BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11001
(81 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q03460|GLSN_MEDSA Glutamate synthase [NADH], amyloplastic OS=Medicago sativa PE=1 SV=1
Length = 2194
Score = 123 bits (309), Expect = 3e-28, Method: Composition-based stats.
Identities = 57/73 (78%), Positives = 62/73 (84%)
Query: 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
FTGRVCPAPCEG+CVLGI E V+IKNIECAIID AFE+GW+ P P RTGK+VAIVGS
Sbjct: 1773 FTGRVCPAPCEGSCVLGIIENPVSIKNIECAIIDKAFEEGWMIPRPPVKRTGKRVAIVGS 1832
Query: 61 GPSGLGAAHQLNK 73
GPSGL AA QLNK
Sbjct: 1833 GPSGLAAADQLNK 1845
>sp|Q9LV03|GLUT1_ARATH Glutamate synthase 1 [NADH], chloroplastic OS=Arabidopsis thaliana
GN=GLT1 PE=1 SV=2
Length = 2208
Score = 120 bits (302), Expect = 2e-27, Method: Composition-based stats.
Identities = 55/73 (75%), Positives = 62/73 (84%)
Query: 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
FTGRVCPAPCEG+CVLGI E V+IK+IECAIID AFE+GW+ P P RTGKKVAI+GS
Sbjct: 1794 FTGRVCPAPCEGSCVLGIIENPVSIKSIECAIIDKAFEEGWMVPRPPLKRTGKKVAIIGS 1853
Query: 61 GPSGLGAAHQLNK 73
GP+GL AA QLNK
Sbjct: 1854 GPAGLAAADQLNK 1866
>sp|Q0JKD0|GLT1_ORYSJ Glutamate synthase 1 [NADH], chloroplastic OS=Oryza sativa subsp.
japonica GN=Os01g0681900 PE=2 SV=1
Length = 2167
Score = 118 bits (296), Expect = 1e-26, Method: Composition-based stats.
Identities = 54/73 (73%), Positives = 61/73 (83%)
Query: 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
FTGRVCPAPCEG+CVLGI E V+IK+IECAIID FE+GW+ P P RTGKKVAI+GS
Sbjct: 1755 FTGRVCPAPCEGSCVLGIIENPVSIKSIECAIIDKGFEEGWMVPRPPLQRTGKKVAIIGS 1814
Query: 61 GPSGLGAAHQLNK 73
GP+GL AA QLNK
Sbjct: 1815 GPAGLAAADQLNK 1827
>sp|O34399|GLTB_BACSU Glutamate synthase [NADPH] small chain OS=Bacillus subtilis (strain
168) GN=gltB PE=2 SV=2
Length = 493
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
FTGRVCPAPCEG+C L I++PAV+IKNIE IID FE GWI+P IP RTGKKVAIVGS
Sbjct: 101 FTGRVCPAPCEGSCTLAISDPAVSIKNIERTIIDKGFENGWIQPRIPKKRTGKKVAIVGS 160
Query: 61 GPSGLGAAHQLNK 73
GP+GL +A QLN+
Sbjct: 161 GPAGLASADQLNQ 173
>sp|Q0DG35|GLT2_ORYSJ Glutamate synthase 2 [NADH], chloroplastic OS=Oryza sativa subsp.
japonica GN=Os05g0555600 PE=2 SV=2
Length = 2188
Score = 116 bits (291), Expect = 4e-26, Method: Composition-based stats.
Identities = 53/73 (72%), Positives = 61/73 (83%)
Query: 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
FTGRVCPAPCEG+CVLGI + V+IK+IECAIID FE+GW+ P P RTGK+VAIVGS
Sbjct: 1773 FTGRVCPAPCEGSCVLGIIDNPVSIKSIECAIIDKGFEEGWMVPRPPLRRTGKRVAIVGS 1832
Query: 61 GPSGLGAAHQLNK 73
GP+GL AA QLNK
Sbjct: 1833 GPAGLAAADQLNK 1845
>sp|Q9C102|GLT1_SCHPO Putative glutamate synthase [NADPH] OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=glt1 PE=2 SV=1
Length = 2111
Score = 110 bits (276), Expect = 2e-24, Method: Composition-based stats.
Identities = 50/73 (68%), Positives = 59/73 (80%)
Query: 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
FTGRVCPAPCEGAC LGI E V IK++E AIID A+E+GWI P P RTG++VAI+GS
Sbjct: 1704 FTGRVCPAPCEGACTLGIIESPVGIKSVERAIIDKAWEEGWIVPRPPAERTGRRVAIIGS 1763
Query: 61 GPSGLGAAHQLNK 73
GP+GL AA QLN+
Sbjct: 1764 GPAGLAAADQLNR 1776
>sp|Q12680|GLT1_YEAST Glutamate synthase [NADH] OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=GLT1 PE=1 SV=2
Length = 2145
Score = 105 bits (261), Expect = 1e-22, Method: Composition-based stats.
Identities = 47/77 (61%), Positives = 57/77 (74%)
Query: 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
FTGRVCPAPCEGAC LGI E V IK++E IID+AF++GWIKP P+ RTG V ++GS
Sbjct: 1731 FTGRVCPAPCEGACTLGIIEDPVGIKSVERIIIDNAFKEGWIKPCPPSTRTGFTVGVIGS 1790
Query: 61 GPSGLGAAHQLNKEAGT 77
GP+GL A LN+ T
Sbjct: 1791 GPAGLACADMLNRAGHT 1807
>sp|P96219|GLTD_MYCTU Glutamate synthase [NADPH] small chain OS=Mycobacterium
tuberculosis GN=gltD PE=3 SV=1
Length = 488
Score = 104 bits (260), Expect = 1e-22, Method: Composition-based stats.
Identities = 48/77 (62%), Positives = 58/77 (75%)
Query: 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
FTGR+CPAPCE ACVLGIN+ VTIK IE IID AF++GW++P P TG+ VA+VGS
Sbjct: 93 FTGRLCPAPCEPACVLGINQDPVTIKQIELEIIDKAFDEGWVQPRPPRKLTGQTVAVVGS 152
Query: 61 GPSGLGAAHQLNKEAGT 77
GP+GL AA QL + T
Sbjct: 153 GPAGLAAAQQLTRAGHT 169
>sp|P09832|GLTD_ECOLI Glutamate synthase [NADPH] small chain OS=Escherichia coli (strain
K12) GN=gltD PE=1 SV=3
Length = 472
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 4/74 (5%)
Query: 3 GRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLR-TGKKVAIVG 59
GRVCP CEG+C L AVTI NIE I D AFE GW +P++ ++ TGKKVAI+G
Sbjct: 95 GRVCPQDRLCEGSCTLNDEFGAVTIGNIERYINDKAFEMGW-RPDMSGVKQTGKKVAIIG 153
Query: 60 SGPSGLGAAHQLNK 73
+GP+GL A L +
Sbjct: 154 AGPAGLACADVLTR 167
>sp|P37127|AEGA_ECOLI Protein AegA OS=Escherichia coli (strain K12) GN=aegA PE=3 SV=2
Length = 659
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 4/76 (5%)
Query: 1 FTGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTL-RTGKKVAI 57
TGRVCP CEGAC + AVTI NIE I D A +GW +P++ + + K+VAI
Sbjct: 274 ITGRVCPQDRLCEGACTIRDEHGAVTIGNIERYISDQALAKGW-RPDLSHVTKVDKRVAI 332
Query: 58 VGSGPSGLGAAHQLNK 73
+G+GP+GL A L +
Sbjct: 333 IGAGPAGLACADVLTR 348
>sp|Q46820|YGFT_ECOLI Uncharacterized protein YgfT OS=Escherichia coli (strain K12)
GN=ygfT PE=3 SV=2
Length = 639
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/74 (44%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 3 GRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIP-TLRTGKKVAIVG 59
GRVCP CEGAC L + AV+I N+E I D A GW +P++ + +KVA++G
Sbjct: 259 GRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGW-RPDVSKVVPRSEKVAVIG 317
Query: 60 SGPSGLGAAHQLNK 73
+GP+GLG A L +
Sbjct: 318 AGPAGLGCADILAR 331
>sp|Q8U195|SUDHA_PYRFU Sulfide dehydrogenase subunit alpha OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=sudA PE=1
SV=1
Length = 474
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/79 (45%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 2 TGRVCPA--PCEGACVLGINEPAVTIKNIECAIIDHAFEQG----WIKPEIPTL-RTGKK 54
TGRVCP CEGACV+G + I +E + D+A E G + EI + R GKK
Sbjct: 97 TGRVCPQEEQCEGACVVGKVGDPINIGKLERFVADYAREHGIDDELLLEEIKGIKRNGKK 156
Query: 55 VAIVGSGPSGLGAAHQLNK 73
VAI+G+GP+GL A L K
Sbjct: 157 VAIIGAGPAGLTCAADLAK 175
>sp|Q05756|GLTD_AZOBR Glutamate synthase [NADPH] small chain OS=Azospirillum brasilense
GN=gltD PE=1 SV=3
Length = 482
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 3 GRVCPAP--CEGACVL-GINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIV 58
GR+CP CEG CV+ AVTI ++E I D A++QGW+KP P+ G V ++
Sbjct: 96 GRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGVI 154
>sp|O08340|GLTD_RHOSH Putative glutamate synthase [NADPH] small chain OS=Rhodobacter
sphaeroides GN=gltD PE=3 SV=1
Length = 413
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 3 GRVCPAP--CEGACVLGIN-EPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVG 59
GR+CP CEG CV+ + VTI +E I D A+E GW+ P P + V I+G
Sbjct: 34 GRICPQDRLCEGNCVIEQSGHGTVTIGAVEKYITDTAWENGWVVPGKPAYERSESVGIIG 93
Query: 60 S 60
+
Sbjct: 94 A 94
>sp|Q8ZNL8|PRET_SALTY NAD-dependent dihydropyrimidine dehydrogenase subunit PreT
OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC
700720) GN=preT PE=3 SV=1
Length = 413
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 3 GRVCPAP--CEGACVL-GINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVG 59
RVCP C+ C GI++P + I ++ I D +Q ++ P +T KVAI+G
Sbjct: 74 ARVCPTEKLCQRGCTRSGIDKP-IDIARLQRFITDFE-QQTAMQIYQPGSKTRGKVAIIG 131
Query: 60 SGPSGLGAAHQLN 72
+GP+GL A+ L
Sbjct: 132 AGPAGLQASVTLT 144
>sp|Q8Z5A6|PRET_SALTI NAD-dependent dihydropyrimidine dehydrogenase subunit PreT homolog
OS=Salmonella typhi GN=preT PE=3 SV=1
Length = 413
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 5/73 (6%)
Query: 3 GRVCPAP--CEGACVL-GINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVG 59
RVCP C+ C GI++P + I ++ I D +Q ++ P +T KVAI+G
Sbjct: 74 ARVCPTEKLCQRGCTRSGIDKP-IDIARLQRFITDFE-QQTAMQIYQPGSKTRGKVAIIG 131
Query: 60 SGPSGLGAAHQLN 72
+GP+GL A+ L
Sbjct: 132 AGPAGLQASVTLT 144
>sp|P76440|PRET_ECOLI NAD-dependent dihydropyrimidine dehydrogenase sunbunit PreT
OS=Escherichia coli (strain K12) GN=preT PE=1 SV=1
Length = 412
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 3 GRVCPAP--CEGACVL-GINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVG 59
RVCP C+ C G++ P + I ++ + D +Q ++ P +T KVAI+G
Sbjct: 74 ARVCPTEKLCQSGCTRAGVDAP-IDIGRLQRFVTDFE-QQTGMEIYQPGTKTLGKVAIIG 131
Query: 60 SGPSGLGAAHQLNKE 74
+GP+GL A+ L +
Sbjct: 132 AGPAGLQASVTLTNQ 146
>sp|Q8X645|PRET_ECO57 NAD-dependent dihydropyrimidine dehydrogenase subunit PreT
OS=Escherichia coli O157:H7 GN=preT PE=3 SV=1
Length = 412
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 5/75 (6%)
Query: 3 GRVCPAP--CEGACVL-GINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVG 59
RVCP C+ C G++ P + I ++ + D +Q ++ P +T KVAI+G
Sbjct: 74 ARVCPTEKLCQSGCTRAGVDAP-IDIGRLQRFVTDFE-QQTGMEIYQPGTKTLGKVAIIG 131
Query: 60 SGPSGLGAAHQLNKE 74
+GP+GL A+ L +
Sbjct: 132 AGPAGLQASVTLTNQ 146
>sp|O60341|KDM1A_HUMAN Lysine-specific histone demethylase 1A OS=Homo sapiens GN=KDM1A
PE=1 SV=2
Length = 852
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 20/30 (66%), Positives = 23/30 (76%), Gaps = 2/30 (6%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
IKP +PT +TGK V I+GSG SGL AA QL
Sbjct: 270 IKP-LPTKKTGK-VIIIGSGVSGLAAARQL 297
>sp|Q9FLK4|GSXL8_ARATH Flavin-containing monooxygenase FMO GS-OX-like 8 OS=Arabidopsis
thaliana GN=At5g61290 PE=2 SV=1
Length = 461
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 47 PTLRTGKKVAIVGSGPSGLGAAHQLNKEA 75
P K V ++G+GPSGL +A +L KE
Sbjct: 8 PIKSQSKTVCVIGAGPSGLVSARELKKEG 36
>sp|Q6ZQ88|KDM1A_MOUSE Lysine-specific histone demethylase 1A OS=Mus musculus GN=Kdm1a
PE=1 SV=2
Length = 853
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 19/30 (63%), Positives = 22/30 (73%), Gaps = 2/30 (6%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
IKP +P +TGK V I+GSG SGL AA QL
Sbjct: 271 IKP-LPIKKTGK-VIIIGSGVSGLAAARQL 298
>sp|Q9FF12|GSXL9_ARATH Flavin-containing monooxygenase FMO GS-OX-like 9 OS=Arabidopsis
thaliana GN=At5g07800 PE=2 SV=1
Length = 460
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEA 75
KKV ++G+GP+GL +A +L KE
Sbjct: 14 KKVCVIGAGPAGLVSARELRKEG 36
>sp|Q9WZP4|THI4_THEMA Putative thiazole biosynthetic enzyme OS=Thermotoga maritima
(strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
GN=TM_0787 PE=3 SV=1
Length = 250
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 14/19 (73%), Positives = 17/19 (89%)
Query: 55 VAIVGSGPSGLGAAHQLNK 73
VAIVG+GPSGL AA++L K
Sbjct: 28 VAIVGAGPSGLTAAYELAK 46
>sp|Q9VW97|LSDA_DROME Possible lysine-specific histone demethylase 1 OS=Drosophila
melanogaster GN=Su(var)3-3 PE=1 SV=1
Length = 890
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNK 73
+KP IP + GK V ++G+G SGL AHQL +
Sbjct: 256 LKP-IPAKKLGK-VIVIGAGISGLAVAHQLQQ 285
>sp|P81383|OXLA_OPHHA L-amino-acid oxidase OS=Ophiophagus hannah PE=1 SV=3
Length = 491
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80
KK+ IVG+G SGL AA +L +EAG E++
Sbjct: 52 KKIVIVGAGISGLTAA-KLFREAGHEVV 78
>sp|Q5ZM35|TWF2_CHICK Twinfilin-2 OS=Gallus gallus GN=TWF2 PE=1 SV=1
Length = 349
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 35 HAFEQGWIKPEIPTLRTGKKVAIVGSGPSG 64
HAF+Q + KP+ P + G+K I G G +G
Sbjct: 317 HAFKQAFAKPKGPVGKRGQKRLIKGPGENG 346
>sp|Q640W2|TWF2B_XENLA Twinfilin-2-B OS=Xenopus laevis GN=twf2-b PE=2 SV=1
Length = 349
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 35 HAFEQGWIKPEIPTLRTGKKVAIVGSGPSG 64
HAF+Q + KP+ P + G+K I G G +G
Sbjct: 317 HAFKQAFAKPKGPAGKRGQKRLIKGPGENG 346
>sp|Q7ZXP0|TWF2A_XENLA Twinfilin-2-A OS=Xenopus laevis GN=twf2-a PE=2 SV=1
Length = 349
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 35 HAFEQGWIKPEIPTLRTGKKVAIVGSGPSG 64
HAF+Q + KP+ P + G+K I G G +G
Sbjct: 317 HAFKQAFAKPKGPAGKRGQKRLIKGPGENG 346
>sp|Q45604|YYCR_BACSU Uncharacterized zinc-type alcohol dehydrogenase-like protein YycR
OS=Bacillus subtilis (strain 168) GN=yycR PE=3 SV=1
Length = 408
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 26 KNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQ 70
K ++ ++ F G+ ++TG V I G+GP GL AAH
Sbjct: 175 KILDLTMLSDIFPTGFHGAYTAGVQTGSTVYIAGAGPVGLAAAHS 219
>sp|Q9SXE1|GSOX3_ARATH Flavin-containing monooxygenase FMO GS-OX3 OS=Arabidopsis
thaliana GN=FMOGS-OX3 PE=2 SV=1
Length = 462
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
T K VA++G+GP+GL + +L +E + ++
Sbjct: 9 TSKHVAVIGAGPAGLITSRELRREGHSVVV 38
>sp|Q9CAE3|LDL3_ARATH Lysine-specific histone demethylase 1 homolog 3 OS=Arabidopsis
thaliana GN=FLD PE=1 SV=1
Length = 789
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
IK + P + V IVG+G SGL AA QL
Sbjct: 174 IKDKFPAQSSKSSVIIVGAGLSGLAAARQL 203
>sp|B4SHE6|MURD_PELPB UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Pelodictyon
phaeoclathratiforme (strain DSM 5477 / BU-1) GN=murD
PE=3 SV=1
Length = 464
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
GK+V+++G+G SG+ AA L ++ T +
Sbjct: 5 GKRVSVIGAGKSGIAAAQLLARKGATVFV 33
>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial
OS=Spinacia oleracea GN=POX2 PE=1 SV=1
Length = 531
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 18/21 (85%)
Query: 51 TGKKVAIVGSGPSGLGAAHQL 71
+ K+VA+VG+G SGL AA++L
Sbjct: 41 SAKRVAVVGAGVSGLAAAYKL 61
>sp|Q97FT3|CARB_CLOAB Carbamoyl-phosphate synthase large chain OS=Clostridium
acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 /
LMG 5710 / VKM B-1787) GN=carB PE=3 SV=1
Length = 1065
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81
+P +T KKV I+GSGP+ +G A + + +GT+ K
Sbjct: 1 MPLDKTIKKVLIIGSGPNNIGQAAEFDY-SGTQACK 35
>sp|Q9HFE4|FMO1_SCHPO Thiol-specific monooxygenase OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=fmo1 PE=1 SV=1
Length = 447
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNKE 74
+PT+R K+AI+G+GPSGL A L E
Sbjct: 3 LPTIR---KIAIIGAGPSGLVTAKALLAE 28
>sp|P86810|OXLA_SIGCA L-amino-acid oxidase OS=Siganus canaliculatus PE=1 SV=2
Length = 527
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 26 KNIECAIIDHAFEQ--GWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
KN+ + D+ ++Q ++ +P + T V IVG+G +GL AA +L ++AG
Sbjct: 32 KNLAACLRDNDYDQLLQTVQDGLPHINTSNHVVIVGAGVAGLTAA-KLLQDAG 83
>sp|Q9C8U0|GSXL5_ARATH Flavin-containing monooxygenase FMO GS-OX-like 5 OS=Arabidopsis
thaliana GN=At1g63370 PE=2 SV=2
Length = 450
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAGTELI 80
VA++G+GP+GL AA +L +E + ++
Sbjct: 13 VAVIGAGPAGLVAARELRREGHSVVV 38
>sp|Q9SXD5|GSXL3_ARATH Flavin-containing monooxygenase FMO GS-OX-like 3 OS=Arabidopsis
thaliana GN=At1g62620 PE=2 SV=2
Length = 450
Score = 29.6 bits (65), Expect = 5.7, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAGTELI 80
VA++G+GP+GL AA +L +E + ++
Sbjct: 13 VAVIGAGPAGLVAARELRREGHSVVV 38
>sp|P55624|Y4QC_RHISN Uncharacterized protein y4qC OS=Rhizobium sp. (strain NGR234)
GN=NGR_a01950 PE=4 SV=1
Length = 583
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 24 TIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTEL 79
T+ +I D + G+ P + +LR GK++A+VG G G AA +L + T L
Sbjct: 300 TVPSIVPVFRDGEIDIGYRVPSVASLR-GKRIAVVGLGALGSPAAVELARNGCTSL 354
>sp|Q8FL00|TILS_ECOL6 tRNA(Ile)-lysidine synthase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tilS PE=3 SV=1
Length = 437
Score = 29.3 bits (64), Expect = 6.7, Method: Composition-based stats.
Identities = 12/23 (52%), Positives = 19/23 (82%)
Query: 59 GSGPSGLGAAHQLNKEAGTELIK 81
GSGP+GL A ++++ AGT+LI+
Sbjct: 131 GSGPAGLSAMAEVSEFAGTQLIR 153
>sp|A7Z7B9|ILVC_BACA2 Ketol-acid reductoisomerase OS=Bacillus amyloliquefaciens (strain
FZB42) GN=ilvC PE=3 SV=1
Length = 342
Score = 29.3 bits (64), Expect = 8.1, Method: Composition-based stats.
Identities = 17/30 (56%), Positives = 21/30 (70%), Gaps = 3/30 (10%)
Query: 52 GKKVAIVGSGPSGLGAAHQLN-KEAGTELI 80
GKKVAI+G G G AH LN KE+G ++I
Sbjct: 17 GKKVAIIGYGSQ--GHAHALNLKESGIDVI 44
>sp|E3JV98|THI4_PUCGT Thiamine thiazole synthase OS=Puccinia graminis f. sp. tritici
(strain CRL 75-36-700-3 / race SCCL) GN=PGTG_01304 PE=3
SV=1
Length = 336
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 20 EPAVTIKNIECA-IIDHAFEQGWIKPEIPTL--RTGKKVAIVGSGPSGLGAAHQLNK 73
EPAV ++ I+ A I +H ++ ++ + R V IVG+G +GL A+ L K
Sbjct: 43 EPAVNLEPIKFAPIKEHQVQRAMVRRYFQDMEERAISDVIIVGAGSAGLSCAYALGK 99
>sp|P56601|PPOX_MYXXA Protoporphyrinogen oxidase OS=Myxococcus xanthus GN=hemY PE=1
SV=1
Length = 471
Score = 28.9 bits (63), Expect = 9.0, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
TG VA+VG G SGL AH L + GT+ +
Sbjct: 8 TGMNVAVVGGGISGLAVAHHL-RSRGTDAV 36
>sp|A9KLU2|MURD_CLOPH UDP-N-acetylmuramoylalanine--D-glutamate ligase OS=Clostridium
phytofermentans (strain ATCC 700394 / DSM 18823 / ISDg)
GN=murD PE=3 SV=1
Length = 454
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
GKKV +VG+G SG+ A L++E ++
Sbjct: 5 GKKVLVVGAGKSGISAIELLSQEGAQTIL 33
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.138 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,197,037
Number of Sequences: 539616
Number of extensions: 1236411
Number of successful extensions: 6163
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 6114
Number of HSP's gapped (non-prelim): 67
length of query: 81
length of database: 191,569,459
effective HSP length: 52
effective length of query: 29
effective length of database: 163,509,427
effective search space: 4741773383
effective search space used: 4741773383
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)