYMLTDMNQALIDNPEFDAWVKARTPAKRWGKPQELVGTA 245
>pdb|2YNM|D Chain D, Structure Of The Adpxalf3-stabilized Transition State Of
The Nitrogenase-like Dark-operative Protochlorophyllide
Oxidoreductase Complex From Prochlorococcus Marinus With
Its Substrate Protochlorophyllide A
Length = 530
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
TGK+V I G G L AA N+E G E++
Sbjct: 295 TGKRVFIFGDGTHVLAAARIANEELGFEVV 324
>pdb|1DJQ|A Chain A, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJQ|B Chain B, Structural And Biochemical Characterization Of Recombinant
C30a Mutant Of Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
Length = 729
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 21 PAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGT 77
P + +N A + +GW + + V IVG+GPSG AA L + T
Sbjct: 361 PMICTQN---ATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYT 414
>pdb|2TMD|A Chain A, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|2TMD|B Chain B, Correlation Of X-Ray Deduced And Experimental Amino Acid
Sequences Of Trimethylamine Dehydrogenase
pdb|1DJN|A Chain A, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1DJN|B Chain B, Structural And Biochemical Characterization Of Recombinant
Wild Type Trimethylamine Dehydrogenase From
Methylophilus Methylotrophus (Sp. W3a1)
pdb|1O94|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O94|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|A Chain A, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
pdb|1O95|B Chain B, Ternary Complex Between Trimethylamine Dehydrogenase And
Electron Transferring Flavoprotein
Length = 729
Score = 27.3 bits (59), Expect = 2.2, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 21 PAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGT 77
P + +N A + +GW + + V IVG+GPSG AA L + T
Sbjct: 361 PMICTQN---ATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAARVLMESGYT 414
>pdb|4E0V|A Chain A, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
pdb|4E0V|B Chain B, Structure Of L-Amino Acid Oxidase From The B.
Jararacussu Venom
Length = 497
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 43 KPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
K + T K+V IVG+G SGL AA+ L
Sbjct: 37 KNGLSTTSNPKRVVIVGAGMSGLSAAYVL 65
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin
Containing Monooxygenase In Complex With Indole
Length = 464
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 54 KVAIVGSGPSGLGA--AHQLNKEAGTEL 79
++AI+G+GPSG+ A Q +E G E+
Sbjct: 4 RIAILGAGPSGMAQLRAFQSAQEKGAEI 31
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 54 KVAIVGSGPSGLGA--AHQLNKEAGTEL 79
++AI+G+GPSG+ A Q +E G E+
Sbjct: 4 RIAILGAGPSGMAQLRAFQSAQEKGAEI 31
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 54 KVAIVGSGPSGLGA--AHQLNKEAGTEL 79
++AI+G+GPSG+ A Q +E G E+
Sbjct: 9 RIAILGAGPSGMAQLRAFQSAQEKGAEI 36
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 54 KVAIVGSGPSGLGA--AHQLNKEAGTEL 79
++AI+G+GPSG+ A Q +E G E+
Sbjct: 9 RIAILGAGPSGMAQLRAFQSAQEKGAEI 36
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen- Activation By Flavin-Containing Monooxygenase:
Asn78ser Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen- Activation By Flavin-Containing Monooxygenase:
Asn78ser Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen- Activation By Flavin-Containing Monooxygenase:
Asn78ser Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen- Activation By Flavin-Containing Monooxygenase:
Asn78ser Mutant
Length = 461
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 54 KVAIVGSGPSGLGA--AHQLNKEAGTEL 79
++AI+G+GPSG+ A Q +E G E+
Sbjct: 9 RIAILGAGPSGMAQLRAFQSAQEKGAEI 36
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex
With Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 54 KVAIVGSGPSGLGA--AHQLNKEAGTEL 79
++AI+G+GPSG+ A Q +E G E+
Sbjct: 9 RIAILGAGPSGMAQLRAFQSAQEKGAEI 36
>pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant
Length = 456
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAGT 77
+AIVGSGPS AA L K A T
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADT 28
>pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQT|B Chain B, A Covalent Modification Of Nadp+ Revealed By The Atomic
Resolution Structure Of Fpra, A Mycobacterium
Tuberculosis Oxidoreductase
pdb|1LQU|A Chain A, Mycobacterium Tuberculosis Fpra In Complex With Nadph
pdb|1LQU|B Chain B, Mycobacterium Tuberculosis Fpra In Complex With Nadph
Length = 456
Score = 26.9 bits (58), Expect = 3.0, Method: Composition-based stats.
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAGT 77
+AIVGSGPS AA L K A T
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADT 28
>pdb|4I44|A Chain A, Aer2 Poly-hamp Domains: V33g Hamp1 Inverted Signaling
Mutant
Length = 175
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 18 INEPAVTIKNIEC-----AIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAH 69
+ E ++ +E A + E GWI IP R + A + G + L AAH
Sbjct: 58 LREQRAELQQVESLEAGLAEMSRQHEAGWIDQTIPAERLEGRAARIAKGVNELVAAH 114
>pdb|4I3M|A Chain A, Aer2 Poly-hamp Domains: L44h Hamp1 Cw-lock Mutant
Length = 175
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 18 INEPAVTIKNIEC-----AIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAH 69
+ E ++ +E A + E GWI IP R + A + G + L AAH
Sbjct: 58 LREQRAELQQVESLEAGLAEMSRQHEAGWIDQTIPAERLEGRAARIAKGVNELVAAH 114
>pdb|3LNR|A Chain A, Crystal Structure Of Poly-Hamp Domains From The P.
Aeruginosa Soluble Receptor Aer2
Length = 175
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 18 INEPAVTIKNIEC-----AIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAH 69
+ E ++ +E A + E GWI IP R + A + G + L AAH
Sbjct: 58 LREQRAELQQVESLEAGLAEMSRQHEAGWIDQTIPAERLEGRAARIAKGVNELVAAH 114
>pdb|3AES|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AES|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 37 FEQGWIKPEI-PTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
Q W + T TGK+V I G G + AA KE G E++
Sbjct: 264 LRQPWWSASVDSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVV 308
>pdb|3AEK|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEK|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEQ|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|B Chain B, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AER|D Chain D, Structure Of The Light-independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 34 DHAFEQGWIKPEI-PTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
+ Q W + T TGK+V I G G + AA KE G E++
Sbjct: 261 ESTLRQPWWSASVDSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVV 308
>pdb|3AEU|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AEU|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 34 DHAFEQGWIKPEI-PTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
+ Q W + T TGK+V I G G + AA KE G E++
Sbjct: 261 ESTLRQPWWSASVDSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVV 308
>pdb|3AET|B Chain B, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
pdb|3AET|D Chain D, Structure Of The Light-Independent Protochlorophyllide
Reductase Catalyzing A Key Reduction For Greening In The
Dark
Length = 525
Score = 26.2 bits (56), Expect = 4.7, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Query: 34 DHAFEQGWIKPEI-PTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
+ Q W + T TGK+V I G G + AA KE G E++
Sbjct: 261 ESTLRQPWWSASVDSTYLTGKRVFIFGDGTHVIAAARIAAKEVGFEVV 308
>pdb|3OC4|A Chain A, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
pdb|3OC4|B Chain B, Crystal Structure Of A Pyridine Nucleotide-Disulfide
Family Oxidoreductase From The Enterococcus Faecalis
V583
Length = 452
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGT 77
+P L + VA++G+GP G A L K T
Sbjct: 141 VPLLENSQTVAVIGAGPIGXEAIDFLVKXKKT 172
>pdb|2FJA|A Chain A, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJA|C Chain C, Adenosine 5'-Phosphosulfate Reductase In Complex With
Substrate
pdb|2FJB|A Chain A, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJB|C Chain C, Adenosine-5'-Phosphosulfate Reductase Im Complex With
Products
pdb|2FJD|A Chain A, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJD|C Chain C, Adenosine-5-Phosphosulfate Reductase In Complex With
Sulfite (Covalent Adduct)
pdb|2FJE|A Chain A, Adenosine-5-Phosphosulfate Reductase Oxidized State
pdb|2FJE|C Chain C, Adenosine-5-Phosphosulfate Reductase Oxidized State
Length = 643
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 45 EIPTLRTGKKVAIVGSGPSGLGAAHQ 70
E+PT + I+G G SG GAA++
Sbjct: 15 EVPTEVVETDILIIGGGFSGCGAAYE 40
>pdb|1JNR|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNR|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|A Chain A, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
pdb|1JNZ|C Chain C, Structure Of Adenylylsulfate Reductase From The
Hyperthermophilic Archaeoglobus Fulgidus At 1.6
Resolution
Length = 643
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 45 EIPTLRTGKKVAIVGSGPSGLGAAHQ 70
E+PT + I+G G SG GAA++
Sbjct: 15 EVPTEVVETDILIIGGGFSGCGAAYE 40
>pdb|3I3L|A Chain A, Crystal Structure Of Cmls, A Flavin-Dependent Halogenase
Length = 591
Score = 25.4 bits (54), Expect = 7.9, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNK 73
T KVAI+G GP+G A L+K
Sbjct: 22 TRSKVAIIGGGPAGSVAGLTLHK 44
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 25.4 bits (54), Expect = 8.3, Method: Composition-based stats.
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
Query: 17 GINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
G + A T I+ +I+ + ++ I T V +VG+G +GL AA++++K
Sbjct: 6 GYDLNAFTFDPIKESIVSREMTRRYMTDMITYAET--DVVVVGAGSAGLSAAYEISKNPN 63
Query: 77 TEL 79
++
Sbjct: 64 VQV 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,599,660
Number of Sequences: 62578
Number of extensions: 94919
Number of successful extensions: 527
Number of sequences better than 100.0: 78
Number of HSP's better than 100.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 85
length of query: 81
length of database: 14,973,337
effective HSP length: 50
effective length of query: 31
effective length of database: 11,844,437
effective search space: 367177547
effective search space used: 367177547
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)