Query psy11001
Match_columns 81
No_of_seqs 117 out of 2005
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 15:40:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK12810 gltD glutamate syntha 99.9 3.9E-22 8.5E-27 145.8 8.4 80 1-80 92-171 (471)
2 PRK12831 putative oxidoreducta 99.9 5.3E-22 1.2E-26 145.2 8.4 79 1-80 88-168 (464)
3 TIGR03315 Se_ygfK putative sel 99.9 1.2E-21 2.7E-26 153.7 8.1 80 1-80 485-565 (1012)
4 PRK12769 putative oxidoreducta 99.9 2.3E-21 4.9E-26 146.5 8.3 80 1-80 274-355 (654)
5 TIGR01318 gltD_gamma_fam gluta 99.8 3.3E-21 7.1E-26 141.1 8.5 80 1-80 88-169 (467)
6 PRK09853 putative selenate red 99.8 2.6E-21 5.6E-26 151.8 8.0 80 1-80 487-567 (1019)
7 PRK12809 putative oxidoreducta 99.8 5.9E-21 1.3E-25 144.1 8.6 80 1-80 257-338 (639)
8 TIGR01317 GOGAT_sm_gam glutama 99.8 5.1E-21 1.1E-25 140.7 8.1 80 1-80 92-171 (485)
9 PRK12775 putative trifunctiona 99.8 5.3E-21 1.1E-25 150.3 8.1 79 1-81 379-459 (1006)
10 TIGR01316 gltA glutamate synth 99.8 1.6E-20 3.4E-25 136.8 8.3 80 1-80 76-161 (449)
11 PRK12814 putative NADPH-depend 99.8 4.9E-20 1.1E-24 139.5 8.6 80 1-80 142-221 (652)
12 PRK06567 putative bifunctional 99.8 4E-20 8.7E-25 144.7 7.3 79 1-81 318-412 (1028)
13 PRK12779 putative bifunctional 99.8 5.1E-20 1.1E-24 144.1 7.8 79 1-81 248-335 (944)
14 PRK12778 putative bifunctional 99.8 2.1E-19 4.5E-24 137.5 8.3 80 1-80 377-459 (752)
15 PRK12771 putative glutamate sy 99.8 2.5E-19 5.4E-24 133.4 8.3 79 1-80 87-165 (564)
16 PRK11749 dihydropyrimidine deh 99.8 3.5E-19 7.6E-24 129.6 8.4 79 1-80 88-168 (457)
17 KOG0399|consensus 99.8 1.1E-19 2.4E-24 143.2 5.6 80 1-80 1734-1813(2142)
18 PRK13984 putative oxidoreducta 99.8 7.8E-19 1.7E-23 131.4 7.7 80 1-80 231-311 (604)
19 COG0493 GltD NADPH-dependent g 99.8 1.4E-18 3.1E-23 127.7 6.2 80 1-80 70-151 (457)
20 PF14691 Fer4_20: Dihydroprymi 99.1 3.2E-11 6.9E-16 74.4 1.1 40 1-41 70-111 (111)
21 COG1635 THI4 Ribulose 1,5-bisp 98.6 9.3E-08 2E-12 65.7 4.3 51 23-80 8-58 (262)
22 KOG0029|consensus 98.5 9.2E-08 2E-12 71.5 4.5 33 48-80 11-43 (501)
23 PF01494 FAD_binding_3: FAD bi 98.5 8.2E-08 1.8E-12 65.9 3.4 28 53-80 2-29 (356)
24 PLN02487 zeta-carotene desatur 98.5 2.5E-07 5.3E-12 70.1 6.0 53 27-80 47-103 (569)
25 PRK04176 ribulose-1,5-biphosph 98.5 2.4E-07 5.2E-12 63.8 5.5 47 27-80 7-53 (257)
26 PF13450 NAD_binding_8: NAD(P) 98.5 1.3E-07 2.9E-12 53.3 3.2 24 57-80 1-24 (68)
27 TIGR02023 BchP-ChlP geranylger 98.5 1.7E-07 3.8E-12 66.9 4.1 28 53-80 1-28 (388)
28 COG0644 FixC Dehydrogenases (f 98.5 1.8E-07 3.9E-12 67.3 3.9 29 52-80 3-31 (396)
29 PF01946 Thi4: Thi4 family; PD 98.5 1.6E-07 3.6E-12 64.1 3.3 30 51-80 16-45 (230)
30 PLN02852 ferredoxin-NADP+ redu 98.4 2.9E-07 6.3E-12 68.7 4.9 33 49-81 23-57 (491)
31 PLN00093 geranylgeranyl diphos 98.4 3.2E-07 6.9E-12 67.6 5.0 32 49-80 36-67 (450)
32 PRK07364 2-octaprenyl-6-methox 98.4 2.8E-07 6.1E-12 65.8 4.4 29 52-80 18-46 (415)
33 PRK11883 protoporphyrinogen ox 98.4 2.7E-07 5.9E-12 66.2 4.1 28 53-80 1-30 (451)
34 PRK07233 hypothetical protein; 98.4 2.7E-07 5.8E-12 65.7 4.0 27 54-80 1-27 (434)
35 TIGR00292 thiazole biosynthesi 98.4 5.4E-07 1.2E-11 62.1 5.4 30 51-80 20-49 (254)
36 TIGR02032 GG-red-SF geranylger 98.4 3.3E-07 7.1E-12 61.9 4.0 28 53-80 1-28 (295)
37 PRK10262 thioredoxin reductase 98.4 4.1E-07 9E-12 63.4 4.5 30 51-80 5-34 (321)
38 PRK07045 putative monooxygenas 98.4 3.4E-07 7.4E-12 65.1 4.0 29 52-80 5-33 (388)
39 PRK06475 salicylate hydroxylas 98.4 4E-07 8.6E-12 65.2 4.3 29 52-80 2-30 (400)
40 PF01266 DAO: FAD dependent ox 98.4 3.5E-07 7.5E-12 62.8 3.9 27 54-80 1-27 (358)
41 PRK10157 putative oxidoreducta 98.4 4.1E-07 8.8E-12 66.2 4.3 29 52-80 5-33 (428)
42 COG1233 Phytoene dehydrogenase 98.4 3.5E-07 7.7E-12 67.7 4.0 29 52-80 3-31 (487)
43 PRK06847 hypothetical protein; 98.4 4.7E-07 1E-11 63.8 4.4 29 52-80 4-32 (375)
44 TIGR01292 TRX_reduct thioredox 98.4 4.8E-07 1E-11 61.4 4.2 28 53-80 1-28 (300)
45 TIGR02028 ChlP geranylgeranyl 98.4 4.3E-07 9.2E-12 65.5 4.1 28 53-80 1-28 (398)
46 PRK07236 hypothetical protein; 98.4 5E-07 1.1E-11 64.4 4.3 29 52-80 6-34 (386)
47 PRK09126 hypothetical protein; 98.4 4.3E-07 9.4E-12 64.4 4.0 28 53-80 4-31 (392)
48 PRK10015 oxidoreductase; Provi 98.4 4.6E-07 1E-11 66.1 4.2 29 52-80 5-33 (429)
49 PRK08773 2-octaprenyl-3-methyl 98.4 4.4E-07 9.5E-12 64.6 3.9 30 51-80 5-34 (392)
50 PRK08849 2-octaprenyl-3-methyl 98.4 5.2E-07 1.1E-11 64.3 4.3 28 53-80 4-31 (384)
51 PRK06753 hypothetical protein; 98.4 4.9E-07 1.1E-11 63.7 4.0 27 54-80 2-28 (373)
52 PRK05714 2-octaprenyl-3-methyl 98.4 4.4E-07 9.4E-12 64.9 3.8 28 53-80 3-30 (405)
53 PRK07608 ubiquinone biosynthes 98.4 5.2E-07 1.1E-11 63.8 4.1 29 52-80 5-33 (388)
54 TIGR01988 Ubi-OHases Ubiquinon 98.4 4.3E-07 9.4E-12 63.8 3.6 27 54-80 1-27 (385)
55 PRK07208 hypothetical protein; 98.3 6E-07 1.3E-11 65.5 4.4 29 52-80 4-32 (479)
56 PRK08163 salicylate hydroxylas 98.3 6.4E-07 1.4E-11 63.6 4.3 29 52-80 4-32 (396)
57 PF07992 Pyr_redox_2: Pyridine 98.3 6E-07 1.3E-11 57.9 3.8 27 54-80 1-27 (201)
58 PF03486 HI0933_like: HI0933-l 98.3 4.8E-07 1E-11 66.2 3.7 28 53-80 1-28 (409)
59 PRK08020 ubiF 2-octaprenyl-3-m 98.3 5.2E-07 1.1E-11 64.1 3.8 30 51-80 4-33 (391)
60 PLN02172 flavin-containing mon 98.3 7.1E-07 1.5E-11 66.0 4.6 31 50-80 8-38 (461)
61 PRK08013 oxidoreductase; Provi 98.3 6.2E-07 1.3E-11 64.3 4.0 29 53-81 4-32 (400)
62 PLN02268 probable polyamine ox 98.3 6.1E-07 1.3E-11 64.8 4.0 28 53-80 1-28 (435)
63 TIGR02360 pbenz_hydroxyl 4-hyd 98.3 7E-07 1.5E-11 64.1 4.2 28 53-80 3-30 (390)
64 PRK05732 2-octaprenyl-6-methox 98.3 6.7E-07 1.5E-11 63.3 3.9 29 52-80 3-34 (395)
65 PRK15317 alkyl hydroperoxide r 98.3 1.5E-06 3.3E-11 64.6 5.9 30 51-80 210-239 (517)
66 TIGR01377 soxA_mon sarcosine o 98.3 8E-07 1.7E-11 62.6 4.0 28 53-80 1-28 (380)
67 PRK06126 hypothetical protein; 98.3 9.3E-07 2E-11 65.7 4.5 30 52-81 7-36 (545)
68 COG0654 UbiH 2-polyprenyl-6-me 98.3 9E-07 1.9E-11 63.4 4.2 30 52-81 2-31 (387)
69 TIGR03140 AhpF alkyl hydropero 98.3 9.5E-07 2.1E-11 65.7 4.5 31 50-80 210-240 (515)
70 TIGR01984 UbiH 2-polyprenyl-6- 98.3 6.5E-07 1.4E-11 63.2 3.5 27 54-80 1-28 (382)
71 PRK08243 4-hydroxybenzoate 3-m 98.3 8.8E-07 1.9E-11 63.3 4.2 28 53-80 3-30 (392)
72 PRK07588 hypothetical protein; 98.3 9.1E-07 2E-11 63.0 4.1 27 54-80 2-28 (391)
73 PRK06184 hypothetical protein; 98.3 9.7E-07 2.1E-11 65.1 4.3 29 52-80 3-31 (502)
74 COG0665 DadA Glycine/D-amino a 98.3 9.6E-07 2.1E-11 62.2 4.1 30 51-80 3-32 (387)
75 PLN02576 protoporphyrinogen ox 98.3 1.1E-06 2.4E-11 64.4 4.5 30 51-80 11-41 (496)
76 TIGR03143 AhpF_homolog putativ 98.3 1E-06 2.3E-11 66.1 4.5 29 52-80 4-32 (555)
77 PRK07494 2-octaprenyl-6-methox 98.3 9.1E-07 2E-11 62.8 3.9 29 52-80 7-35 (388)
78 COG0492 TrxB Thioredoxin reduc 98.3 9.8E-07 2.1E-11 62.4 4.0 29 52-80 3-32 (305)
79 PRK08850 2-octaprenyl-6-methox 98.3 9.7E-07 2.1E-11 63.3 4.0 30 52-81 4-33 (405)
80 PLN02463 lycopene beta cyclase 98.3 1.5E-06 3.3E-11 64.1 5.0 32 49-80 25-56 (447)
81 PRK08244 hypothetical protein; 98.3 1.1E-06 2.5E-11 64.5 4.2 28 53-80 3-30 (493)
82 PRK11259 solA N-methyltryptoph 98.3 1.1E-06 2.5E-11 61.8 4.0 29 52-80 3-31 (376)
83 PRK07538 hypothetical protein; 98.2 1.1E-06 2.5E-11 63.1 4.0 27 54-80 2-28 (413)
84 PRK06185 hypothetical protein; 98.2 1.3E-06 2.8E-11 62.3 4.2 29 52-80 6-34 (407)
85 TIGR02733 desat_CrtD C-3',4' d 98.2 1.3E-06 2.7E-11 64.2 4.2 28 53-80 2-29 (492)
86 PRK12409 D-amino acid dehydrog 98.2 1.3E-06 2.7E-11 62.6 4.1 28 53-80 2-29 (410)
87 PRK06617 2-octaprenyl-6-methox 98.2 1.1E-06 2.5E-11 62.5 3.8 29 53-81 2-30 (374)
88 TIGR00562 proto_IX_ox protopor 98.2 1.4E-06 3E-11 63.1 4.2 28 53-80 3-34 (462)
89 PRK06116 glutathione reductase 98.2 1.5E-06 3.3E-11 63.2 4.3 29 52-80 4-32 (450)
90 PRK05868 hypothetical protein; 98.2 1.5E-06 3.2E-11 62.1 4.1 28 53-80 2-29 (372)
91 PRK06416 dihydrolipoamide dehy 98.2 1.7E-06 3.6E-11 63.2 4.4 30 51-80 3-32 (462)
92 PRK07251 pyridine nucleotide-d 98.2 1.5E-06 3.2E-11 63.1 4.1 29 52-80 3-31 (438)
93 PLN02612 phytoene desaturase 98.2 3.4E-06 7.4E-11 63.6 6.2 33 48-80 89-121 (567)
94 TIGR01421 gluta_reduc_1 glutat 98.2 1.5E-06 3.3E-11 63.6 4.2 30 52-81 2-31 (450)
95 PRK08010 pyridine nucleotide-d 98.2 1.7E-06 3.6E-11 62.9 4.2 29 52-80 3-31 (441)
96 COG3349 Uncharacterized conser 98.2 1.4E-06 3.1E-11 65.0 3.9 28 53-80 1-28 (485)
97 TIGR01424 gluta_reduc_2 glutat 98.2 1.8E-06 3.9E-11 63.0 4.2 29 52-80 2-30 (446)
98 TIGR02731 phytoene_desat phyto 98.2 1.7E-06 3.6E-11 62.9 4.0 27 54-80 1-27 (453)
99 TIGR03364 HpnW_proposed FAD de 98.2 1.8E-06 4E-11 60.8 4.1 28 53-80 1-28 (365)
100 TIGR02734 crtI_fam phytoene de 98.2 1.4E-06 3E-11 64.1 3.5 26 55-80 1-26 (502)
101 PRK05335 tRNA (uracil-5-)-meth 98.2 2E-06 4.4E-11 63.5 4.1 28 53-80 3-30 (436)
102 TIGR01790 carotene-cycl lycope 98.2 1.9E-06 4.1E-11 61.1 3.8 28 54-81 1-28 (388)
103 PTZ00188 adrenodoxin reductase 98.2 2.5E-06 5.5E-11 64.0 4.6 31 50-80 37-68 (506)
104 PRK06834 hypothetical protein; 98.2 2.4E-06 5.2E-11 63.4 4.3 29 52-80 3-31 (488)
105 PRK07333 2-octaprenyl-6-methox 98.2 1.8E-06 3.8E-11 61.4 3.5 28 53-80 2-31 (403)
106 PRK05976 dihydrolipoamide dehy 98.2 2.4E-06 5.3E-11 62.6 4.3 30 51-80 3-32 (472)
107 PRK08132 FAD-dependent oxidore 98.2 2.9E-06 6.3E-11 63.2 4.6 30 51-80 22-51 (547)
108 PLN02985 squalene monooxygenas 98.2 3E-06 6.5E-11 63.4 4.7 32 49-80 40-71 (514)
109 PLN02697 lycopene epsilon cycl 98.2 3.6E-06 7.8E-11 63.4 5.0 30 51-80 107-136 (529)
110 PRK06115 dihydrolipoamide dehy 98.1 2.8E-06 6E-11 62.4 4.2 28 53-80 4-31 (466)
111 TIGR01350 lipoamide_DH dihydro 98.1 2.7E-06 5.8E-11 61.9 4.1 28 53-80 2-29 (461)
112 PRK05249 soluble pyridine nucl 98.1 2.7E-06 5.9E-11 62.0 4.0 29 52-80 5-33 (461)
113 PRK01747 mnmC bifunctional tRN 98.1 3.2E-06 7E-11 64.5 4.5 29 52-80 260-288 (662)
114 COG2081 Predicted flavoprotein 98.1 2.8E-06 6E-11 62.2 3.9 30 52-81 3-32 (408)
115 KOG1399|consensus 98.1 2.8E-06 6.1E-11 62.9 4.0 29 52-80 6-34 (448)
116 TIGR01989 COQ6 Ubiquinone bios 98.1 2.4E-06 5.3E-11 62.1 3.6 28 53-80 1-32 (437)
117 PRK07190 hypothetical protein; 98.1 3.5E-06 7.5E-11 62.5 4.4 29 52-80 5-33 (487)
118 PLN02927 antheraxanthin epoxid 98.1 3.3E-06 7.1E-11 65.2 4.4 31 50-80 79-109 (668)
119 PRK06370 mercuric reductase; V 98.1 3.2E-06 6.9E-11 61.9 4.1 29 52-80 5-33 (463)
120 PRK00711 D-amino acid dehydrog 98.1 3.2E-06 6.9E-11 60.4 3.8 27 54-80 2-28 (416)
121 PRK14694 putative mercuric red 98.1 4.1E-06 8.8E-11 61.5 4.4 31 50-80 4-34 (468)
122 TIGR02730 carot_isom carotene 98.1 3.5E-06 7.7E-11 62.1 4.1 28 53-80 1-28 (493)
123 TIGR03219 salicylate_mono sali 98.1 3.6E-06 7.8E-11 60.5 4.0 27 54-80 2-29 (414)
124 PRK11445 putative oxidoreducta 98.1 3.3E-06 7.2E-11 59.8 3.7 27 53-80 2-28 (351)
125 PRK12416 protoporphyrinogen ox 98.1 3.4E-06 7.4E-11 61.4 3.9 28 53-80 2-35 (463)
126 PRK07818 dihydrolipoamide dehy 98.1 4.1E-06 8.8E-11 61.4 4.2 29 52-80 4-32 (466)
127 PRK06183 mhpA 3-(3-hydroxyphen 98.1 4.4E-06 9.6E-11 62.2 4.4 31 50-80 8-38 (538)
128 PTZ00367 squalene epoxidase; P 98.1 7.8E-06 1.7E-10 62.0 5.7 32 50-81 31-62 (567)
129 PRK11728 hydroxyglutarate oxid 98.1 4.1E-06 9E-11 59.9 3.9 28 53-80 3-32 (393)
130 PRK12770 putative glutamate sy 98.1 6.4E-06 1.4E-10 58.4 4.7 31 50-80 16-46 (352)
131 TIGR02053 MerA mercuric reduct 98.1 4.7E-06 1E-10 60.9 4.1 28 53-80 1-28 (463)
132 TIGR01373 soxB sarcosine oxida 98.1 6.4E-06 1.4E-10 59.0 4.6 33 48-80 26-60 (407)
133 KOG2614|consensus 98.1 5.2E-06 1.1E-10 61.0 4.1 29 52-80 2-30 (420)
134 TIGR01372 soxA sarcosine oxida 98.0 5.9E-06 1.3E-10 65.8 4.6 30 51-80 162-191 (985)
135 PRK06292 dihydrolipoamide dehy 98.0 5.8E-06 1.3E-10 60.2 4.2 28 53-80 4-31 (460)
136 TIGR00137 gid_trmFO tRNA:m(5)U 98.0 5.6E-06 1.2E-10 61.2 4.0 27 54-80 2-28 (433)
137 PF00890 FAD_binding_2: FAD bi 98.0 5.9E-06 1.3E-10 59.2 4.0 27 54-80 1-27 (417)
138 PF01134 GIDA: Glucose inhibit 98.0 5.8E-06 1.3E-10 60.4 3.9 27 54-80 1-27 (392)
139 PF12831 FAD_oxidored: FAD dep 98.0 5.6E-06 1.2E-10 60.4 3.8 27 54-80 1-27 (428)
140 PRK05192 tRNA uridine 5-carbox 98.0 6.2E-06 1.4E-10 63.2 4.1 29 52-80 4-32 (618)
141 PLN02529 lysine-specific histo 98.0 8.4E-06 1.8E-10 63.6 4.9 31 50-80 158-188 (738)
142 COG1148 HdrA Heterodisulfide r 98.0 5.6E-06 1.2E-10 62.4 3.7 31 50-80 122-152 (622)
143 PRK13977 myosin-cross-reactive 98.0 9.8E-06 2.1E-10 61.7 5.0 32 49-80 19-54 (576)
144 COG1232 HemY Protoporphyrinoge 98.0 6.7E-06 1.4E-10 61.0 3.9 28 53-80 1-30 (444)
145 PTZ00052 thioredoxin reductase 98.0 6.9E-06 1.5E-10 61.1 4.0 29 52-80 5-33 (499)
146 COG1231 Monoamine oxidase [Ami 98.0 7.8E-06 1.7E-10 60.6 4.2 31 50-80 5-35 (450)
147 PF00070 Pyr_redox: Pyridine n 98.0 1E-05 2.2E-10 46.2 3.8 27 54-80 1-27 (80)
148 PLN02661 Putative thiazole syn 98.0 7E-06 1.5E-10 59.4 3.8 30 51-80 91-121 (357)
149 TIGR03329 Phn_aa_oxid putative 98.0 1E-05 2.3E-10 59.2 4.7 30 51-80 23-54 (460)
150 PRK06467 dihydrolipoamide dehy 98.0 9E-06 2E-10 59.9 4.4 29 52-80 4-32 (471)
151 PRK13369 glycerol-3-phosphate 98.0 9E-06 2E-10 60.3 4.3 29 52-80 6-34 (502)
152 PRK08274 tricarballylate dehyd 98.0 8.7E-06 1.9E-10 59.5 4.2 29 52-80 4-32 (466)
153 PRK07573 sdhA succinate dehydr 98.0 1.4E-05 3.1E-10 61.2 5.4 30 51-80 34-63 (640)
154 PRK13748 putative mercuric red 98.0 9.4E-06 2E-10 60.5 4.3 29 52-80 98-126 (561)
155 PRK08294 phenol 2-monooxygenas 98.0 8.6E-06 1.9E-10 62.3 4.1 29 52-80 32-61 (634)
156 TIGR02732 zeta_caro_desat caro 98.0 9.6E-06 2.1E-10 59.9 4.0 27 54-80 1-27 (474)
157 PRK11101 glpA sn-glycerol-3-ph 98.0 1E-05 2.3E-10 60.7 4.3 29 52-80 6-34 (546)
158 PLN02328 lysine-specific histo 98.0 1.3E-05 2.9E-10 63.0 4.9 31 50-80 236-266 (808)
159 PRK12266 glpD glycerol-3-phosp 98.0 1.1E-05 2.4E-10 60.0 4.3 29 52-80 6-34 (508)
160 TIGR00031 UDP-GALP_mutase UDP- 97.9 1.1E-05 2.5E-10 58.5 4.0 28 53-80 2-29 (377)
161 PRK06327 dihydrolipoamide dehy 97.9 1.3E-05 2.9E-10 59.0 4.1 29 52-80 4-32 (475)
162 PRK06996 hypothetical protein; 97.9 1.2E-05 2.6E-10 57.6 3.8 31 50-80 9-43 (398)
163 PRK08401 L-aspartate oxidase; 97.9 1.3E-05 2.9E-10 59.0 4.0 28 53-80 2-29 (466)
164 PF05834 Lycopene_cycl: Lycope 97.9 1.1E-05 2.3E-10 57.9 3.4 27 54-80 1-29 (374)
165 PF00743 FMO-like: Flavin-bind 97.9 1.1E-05 2.4E-10 60.7 3.5 28 53-80 2-29 (531)
166 TIGR01813 flavo_cyto_c flavocy 97.9 1.7E-05 3.6E-10 57.5 3.9 27 54-80 1-28 (439)
167 PRK07121 hypothetical protein; 97.9 2.7E-05 5.9E-10 57.5 5.0 30 51-80 19-48 (492)
168 PLN02464 glycerol-3-phosphate 97.9 1.8E-05 3.9E-10 60.6 4.1 31 51-81 70-100 (627)
169 PRK09754 phenylpropionate diox 97.9 1.9E-05 4.1E-10 56.7 4.1 26 52-77 3-28 (396)
170 PRK06481 fumarate reductase fl 97.8 2.9E-05 6.4E-10 57.8 5.0 30 51-80 60-89 (506)
171 PRK08255 salicylyl-CoA 5-hydro 97.8 1.7E-05 3.7E-10 61.7 3.8 27 54-80 2-30 (765)
172 COG3380 Predicted NAD/FAD-depe 97.8 1.9E-05 4.1E-10 56.0 3.6 28 54-81 3-30 (331)
173 PLN02507 glutathione reductase 97.8 2.4E-05 5.3E-10 58.2 4.3 31 50-80 23-53 (499)
174 PLN02568 polyamine oxidase 97.8 2.4E-05 5.2E-10 59.0 4.2 29 52-80 5-38 (539)
175 PRK12842 putative succinate de 97.8 2.7E-05 5.9E-10 58.7 4.5 29 52-80 9-37 (574)
176 PRK06912 acoL dihydrolipoamide 97.8 2.4E-05 5.2E-10 57.3 4.0 27 54-80 2-28 (458)
177 PLN02676 polyamine oxidase 97.8 3E-05 6.5E-10 57.7 4.5 30 51-80 25-55 (487)
178 PRK08641 sdhA succinate dehydr 97.8 2.6E-05 5.6E-10 59.2 4.2 28 53-80 4-31 (589)
179 PTZ00058 glutathione reductase 97.8 2.9E-05 6.2E-10 58.9 4.3 30 51-80 47-76 (561)
180 TIGR01789 lycopene_cycl lycope 97.8 2.5E-05 5.4E-10 56.2 3.7 27 54-80 1-29 (370)
181 COG2072 TrkA Predicted flavopr 97.8 3.2E-05 6.9E-10 57.0 4.4 30 51-80 7-37 (443)
182 TIGR01812 sdhA_frdA_Gneg succi 97.8 2.6E-05 5.6E-10 58.6 3.9 27 54-80 1-27 (566)
183 PLN02546 glutathione reductase 97.8 3.7E-05 8.1E-10 58.2 4.6 30 51-80 78-107 (558)
184 PRK14727 putative mercuric red 97.7 4.7E-05 1E-09 56.2 4.5 30 51-80 15-44 (479)
185 PRK07803 sdhA succinate dehydr 97.7 4.1E-05 8.9E-10 58.5 4.0 29 52-80 8-36 (626)
186 PRK12837 3-ketosteroid-delta-1 97.7 4.5E-05 9.7E-10 56.9 4.1 28 52-80 7-34 (513)
187 PRK07057 sdhA succinate dehydr 97.7 5E-05 1.1E-09 57.7 4.4 30 51-80 11-40 (591)
188 PLN00128 Succinate dehydrogena 97.7 4.8E-05 1E-09 58.4 4.3 29 52-80 50-78 (635)
189 PRK07804 L-aspartate oxidase; 97.7 6.5E-05 1.4E-09 56.5 4.9 30 51-80 15-44 (541)
190 TIGR01438 TGR thioredoxin and 97.7 5.1E-05 1.1E-09 56.3 4.2 29 52-80 2-30 (484)
191 PRK12834 putative FAD-binding 97.7 4.7E-05 1E-09 57.1 4.0 29 52-80 4-32 (549)
192 PRK09078 sdhA succinate dehydr 97.7 5.9E-05 1.3E-09 57.4 4.5 30 51-80 11-40 (598)
193 PRK08958 sdhA succinate dehydr 97.7 5.6E-05 1.2E-09 57.4 4.4 29 52-80 7-35 (588)
194 PF00732 GMC_oxred_N: GMC oxid 97.7 4E-05 8.7E-10 52.6 3.1 28 53-80 1-29 (296)
195 PRK06452 sdhA succinate dehydr 97.7 6.5E-05 1.4E-09 56.8 4.3 29 52-80 5-33 (566)
196 PRK12839 hypothetical protein; 97.7 8.2E-05 1.8E-09 56.4 4.9 31 50-80 6-36 (572)
197 PRK05329 anaerobic glycerol-3- 97.7 6.6E-05 1.4E-09 55.3 4.2 29 52-80 2-30 (422)
198 PRK07845 flavoprotein disulfid 97.7 6.2E-05 1.3E-09 55.4 4.0 28 53-80 2-29 (466)
199 PLN03000 amine oxidase 97.7 7.3E-05 1.6E-09 59.4 4.6 31 50-80 182-212 (881)
200 TIGR02462 pyranose_ox pyranose 97.6 5.9E-05 1.3E-09 57.2 3.9 28 53-80 1-28 (544)
201 COG2907 Predicted NAD/FAD-bind 97.6 4.3E-05 9.4E-10 55.8 3.0 30 50-80 6-35 (447)
202 PRK12835 3-ketosteroid-delta-1 97.6 7.4E-05 1.6E-09 56.7 4.3 29 52-80 11-39 (584)
203 PTZ00139 Succinate dehydrogena 97.6 6.4E-05 1.4E-09 57.4 4.0 30 51-80 28-57 (617)
204 COG3634 AhpF Alkyl hydroperoxi 97.6 5.4E-05 1.2E-09 55.6 3.4 30 49-78 208-237 (520)
205 PRK08626 fumarate reductase fl 97.6 6.5E-05 1.4E-09 57.8 4.0 29 52-80 5-33 (657)
206 TIGR01320 mal_quin_oxido malat 97.6 6.3E-05 1.4E-09 56.0 3.8 27 54-80 2-30 (483)
207 PRK12844 3-ketosteroid-delta-1 97.6 8.4E-05 1.8E-09 56.1 4.4 29 52-80 6-34 (557)
208 TIGR01423 trypano_reduc trypan 97.6 7.5E-05 1.6E-09 55.6 4.1 30 51-80 2-32 (486)
209 PRK06069 sdhA succinate dehydr 97.6 7.3E-05 1.6E-09 56.5 3.9 29 52-80 5-36 (577)
210 PRK06854 adenylylsulfate reduc 97.6 7.3E-05 1.6E-09 57.0 3.8 29 52-80 11-41 (608)
211 TIGR01811 sdhA_Bsu succinate d 97.6 6.9E-05 1.5E-09 57.1 3.6 26 55-80 1-26 (603)
212 PRK09564 coenzyme A disulfide 97.6 9.5E-05 2.1E-09 53.5 3.9 27 54-80 2-30 (444)
213 KOG1276|consensus 97.6 9.2E-05 2E-09 55.1 3.8 31 50-80 9-39 (491)
214 TIGR00551 nadB L-aspartate oxi 97.6 0.0001 2.3E-09 54.5 4.1 27 53-80 3-29 (488)
215 PRK07843 3-ketosteroid-delta-1 97.5 0.00012 2.6E-09 55.2 4.4 29 52-80 7-35 (557)
216 PRK05257 malate:quinone oxidor 97.5 0.00011 2.3E-09 54.9 4.0 30 51-80 4-35 (494)
217 PRK06134 putative FAD-binding 97.5 0.00014 3E-09 55.1 4.6 31 50-80 10-40 (581)
218 PRK08275 putative oxidoreducta 97.5 0.0001 2.2E-09 55.4 3.8 29 52-80 9-39 (554)
219 PRK05945 sdhA succinate dehydr 97.5 0.00011 2.3E-09 55.6 3.9 28 53-80 4-33 (575)
220 TIGR02061 aprA adenosine phosp 97.5 0.0001 2.2E-09 56.5 3.8 27 54-80 1-31 (614)
221 KOG0685|consensus 97.5 0.00011 2.5E-09 54.9 3.9 29 51-79 20-48 (498)
222 PF01210 NAD_Gly3P_dh_N: NAD-d 97.5 0.00011 2.4E-09 47.0 3.4 27 54-80 1-27 (157)
223 PTZ00153 lipoamide dehydrogena 97.5 0.00013 2.7E-09 56.5 4.3 29 52-80 116-144 (659)
224 KOG1800|consensus 97.5 0.00013 2.9E-09 53.7 3.9 31 50-80 18-50 (468)
225 PF04820 Trp_halogenase: Trypt 97.5 0.00012 2.6E-09 54.1 3.4 27 54-80 1-30 (454)
226 PRK13512 coenzyme A disulfide 97.4 0.00017 3.7E-09 52.6 4.0 28 53-80 2-31 (438)
227 PLN02815 L-aspartate oxidase 97.4 0.00017 3.8E-09 55.0 4.1 28 52-80 29-56 (594)
228 KOG2820|consensus 97.4 0.00014 2.9E-09 52.9 3.3 31 50-80 5-35 (399)
229 PRK01438 murD UDP-N-acetylmura 97.4 0.0002 4.3E-09 52.7 4.2 30 51-80 15-44 (480)
230 PRK06263 sdhA succinate dehydr 97.4 0.00017 3.7E-09 54.1 3.9 28 52-80 7-34 (543)
231 PRK13800 putative oxidoreducta 97.4 0.00017 3.7E-09 57.1 4.0 29 52-80 13-41 (897)
232 PRK02106 choline dehydrogenase 97.4 0.0002 4.3E-09 53.8 4.1 30 52-81 5-35 (560)
233 TIGR00136 gidA glucose-inhibit 97.4 0.00021 4.5E-09 55.0 4.1 28 53-80 1-28 (617)
234 PTZ00383 malate:quinone oxidor 97.4 0.00023 5E-09 53.3 4.2 30 51-80 44-75 (497)
235 PRK08071 L-aspartate oxidase; 97.4 0.0002 4.3E-09 53.5 3.8 28 52-80 3-30 (510)
236 COG1053 SdhA Succinate dehydro 97.4 0.00024 5.2E-09 54.1 4.2 30 51-80 5-34 (562)
237 COG1206 Gid NAD(FAD)-utilizing 97.4 0.00015 3.3E-09 52.8 3.0 28 53-80 4-31 (439)
238 PTZ00363 rab-GDP dissociation 97.4 0.00019 4.2E-09 53.1 3.6 29 52-80 4-32 (443)
239 TIGR03378 glycerol3P_GlpB glyc 97.4 0.00024 5.1E-09 52.5 4.0 28 53-80 1-28 (419)
240 COG3075 GlpB Anaerobic glycero 97.4 0.00022 4.7E-09 51.9 3.7 29 52-80 2-30 (421)
241 PTZ00318 NADH dehydrogenase-li 97.4 0.00021 4.5E-09 52.0 3.7 31 50-80 8-38 (424)
242 PRK02705 murD UDP-N-acetylmura 97.4 0.00021 4.6E-09 52.2 3.7 27 54-80 2-28 (459)
243 PRK06175 L-aspartate oxidase; 97.4 0.00021 4.6E-09 52.3 3.7 28 52-80 4-31 (433)
244 PRK07395 L-aspartate oxidase; 97.4 0.00022 4.8E-09 53.9 3.8 28 52-80 9-36 (553)
245 COG1249 Lpd Pyruvate/2-oxoglut 97.4 0.00028 6E-09 52.5 4.2 30 51-80 3-32 (454)
246 PRK12843 putative FAD-binding 97.3 0.00043 9.4E-09 52.4 5.2 29 52-80 16-44 (578)
247 TIGR01176 fum_red_Fp fumarate 97.3 0.00024 5.2E-09 54.0 3.8 28 53-80 4-33 (580)
248 KOG2415|consensus 97.3 0.00012 2.6E-09 54.8 2.0 27 48-74 72-98 (621)
249 PRK09231 fumarate reductase fl 97.3 0.00025 5.5E-09 53.8 3.8 28 53-80 5-34 (582)
250 PRK13339 malate:quinone oxidor 97.3 0.00031 6.7E-09 52.8 4.2 31 50-80 4-36 (497)
251 PLN02976 amine oxidase 97.3 0.0003 6.4E-09 58.7 4.3 30 51-80 692-721 (1713)
252 PF13738 Pyr_redox_3: Pyridine 97.3 0.00035 7.5E-09 45.2 3.8 32 49-80 164-195 (203)
253 COG2072 TrkA Predicted flavopr 97.3 0.00016 3.5E-09 53.3 2.4 55 23-80 149-203 (443)
254 COG0446 HcaD Uncharacterized N 97.3 0.00032 7E-09 49.2 3.8 30 52-81 136-165 (415)
255 COG0562 Glf UDP-galactopyranos 97.3 0.00031 6.8E-09 50.8 3.6 29 53-81 2-30 (374)
256 PF00743 FMO-like: Flavin-bind 97.3 0.0002 4.3E-09 54.1 2.7 53 25-80 159-211 (531)
257 PRK08205 sdhA succinate dehydr 97.3 0.00034 7.3E-09 53.1 3.9 28 52-80 5-32 (583)
258 PTZ00306 NADH-dependent fumara 97.3 0.00041 8.8E-09 56.5 4.5 30 51-80 408-437 (1167)
259 PRK12845 3-ketosteroid-delta-1 97.2 0.00061 1.3E-08 51.7 4.8 30 50-80 14-43 (564)
260 PRK09077 L-aspartate oxidase; 97.2 0.00047 1E-08 51.8 4.1 28 52-80 8-35 (536)
261 PRK14106 murD UDP-N-acetylmura 97.2 0.00051 1.1E-08 50.0 4.1 30 51-80 4-33 (450)
262 PF02737 3HCDH_N: 3-hydroxyacy 97.1 0.00069 1.5E-08 44.4 3.7 27 54-80 1-27 (180)
263 PRK04965 NADH:flavorubredoxin 97.1 0.00059 1.3E-08 48.7 3.6 25 53-77 3-27 (377)
264 PRK09897 hypothetical protein; 97.1 0.00059 1.3E-08 51.7 3.7 28 53-80 2-31 (534)
265 PF03721 UDPG_MGDP_dh_N: UDP-g 97.1 0.00053 1.1E-08 45.3 2.9 27 54-80 2-28 (185)
266 COG3573 Predicted oxidoreducta 97.1 0.00073 1.6E-08 49.7 3.7 29 52-80 5-33 (552)
267 COG0029 NadB Aspartate oxidase 97.0 0.00052 1.1E-08 51.7 2.7 26 54-80 9-34 (518)
268 TIGR01810 betA choline dehydro 97.0 0.00062 1.4E-08 50.8 3.1 27 54-80 1-28 (532)
269 PRK04965 NADH:flavorubredoxin 97.0 0.0011 2.3E-08 47.4 4.1 29 52-80 141-169 (377)
270 PRK09754 phenylpropionate diox 97.0 0.0011 2.5E-08 47.6 4.2 29 52-80 144-172 (396)
271 COG0578 GlpA Glycerol-3-phosph 97.0 0.001 2.2E-08 50.5 4.0 30 51-80 11-40 (532)
272 PF02558 ApbA: Ketopantoate re 97.0 0.0014 3E-08 41.0 3.9 26 55-80 1-26 (151)
273 TIGR03169 Nterm_to_SelD pyridi 96.9 0.00082 1.8E-08 47.4 3.2 27 54-80 1-30 (364)
274 COG2303 BetA Choline dehydroge 96.9 0.00081 1.8E-08 50.8 3.3 30 51-80 6-35 (542)
275 PLN02172 flavin-containing mon 96.9 0.00047 1E-08 51.1 1.9 33 48-80 200-232 (461)
276 PRK07512 L-aspartate oxidase; 96.9 0.00095 2.1E-08 49.9 3.4 27 52-80 9-35 (513)
277 PRK05976 dihydrolipoamide dehy 96.9 0.0014 3E-08 48.3 4.2 29 52-80 180-208 (472)
278 COG0579 Predicted dehydrogenas 96.9 0.0013 2.9E-08 48.7 3.8 29 52-80 3-33 (429)
279 PRK07251 pyridine nucleotide-d 96.9 0.0016 3.5E-08 47.3 4.2 29 52-80 157-185 (438)
280 TIGR03385 CoA_CoA_reduc CoA-di 96.8 0.0018 4E-08 46.8 4.3 29 52-80 137-165 (427)
281 TIGR01470 cysG_Nterm siroheme 96.8 0.0021 4.6E-08 43.1 4.2 31 50-80 7-37 (205)
282 TIGR01350 lipoamide_DH dihydro 96.8 0.0022 4.7E-08 46.8 4.4 29 52-80 170-198 (461)
283 COG0445 GidA Flavin-dependent 96.8 0.0011 2.4E-08 50.7 3.0 29 52-80 4-32 (621)
284 PRK06416 dihydrolipoamide dehy 96.7 0.0022 4.9E-08 46.8 4.2 29 52-80 172-200 (462)
285 PF13241 NAD_binding_7: Putati 96.7 0.0011 2.4E-08 39.7 2.2 30 51-80 6-35 (103)
286 PRK06719 precorrin-2 dehydroge 96.7 0.0028 6.2E-08 40.8 4.2 32 49-80 10-41 (157)
287 TIGR02053 MerA mercuric reduct 96.7 0.0023 5E-08 46.8 4.1 29 52-80 166-194 (463)
288 PF01488 Shikimate_DH: Shikima 96.7 0.0038 8.3E-08 39.0 4.5 31 50-80 10-41 (135)
289 PRK06115 dihydrolipoamide dehy 96.7 0.0028 6.1E-08 46.7 4.4 30 51-80 173-202 (466)
290 PRK06292 dihydrolipoamide dehy 96.7 0.0027 5.9E-08 46.3 4.3 30 51-80 168-197 (460)
291 PRK12831 putative oxidoreducta 96.7 0.0027 5.8E-08 47.0 4.2 31 50-80 279-309 (464)
292 PRK06370 mercuric reductase; V 96.7 0.0027 6E-08 46.5 4.2 29 52-80 171-199 (463)
293 TIGR01316 gltA glutamate synth 96.7 0.0028 6.1E-08 46.6 4.2 30 51-80 271-300 (449)
294 KOG0404|consensus 96.7 0.002 4.4E-08 45.0 3.2 29 52-80 8-36 (322)
295 KOG1298|consensus 96.7 0.0024 5.2E-08 47.5 3.7 31 51-81 44-74 (509)
296 PRK06912 acoL dihydrolipoamide 96.7 0.0029 6.3E-08 46.4 4.2 29 52-80 170-198 (458)
297 TIGR01421 gluta_reduc_1 glutat 96.7 0.003 6.5E-08 46.4 4.3 29 52-80 166-194 (450)
298 PRK05249 soluble pyridine nucl 96.7 0.0029 6.4E-08 46.1 4.2 29 52-80 175-203 (461)
299 PRK13512 coenzyme A disulfide 96.6 0.0029 6.3E-08 46.2 4.2 29 52-80 148-176 (438)
300 PRK06467 dihydrolipoamide dehy 96.6 0.003 6.6E-08 46.6 4.3 29 52-80 174-202 (471)
301 PRK07818 dihydrolipoamide dehy 96.6 0.0031 6.8E-08 46.3 4.2 29 52-80 172-200 (466)
302 PRK08293 3-hydroxybutyryl-CoA 96.6 0.0032 6.9E-08 43.7 3.9 28 53-80 4-31 (287)
303 PRK07846 mycothione reductase; 96.6 0.0033 7.2E-08 46.2 4.2 29 52-80 166-194 (451)
304 PRK13748 putative mercuric red 96.6 0.0035 7.5E-08 46.9 4.3 29 52-80 270-298 (561)
305 PRK09260 3-hydroxybutyryl-CoA 96.6 0.0036 7.9E-08 43.4 4.0 28 53-80 2-29 (288)
306 PRK06718 precorrin-2 dehydroge 96.6 0.0044 9.5E-08 41.4 4.3 31 50-80 8-38 (202)
307 PRK02472 murD UDP-N-acetylmura 96.6 0.0032 7E-08 45.8 3.9 29 52-80 5-33 (447)
308 PRK06129 3-hydroxyacyl-CoA deh 96.6 0.0033 7.2E-08 44.0 3.9 28 53-80 3-30 (308)
309 PRK07066 3-hydroxybutyryl-CoA 96.6 0.0045 9.7E-08 44.3 4.5 29 52-80 7-35 (321)
310 PRK07819 3-hydroxybutyryl-CoA 96.6 0.0029 6.3E-08 44.2 3.5 29 53-81 6-34 (286)
311 PRK12921 2-dehydropantoate 2-r 96.5 0.0038 8.2E-08 43.1 4.0 27 54-80 2-28 (305)
312 PRK09564 coenzyme A disulfide 96.5 0.0043 9.3E-08 45.0 4.4 29 52-80 149-177 (444)
313 TIGR02374 nitri_red_nirB nitri 96.5 0.0035 7.7E-08 49.2 4.1 29 52-80 140-168 (785)
314 PRK01710 murD UDP-N-acetylmura 96.5 0.0036 7.9E-08 46.1 4.0 29 52-80 14-42 (458)
315 PRK14694 putative mercuric red 96.5 0.0039 8.5E-08 45.8 4.1 29 52-80 178-206 (468)
316 PRK10262 thioredoxin reductase 96.5 0.0043 9.4E-08 43.2 4.1 30 51-80 145-174 (321)
317 TIGR03452 mycothione_red mycot 96.5 0.0042 9.2E-08 45.6 4.2 29 52-80 169-197 (452)
318 PRK06327 dihydrolipoamide dehy 96.5 0.0045 9.8E-08 45.7 4.4 29 52-80 183-211 (475)
319 TIGR01292 TRX_reduct thioredox 96.5 0.0044 9.5E-08 42.0 4.0 30 51-80 140-169 (300)
320 TIGR03140 AhpF alkyl hydropero 96.5 0.0039 8.4E-08 46.6 4.0 30 51-80 351-380 (515)
321 TIGR01438 TGR thioredoxin and 96.5 0.0047 1E-07 45.9 4.4 29 52-80 180-208 (484)
322 PRK07846 mycothione reductase; 96.5 0.0035 7.7E-08 46.1 3.7 26 53-80 2-27 (451)
323 TIGR03452 mycothione_red mycot 96.5 0.0037 8.1E-08 45.9 3.8 27 52-80 2-28 (452)
324 PRK06249 2-dehydropantoate 2-r 96.5 0.0053 1.1E-07 43.1 4.4 29 52-80 5-33 (313)
325 PRK07530 3-hydroxybutyryl-CoA 96.4 0.0047 1E-07 42.8 4.0 28 53-80 5-32 (292)
326 PRK03369 murD UDP-N-acetylmura 96.4 0.0046 9.9E-08 46.0 4.2 30 51-80 11-40 (488)
327 PRK12770 putative glutamate sy 96.4 0.0055 1.2E-07 43.4 4.4 29 52-80 172-201 (352)
328 PTZ00052 thioredoxin reductase 96.4 0.0048 1E-07 46.0 4.2 29 52-80 182-210 (499)
329 PRK14727 putative mercuric red 96.4 0.0049 1.1E-07 45.6 4.1 29 52-80 188-216 (479)
330 PF01262 AlaDh_PNT_C: Alanine 96.4 0.0054 1.2E-07 39.6 3.8 30 51-80 19-48 (168)
331 PRK06522 2-dehydropantoate 2-r 96.4 0.005 1.1E-07 42.3 3.9 27 54-80 2-28 (304)
332 TIGR03143 AhpF_homolog putativ 96.4 0.0045 9.7E-08 46.7 3.9 30 51-80 142-171 (555)
333 PRK15317 alkyl hydroperoxide r 96.4 0.0048 1E-07 46.1 4.0 30 51-80 350-379 (517)
334 PRK06116 glutathione reductase 96.4 0.0052 1.1E-07 44.8 4.1 29 52-80 167-195 (450)
335 PRK04308 murD UDP-N-acetylmura 96.4 0.0054 1.2E-07 44.8 4.2 29 52-80 5-33 (445)
336 PRK06035 3-hydroxyacyl-CoA deh 96.4 0.0053 1.2E-07 42.6 3.9 28 53-80 4-31 (291)
337 PLN02785 Protein HOTHEAD 96.4 0.0048 1E-07 47.2 3.9 28 52-80 55-82 (587)
338 PRK04690 murD UDP-N-acetylmura 96.4 0.0049 1.1E-07 45.7 3.8 29 52-80 8-36 (468)
339 PRK14989 nitrite reductase sub 96.3 0.0049 1.1E-07 49.0 4.0 28 53-80 4-35 (847)
340 TIGR01424 gluta_reduc_2 glutat 96.3 0.0058 1.2E-07 44.7 4.1 29 52-80 166-194 (446)
341 COG0569 TrkA K+ transport syst 96.3 0.0061 1.3E-07 41.3 4.0 28 53-80 1-28 (225)
342 COG1252 Ndh NADH dehydrogenase 96.3 0.005 1.1E-07 45.5 3.8 29 52-80 3-33 (405)
343 PRK07845 flavoprotein disulfid 96.3 0.0062 1.3E-07 44.9 4.1 29 52-80 177-205 (466)
344 PRK00141 murD UDP-N-acetylmura 96.3 0.007 1.5E-07 44.9 4.4 31 50-80 13-43 (473)
345 COG4529 Uncharacterized protei 96.3 0.0043 9.4E-08 46.6 3.2 23 53-75 2-24 (474)
346 PRK14989 nitrite reductase sub 96.3 0.006 1.3E-07 48.5 4.1 29 52-80 145-173 (847)
347 PRK05808 3-hydroxybutyryl-CoA 96.2 0.0068 1.5E-07 41.8 3.8 28 53-80 4-31 (282)
348 PRK05708 2-dehydropantoate 2-r 96.2 0.0075 1.6E-07 42.4 4.0 28 53-80 3-30 (305)
349 COG1004 Ugd Predicted UDP-gluc 96.2 0.0057 1.2E-07 45.2 3.4 27 54-80 2-28 (414)
350 COG1249 Lpd Pyruvate/2-oxoglut 96.2 0.008 1.7E-07 44.9 4.2 32 50-81 171-202 (454)
351 PRK11749 dihydropyrimidine deh 96.2 0.0081 1.8E-07 44.1 4.1 30 51-80 272-302 (457)
352 KOG2852|consensus 96.2 0.0021 4.6E-08 46.2 1.0 26 50-75 8-33 (380)
353 PRK08229 2-dehydropantoate 2-r 96.2 0.0082 1.8E-07 42.2 3.9 28 53-80 3-30 (341)
354 PRK08010 pyridine nucleotide-d 96.1 0.0097 2.1E-07 43.3 4.3 29 52-80 158-186 (441)
355 KOG1399|consensus 96.1 0.005 1.1E-07 45.9 2.7 50 28-80 165-214 (448)
356 PLN02507 glutathione reductase 96.1 0.0091 2E-07 44.6 4.1 29 52-80 203-231 (499)
357 PRK00421 murC UDP-N-acetylmura 96.1 0.0077 1.7E-07 44.3 3.6 31 50-80 5-36 (461)
358 TIGR02374 nitri_red_nirB nitri 96.1 0.0067 1.5E-07 47.7 3.4 26 55-80 1-29 (785)
359 cd01075 NAD_bind_Leu_Phe_Val_D 96.0 0.012 2.6E-07 39.2 4.2 30 51-80 27-56 (200)
360 KOG1335|consensus 96.0 0.0074 1.6E-07 45.0 3.3 30 51-80 38-67 (506)
361 PRK12778 putative bifunctional 96.0 0.011 2.4E-07 46.1 4.4 30 51-80 569-599 (752)
362 PTZ00058 glutathione reductase 96.0 0.011 2.5E-07 45.0 4.2 29 52-80 237-265 (561)
363 PRK06130 3-hydroxybutyryl-CoA 96.0 0.014 2.9E-07 40.8 4.3 28 53-80 5-32 (311)
364 PRK14620 NAD(P)H-dependent gly 95.9 0.011 2.4E-07 41.5 3.8 27 54-80 2-28 (326)
365 PRK11730 fadB multifunctional 95.9 0.027 5.7E-07 44.1 6.1 30 52-81 313-342 (715)
366 PRK01390 murD UDP-N-acetylmura 95.9 0.01 2.2E-07 43.6 3.7 29 52-80 9-37 (460)
367 PRK02006 murD UDP-N-acetylmura 95.9 0.011 2.3E-07 44.0 3.8 29 52-80 7-35 (498)
368 PRK04148 hypothetical protein; 95.9 0.0073 1.6E-07 38.4 2.5 28 52-80 17-44 (134)
369 KOG2960|consensus 95.9 0.0012 2.6E-08 45.9 -1.2 54 23-78 49-102 (328)
370 PTZ00153 lipoamide dehydrogena 95.8 0.013 2.8E-07 45.6 4.1 29 52-80 312-340 (659)
371 PLN02546 glutathione reductase 95.8 0.015 3.2E-07 44.3 4.2 30 51-80 251-280 (558)
372 PLN02545 3-hydroxybutyryl-CoA 95.8 0.014 3E-07 40.5 3.8 28 53-80 5-32 (295)
373 KOG2311|consensus 95.8 0.01 2.2E-07 45.3 3.2 31 50-80 26-56 (679)
374 PRK11064 wecC UDP-N-acetyl-D-m 95.8 0.013 2.8E-07 43.0 3.6 28 53-80 4-31 (415)
375 PRK05562 precorrin-2 dehydroge 95.7 0.022 4.7E-07 39.0 4.5 32 49-80 22-53 (223)
376 TIGR03026 NDP-sugDHase nucleot 95.7 0.012 2.7E-07 42.7 3.5 27 54-80 2-28 (411)
377 TIGR02437 FadB fatty oxidation 95.7 0.015 3.1E-07 45.6 4.1 32 50-81 311-342 (714)
378 PRK14618 NAD(P)H-dependent gly 95.7 0.016 3.4E-07 40.8 3.8 28 53-80 5-32 (328)
379 PRK01368 murD UDP-N-acetylmura 95.7 0.013 2.9E-07 43.4 3.5 29 51-80 5-33 (454)
380 TIGR00518 alaDH alanine dehydr 95.7 0.019 4.1E-07 41.6 4.2 30 51-80 166-195 (370)
381 KOG3923|consensus 95.7 0.0083 1.8E-07 43.1 2.2 26 52-77 3-28 (342)
382 TIGR02279 PaaC-3OHAcCoADH 3-hy 95.6 0.016 3.4E-07 43.7 3.8 29 53-81 6-34 (503)
383 PRK08268 3-hydroxy-acyl-CoA de 95.6 0.016 3.5E-07 43.6 3.8 30 52-81 7-36 (507)
384 COG1893 ApbA Ketopantoate redu 95.6 0.019 4.1E-07 40.7 3.8 27 54-80 2-28 (307)
385 PRK12779 putative bifunctional 95.6 0.019 4E-07 46.3 4.2 30 51-80 446-475 (944)
386 TIGR02354 thiF_fam2 thiamine b 95.6 0.022 4.7E-07 38.0 3.9 30 51-80 20-50 (200)
387 PRK14619 NAD(P)H-dependent gly 95.6 0.024 5.1E-07 39.8 4.3 29 52-80 4-32 (308)
388 TIGR01763 MalateDH_bact malate 95.6 0.02 4.3E-07 40.5 3.9 28 53-80 2-30 (305)
389 PRK12810 gltD glutamate syntha 95.5 0.023 5.1E-07 42.0 4.4 30 50-79 279-309 (471)
390 cd01080 NAD_bind_m-THF_DH_Cycl 95.5 0.026 5.6E-07 36.9 4.0 31 50-80 42-73 (168)
391 COG0771 MurD UDP-N-acetylmuram 95.5 0.015 3.3E-07 43.4 3.2 29 52-80 7-35 (448)
392 PRK03806 murD UDP-N-acetylmura 95.5 0.021 4.6E-07 41.6 3.9 29 52-80 6-34 (438)
393 PRK08306 dipicolinate synthase 95.5 0.026 5.6E-07 39.8 4.1 30 51-80 151-180 (296)
394 PRK00094 gpsA NAD(P)H-dependen 95.5 0.023 4.9E-07 39.5 3.8 27 54-80 3-29 (325)
395 cd01078 NAD_bind_H4MPT_DH NADP 95.4 0.029 6.3E-07 36.6 4.1 30 51-80 27-57 (194)
396 KOG4716|consensus 95.4 0.022 4.8E-07 42.1 3.7 31 50-80 17-47 (503)
397 TIGR02853 spore_dpaA dipicolin 95.4 0.027 5.9E-07 39.5 4.0 30 51-80 150-179 (287)
398 TIGR01087 murD UDP-N-acetylmur 95.4 0.019 4.1E-07 41.7 3.3 27 54-80 1-27 (433)
399 TIGR02441 fa_ox_alpha_mit fatt 95.4 0.027 5.8E-07 44.3 4.3 32 50-81 333-364 (737)
400 PRK12814 putative NADPH-depend 95.3 0.028 6.1E-07 43.4 4.3 30 51-80 322-352 (652)
401 KOG4254|consensus 95.3 0.017 3.8E-07 43.7 3.0 31 50-80 12-42 (561)
402 PRK07531 bifunctional 3-hydrox 95.3 0.026 5.7E-07 42.2 3.9 28 53-80 5-32 (495)
403 PRK03803 murD UDP-N-acetylmura 95.3 0.023 5E-07 41.6 3.5 29 52-80 6-34 (448)
404 PRK09424 pntA NAD(P) transhydr 95.2 0.029 6.3E-07 42.5 4.0 30 51-80 164-193 (509)
405 TIGR01423 trypano_reduc trypan 95.2 0.03 6.5E-07 41.8 4.1 29 52-80 187-218 (486)
406 PRK12549 shikimate 5-dehydroge 95.2 0.035 7.6E-07 38.8 4.1 30 51-80 126-156 (284)
407 COG1748 LYS9 Saccharopine dehy 95.2 0.029 6.3E-07 41.3 3.8 28 53-80 2-30 (389)
408 cd00401 AdoHcyase S-adenosyl-L 95.2 0.034 7.4E-07 41.2 4.2 30 51-80 201-230 (413)
409 PRK11199 tyrA bifunctional cho 95.1 0.072 1.6E-06 38.6 5.7 30 51-80 97-127 (374)
410 TIGR00507 aroE shikimate 5-deh 95.1 0.037 8E-07 38.1 4.0 30 51-80 116-145 (270)
411 KOG2844|consensus 95.1 0.026 5.7E-07 44.5 3.5 29 52-80 39-67 (856)
412 PF13434 K_oxygenase: L-lysine 95.1 0.029 6.2E-07 40.2 3.5 27 50-76 188-214 (341)
413 PRK13984 putative oxidoreducta 95.0 0.036 7.8E-07 42.1 4.1 26 51-76 417-442 (604)
414 COG0240 GpsA Glycerol-3-phosph 95.0 0.036 7.7E-07 40.0 3.8 28 53-80 2-29 (329)
415 PRK11154 fadJ multifunctional 95.0 0.033 7.2E-07 43.5 3.8 31 51-81 308-339 (708)
416 COG1250 FadB 3-hydroxyacyl-CoA 95.0 0.027 5.9E-07 40.2 3.1 30 52-81 3-32 (307)
417 TIGR03376 glycerol3P_DH glycer 95.0 0.038 8.2E-07 39.9 3.8 27 54-80 1-35 (342)
418 PLN02520 bifunctional 3-dehydr 94.9 0.041 8.9E-07 41.7 4.1 30 51-80 378-407 (529)
419 PF00899 ThiF: ThiF family; I 94.9 0.046 1E-06 33.8 3.6 26 52-77 2-27 (135)
420 COG0492 TrxB Thioredoxin reduc 94.9 0.046 1E-06 38.8 4.0 31 50-80 141-171 (305)
421 PRK00683 murD UDP-N-acetylmura 94.8 0.035 7.7E-07 40.4 3.5 28 53-80 4-31 (418)
422 PF03446 NAD_binding_2: NAD bi 94.8 0.047 1E-06 34.9 3.7 28 53-80 2-29 (163)
423 TIGR02440 FadJ fatty oxidation 94.8 0.036 7.8E-07 43.3 3.6 31 51-81 303-334 (699)
424 PRK12548 shikimate 5-dehydroge 94.8 0.059 1.3E-06 37.7 4.4 30 51-80 125-155 (289)
425 PLN02695 GDP-D-mannose-3',5'-e 94.8 0.054 1.2E-06 38.8 4.2 31 50-80 19-50 (370)
426 TIGR01915 npdG NADPH-dependent 94.8 0.049 1.1E-06 36.4 3.8 27 54-80 2-29 (219)
427 PTZ00318 NADH dehydrogenase-li 94.7 0.047 1E-06 39.8 3.9 21 53-73 174-194 (424)
428 cd05311 NAD_bind_2_malic_enz N 94.7 0.058 1.3E-06 36.6 4.1 27 51-77 24-50 (226)
429 cd05292 LDH_2 A subgroup of L- 94.7 0.047 1E-06 38.5 3.8 23 54-76 2-24 (308)
430 cd05291 HicDH_like L-2-hydroxy 94.7 0.051 1.1E-06 38.2 3.9 24 53-76 1-24 (306)
431 PRK00258 aroE shikimate 5-dehy 94.7 0.06 1.3E-06 37.3 4.1 30 51-80 122-152 (278)
432 PRK12475 thiamine/molybdopteri 94.6 0.059 1.3E-06 38.7 4.1 27 51-77 23-49 (338)
433 KOG2404|consensus 94.6 0.037 7.9E-07 40.7 3.1 27 54-80 11-37 (477)
434 TIGR01505 tartro_sem_red 2-hyd 94.6 0.046 9.9E-07 37.8 3.4 27 54-80 1-27 (291)
435 COG3634 AhpF Alkyl hydroperoxi 94.6 0.029 6.3E-07 41.6 2.5 26 50-75 352-377 (520)
436 PTZ00082 L-lactate dehydrogena 94.6 0.064 1.4E-06 38.2 4.2 24 53-76 7-30 (321)
437 PRK07417 arogenate dehydrogena 94.6 0.046 9.9E-07 37.8 3.4 27 54-80 2-28 (279)
438 PF10727 Rossmann-like: Rossma 94.5 0.018 3.9E-07 36.1 1.2 30 50-79 8-37 (127)
439 PRK14573 bifunctional D-alanyl 94.5 0.041 8.8E-07 43.4 3.3 28 53-80 5-33 (809)
440 PRK08017 oxidoreductase; Provi 94.5 0.065 1.4E-06 35.5 3.8 28 53-80 3-31 (256)
441 cd05191 NAD_bind_amino_acid_DH 94.4 0.1 2.2E-06 30.0 4.2 29 51-79 22-51 (86)
442 PRK00045 hemA glutamyl-tRNA re 94.4 0.069 1.5E-06 39.2 4.2 30 51-80 181-211 (423)
443 PLN02353 probable UDP-glucose 94.4 0.056 1.2E-06 40.6 3.7 26 54-79 3-30 (473)
444 PF13460 NAD_binding_10: NADH( 94.4 0.073 1.6E-06 33.7 3.8 26 55-80 1-27 (183)
445 PRK15057 UDP-glucose 6-dehydro 94.4 0.059 1.3E-06 39.4 3.8 26 54-80 2-27 (388)
446 cd01487 E1_ThiF_like E1_ThiF_l 94.4 0.071 1.5E-06 34.7 3.8 27 54-80 1-28 (174)
447 TIGR01035 hemA glutamyl-tRNA r 94.4 0.068 1.5E-06 39.3 4.1 30 51-80 179-209 (417)
448 TIGR02356 adenyl_thiF thiazole 94.4 0.089 1.9E-06 35.0 4.3 27 51-77 20-46 (202)
449 PRK06223 malate dehydrogenase; 94.4 0.069 1.5E-06 37.2 3.9 28 53-80 3-31 (307)
450 TIGR03169 Nterm_to_SelD pyridi 94.3 0.084 1.8E-06 37.3 4.3 22 52-73 145-166 (364)
451 cd01065 NAD_bind_Shikimate_DH 94.3 0.1 2.2E-06 32.4 4.2 30 51-80 18-48 (155)
452 TIGR00936 ahcY adenosylhomocys 94.2 0.077 1.7E-06 39.2 4.0 31 50-80 193-223 (406)
453 KOG2665|consensus 94.2 0.046 1E-06 40.1 2.8 31 50-80 46-78 (453)
454 PRK14188 bifunctional 5,10-met 94.2 0.077 1.7E-06 37.7 3.9 31 50-80 156-187 (296)
455 PLN00141 Tic62-NAD(P)-related 94.2 0.096 2.1E-06 35.1 4.2 31 50-80 15-46 (251)
456 PLN02572 UDP-sulfoquinovose sy 94.2 0.11 2.4E-06 38.3 4.8 32 49-80 44-76 (442)
457 PRK07523 gluconate 5-dehydroge 94.1 0.098 2.1E-06 34.8 4.1 30 51-80 9-39 (255)
458 PRK03815 murD UDP-N-acetylmura 94.1 0.059 1.3E-06 39.4 3.2 26 54-80 2-27 (401)
459 PRK07774 short chain dehydroge 94.1 0.1 2.2E-06 34.5 4.2 29 52-80 6-35 (250)
460 PRK00066 ldh L-lactate dehydro 94.1 0.1 2.3E-06 37.0 4.4 28 50-77 4-31 (315)
461 TIGR01809 Shik-DH-AROM shikima 94.1 0.092 2E-06 36.6 4.1 30 51-80 124-154 (282)
462 PRK05476 S-adenosyl-L-homocyst 94.1 0.087 1.9E-06 39.2 4.1 30 51-80 211-240 (425)
463 KOG2495|consensus 94.1 0.034 7.4E-07 41.8 2.0 22 52-73 218-239 (491)
464 TIGR01832 kduD 2-deoxy-D-gluco 94.1 0.1 2.2E-06 34.5 4.1 30 51-80 4-34 (248)
465 PRK08217 fabG 3-ketoacyl-(acyl 94.0 0.11 2.3E-06 34.2 4.1 29 52-80 5-34 (253)
466 PLN02662 cinnamyl-alcohol dehy 94.0 0.086 1.9E-06 36.2 3.8 29 52-80 4-33 (322)
467 PLN02214 cinnamoyl-CoA reducta 94.0 0.12 2.6E-06 36.5 4.6 30 51-80 9-39 (342)
468 PF06100 Strep_67kDa_ant: Stre 94.0 0.056 1.2E-06 41.0 3.0 25 52-76 2-26 (500)
469 PRK12769 putative oxidoreducta 94.0 0.092 2E-06 40.5 4.2 30 51-80 467-497 (654)
470 PF07991 IlvN: Acetohydroxy ac 94.0 0.11 2.4E-06 34.2 4.0 30 51-80 3-32 (165)
471 PRK08644 thiamine biosynthesis 94.0 0.11 2.3E-06 35.0 4.1 27 51-77 27-53 (212)
472 PRK06057 short chain dehydroge 94.0 0.11 2.4E-06 34.7 4.1 29 52-80 7-36 (255)
473 COG1648 CysG Siroheme synthase 93.9 0.11 2.4E-06 35.1 4.1 31 50-80 10-40 (210)
474 TIGR01317 GOGAT_sm_gam glutama 93.9 0.11 2.3E-06 38.8 4.4 31 50-80 281-312 (485)
475 TIGR01214 rmlD dTDP-4-dehydror 93.9 0.092 2E-06 35.5 3.7 27 54-80 1-28 (287)
476 PRK09496 trkA potassium transp 93.9 0.093 2E-06 38.1 4.0 27 54-80 2-28 (453)
477 PRK14192 bifunctional 5,10-met 93.9 0.11 2.3E-06 36.6 4.1 31 50-80 157-188 (283)
478 PRK07688 thiamine/molybdopteri 93.9 0.11 2.4E-06 37.4 4.2 27 51-77 23-49 (339)
479 PTZ00345 glycerol-3-phosphate 93.9 0.11 2.4E-06 37.8 4.2 30 51-80 10-46 (365)
480 TIGR00561 pntA NAD(P) transhyd 93.9 0.089 1.9E-06 40.0 3.8 29 52-80 164-192 (511)
481 COG1063 Tdh Threonine dehydrog 93.8 0.1 2.2E-06 37.3 4.0 27 54-80 171-197 (350)
482 cd05211 NAD_bind_Glu_Leu_Phe_V 93.8 0.11 2.5E-06 35.1 4.0 29 51-79 22-50 (217)
483 TIGR01082 murC UDP-N-acetylmur 93.8 0.072 1.6E-06 39.1 3.2 27 54-80 1-28 (448)
484 PRK09288 purT phosphoribosylgl 93.8 0.14 3.1E-06 36.6 4.6 30 51-80 11-40 (395)
485 TIGR01318 gltD_gamma_fam gluta 93.7 0.11 2.3E-06 38.6 4.0 30 51-80 281-311 (467)
486 COG1252 Ndh NADH dehydrogenase 93.7 0.06 1.3E-06 39.8 2.7 25 52-76 155-179 (405)
487 cd05293 LDH_1 A subgroup of L- 93.7 0.13 2.8E-06 36.6 4.3 27 52-78 3-29 (312)
488 PRK15116 sulfur acceptor prote 93.7 0.12 2.7E-06 36.1 4.2 27 51-77 29-55 (268)
489 PLN02583 cinnamoyl-CoA reducta 93.7 0.13 2.9E-06 35.5 4.3 29 52-80 6-35 (297)
490 PF00056 Ldh_1_N: lactate/mala 93.7 0.11 2.3E-06 32.8 3.5 24 54-77 2-26 (141)
491 TIGR01202 bchC 2-desacetyl-2-h 93.6 0.14 3.1E-06 35.5 4.4 28 52-79 145-172 (308)
492 PLN02896 cinnamyl-alcohol dehy 93.6 0.14 3E-06 36.1 4.3 30 51-80 9-39 (353)
493 PRK11559 garR tartronate semia 93.6 0.11 2.4E-06 35.9 3.7 28 53-80 3-30 (296)
494 cd00757 ThiF_MoeB_HesA_family 93.6 0.15 3.2E-06 34.4 4.3 28 51-78 20-47 (228)
495 PTZ00117 malate dehydrogenase; 93.6 0.13 2.9E-06 36.5 4.2 26 51-76 4-29 (319)
496 PRK12439 NAD(P)H-dependent gly 93.6 0.15 3.3E-06 36.3 4.5 26 51-76 6-31 (341)
497 cd08230 glucose_DH Glucose deh 93.6 0.15 3.2E-06 35.9 4.4 30 51-80 172-201 (355)
498 TIGR02622 CDP_4_6_dhtase CDP-g 93.6 0.13 2.8E-06 36.1 4.1 29 52-80 4-33 (349)
499 PRK10669 putative cation:proto 93.6 0.21 4.5E-06 37.8 5.4 29 52-80 417-445 (558)
500 cd05213 NAD_bind_Glutamyl_tRNA 93.6 0.12 2.5E-06 36.5 3.9 30 51-80 177-207 (311)
No 1
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.87 E-value=3.9e-22 Score=145.80 Aligned_cols=80 Identities=66% Similarity=1.105 Sum_probs=70.4
Q ss_pred CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
||||+|||||+.+|++...++||+|+.+++|+.++.....|..+..+.+...++|+|||+|+||+++|.+|+++|++|+|
T Consensus 92 ~~g~vC~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~v 171 (471)
T PRK12810 92 FTGRVCPAPCEGACTLNINFGPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTV 171 (471)
T ss_pred HhcCcCCchhHHhccCCCCCCCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence 69999999999999999999999999999999998887776222233445678999999999999999999999999987
No 2
>PRK12831 putative oxidoreductase; Provisional
Probab=99.87 E-value=5.3e-22 Score=145.25 Aligned_cols=79 Identities=44% Similarity=0.686 Sum_probs=71.4
Q ss_pred CccccCcc--chHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001 1 FTGRVCPA--PCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE 78 (81)
Q Consensus 1 ~~~riC~~--~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v 78 (81)
||||+||| |||.+|+++..++||+|+.+++|+.++....+|.. ..+.+.+.++|+|||+||||+++|++|+++|++|
T Consensus 88 ~~grvC~~~~~Ce~~C~r~~~~~~v~I~~l~r~~~~~~~~~~~~~-~~~~~~~~~~V~IIG~GpAGl~aA~~l~~~G~~V 166 (464)
T PRK12831 88 VCGRVCPQESQCEGKCVLGIKGEPVAIGKLERFVADWARENGIDL-SETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDV 166 (464)
T ss_pred hhhccCCCCCChHHHhcCCCCCCCeehhHHHHHHHHHHHHcCCCC-CCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCeE
Confidence 69999998 99999999999999999999999999988877643 2344567899999999999999999999999999
Q ss_pred ee
Q psy11001 79 LI 80 (81)
Q Consensus 79 ~v 80 (81)
+|
T Consensus 167 ~v 168 (464)
T PRK12831 167 TI 168 (464)
T ss_pred EE
Confidence 87
No 3
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.86 E-value=1.2e-21 Score=153.67 Aligned_cols=80 Identities=23% Similarity=0.444 Sum_probs=67.4
Q ss_pred CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCC-CccCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIP-TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTEL 79 (81)
Q Consensus 1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~ 79 (81)
|||||||||||.+|+|+..++||+|+.+++++.++...........+ .+.+.++|+||||||||++||++|+++|++|+
T Consensus 485 icGrVC~h~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~~~kkVaIIGGGPAGLSAA~~LAr~G~~VT 564 (1012)
T TIGR03315 485 ITGTICDHQCQYKCTRLDYDESVNIREMKKVAAEKGYDEYKTRWHKPQGKSSAHKVAVIGAGPAGLSAGYFLARAGHPVT 564 (1012)
T ss_pred HhhCcCCcchHHHhcCCCCCCCCcccHHHHHHHhhHHHhcCccCCCCCCCCCCCcEEEECCCHHHHHHHHHHHHCCCeEE
Confidence 69999999999999999999999999999999998765422111111 23456899999999999999999999999998
Q ss_pred e
Q psy11001 80 I 80 (81)
Q Consensus 80 v 80 (81)
|
T Consensus 565 V 565 (1012)
T TIGR03315 565 V 565 (1012)
T ss_pred E
Confidence 7
No 4
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.85 E-value=2.3e-21 Score=146.46 Aligned_cols=80 Identities=44% Similarity=0.723 Sum_probs=70.6
Q ss_pred CccccCcc--chHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001 1 FTGRVCPA--PCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE 78 (81)
Q Consensus 1 ~~~riC~~--~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v 78 (81)
||||+||+ |||.+|+++..++||+|+.||+|+.++.....|.+...+.+.++++|+||||||||+++|.+|+++|++|
T Consensus 274 ~~grvCp~~~~Ce~~C~~~~~~~~v~I~~l~r~~~d~~~~~~~~~~~~~~~~~~~~VaIIGaGpAGLsaA~~L~~~G~~V 353 (654)
T PRK12769 274 ITGRVCPQDRLCEGACTLRDEYGAVTIGNIERYISDQALAKGWRPDLSQVTKSDKRVAIIGAGPAGLACADVLARNGVAV 353 (654)
T ss_pred HhcccCCCCCChHHhccCCCCCCCeecCHHHHHHHHHHHHhCCCCCCcccccCCCEEEEECCCHHHHHHHHHHHHCCCeE
Confidence 69999994 8999999999999999999999999999888875433223356789999999999999999999999999
Q ss_pred ee
Q psy11001 79 LI 80 (81)
Q Consensus 79 ~v 80 (81)
+|
T Consensus 354 ~V 355 (654)
T PRK12769 354 TV 355 (654)
T ss_pred EE
Confidence 87
No 5
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.85 E-value=3.3e-21 Score=141.13 Aligned_cols=80 Identities=43% Similarity=0.719 Sum_probs=71.0
Q ss_pred CccccCc--cchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001 1 FTGRVCP--APCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE 78 (81)
Q Consensus 1 ~~~riC~--~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v 78 (81)
||||+|| +||+.+|+++..++||+|+.|++|+.++.....|.+...+.+.+.++|+|||+||+|+++|.+|+++|++|
T Consensus 88 ~~grvC~~~~~Ce~~C~~~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~GpaGl~aA~~l~~~G~~V 167 (467)
T TIGR01318 88 ICGRVCPQDRLCEGACTLNDEFGAVTIGNLERYITDTALAMGWRPDLSHVVPTGKRVAVIGAGPAGLACADILARAGVQV 167 (467)
T ss_pred hhcccCCCCCChHHhCcCCCCCCCccHHHHHHHHHHHHHHhCCCCCCCCcCCCCCeEEEECCCHHHHHHHHHHHHcCCeE
Confidence 6999999 49999999999999999999999999998887776543334457789999999999999999999999998
Q ss_pred ee
Q psy11001 79 LI 80 (81)
Q Consensus 79 ~v 80 (81)
+|
T Consensus 168 ~i 169 (467)
T TIGR01318 168 VV 169 (467)
T ss_pred EE
Confidence 86
No 6
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.85 E-value=2.6e-21 Score=151.79 Aligned_cols=80 Identities=26% Similarity=0.488 Sum_probs=68.1
Q ss_pred CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCC-CccCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIP-TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTEL 79 (81)
Q Consensus 1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~ 79 (81)
||||+||||||.+|+|+..++||+|+.+++++.+............+ .+.++++|+||||||||+++|++|+++|++|+
T Consensus 487 icGrVCph~Ce~~C~R~~~d~pV~I~~Lkr~a~d~~~~~~~~~~~~~~~~~tgKkVaIIGgGPAGLsAA~~Lar~G~~Vt 566 (1019)
T PRK09853 487 ITGHICDHQCQYNCTRLDYDEAVNIRELKKVALEKGWDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLARAGHPVT 566 (1019)
T ss_pred HhhCcCCchhHHHhcCCCCCCCeeccHHHHHHHhhHHHhcccccCCCCccCCCCcEEEECCCHHHHHHHHHHHHcCCeEE
Confidence 69999999999999999999999999999999988765432111112 24577899999999999999999999999998
Q ss_pred e
Q psy11001 80 I 80 (81)
Q Consensus 80 v 80 (81)
|
T Consensus 567 V 567 (1019)
T PRK09853 567 V 567 (1019)
T ss_pred E
Confidence 7
No 7
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.84 E-value=5.9e-21 Score=144.07 Aligned_cols=80 Identities=40% Similarity=0.693 Sum_probs=71.9
Q ss_pred CccccCcc--chHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001 1 FTGRVCPA--PCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE 78 (81)
Q Consensus 1 ~~~riC~~--~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v 78 (81)
||||+||+ |||.+|+++..++||+|+.||+|+.++...++|.+...+.+.++++|+|||+||+|+++|++|+++|++|
T Consensus 257 ~~grvCp~~~~Ce~~C~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~kkVaIIG~GpaGl~aA~~L~~~G~~V 336 (639)
T PRK12809 257 ICGRVCPQDRLCEGACTLKDHSGAVSIGNLERYITDTALAMGWRPDVSKVVPRSEKVAVIGAGPAGLGCADILARAGVQV 336 (639)
T ss_pred hhcccCCCCCChHHhccCCCcCCCcChhHHHHHHHHHHHHhCCCCCCCcccCCCCEEEEECcCHHHHHHHHHHHHcCCcE
Confidence 69999994 9999999999999999999999999999988886544344456899999999999999999999999999
Q ss_pred ee
Q psy11001 79 LI 80 (81)
Q Consensus 79 ~v 80 (81)
+|
T Consensus 337 tv 338 (639)
T PRK12809 337 DV 338 (639)
T ss_pred EE
Confidence 87
No 8
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.84 E-value=5.1e-21 Score=140.71 Aligned_cols=80 Identities=64% Similarity=1.133 Sum_probs=71.0
Q ss_pred CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
||||+|||+|+++|+++..++||+|+.+++|+.++.....|..+..+.+...++|+|||+|++|+++|.+|+++|++|+|
T Consensus 92 ~~grvC~~~Ce~~C~~~~~~~~v~I~~l~r~~~~~~~~~~~~~~~~~~~~~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v 171 (485)
T TIGR01317 92 FTGRVCPAPCEGACTLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNRAGHTVTV 171 (485)
T ss_pred HHhCcCChhhHHhccCCCCCCCcchhHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 69999999999999999999999999999999998887776544333445668999999999999999999999999987
No 9
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.84 E-value=5.3e-21 Score=150.27 Aligned_cols=79 Identities=35% Similarity=0.518 Sum_probs=69.9
Q ss_pred CccccCcc--chHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001 1 FTGRVCPA--PCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE 78 (81)
Q Consensus 1 ~~~riC~~--~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v 78 (81)
||||+||| |||.+|+++..++||.|+.+|+|+.++....++..+ +.+.+.++|+|||||||||++|.+|+++|++|
T Consensus 379 ~~grvCp~~~~Ce~~C~~~~~~~pv~I~~ler~~~d~~~~~~~~~~--~~~~~~~kVaIIG~GPAGLsaA~~La~~G~~V 456 (1006)
T PRK12775 379 ICGRVCPQETQCEAQCIIAKKHESVGIGRLERFVGDNARAKPVKPP--RFSKKLGKVAICGSGPAGLAAAADLVKYGVDV 456 (1006)
T ss_pred HhcCcCCCCCCHHHhCcCCCCCCCeeecHHHHHHHHHHHHcCCCCC--CCCCCCCEEEEECCCHHHHHHHHHHHHcCCcE
Confidence 69999998 999999999999999999999999999887776432 22345789999999999999999999999999
Q ss_pred eeC
Q psy11001 79 LIK 81 (81)
Q Consensus 79 ~v~ 81 (81)
+|.
T Consensus 457 tV~ 459 (1006)
T PRK12775 457 TVY 459 (1006)
T ss_pred EEE
Confidence 873
No 10
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.83 E-value=1.6e-20 Score=136.80 Aligned_cols=80 Identities=35% Similarity=0.611 Sum_probs=70.0
Q ss_pred CccccCcc--chHHHhhcCC----CCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHc
Q psy11001 1 FTGRVCPA--PCEGACVLGI----NEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKE 74 (81)
Q Consensus 1 ~~~riC~~--~C~~~C~~~~----~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~ 74 (81)
||||+||| +|+.+|+++. .++||+|+.+++|+.++....++.....+.+.+.++|+|||+|++|+++|.+|+++
T Consensus 76 ~~grvC~~~~~Ce~~C~~~~~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~V~IIG~G~aGl~aA~~l~~~ 155 (449)
T TIGR01316 76 ICGRVCPQERQCEGQCTVGKMFKDVGKPVSIGALERFVADWERQHGIETEPEKAPSTHKKVAVIGAGPAGLACASELAKA 155 (449)
T ss_pred HhccCCCCccchHhhCcCCCcCCCCCCCccHHHHHHHHHhHHHhcCCCcCCCCCCCCCCEEEEECcCHHHHHHHHHHHHC
Confidence 69999999 9999999887 89999999999999998877665443334456778999999999999999999999
Q ss_pred CCCeee
Q psy11001 75 AGTELI 80 (81)
Q Consensus 75 g~~v~v 80 (81)
|++|+|
T Consensus 156 G~~V~v 161 (449)
T TIGR01316 156 GHSVTV 161 (449)
T ss_pred CCcEEE
Confidence 999987
No 11
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.82 E-value=4.9e-20 Score=139.51 Aligned_cols=80 Identities=36% Similarity=0.532 Sum_probs=68.5
Q ss_pred CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
||||+|||||++.|++...++|+.|..+++|..++.....+.....+.+...++|+|||+||||+++|.+|+++|++|+|
T Consensus 142 ~~grvC~~~Ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv 221 (652)
T PRK12814 142 ILGRICPAPCEEACRRHGVDEPVSICALKRYAADRDMESAERYIPERAPKSGKKVAIIGAGPAGLTAAYYLLRKGHDVTI 221 (652)
T ss_pred eeeCCcCchhhHHHcCCCCCCCcchhHHHHHHHHHHHhcCcccCCCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 69999999999999999999999999999999988766443322222345678999999999999999999999999987
No 12
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.81 E-value=4e-20 Score=144.69 Aligned_cols=79 Identities=25% Similarity=0.497 Sum_probs=65.2
Q ss_pred Ccc-ccCccchHHHhhcCCCCCccchhhHHHHHHHhhH-----------hhCCCCC----CCCCccCCCcEEEECCCHHH
Q psy11001 1 FTG-RVCPAPCEGACVLGINEPAVTIKNIECAIIDHAF-----------EQGWIKP----EIPTLRTGKKVAIVGSGPSG 64 (81)
Q Consensus 1 ~~~-riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~-----------~~~~~~~----~~~~~~~~~~v~viG~G~aG 64 (81)
+|| ||||+ ||.+|+++ .++||+|+.+|+|+.+..+ ..+|.+. ..|.+.++++|+|||+||||
T Consensus 318 ~~G~RVCp~-CE~aC~r~-~dePV~I~~ler~i~d~~~~~~~~~e~y~~~~~~~~~~~~~~~~~~~tgKKVaVVGaGPAG 395 (1028)
T PRK06567 318 ATGHRICND-CSKACIYQ-KQDPVNIPLIESNILEETLKLPYGLEIYLLLTRWNPLNIYAPLPKEPTNYNILVTGLGPAG 395 (1028)
T ss_pred hhCCccCcc-hHHHhcCC-CCCCeehhHHHHHHhhhhhhhcccccccccccccccccccCCCCCCCCCCeEEEECcCHHH
Confidence 588 99995 99999999 8999999999999988532 2244321 12345678999999999999
Q ss_pred HHHHHHHhHcCCCeeeC
Q psy11001 65 LGAAHQLNKEAGTELIK 81 (81)
Q Consensus 65 ~~~A~~L~~~g~~v~v~ 81 (81)
+++|++|+++||+|+|.
T Consensus 396 LsAA~~La~~Gh~Vtv~ 412 (1028)
T PRK06567 396 FSLSYYLLRSGHNVTAI 412 (1028)
T ss_pred HHHHHHHHhCCCeEEEE
Confidence 99999999999999873
No 13
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.81 E-value=5.1e-20 Score=144.08 Aligned_cols=79 Identities=32% Similarity=0.447 Sum_probs=64.2
Q ss_pred CccccCcc--chHHHhhcCCCCCccchhhHHHHHHHhhHhhCC------CCCCCC-CccCCCcEEEECCCHHHHHHHHHH
Q psy11001 1 FTGRVCPA--PCEGACVLGINEPAVTIKNIECAIIDHAFEQGW------IKPEIP-TLRTGKKVAIVGSGPSGLGAAHQL 71 (81)
Q Consensus 1 ~~~riC~~--~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~------~~~~~~-~~~~~~~v~viG~G~aG~~~A~~L 71 (81)
||||+||| +||.+|+++ ++||+|+.+|+|+.++...... .....+ .+.++++|+|||||||||++|++|
T Consensus 248 ~~GrVCp~~~~CE~~C~~~--~~pV~I~~ler~i~d~~~~~~~~~~~~~~~~~~~~~~~~gkkVaVIGsGPAGLsaA~~L 325 (944)
T PRK12779 248 VTGRVCPQELQCQGVCTHT--KRPIEIGQLEWYLPQHEKLVNPNANERFAGRISPWAAAVKPPIAVVGSGPSGLINAYLL 325 (944)
T ss_pred HhcCcCCCccCHHHhccCC--CcCcchhHHHHHHHHHHHhhchhhhhcccccccccccCCCCeEEEECCCHHHHHHHHHH
Confidence 69999999 799999998 6799999999999997554321 110011 234679999999999999999999
Q ss_pred hHcCCCeeeC
Q psy11001 72 NKEAGTELIK 81 (81)
Q Consensus 72 ~~~g~~v~v~ 81 (81)
+++||+|+|.
T Consensus 326 ar~G~~VtVf 335 (944)
T PRK12779 326 AVEGFPVTVF 335 (944)
T ss_pred HHCCCeEEEE
Confidence 9999999873
No 14
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.80 E-value=2.1e-19 Score=137.52 Aligned_cols=80 Identities=39% Similarity=0.591 Sum_probs=68.6
Q ss_pred CccccCcc--chHHHhhcCCCC-CccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 1 FTGRVCPA--PCEGACVLGINE-PAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 1 ~~~riC~~--~C~~~C~~~~~~-~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
||||+||+ +|+++|++...+ +||+|..+|+++.+......+...+.+.+.+.++|+||||||||+++|.+|+++|++
T Consensus 377 ~~grvC~~~~~Ce~~c~~~~~~~~~v~i~~l~r~~~d~~~~~~~~~~~~~~~~~~~~V~IIGaGpAGl~aA~~l~~~G~~ 456 (752)
T PRK12778 377 VCGRVCPQEKQCESKCIHGKMGEEAVAIGYLERFVADYERESGNISVPEVAEKNGKKVAVIGSGPAGLSFAGDLAKRGYD 456 (752)
T ss_pred HhcCcCCCcCchHHhcccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCCCCCEEEEECcCHHHHHHHHHHHHCCCe
Confidence 69999997 899999999988 899999999999998766543322222345778999999999999999999999999
Q ss_pred eee
Q psy11001 78 ELI 80 (81)
Q Consensus 78 v~v 80 (81)
|+|
T Consensus 457 V~v 459 (752)
T PRK12778 457 VTV 459 (752)
T ss_pred EEE
Confidence 987
No 15
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.79 E-value=2.5e-19 Score=133.43 Aligned_cols=79 Identities=42% Similarity=0.724 Sum_probs=70.4
Q ss_pred CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
||||+||||||.+|+|+..+.+|.|..++++..++.....|..+. +....+++|+|||+||+|+++|.+|+++|++|+|
T Consensus 87 ~~grvc~~~ce~~C~r~~~~~~v~i~~l~r~~~~~~~~~~~~~~~-~~~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v 165 (564)
T PRK12771 87 VMGRVCYHPCESGCNRGQVDDAVGINAVERFLGDYAIANGWKFPA-PAPDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTI 165 (564)
T ss_pred HhhCcCCchhHHhccCCCCCCCcCHHHHHHHHHHHHHHcCCCCCC-CCCCCCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 699999999999999999999999999999999988877765432 2345678999999999999999999999999876
No 16
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.79 E-value=3.5e-19 Score=129.58 Aligned_cols=79 Identities=47% Similarity=0.820 Sum_probs=69.2
Q ss_pred CccccCccc--hHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001 1 FTGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE 78 (81)
Q Consensus 1 ~~~riC~~~--C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v 78 (81)
||||+|||+ |++.|+++..++|++|+.+++++.++.....+..+. +.+...++|+||||||+|+++|.+|+++|++|
T Consensus 88 ~~g~vc~~~~~C~~~C~~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~-~~~~~~~~VvIIGgGpaGl~aA~~l~~~g~~V 166 (457)
T PRK11749 88 VCGRVCPQERLCEGACVRGKKGEPVAIGRLERYITDWAMETGWVLFK-RAPKTGKKVAVIGAGPAGLTAAHRLARKGYDV 166 (457)
T ss_pred hhcCcCCCccCHHHHhcCCCCCCCcchHHHHHHHHHHHHhcCCCCCC-CCccCCCcEEEECCCHHHHHHHHHHHhCCCeE
Confidence 699999998 999999998899999999999999988877664222 23456789999999999999999999999999
Q ss_pred ee
Q psy11001 79 LI 80 (81)
Q Consensus 79 ~v 80 (81)
+|
T Consensus 167 ~l 168 (457)
T PRK11749 167 TI 168 (457)
T ss_pred EE
Confidence 87
No 17
>KOG0399|consensus
Probab=99.79 E-value=1.1e-19 Score=143.17 Aligned_cols=80 Identities=71% Similarity=1.244 Sum_probs=77.8
Q ss_pred CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++||+||+||+++|++|....||.|+.+|+.+.+..++++|..+.+|..+++++|+|||+|||||++|-.|-+.||.|+|
T Consensus 1734 ftgrvcpapcegactlgiie~pv~iksie~aiid~af~egwm~p~pp~~rtg~~vaiigsgpaglaaadqlnk~gh~v~v 1813 (2142)
T KOG0399|consen 1734 FTGRVCPAPCEGACTLGIIEPPVGIKSIECAIIDKAFEEGWMKPCPPAFRTGKRVAIIGSGPAGLAAADQLNKAGHTVTV 1813 (2142)
T ss_pred ccCccCCCCcCcceeeecccCCccccchhhHHHHHHHHhcCCccCCcccccCcEEEEEccCchhhhHHHHHhhcCcEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999987
No 18
>PRK13984 putative oxidoreductase; Provisional
Probab=99.77 E-value=7.8e-19 Score=131.43 Aligned_cols=80 Identities=33% Similarity=0.512 Sum_probs=68.5
Q ss_pred CccccCccchHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCC-CCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKP-EIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTEL 79 (81)
Q Consensus 1 ~~~riC~~~C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~ 79 (81)
||||+||++|+.+|+++..++|+.|+.+++++.+......+... ..+.+.+.++|+|||+|++|+++|..|+++|++|+
T Consensus 231 ~~g~vC~~~Ce~~C~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IIGaG~aGl~aA~~L~~~G~~v~ 310 (604)
T PRK13984 231 VCGRVCTHKCETVCSIGHRGEPIAIRWLKRYIVDNVPVEKYSEILDDEPEKKNKKVAIVGSGPAGLSAAYFLATMGYEVT 310 (604)
T ss_pred hhhCcCCchHHHhhcccCCCCCeEeCcHHHHHHhHHHHcCcccccCCCcccCCCeEEEECCCHHHHHHHHHHHHCCCeEE
Confidence 69999999999999999999999999999999998765554321 12234567899999999999999999999999998
Q ss_pred e
Q psy11001 80 I 80 (81)
Q Consensus 80 v 80 (81)
|
T Consensus 311 v 311 (604)
T PRK13984 311 V 311 (604)
T ss_pred E
Confidence 7
No 19
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.75 E-value=1.4e-18 Score=127.71 Aligned_cols=80 Identities=54% Similarity=0.920 Sum_probs=74.9
Q ss_pred CccccCccc--hHHHhhcCCCCCccchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001 1 FTGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE 78 (81)
Q Consensus 1 ~~~riC~~~--C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v 78 (81)
+|||+||++ |+.+|++...+.|+.|+.+++++.+......|.+..++...+.++|+||||||||+++|..|++.||.|
T Consensus 70 ~~gRvcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~~~~tg~~VaviGaGPAGl~~a~~L~~~G~~V 149 (457)
T COG0493 70 ITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRTGKKVAVIGAGPAGLAAADDLSRAGHDV 149 (457)
T ss_pred ccCccCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCCCCCCCCEEEEECCCchHhhhHHHHHhCCCeE
Confidence 699999986 999999998899999999999999999999998877666777899999999999999999999999999
Q ss_pred ee
Q psy11001 79 LI 80 (81)
Q Consensus 79 ~v 80 (81)
++
T Consensus 150 tv 151 (457)
T COG0493 150 TV 151 (457)
T ss_pred EE
Confidence 97
No 20
>PF14691 Fer4_20: Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster; PDB: 2VDC_G 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B.
Probab=99.08 E-value=3.2e-11 Score=74.37 Aligned_cols=40 Identities=50% Similarity=1.002 Sum_probs=30.6
Q ss_pred CccccCccc--hHHHhhcCCCCCccchhhHHHHHHHhhHhhCC
Q psy11001 1 FTGRVCPAP--CEGACVLGINEPAVTIKNIECAIIDHAFEQGW 41 (81)
Q Consensus 1 ~~~riC~~~--C~~~C~~~~~~~~i~i~~l~~~~~~~~~~~~~ 41 (81)
||||+||++ ||.+|+++ .++||+|+.|++|+.++..+++|
T Consensus 70 vcGrvCp~p~~Ce~~C~r~-~~~pV~I~~l~r~~~d~~~~~~~ 111 (111)
T PF14691_consen 70 VCGRVCPHPKQCESACRRG-KGEPVAIRALERFIADYALEEGW 111 (111)
T ss_dssp HHHHH--GGGSGGGG-GGG-ST-S--HHHHHHHHHHHHHHHT-
T ss_pred cccCCCCCcchHHHHccCC-CCCCCcHHHHHHHHHHHHHHcCC
Confidence 589999998 99999999 44999999999999999999887
No 21
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.56 E-value=9.3e-08 Score=65.74 Aligned_cols=51 Identities=37% Similarity=0.356 Sum_probs=38.1
Q ss_pred cchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 23 VTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 23 i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+....+-+++.+..++.-. ....-+|+|+|+|||||+||++|+++|++|.|
T Consensus 8 ~~E~~itraI~~~~~~~l~-------~~~esDViIVGaGPsGLtAAyyLAk~g~kV~i 58 (262)
T COG1635 8 LREVKITRAITERYFEDLL-------DYLESDVIIVGAGPSGLTAAYYLAKAGLKVAI 58 (262)
T ss_pred hhhHHHHHHHHHHHHHHHH-------hhhhccEEEECcCcchHHHHHHHHhCCceEEE
Confidence 3334455667766665431 12345899999999999999999999999987
No 22
>KOG0029|consensus
Probab=98.55 E-value=9.2e-08 Score=71.53 Aligned_cols=33 Identities=36% Similarity=0.465 Sum_probs=30.0
Q ss_pred CccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 48 TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 48 ~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+.++|+|||||+|||+||.+|.+.|++|+|
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~V 43 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLV 43 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHcCCceEE
Confidence 345678999999999999999999999999987
No 23
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.52 E-value=8.2e-08 Score=65.89 Aligned_cols=28 Identities=46% Similarity=0.615 Sum_probs=24.7
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|+||||||+|+++|..|+++|++|+|
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~v~i 29 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGIDVTI 29 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHhccccccc
Confidence 4799999999999999999999999987
No 24
>PLN02487 zeta-carotene desaturase
Probab=98.51 E-value=2.5e-07 Score=70.13 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=42.2
Q ss_pred hHHHHHHHhhHhh--CCCCCCCCCcc--CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 27 NIECAIIDHAFEQ--GWIKPEIPTLR--TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 27 ~l~~~~~~~~~~~--~~~~~~~~~~~--~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|+++.+..... .|.++.+ ... +.++|+|||+|++|+++|++|+++|++|+|
T Consensus 47 ~l~r~~~d~~~~~~~~~~~~~~-~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i 103 (569)
T PLN02487 47 SLDSNVSDMSVNAPKGLFPPEP-EAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDI 103 (569)
T ss_pred HHHHHhhhhhccccccccCCCC-cccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEE
Confidence 7889999888766 5554332 222 345999999999999999999999999987
No 25
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.51 E-value=2.4e-07 Score=63.82 Aligned_cols=47 Identities=40% Similarity=0.463 Sum_probs=35.8
Q ss_pred hHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 27 NIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 27 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+-+.+.+..++.- . ....++|+|||+||||+++|++|++.|++|+|
T Consensus 7 ~~~~~~~~~~~~~~-~------~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~l 53 (257)
T PRK04176 7 KITRAIVEEYFEKL-L------DYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAV 53 (257)
T ss_pred HHHHHHHHHHHHHH-H------HhccCCEEEECccHHHHHHHHHHHhCCCeEEE
Confidence 45566666655432 1 12347899999999999999999999999987
No 26
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.50 E-value=1.3e-07 Score=53.25 Aligned_cols=24 Identities=42% Similarity=0.502 Sum_probs=22.1
Q ss_pred EECCCHHHHHHHHHHhHcCCCeee
Q psy11001 57 IVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 57 viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
|||+|++|+++|+.|+++|++|+|
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v 24 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTV 24 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEE
Confidence 899999999999999999999987
No 27
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.47 E-value=1.7e-07 Score=66.92 Aligned_cols=28 Identities=36% Similarity=0.609 Sum_probs=26.5
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+||||||||+++|+.|++.|++|+|
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l 28 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETIL 28 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 4799999999999999999999999987
No 28
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.46 E-value=1.8e-07 Score=67.29 Aligned_cols=29 Identities=41% Similarity=0.593 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||+||||++||+.|+++|++|+|
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~~G~~Vlv 31 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAKAGLDVLV 31 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHHcCCeEEE
Confidence 47899999999999999999999999987
No 29
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.45 E-value=1.6e-07 Score=64.10 Aligned_cols=30 Identities=43% Similarity=0.512 Sum_probs=24.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++|+|||+||||+++|++|+++|++|.|
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~g~kV~v 45 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKAGLKVAV 45 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHHTS-EEE
T ss_pred ccCCEEEECCChhHHHHHHHHHHCCCeEEE
Confidence 347899999999999999999999999987
No 30
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.45 E-value=2.9e-07 Score=68.72 Aligned_cols=33 Identities=33% Similarity=0.435 Sum_probs=29.0
Q ss_pred ccCCCcEEEECCCHHHHHHHHHHhH--cCCCeeeC
Q psy11001 49 LRTGKKVAIVGSGPSGLGAAHQLNK--EAGTELIK 81 (81)
Q Consensus 49 ~~~~~~v~viG~G~aG~~~A~~L~~--~g~~v~v~ 81 (81)
....++|+||||||||+++|.+|++ .|++|+|.
T Consensus 23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~ 57 (491)
T PLN02852 23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDII 57 (491)
T ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEE
Confidence 3456899999999999999999997 79999873
No 31
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.45 E-value=3.2e-07 Score=67.55 Aligned_cols=32 Identities=31% Similarity=0.478 Sum_probs=29.1
Q ss_pred ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
....++|+||||||||+++|+.|+++|++|+|
T Consensus 36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~Vll 67 (450)
T PLN00093 36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFL 67 (450)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 34568999999999999999999999999986
No 32
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.43 E-value=2.8e-07 Score=65.79 Aligned_cols=29 Identities=34% Similarity=0.352 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+||||||+|+++|..|+++|++|+|
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v 46 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIAL 46 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEE
Confidence 57999999999999999999999999987
No 33
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.42 E-value=2.7e-07 Score=66.21 Aligned_cols=28 Identities=46% Similarity=0.671 Sum_probs=25.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v 80 (81)
++|+|||||+|||+||+.|++.| ++|+|
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~v 30 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITL 30 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEE
Confidence 47999999999999999999988 88887
No 34
>PRK07233 hypothetical protein; Provisional
Probab=98.42 E-value=2.7e-07 Score=65.74 Aligned_cols=27 Identities=44% Similarity=0.613 Sum_probs=25.9
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||||+|||++|++|+++|++|+|
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~v 27 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTV 27 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 689999999999999999999999987
No 35
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.42 E-value=5.4e-07 Score=62.06 Aligned_cols=30 Identities=43% Similarity=0.541 Sum_probs=27.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++|+|||+||||+++|+.|+++|++|+|
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~G~~V~v 49 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKNGLKVCV 49 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 357899999999999999999999999887
No 36
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.41 E-value=3.3e-07 Score=61.89 Aligned_cols=28 Identities=36% Similarity=0.566 Sum_probs=26.4
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||++|+++|+.|+++|++|+|
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~v 28 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADKGLRVLL 28 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 4799999999999999999999999987
No 37
>PRK10262 thioredoxin reductase; Provisional
Probab=98.40 E-value=4.1e-07 Score=63.38 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=27.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++|+|||+||||+++|..|+++|+++++
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ 34 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVL 34 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEE
Confidence 457899999999999999999999998875
No 38
>PRK07045 putative monooxygenase; Reviewed
Probab=98.39 E-value=3.4e-07 Score=65.11 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+||||||+|+++|..|+++|++|+|
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v 33 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTV 33 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEE
Confidence 46899999999999999999999999987
No 39
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.39 E-value=4e-07 Score=65.24 Aligned_cols=29 Identities=31% Similarity=0.345 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||++|+++|..|+++|++|+|
T Consensus 2 ~~~V~IvGgGiaGl~~A~~L~~~G~~V~i 30 (400)
T PRK06475 2 RGSPLIAGAGVAGLSAALELAARGWAVTI 30 (400)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 37899999999999999999999999987
No 40
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.39 E-value=3.5e-07 Score=62.84 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=25.9
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||+|++|+++|++|+++|++|+|
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~~V~l 27 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGHSVTL 27 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence 589999999999999999999999987
No 41
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.38 E-value=4.1e-07 Score=66.25 Aligned_cols=29 Identities=34% Similarity=0.361 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+||||||||+++|+.|+++|++|+|
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~G~~V~l 33 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAREGAQVLV 33 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence 47999999999999999999999999987
No 42
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.38 E-value=3.5e-07 Score=67.73 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=27.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||+.||++|..|+++|++|+|
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~V 31 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTV 31 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEE
Confidence 47899999999999999999999999987
No 43
>PRK06847 hypothetical protein; Provisional
Probab=98.38 E-value=4.7e-07 Score=63.80 Aligned_cols=29 Identities=41% Similarity=0.438 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||++|+++|..|++.|++|+|
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v 32 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDL 32 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 46899999999999999999999999987
No 44
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.37 E-value=4.8e-07 Score=61.42 Aligned_cols=28 Identities=39% Similarity=0.548 Sum_probs=26.4
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||+||+++|..|+++|++|+|
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~l 28 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLI 28 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence 4799999999999999999999999986
No 45
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.37 E-value=4.3e-07 Score=65.54 Aligned_cols=28 Identities=36% Similarity=0.604 Sum_probs=26.4
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|+||||||||+++|+.|+++|++|+|
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~l 28 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFL 28 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEE
Confidence 4799999999999999999999999987
No 46
>PRK07236 hypothetical protein; Provisional
Probab=98.37 E-value=5e-07 Score=64.37 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||||++|+++|..|+++|++|+|
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v 34 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDV 34 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 47899999999999999999999999987
No 47
>PRK09126 hypothetical protein; Provisional
Probab=98.37 E-value=4.3e-07 Score=64.40 Aligned_cols=28 Identities=29% Similarity=0.522 Sum_probs=26.9
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+||||||+|+++|..|+++|++|+|
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v 31 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTL 31 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence 6899999999999999999999999987
No 48
>PRK10015 oxidoreductase; Provisional
Probab=98.37 E-value=4.6e-07 Score=66.09 Aligned_cols=29 Identities=24% Similarity=0.284 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+||||||||+++|+.|+++|++|+|
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~G~~Vll 33 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARAGLDVLV 33 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence 47999999999999999999999999987
No 49
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.36 E-value=4.4e-07 Score=64.62 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=27.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+||||||+|+++|+.|+++|++|+|
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~l 34 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVAL 34 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEE
Confidence 357899999999999999999999999987
No 50
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.36 E-value=5.2e-07 Score=64.32 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=26.9
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+||||||+|+++|..|+++|++|+|
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l 31 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAV 31 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence 5899999999999999999999999987
No 51
>PRK06753 hypothetical protein; Provisional
Probab=98.35 E-value=4.9e-07 Score=63.74 Aligned_cols=27 Identities=37% Similarity=0.562 Sum_probs=26.0
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||||++|+++|..|+++|++|+|
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v 28 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKV 28 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 699999999999999999999999987
No 52
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.35 E-value=4.4e-07 Score=64.89 Aligned_cols=28 Identities=29% Similarity=0.332 Sum_probs=26.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||++|+++|+.|+++|++|+|
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v 30 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSGLEVLL 30 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCCCEEEE
Confidence 6899999999999999999999999987
No 53
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.35 E-value=5.2e-07 Score=63.83 Aligned_cols=29 Identities=24% Similarity=0.258 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+||||||+|+++|+.|++.|++|+|
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v 33 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVAL 33 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence 46899999999999999999999999987
No 54
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.35 E-value=4.3e-07 Score=63.79 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=25.8
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+||||||+|+++|+.|+++|++|+|
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G~~v~v 27 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSGLKIAL 27 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCCCEEEE
Confidence 589999999999999999999999987
No 55
>PRK07208 hypothetical protein; Provisional
Probab=98.34 E-value=6e-07 Score=65.50 Aligned_cols=29 Identities=41% Similarity=0.583 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||+|||++|++|+++|++|+|
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v 32 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTV 32 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999999999999987
No 56
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.34 E-value=6.4e-07 Score=63.62 Aligned_cols=29 Identities=34% Similarity=0.392 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||||++|+++|..|++.|++|+|
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v 32 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKL 32 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEE
Confidence 46899999999999999999999999987
No 57
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.34 E-value=6e-07 Score=57.93 Aligned_cols=27 Identities=44% Similarity=0.767 Sum_probs=25.6
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||||+||+++|.+|++.|+++++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~i 27 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLI 27 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEE
Confidence 689999999999999999999999886
No 58
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.34 E-value=4.8e-07 Score=66.18 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=22.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||||||.||+.|+++|++|+|
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~g~~V~v 28 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEKGARVLV 28 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHTT--EEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 5899999999999999999999999987
No 59
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.34 E-value=5.2e-07 Score=64.05 Aligned_cols=30 Identities=27% Similarity=0.320 Sum_probs=27.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++|+|||||++|+++|..|+++|++|+|
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~l 33 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQHGFSVAV 33 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcCCCEEEE
Confidence 347999999999999999999999999987
No 60
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.33 E-value=7.1e-07 Score=65.98 Aligned_cols=31 Identities=35% Similarity=0.623 Sum_probs=28.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+|||||+|||++|.+|++.|++|+|
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~v 38 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVV 38 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEE
Confidence 3468999999999999999999999999887
No 61
>PRK08013 oxidoreductase; Provisional
Probab=98.33 E-value=6.2e-07 Score=64.34 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=27.2
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
++|+||||||+|+++|+.|+++|++|+|.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~vi 32 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVL 32 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEE
Confidence 68999999999999999999999999873
No 62
>PLN02268 probable polyamine oxidase
Probab=98.32 E-value=6.1e-07 Score=64.77 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=26.4
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||.|||+||+.|.++|++|+|
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~v 28 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTL 28 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 4799999999999999999999999887
No 63
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.32 E-value=7e-07 Score=64.08 Aligned_cols=28 Identities=43% Similarity=0.653 Sum_probs=26.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|+||||||+|+++|..|+++|++|+|
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v 30 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVI 30 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEE
Confidence 6899999999999999999999999987
No 64
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.31 E-value=6.7e-07 Score=63.29 Aligned_cols=29 Identities=28% Similarity=0.283 Sum_probs=27.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHc---CCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKE---AGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~---g~~v~v 80 (81)
..+|+||||||+|+++|+.|+++ |++|+|
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v 34 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVAL 34 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEE
Confidence 36899999999999999999998 999987
No 65
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.31 E-value=1.5e-06 Score=64.59 Aligned_cols=30 Identities=30% Similarity=0.360 Sum_probs=28.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++||||||||+++|.+|++.|++|+|
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~l 239 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGI 239 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 457999999999999999999999999986
No 66
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.30 E-value=8e-07 Score=62.62 Aligned_cols=28 Identities=36% Similarity=0.404 Sum_probs=26.4
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||.+|+++|++|+++|++|+|
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~g~~V~l 28 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKHGKKTLL 28 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 4799999999999999999999999987
No 67
>PRK06126 hypothetical protein; Provisional
Probab=98.30 E-value=9.3e-07 Score=65.73 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=27.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
..+|+||||||+|+++|..|+++|++|+|.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~vi 36 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGRRGVDSILV 36 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEE
Confidence 478999999999999999999999999873
No 68
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.29 E-value=9e-07 Score=63.41 Aligned_cols=30 Identities=37% Similarity=0.460 Sum_probs=27.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
..+|+||||||+|+++|..|++.|++|+|.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~ 31 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARAGLDVTLL 31 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhCCCcEEEE
Confidence 368999999999999999999999999873
No 69
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.29 E-value=9.5e-07 Score=65.72 Aligned_cols=31 Identities=26% Similarity=0.344 Sum_probs=28.6
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+||||||||+++|.+|++.|++|+|
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~l 240 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAM 240 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 3458999999999999999999999999986
No 70
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.29 E-value=6.5e-07 Score=63.22 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=25.7
Q ss_pred cEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEA-GTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g-~~v~v 80 (81)
+|+||||||+|+++|..|+++| ++|+|
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v 28 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIAL 28 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEE
Confidence 5899999999999999999999 99987
No 71
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.29 E-value=8.8e-07 Score=63.31 Aligned_cols=28 Identities=32% Similarity=0.558 Sum_probs=26.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|+|||+||+|+++|..|+++|++|+|
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v 30 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVV 30 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEE
Confidence 6799999999999999999999999987
No 72
>PRK07588 hypothetical protein; Provisional
Probab=98.29 E-value=9.1e-07 Score=63.00 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=26.0
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||||++|+++|..|+++|++|+|
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v 28 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTL 28 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEE
Confidence 799999999999999999999999987
No 73
>PRK06184 hypothetical protein; Provisional
Probab=98.29 E-value=9.7e-07 Score=65.12 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+||||||+|+++|..|+++|++|+|
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~v 31 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRL 31 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 36899999999999999999999999987
No 74
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.28 E-value=9.6e-07 Score=62.16 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=27.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|||+|.+|+++|++|+++|++|++
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~~V~v 32 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTV 32 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence 357999999999999999999999998886
No 75
>PLN02576 protoporphyrinogen oxidase
Probab=98.28 E-value=1.1e-06 Score=64.39 Aligned_cols=30 Identities=43% Similarity=0.601 Sum_probs=27.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKE-AGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~-g~~v~v 80 (81)
..++|+|||||+|||++|++|+++ |++|+|
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~v 41 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLV 41 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEE
Confidence 346899999999999999999999 999987
No 76
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.28 E-value=1e-06 Score=66.11 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+||||||||+++|.+|+++|++|+|
T Consensus 4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~l 32 (555)
T TIGR03143 4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLI 32 (555)
T ss_pred cCcEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence 47999999999999999999999999987
No 77
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.28 E-value=9.1e-07 Score=62.76 Aligned_cols=29 Identities=31% Similarity=0.636 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||+|++|+++|+.|+++|++|+|
T Consensus 7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~l 35 (388)
T PRK07494 7 HTDIAVIGGGPAGLAAAIALARAGASVAL 35 (388)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCCCeEEE
Confidence 46899999999999999999999999987
No 78
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=9.8e-07 Score=62.43 Aligned_cols=29 Identities=38% Similarity=0.458 Sum_probs=26.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGT-ELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~-v~v 80 (81)
.++|+||||||||++||.+++|.|++ ++|
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r~~l~~~li 32 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAARAGLKVVLI 32 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence 47899999999999999999999988 443
No 79
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.27 E-value=9.7e-07 Score=63.28 Aligned_cols=30 Identities=30% Similarity=0.357 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
.++|+||||||+|+++|..|+++|++|+|.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~vi 33 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKESDLRIAVI 33 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCEEEEE
Confidence 368999999999999999999999999873
No 80
>PLN02463 lycopene beta cyclase
Probab=98.27 E-value=1.5e-06 Score=64.12 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=28.9
Q ss_pred ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
....++|+||||||||+++|..|+++|++|.|
T Consensus 25 ~~~~~DVvIVGaGpAGLalA~~La~~Gl~V~l 56 (447)
T PLN02463 25 KSRVVDLVVVGGGPAGLAVAQQVSEAGLSVCC 56 (447)
T ss_pred cccCceEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 34457999999999999999999999999987
No 81
>PRK08244 hypothetical protein; Provisional
Probab=98.26 E-value=1.1e-06 Score=64.55 Aligned_cols=28 Identities=32% Similarity=0.468 Sum_probs=26.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+||||||+|+++|..|+++|++|+|
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~v 30 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAGVKTCV 30 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 6899999999999999999999999987
No 82
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.26 E-value=1.1e-06 Score=61.77 Aligned_cols=29 Identities=24% Similarity=0.239 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||++|+++|++|+++|++|+|
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~~V~l 31 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGLRVLG 31 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 36899999999999999999999999987
No 83
>PRK07538 hypothetical protein; Provisional
Probab=98.25 E-value=1.1e-06 Score=63.12 Aligned_cols=27 Identities=33% Similarity=0.442 Sum_probs=26.0
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||||++|+++|+.|+++|++|+|
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v 28 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVV 28 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 699999999999999999999999987
No 84
>PRK06185 hypothetical protein; Provisional
Probab=98.25 E-value=1.3e-06 Score=62.35 Aligned_cols=29 Identities=24% Similarity=0.402 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||++|+++|+.|++.|++|+|
T Consensus 6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~l 34 (407)
T PRK06185 6 TTDCCIVGGGPAGMMLGLLLARAGVDVTV 34 (407)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 47899999999999999999999999987
No 85
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.25 E-value=1.3e-06 Score=64.24 Aligned_cols=28 Identities=32% Similarity=0.451 Sum_probs=26.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||++||++|..|+++|++|+|
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~v 29 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTL 29 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence 5799999999999999999999999987
No 86
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.24 E-value=1.3e-06 Score=62.62 Aligned_cols=28 Identities=21% Similarity=0.424 Sum_probs=26.7
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||.+|+++|++|++.|++|+|
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~v 29 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVTV 29 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 5899999999999999999999999987
No 87
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.24 E-value=1.1e-06 Score=62.47 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=26.9
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
.+|+||||||+|+++|..|++.|++|+|.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~ 30 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKGIKTTIF 30 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCCCeEEEe
Confidence 47999999999999999999999999873
No 88
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.24 E-value=1.4e-06 Score=63.10 Aligned_cols=28 Identities=46% Similarity=0.529 Sum_probs=26.6
Q ss_pred CcEEEECCCHHHHHHHHHHhHc----CCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKE----AGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~----g~~v~v 80 (81)
++|+|||||+|||++|++|+++ |++|+|
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~v 34 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTL 34 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEE
Confidence 5899999999999999999999 999987
No 89
>PRK06116 glutathione reductase; Validated
Probab=98.23 E-value=1.5e-06 Score=63.24 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++||||||+|+++|..|+++|++|+|
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~~G~~V~l 32 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAMYGAKVAL 32 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 47899999999999999999999999987
No 90
>PRK05868 hypothetical protein; Validated
Probab=98.23 E-value=1.5e-06 Score=62.14 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=26.7
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||++|+++|+.|+++|++|+|
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~v 29 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTM 29 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 4799999999999999999999999987
No 91
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.22 E-value=1.7e-06 Score=63.18 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=28.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++||||||||+++|..|+++|++|.|
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~l 32 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAI 32 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 458999999999999999999999999987
No 92
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.22 E-value=1.5e-06 Score=63.11 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+||||||||+++|..|++.|++|+|
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~l 31 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASAGKKVAL 31 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 47899999999999999999999999987
No 93
>PLN02612 phytoene desaturase
Probab=98.22 E-value=3.4e-06 Score=63.64 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=29.6
Q ss_pred CccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 48 TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 48 ~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+...++|+|||+|++|+++|++|+++|++|+|
T Consensus 89 ~~~~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~ 121 (567)
T PLN02612 89 RPAKPLKVVIAGAGLAGLSTAKYLADAGHKPIL 121 (567)
T ss_pred CCCCCCCEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 345568999999999999999999999999886
No 94
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.22 E-value=1.5e-06 Score=63.60 Aligned_cols=30 Identities=17% Similarity=0.413 Sum_probs=27.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
.++|+|||+||+|+++|..|+++|++|+|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~li 31 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEHGAKALLV 31 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEe
Confidence 479999999999999999999999999873
No 95
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.21 E-value=1.7e-06 Score=62.90 Aligned_cols=29 Identities=24% Similarity=0.255 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+||||||+|+++|..|+++|++|+|
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~l 31 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKAGWRVAL 31 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHCCCeEEE
Confidence 37999999999999999999999999887
No 96
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1.4e-06 Score=65.02 Aligned_cols=28 Identities=36% Similarity=0.477 Sum_probs=26.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+||+|+|||.|||+||++|+.+||+|+|
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~ 28 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTL 28 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEE
Confidence 4799999999999999999999999987
No 97
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.20 E-value=1.8e-06 Score=62.99 Aligned_cols=29 Identities=21% Similarity=0.371 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+||+|+++|..++++|++|+|
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~l 30 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANHGAKVAI 30 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 47899999999999999999999999987
No 98
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.20 E-value=1.7e-06 Score=62.86 Aligned_cols=27 Identities=37% Similarity=0.614 Sum_probs=25.7
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||+|+||+++|++|.++|++|+|
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~v 27 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIV 27 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999999999987
No 99
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.20 E-value=1.8e-06 Score=60.78 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=26.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||.+|+++|++|+++|++|+|
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~G~~V~v 28 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARRGLSVTV 28 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 3799999999999999999999999987
No 100
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.20 E-value=1.4e-06 Score=64.09 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=25.0
Q ss_pred EEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 55 VAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 55 v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
|+|||||.+||+||..|+++|++|+|
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~V 26 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTV 26 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEE
Confidence 68999999999999999999999987
No 101
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=98.18 E-value=2e-06 Score=63.54 Aligned_cols=28 Identities=36% Similarity=0.455 Sum_probs=26.7
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|+|||||++|+.+|+.|+++|++|+|
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~L 30 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVEL 30 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 5899999999999999999999999987
No 102
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.18 E-value=1.9e-06 Score=61.13 Aligned_cols=28 Identities=29% Similarity=0.533 Sum_probs=26.0
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
+|+|||||+||+++|+.|++.|++|+|.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~li 28 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLI 28 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 5899999999999999999999999873
No 103
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.18 E-value=2.5e-06 Score=64.00 Aligned_cols=31 Identities=35% Similarity=0.385 Sum_probs=26.8
Q ss_pred cCCCcEEEECCCHHHHHHHHHHh-HcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLN-KEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~-~~g~~v~v 80 (81)
...++|+||||||||+.+|.+|+ +.|++|+|
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~~g~~Vtl 68 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKHERVKVDI 68 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhcCCeEEE
Confidence 35679999999999999999765 67999887
No 104
>PRK06834 hypothetical protein; Provisional
Probab=98.17 E-value=2.4e-06 Score=63.38 Aligned_cols=29 Identities=34% Similarity=0.438 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+||+|+++|..|+++|++|+|
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~v 31 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALAGVDVAI 31 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 47899999999999999999999999987
No 105
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.17 E-value=1.8e-06 Score=61.39 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=25.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v 80 (81)
++|+||||||+|+++|..|++.| ++|+|
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~l 31 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTV 31 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEE
Confidence 57999999999999999999996 88876
No 106
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.17 E-value=2.4e-06 Score=62.65 Aligned_cols=30 Identities=23% Similarity=0.349 Sum_probs=27.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++||||||+|+++|..|+++|++|.|
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~l 32 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTAL 32 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 358999999999999999999999999986
No 107
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.16 E-value=2.9e-06 Score=63.25 Aligned_cols=30 Identities=30% Similarity=0.539 Sum_probs=28.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|||+||+|+++|..|++.|++|+|
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~v 51 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVL 51 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 457999999999999999999999999987
No 108
>PLN02985 squalene monooxygenase
Probab=98.16 E-value=3e-06 Score=63.37 Aligned_cols=32 Identities=28% Similarity=0.340 Sum_probs=29.0
Q ss_pred ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
....++|+|||||++|+++|..|+++|++|+|
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~v 71 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHV 71 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 34567999999999999999999999999987
No 109
>PLN02697 lycopene epsilon cyclase
Probab=98.15 E-value=3.6e-06 Score=63.41 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=27.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++|+|||+||||+++|..|+++|++|.+
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~L 136 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKLGLNVGL 136 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCCCcEEE
Confidence 357999999999999999999999999986
No 110
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.15 E-value=2.8e-06 Score=62.44 Aligned_cols=28 Identities=29% Similarity=0.378 Sum_probs=27.0
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++++|||+||+|+++|..++++|++|+|
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G~~V~l 31 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLGLKVAC 31 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 7899999999999999999999999987
No 111
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.14 E-value=2.7e-06 Score=61.91 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=26.7
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+||||||+|+++|..|+++|++|.|
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~G~~v~l 29 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQLGLKVAL 29 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 6899999999999999999999999976
No 112
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.14 E-value=2.7e-06 Score=61.97 Aligned_cols=29 Identities=34% Similarity=0.523 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+||||||+|+++|.+|++.|++|++
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G~~v~l 33 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLGKRVAV 33 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 47899999999999999999999999986
No 113
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.13 E-value=3.2e-06 Score=64.49 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||||.+|+++|++|+++|++|+|
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~G~~V~V 288 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARRGWQVTL 288 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCeEEE
Confidence 35899999999999999999999999987
No 114
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.13 E-value=2.8e-06 Score=62.21 Aligned_cols=30 Identities=37% Similarity=0.467 Sum_probs=27.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
.++|+|||+|||||.+|..+++.|++|+|.
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~G~~V~li 32 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKAGRRVLLI 32 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhcCCEEEEE
Confidence 468999999999999999999999999873
No 115
>KOG1399|consensus
Probab=98.13 E-value=2.8e-06 Score=62.94 Aligned_cols=29 Identities=41% Similarity=0.765 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||||+|||++|..|.+.|+++++
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~v 34 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREGHEVVV 34 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCCCCceE
Confidence 57999999999999999999999999987
No 116
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.13 E-value=2.4e-06 Score=62.11 Aligned_cols=28 Identities=39% Similarity=0.552 Sum_probs=26.1
Q ss_pred CcEEEECCCHHHHHHHHHHhH----cCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNK----EAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~----~g~~v~v 80 (81)
++|+||||||+|+++|+.|++ +|++|+|
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~v 32 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLL 32 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEE
Confidence 479999999999999999999 8999987
No 117
>PRK07190 hypothetical protein; Provisional
Probab=98.12 E-value=3.5e-06 Score=62.55 Aligned_cols=29 Identities=31% Similarity=0.329 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+||||||+|+++|..|+++|.+|.|
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~Gi~V~l 33 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLCGLNTVI 33 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 36899999999999999999999999886
No 118
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=98.12 E-value=3.3e-06 Score=65.20 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=28.6
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+..+|+|||||++|+++|..|+++|++|+|
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V 109 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLV 109 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 3457999999999999999999999999987
No 119
>PRK06370 mercuric reductase; Validated
Probab=98.12 E-value=3.2e-06 Score=61.85 Aligned_cols=29 Identities=14% Similarity=0.164 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+||+|+++|..|++.|++|+|
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G~~v~l 33 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLGMKVAL 33 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 47999999999999999999999999986
No 120
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.11 E-value=3.2e-06 Score=60.41 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=25.9
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||||.+|+++|++|+++|++|+|
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~g~~V~v 28 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQAGHEVTV 28 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence 699999999999999999999999987
No 121
>PRK14694 putative mercuric reductase; Provisional
Probab=98.11 E-value=4.1e-06 Score=61.49 Aligned_cols=31 Identities=23% Similarity=0.392 Sum_probs=28.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++++||||||+|+++|..|++.|++|.|
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~~~g~~v~l 34 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKATERGARVTL 34 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 3468999999999999999999999999886
No 122
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.11 E-value=3.5e-06 Score=62.10 Aligned_cols=28 Identities=32% Similarity=0.469 Sum_probs=26.4
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||.+|+++|.+|+++|++|+|
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~v 28 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLV 28 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEE
Confidence 3699999999999999999999999987
No 123
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=98.10 E-value=3.6e-06 Score=60.50 Aligned_cols=27 Identities=33% Similarity=0.481 Sum_probs=25.2
Q ss_pred cEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEA-GTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g-~~v~v 80 (81)
+|+|||||++|+++|..|+++| ++|+|
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v 29 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQL 29 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEE
Confidence 7999999999999999999998 48887
No 124
>PRK11445 putative oxidoreductase; Provisional
Probab=98.10 E-value=3.3e-06 Score=59.80 Aligned_cols=27 Identities=33% Similarity=0.455 Sum_probs=25.4
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||+||||+++|..|+++ ++|+|
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~l 28 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIA 28 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEE
Confidence 5899999999999999999999 99886
No 125
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=98.10 E-value=3.4e-06 Score=61.39 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=24.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcC------CCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEA------GTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g------~~v~v 80 (81)
++|+|||||+|||+||++|++.| ++|+|
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~v 35 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLIL 35 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEE
Confidence 47999999999999999999863 77876
No 126
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.10 E-value=4.1e-06 Score=61.39 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+||+|+++|..|+++|++|+|
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~l 32 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAV 32 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 37999999999999999999999999986
No 127
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.09 E-value=4.4e-06 Score=62.23 Aligned_cols=31 Identities=35% Similarity=0.509 Sum_probs=28.4
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+|||+||+|+++|..|+++|++|+|
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v 38 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQYGVRVLV 38 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 3457999999999999999999999999987
No 128
>PTZ00367 squalene epoxidase; Provisional
Probab=98.09 E-value=7.8e-06 Score=62.00 Aligned_cols=32 Identities=28% Similarity=0.286 Sum_probs=29.0
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
+..++|+|||||++|+++|..|+++|++|+|.
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar~G~~V~Vl 62 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSKQGRKVLML 62 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHhcCCEEEEE
Confidence 34679999999999999999999999999873
No 129
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.08 E-value=4.1e-06 Score=59.89 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=26.5
Q ss_pred CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
.+|+|||||.+|+++|++|+++ |++|+|
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~l 32 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAV 32 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEE
Confidence 5899999999999999999999 999987
No 130
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.07 E-value=6.4e-06 Score=58.35 Aligned_cols=31 Identities=48% Similarity=0.614 Sum_probs=28.6
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+|||+|++|+++|.+|+++|++|++
T Consensus 16 ~~~~~VvIIG~G~aGl~aA~~l~~~g~~v~l 46 (352)
T PRK12770 16 PTGKKVAIIGAGPAGLAAAGYLACLGYEVHV 46 (352)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence 4567999999999999999999999999886
No 131
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.07 E-value=4.7e-06 Score=60.88 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=26.5
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++++||||||+|+++|..|+++|++|+|
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~l 28 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAM 28 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 4799999999999999999999999986
No 132
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.06 E-value=6.4e-06 Score=58.95 Aligned_cols=33 Identities=33% Similarity=0.372 Sum_probs=28.2
Q ss_pred CccCCCcEEEECCCHHHHHHHHHHhHc-CC-Ceee
Q psy11001 48 TLRTGKKVAIVGSGPSGLGAAHQLNKE-AG-TELI 80 (81)
Q Consensus 48 ~~~~~~~v~viG~G~aG~~~A~~L~~~-g~-~v~v 80 (81)
.....++|+|||||.+|+++|++|+++ |+ +|+|
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~v 60 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAV 60 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEE
Confidence 344568999999999999999999995 95 7876
No 133
>KOG2614|consensus
Probab=98.06 E-value=5.2e-06 Score=60.95 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||||.+|+++|.+|.|+|++|+|
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~V 30 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVV 30 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 36899999999999999999999999987
No 134
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.05 E-value=5.9e-06 Score=65.81 Aligned_cols=30 Identities=30% Similarity=0.535 Sum_probs=27.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++|+|||||||||+||..|++.|++|+|
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~l 191 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARAGARVIL 191 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 357999999999999999999999999987
No 135
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.04 E-value=5.8e-06 Score=60.24 Aligned_cols=28 Identities=29% Similarity=0.459 Sum_probs=26.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++++||||||+|+++|..|++.|++|.|
T Consensus 4 yDvvIIG~G~aGl~aA~~l~~~g~~v~l 31 (460)
T PRK06292 4 YDVIVIGAGPAGYVAARRAAKLGKKVAL 31 (460)
T ss_pred ccEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 7899999999999999999999999876
No 136
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=98.04 E-value=5.6e-06 Score=61.19 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=26.0
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||||++|+.+|+.|+++|++|+|
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~L 28 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVIL 28 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 699999999999999999999999987
No 137
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.03 E-value=5.9e-06 Score=59.20 Aligned_cols=27 Identities=30% Similarity=0.540 Sum_probs=23.8
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||+|.||+.||+.++++|.+|+|
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G~~V~l 27 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAGAKVLL 27 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTTT-EEE
T ss_pred CEEEECCCHHHHHHHHHHhhhcCeEEE
Confidence 589999999999999999999999987
No 138
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.03 E-value=5.8e-06 Score=60.44 Aligned_cols=27 Identities=30% Similarity=0.438 Sum_probs=23.8
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||||.||+.||+.++++|++|.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~L 27 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLL 27 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEE
Confidence 589999999999999999999999986
No 139
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.03 E-value=5.6e-06 Score=60.39 Aligned_cols=27 Identities=33% Similarity=0.634 Sum_probs=22.9
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||||+||++||+.+++.|.+|+|
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlL 27 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLL 27 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEE
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEE
Confidence 589999999999999999999999987
No 140
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.02 E-value=6.2e-06 Score=63.21 Aligned_cols=29 Identities=28% Similarity=0.396 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||+||+.||+.+++.|.+|.+
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR~G~kV~L 32 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAARMGAKTLL 32 (618)
T ss_pred cceEEEECchHHHHHHHHHHHHcCCcEEE
Confidence 47999999999999999999999999986
No 141
>PLN02529 lysine-specific histone demethylase 1
Probab=98.02 E-value=8.4e-06 Score=63.57 Aligned_cols=31 Identities=39% Similarity=0.405 Sum_probs=28.7
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+|||+|++|+++|..|+++|++|+|
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v 188 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLSFGFKVVV 188 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHcCCcEEE
Confidence 4567999999999999999999999999987
No 142
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.02 E-value=5.6e-06 Score=62.37 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=28.6
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.-.++++|||||+||++||..|++.|++|++
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~G~~v~L 152 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADMGFKVYL 152 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHcCCeEEE
Confidence 3468999999999999999999999999987
No 143
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.02 E-value=9.8e-06 Score=61.72 Aligned_cols=32 Identities=34% Similarity=0.330 Sum_probs=27.7
Q ss_pred ccCCCcEEEECCCHHHHHHHHHHhHc----CCCeee
Q psy11001 49 LRTGKKVAIVGSGPSGLGAAHQLNKE----AGTELI 80 (81)
Q Consensus 49 ~~~~~~v~viG~G~aG~~~A~~L~~~----g~~v~v 80 (81)
....++++|||||.|||+||++|.+. |++|+|
T Consensus 19 ~~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtI 54 (576)
T PRK13977 19 GVDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITI 54 (576)
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEE
Confidence 34458999999999999999999996 678886
No 144
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.01 E-value=6.7e-06 Score=60.95 Aligned_cols=28 Identities=39% Similarity=0.551 Sum_probs=25.4
Q ss_pred CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v 80 (81)
.+|+|||||+|||+||++|.+++ .+++|
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~l 30 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTL 30 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEE
Confidence 37999999999999999999999 77765
No 145
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.00 E-value=6.9e-06 Score=61.06 Aligned_cols=29 Identities=17% Similarity=0.370 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+||+|+++|..|+++|++|.|
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~l 33 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAHGKKVAL 33 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 47999999999999999999999999987
No 146
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.00 E-value=7.8e-06 Score=60.58 Aligned_cols=31 Identities=39% Similarity=0.448 Sum_probs=28.8
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+..+|+|+|+|.|||++|++|.+.||+|+|
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~i 35 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQI 35 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhcCcEEEE
Confidence 4567999999999999999999999999987
No 147
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.00 E-value=1e-05 Score=46.23 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=25.6
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+++|||||+.|+..|..|++.|.+|++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtl 27 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTL 27 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEE
Confidence 689999999999999999999999886
No 148
>PLN02661 Putative thiazole synthesis
Probab=98.00 E-value=7e-06 Score=59.40 Aligned_cols=30 Identities=37% Similarity=0.532 Sum_probs=27.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKE-AGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~-g~~v~v 80 (81)
...+|+|||+|++|+.+|++|+++ |++|+|
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~v 121 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAI 121 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHHHcCCCeEEE
Confidence 457999999999999999999986 899887
No 149
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=97.99 E-value=1e-05 Score=59.24 Aligned_cols=30 Identities=37% Similarity=0.452 Sum_probs=27.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
...+|+|||||.+|+++|++|+++ |.+|+|
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~v 54 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLV 54 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEE
Confidence 346999999999999999999998 899987
No 150
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.99 E-value=9e-06 Score=59.89 Aligned_cols=29 Identities=24% Similarity=0.437 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+||+|+.+|..|++.|++|+|
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~G~~V~l 32 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADLGLETVC 32 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 47999999999999999999999999986
No 151
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=97.99 E-value=9e-06 Score=60.31 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||++|+++|++|+++|++|+|
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rG~~V~L 34 (502)
T PRK13369 6 TYDLFVIGGGINGAGIARDAAGRGLKVLL 34 (502)
T ss_pred ccCEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 47899999999999999999999999987
No 152
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.98 E-value=8.7e-06 Score=59.47 Aligned_cols=29 Identities=24% Similarity=0.351 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|+||+++|+.++++|.+|+|
T Consensus 4 ~~DVvVVG~G~aGl~AA~~aa~~G~~V~v 32 (466)
T PRK08274 4 MVDVLVIGGGNAALCAALAAREAGASVLL 32 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 36899999999999999999999999987
No 153
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=1.4e-05 Score=61.23 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=27.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|||+|.||++||+.+++.|.+|+|
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~Vil 63 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGELGYNVKV 63 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEE
Confidence 356899999999999999999999999987
No 154
>PRK13748 putative mercuric reductase; Provisional
Probab=97.98 E-value=9.4e-06 Score=60.52 Aligned_cols=29 Identities=24% Similarity=0.368 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+||+|+++|..|++.|++|.|
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~G~~v~l 126 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQGARVTL 126 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence 58999999999999999999999999976
No 155
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.98 E-value=8.6e-06 Score=62.29 Aligned_cols=29 Identities=45% Similarity=0.486 Sum_probs=26.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKE-AGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~-g~~v~v 80 (81)
..+|+||||||+||++|..|++. |++|.|
T Consensus 32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~I 61 (634)
T PRK08294 32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRI 61 (634)
T ss_pred CCCEEEECCCHHHHHHHHHHhcCCCCcEEE
Confidence 57999999999999999999995 999887
No 156
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.96 E-value=9.6e-06 Score=59.94 Aligned_cols=27 Identities=44% Similarity=0.527 Sum_probs=25.7
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||+|++|+++|++|+++|++|+|
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v 27 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDI 27 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999999999987
No 157
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=97.96 E-value=1e-05 Score=60.72 Aligned_cols=29 Identities=24% Similarity=0.404 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||..|+++|++|+++|++|+|
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~rG~~V~L 34 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCALRGLRCIL 34 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHHcCCeEEE
Confidence 47899999999999999999999999987
No 158
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.95 E-value=1.3e-05 Score=63.02 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=28.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+|||||++|+++|+.|+++|++|+|
T Consensus 236 ~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v 266 (808)
T PLN02328 236 VEPANVVVVGAGLAGLVAARQLLSMGFKVVV 266 (808)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence 3457999999999999999999999999987
No 159
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.95 E-value=1.1e-05 Score=60.03 Aligned_cols=29 Identities=21% Similarity=0.362 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||.+|+++|++|+++|++|+|
T Consensus 6 ~~DVvIIGGGi~G~~~A~~la~rGl~V~L 34 (508)
T PRK12266 6 TYDLLVIGGGINGAGIARDAAGRGLSVLL 34 (508)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence 47899999999999999999999999987
No 160
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.93 E-value=1.1e-05 Score=58.51 Aligned_cols=28 Identities=32% Similarity=0.353 Sum_probs=26.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++|||||+||+++|..|++.|.+|+|
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~v 29 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLV 29 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 4799999999999999999999999887
No 161
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.91 E-value=1.3e-05 Score=58.96 Aligned_cols=29 Identities=24% Similarity=0.287 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+||||+++|..+++.|.+|+|
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~l 32 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQLGLKVAC 32 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 47899999999999999999999999876
No 162
>PRK06996 hypothetical protein; Provisional
Probab=97.91 E-value=1.2e-05 Score=57.64 Aligned_cols=31 Identities=32% Similarity=0.513 Sum_probs=26.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCC----Ceee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAG----TELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~----~v~v 80 (81)
...++|+||||||+|+++|+.|++.|+ +|+|
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l 43 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIAL 43 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEE
Confidence 345799999999999999999999973 5765
No 163
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.91 E-value=1.3e-05 Score=59.01 Aligned_cols=28 Identities=46% Similarity=0.501 Sum_probs=26.6
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||+|.||+++|+.+++.|.+|+|
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~G~~V~l 29 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKKGFDVTI 29 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCeEEE
Confidence 5799999999999999999999999987
No 164
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.90 E-value=1.1e-05 Score=57.92 Aligned_cols=27 Identities=41% Similarity=0.694 Sum_probs=25.0
Q ss_pred cEEEECCCHHHHHHHHHH--hHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQL--NKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L--~~~g~~v~v 80 (81)
+|+|||+||||+++|+.| ++.|++|.|
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vll 29 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLL 29 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEE
Confidence 589999999999999999 888998876
No 165
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.90 E-value=1.1e-05 Score=60.72 Aligned_cols=28 Identities=46% Similarity=0.675 Sum_probs=23.0
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||||+|||++|..|.+.|+++++
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~ 29 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTC 29 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEE
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeE
Confidence 7899999999999999999999999876
No 166
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.87 E-value=1.7e-05 Score=57.55 Aligned_cols=27 Identities=37% Similarity=0.548 Sum_probs=25.6
Q ss_pred cEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEA-GTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g-~~v~v 80 (81)
+|+|||+|.||+++|+.++++| .+|+|
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~G~~~V~v 28 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKAGAANVVL 28 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCccEEE
Confidence 5899999999999999999999 99887
No 167
>PRK07121 hypothetical protein; Validated
Probab=97.87 E-value=2.7e-05 Score=57.50 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=27.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|||+|.||+++|+.++++|.+|+|
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G~~Vil 48 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAGARVLV 48 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence 357899999999999999999999999987
No 168
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.86 E-value=1.8e-05 Score=60.55 Aligned_cols=31 Identities=23% Similarity=0.260 Sum_probs=28.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
..++|+|||||..|.++|++|+++|++|+|.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~Lv 100 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATRGLRVGLV 100 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhCCCEEEEE
Confidence 3479999999999999999999999999873
No 169
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.86 E-value=1.9e-05 Score=56.73 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=23.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
.++|+|||+|+||+++|..|+++|++
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~ 28 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFT 28 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCC
Confidence 36899999999999999999999984
No 170
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.85 E-value=2.9e-05 Score=57.76 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=27.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|||+|.||+++|+.+++.|.+|+|
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~Viv 89 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVI 89 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence 457999999999999999999999999987
No 171
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.84 E-value=1.7e-05 Score=61.72 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=25.6
Q ss_pred cEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
+|+||||||||+++|+.|+++ |++|+|
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~v 30 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTV 30 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEE
Confidence 699999999999999999998 899987
No 172
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.84 E-value=1.9e-05 Score=55.98 Aligned_cols=28 Identities=36% Similarity=0.487 Sum_probs=26.4
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
.|+|||+|++|+++|+.|+..|++|+|.
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG~~vtV~ 30 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAGREVTVF 30 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcCcEEEEE
Confidence 6999999999999999999999999873
No 173
>PLN02507 glutathione reductase
Probab=97.83 E-value=2.4e-05 Score=58.18 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=28.4
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++++|||+||+|+.+|..+++.|.+|.|
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~l 53 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGI 53 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 3457999999999999999999999999986
No 174
>PLN02568 polyamine oxidase
Probab=97.82 E-value=2.4e-05 Score=58.99 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=26.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcC-----CCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEA-----GTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g-----~~v~v 80 (81)
.++|+|||+|+|||++|..|++.| ++|+|
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v 38 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTV 38 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEE
Confidence 368999999999999999999988 78776
No 175
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.82 E-value=2.7e-05 Score=58.71 Aligned_cols=29 Identities=31% Similarity=0.384 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|++|+++|+.++++|++|+|
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~l 37 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLGLDVVV 37 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCeEEE
Confidence 56899999999999999999999999987
No 176
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.82 E-value=2.4e-05 Score=57.31 Aligned_cols=27 Identities=26% Similarity=0.494 Sum_probs=25.8
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+++|||+||+|+++|..|++.|.+|+|
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~l 28 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTL 28 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 699999999999999999999999987
No 177
>PLN02676 polyamine oxidase
Probab=97.81 E-value=3e-05 Score=57.67 Aligned_cols=30 Identities=40% Similarity=0.520 Sum_probs=26.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v 80 (81)
..++|+|||+|++||++|..|+++|+ +|+|
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~v 55 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILI 55 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence 45789999999999999999999998 4765
No 178
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.81 E-value=2.6e-05 Score=59.18 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=26.5
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|+|||+|.||++||+.+++.|.+|+|
T Consensus 4 ~DVlVVG~G~AGl~AAi~Aa~~G~~V~l 31 (589)
T PRK08641 4 GKVIVVGGGLAGLMATIKAAEAGVHVDL 31 (589)
T ss_pred ccEEEECchHHHHHHHHHHHHcCCcEEE
Confidence 4899999999999999999999999987
No 179
>PTZ00058 glutathione reductase; Provisional
Probab=97.80 E-value=2.9e-05 Score=58.89 Aligned_cols=30 Identities=17% Similarity=0.389 Sum_probs=28.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|||+|++|+.+|..+++.|.+|.|
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~Val 76 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVAL 76 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEE
Confidence 457999999999999999999999999976
No 180
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.79 E-value=2.5e-05 Score=56.17 Aligned_cols=27 Identities=26% Similarity=0.229 Sum_probs=25.0
Q ss_pred cEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
+|+|||||+||+++|+.|++. |++|.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~l 29 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRV 29 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEE
Confidence 589999999999999999997 999876
No 181
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.79 E-value=3.2e-05 Score=57.01 Aligned_cols=30 Identities=43% Similarity=0.555 Sum_probs=27.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v 80 (81)
+..+|+|||||++|+++|+.|.+.|.. ++|
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i 37 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVI 37 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcCCCcEEE
Confidence 457999999999999999999999988 654
No 182
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.79 E-value=2.6e-05 Score=58.57 Aligned_cols=27 Identities=37% Similarity=0.479 Sum_probs=25.7
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||+|.||++||+.++++|.+|+|
T Consensus 1 DVlVVG~G~AGl~AA~~aae~G~~V~l 27 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKAGLNTAV 27 (566)
T ss_pred CEEEECccHHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999999999987
No 183
>PLN02546 glutathione reductase
Probab=97.78 E-value=3.7e-05 Score=58.21 Aligned_cols=30 Identities=13% Similarity=0.251 Sum_probs=27.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|||+||+|+.+|..++++|.+|.|
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~l 107 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNFGASAAV 107 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 357999999999999999999999999986
No 184
>PRK14727 putative mercuric reductase; Provisional
Probab=97.73 E-value=4.7e-05 Score=56.17 Aligned_cols=30 Identities=30% Similarity=0.388 Sum_probs=27.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|||+|++|+++|..|+++|.+|++
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ 44 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTI 44 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 457999999999999999999999999876
No 185
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.72 E-value=4.1e-05 Score=58.51 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.||+.+++.|.+|+|
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~l 36 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAV 36 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence 46899999999999999999999999987
No 186
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.71 E-value=4.5e-05 Score=56.88 Aligned_cols=28 Identities=25% Similarity=0.369 Sum_probs=26.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+| +|+++|+++++.|.+|+|
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~G~~V~v 34 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAREGLSVAL 34 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHCCCcEEE
Confidence 4689999999 999999999999999987
No 187
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.71 E-value=5e-05 Score=57.68 Aligned_cols=30 Identities=33% Similarity=0.428 Sum_probs=27.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|||+|.||+.||+.+++.|.+|+|
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~v 40 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAV 40 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHCCCcEEE
Confidence 346899999999999999999999999987
No 188
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.71 E-value=4.8e-05 Score=58.36 Aligned_cols=29 Identities=28% Similarity=0.334 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.||+.+++.|.+|+|
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae~G~~Vil 78 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSEHGFNTAC 78 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHhcCCcEEE
Confidence 46899999999999999999999999987
No 189
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.70 E-value=6.5e-05 Score=56.45 Aligned_cols=30 Identities=33% Similarity=0.488 Sum_probs=27.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|||+|.||+.||+.+++.|.+|+|
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aae~G~~Vil 44 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAARRAGRRVLV 44 (541)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCeEEE
Confidence 347899999999999999999999999987
No 190
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.70 E-value=5.1e-05 Score=56.33 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+||+|+.+|..++++|.+|.+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~l 30 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADYGAKVML 30 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 36899999999999999999999999976
No 191
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.70 E-value=4.7e-05 Score=57.14 Aligned_cols=29 Identities=34% Similarity=0.503 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||++||+.+++.|.+|+|
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~~G~~Viv 32 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELADAGKRVLL 32 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999999999999987
No 192
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.69 E-value=5.9e-05 Score=57.37 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=27.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|||+|.||+.||+.+++.|.+|+|
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~l 40 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEAGLKTAC 40 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEE
Confidence 346899999999999999999999999887
No 193
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.69 E-value=5.6e-05 Score=57.43 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.||+.+++.|.+|+|
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~l 35 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQSGQSCAL 35 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHcCCcEEE
Confidence 46899999999999999999999999987
No 194
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.67 E-value=4e-05 Score=52.57 Aligned_cols=28 Identities=32% Similarity=0.427 Sum_probs=23.6
Q ss_pred CcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEA-GTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g-~~v~v 80 (81)
++++|||||++|..+|..|++.| .+|+|
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~Vlv 29 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLV 29 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEE
Confidence 47999999999999999999998 67876
No 195
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.66 E-value=6.5e-05 Score=56.77 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.||+.+++.|.+|+|
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~G~~V~l 33 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASAGFKVAV 33 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999999999999987
No 196
>PRK12839 hypothetical protein; Provisional
Probab=97.66 E-value=8.2e-05 Score=56.40 Aligned_cols=31 Identities=32% Similarity=0.414 Sum_probs=28.4
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
....+|+|||+|.+|+++|+.++++|.+|+|
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~ 36 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLV 36 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence 4467999999999999999999999999886
No 197
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.65 E-value=6.6e-05 Score=55.25 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=27.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||+|++|+++|+.|+++|++|+|
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~~g~~v~v 30 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAEAGKRVAL 30 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEE
Confidence 36899999999999999999999999876
No 198
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.65 E-value=6.2e-05 Score=55.39 Aligned_cols=28 Identities=25% Similarity=0.477 Sum_probs=26.4
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++++|||+|++|+.+|..++++|.+|++
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~ 29 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQLGADVTV 29 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 5799999999999999999999999976
No 199
>PLN03000 amine oxidase
Probab=97.65 E-value=7.3e-05 Score=59.40 Aligned_cols=31 Identities=39% Similarity=0.438 Sum_probs=28.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+|||+|++|+.+|.+|++.|++|+|
T Consensus 182 ~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~V 212 (881)
T PLN03000 182 SSKSSVVIVGAGLSGLAAARQLMRFGFKVTV 212 (881)
T ss_pred CCCCCEEEECccHHHHHHHHHHHHCCCcEEE
Confidence 3468999999999999999999999999987
No 200
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.64 E-value=5.9e-05 Score=57.16 Aligned_cols=28 Identities=29% Similarity=0.245 Sum_probs=26.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||+||+|+.+|..|+++|++|.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~ 28 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAM 28 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEE
Confidence 4799999999999999999999999987
No 201
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.64 E-value=4.3e-05 Score=55.81 Aligned_cols=30 Identities=37% Similarity=0.577 Sum_probs=25.9
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
....+|+|||+|.|||++|+.|+++ ++|++
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r-hdVTL 35 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR-HDVTL 35 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc-cceEE
Confidence 3467999999999999999999887 77775
No 202
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.63 E-value=7.4e-05 Score=56.71 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+++|+.++++|.+|+|
T Consensus 11 ~~DVvVVG~G~AGl~AA~~aae~G~~Viv 39 (584)
T PRK12835 11 EVDVLVVGSGGGGMTAALTAAARGLDTLV 39 (584)
T ss_pred cCCEEEECccHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999999999999987
No 203
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.63 E-value=6.4e-05 Score=57.43 Aligned_cols=30 Identities=27% Similarity=0.262 Sum_probs=27.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|||+|.||+.||+.+++.|.+|+|
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~l 57 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVELGYKTAC 57 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHcCCcEEE
Confidence 356899999999999999999999999987
No 204
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=5.4e-05 Score=55.56 Aligned_cols=30 Identities=27% Similarity=0.405 Sum_probs=27.0
Q ss_pred ccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001 49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTE 78 (81)
Q Consensus 49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v 78 (81)
.+..++|+|||+||||.++|.|.+|+|.+.
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRT 237 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRT 237 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhhcchh
Confidence 345689999999999999999999999875
No 205
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.63 E-value=6.5e-05 Score=57.81 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.||+.++++|.+|+|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~G~~Viv 33 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQRGLDTIV 33 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHcCCCEEE
Confidence 45899999999999999999999999987
No 206
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=97.62 E-value=6.3e-05 Score=55.98 Aligned_cols=27 Identities=15% Similarity=0.159 Sum_probs=25.4
Q ss_pred cEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
+|+|||||.+|+++|++|++. |.+|+|
T Consensus 2 DVvIIGgGI~G~a~A~~L~~~~~g~~V~V 30 (483)
T TIGR01320 2 DVVLIGAGIMSATLGVLLRELEPNWSITL 30 (483)
T ss_pred cEEEECchHHHHHHHHHHHHhCCCCeEEE
Confidence 699999999999999999997 899887
No 207
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.62 E-value=8.4e-05 Score=56.07 Aligned_cols=29 Identities=34% Similarity=0.396 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.+|+++|+.++++|.+|+|
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~G~~v~l 34 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADSGLEPLI 34 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999999999999987
No 208
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.62 E-value=7.5e-05 Score=55.59 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=27.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHc-CCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKE-AGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~-g~~v~v 80 (81)
+.++++|||+||+|..+|..++++ |.+|.|
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~l 32 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAV 32 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEE
Confidence 357999999999999999999997 899976
No 209
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.60 E-value=7.3e-05 Score=56.45 Aligned_cols=29 Identities=34% Similarity=0.379 Sum_probs=26.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcC---CCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEA---GTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g---~~v~v 80 (81)
..+|+|||+|.||++||+.+++.| .+|+|
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~l 36 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAV 36 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEE
Confidence 358999999999999999999998 88876
No 210
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.59 E-value=7.3e-05 Score=56.98 Aligned_cols=29 Identities=31% Similarity=0.439 Sum_probs=26.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
..+|+|||+|.||+.||+.+++. |.+|+|
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~l 41 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLI 41 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEE
Confidence 36899999999999999999998 999887
No 211
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.58 E-value=6.9e-05 Score=57.12 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=24.8
Q ss_pred EEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 55 VAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 55 v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
|+|||+|.||+.||+.+++.|.+|+|
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~Vil 26 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKL 26 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEE
Confidence 68999999999999999999999987
No 212
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.56 E-value=9.5e-05 Score=53.53 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=23.9
Q ss_pred cEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAG--TELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~--~v~v 80 (81)
+|+|||||++|+++|..|++.+. +|+|
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtl 30 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITV 30 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEE
Confidence 79999999999999999999864 6665
No 213
>KOG1276|consensus
Probab=97.56 E-value=9.2e-05 Score=55.07 Aligned_cols=31 Identities=42% Similarity=0.464 Sum_probs=27.8
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+.+|+|+|||.+||++|++|++++-+++|
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i 39 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTI 39 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceE
Confidence 3467999999999999999999999998865
No 214
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.55 E-value=0.0001 Score=54.53 Aligned_cols=27 Identities=33% Similarity=0.585 Sum_probs=24.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|+|||+|.||+.||+.+++.|. |+|
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~G~-V~l 29 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQGR-VIV 29 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhCCC-EEE
Confidence 589999999999999999999997 765
No 215
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.55 E-value=0.00012 Score=55.16 Aligned_cols=29 Identities=28% Similarity=0.407 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|++|+++|+.++++|.+|+|
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~G~~v~l 35 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHRGLSTVV 35 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHCCCCEEE
Confidence 46899999999999999999999999987
No 216
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=97.53 E-value=0.00011 Score=54.95 Aligned_cols=30 Identities=13% Similarity=0.165 Sum_probs=26.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
...+|+|||||+.|+++|++|++. |.+|+|
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~V 35 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITM 35 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEE
Confidence 346899999999999999999985 778876
No 217
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.53 E-value=0.00014 Score=55.08 Aligned_cols=31 Identities=26% Similarity=0.323 Sum_probs=28.3
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
....+|+|||+|.+|+++|+.++++|++|+|
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~ 40 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIV 40 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence 3467999999999999999999999999986
No 218
>PRK08275 putative oxidoreductase; Provisional
Probab=97.53 E-value=0.0001 Score=55.42 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=26.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
..+|+|||+|.||+.||+.+++. |.+|+|
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~Vil 39 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLL 39 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEE
Confidence 46899999999999999999987 678876
No 219
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.52 E-value=0.00011 Score=55.59 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=25.1
Q ss_pred CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v 80 (81)
.+|+|||+|.||++||+.+++.| .+|+|
T Consensus 4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~v 33 (575)
T PRK05945 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAV 33 (575)
T ss_pred ccEEEECccHHHHHHHHHHHHhcCCCcEEE
Confidence 57999999999999999999875 78876
No 220
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.52 E-value=0.0001 Score=56.52 Aligned_cols=27 Identities=33% Similarity=0.461 Sum_probs=24.9
Q ss_pred cEEEECCCHHHHHHHHHHh----HcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLN----KEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~----~~g~~v~v 80 (81)
+|+|||||.||+.||+.++ +.|.+|+|
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~Vil 31 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVL 31 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEE
Confidence 5899999999999999998 77999887
No 221
>KOG0685|consensus
Probab=97.52 E-value=0.00011 Score=54.91 Aligned_cols=29 Identities=31% Similarity=0.513 Sum_probs=25.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTEL 79 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~ 79 (81)
...+|+|||||.||++||..|.+.|++.+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~ 48 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDV 48 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceE
Confidence 34699999999999999999998888744
No 222
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=97.52 E-value=0.00011 Score=47.02 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=25.7
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
||.|+|+|..|.+.|..|+++|++|++
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l 27 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTL 27 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEE
Confidence 689999999999999999999999986
No 223
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.52 E-value=0.00013 Score=56.45 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|++|..+|..+++.|.+|.|
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~l 144 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVII 144 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 57999999999999999999999999986
No 224
>KOG1800|consensus
Probab=97.50 E-value=0.00013 Score=53.72 Aligned_cols=31 Identities=39% Similarity=0.542 Sum_probs=25.8
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
...++|.|||+||||+.+|..|.++ +..|+|
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi 50 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDI 50 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEe
Confidence 4456999999999999999999995 455654
No 225
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.47 E-value=0.00012 Score=54.11 Aligned_cols=27 Identities=33% Similarity=0.446 Sum_probs=23.0
Q ss_pred cEEEECCCHHHHHHHHHHhHcC---CCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEA---GTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g---~~v~v 80 (81)
+|+|||||+||..+|..|++.+ ++|+|
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~l 30 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTL 30 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEE
Confidence 6999999999999999999999 77776
No 226
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=97.45 E-value=0.00017 Score=52.65 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.2
Q ss_pred CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
.+|+|||||++|+.+|..|++. +++|+|
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~l 31 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIII 31 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEE
Confidence 4799999999999999999987 466665
No 227
>PLN02815 L-aspartate oxidase
Probab=97.44 E-value=0.00017 Score=54.99 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=25.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.||+.+++.| +|+|
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~Vvl 56 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAI 56 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEE
Confidence 468999999999999999999999 8776
No 228
>KOG2820|consensus
Probab=97.44 E-value=0.00014 Score=52.93 Aligned_cols=31 Identities=35% Similarity=0.506 Sum_probs=27.6
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.....++|||+|..|++||++|+++|+++++
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~g~kill 35 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKRGDKILL 35 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhcCCeEEE
Confidence 4567899999999999999999999988765
No 229
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.43 E-value=0.0002 Score=52.67 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++|+|||+|.+|+++|..|+++|++|++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~~G~~V~~ 44 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLELGARVTV 44 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 457899999999999999999999999876
No 230
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.43 E-value=0.00017 Score=54.07 Aligned_cols=28 Identities=32% Similarity=0.397 Sum_probs=25.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.||+.+ +.|.+|+|
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~G~~Vil 34 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ERGKNVVI 34 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hcCCCEEE
Confidence 36899999999999999999 99999987
No 231
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.42 E-value=0.00017 Score=57.11 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.+|+.+++.|.+|+|
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~l 41 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLL 41 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999999999999987
No 232
>PRK02106 choline dehydrogenase; Validated
Probab=97.42 E-value=0.0002 Score=53.82 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhH-cCCCeeeC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNK-EAGTELIK 81 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~-~g~~v~v~ 81 (81)
.++++|||||++|+..|..|++ .|++|+|.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~~g~~Vlvl 35 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLL 35 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhCCCCeEEEe
Confidence 4789999999999999999999 89999873
No 233
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.40 E-value=0.00021 Score=55.02 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=26.1
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||+|+||+.+|..++++|.+|.+
T Consensus 1 yDViVIGaG~AGl~aA~ala~~G~~v~L 28 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARMGAKTLL 28 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCEEE
Confidence 4799999999999999999999999876
No 234
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=97.39 E-value=0.00023 Score=53.35 Aligned_cols=30 Identities=27% Similarity=0.247 Sum_probs=26.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEA--GTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g--~~v~v 80 (81)
..++|+|||||..|+++|++|++.+ .+|+|
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~V 75 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIAL 75 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEE
Confidence 4579999999999999999999964 57765
No 235
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.39 E-value=0.0002 Score=53.50 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=25.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.||+.+++ |.+|+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~l 30 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH-EYNVII 30 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc-CCCEEE
Confidence 3589999999999999999976 889886
No 236
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.38 E-value=0.00024 Score=54.08 Aligned_cols=30 Identities=23% Similarity=0.317 Sum_probs=27.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|||+|.|||.||..++.+|.+|.+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l 34 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEAGLKVAL 34 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhcCCcEEE
Confidence 457999999999999999999999999876
No 237
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00015 Score=52.78 Aligned_cols=28 Identities=25% Similarity=0.483 Sum_probs=26.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..|.|||+|.||..+||+++++|.+|.+
T Consensus 4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L 31 (439)
T COG1206 4 QPINVIGAGLAGSEAAWQIAKRGVPVIL 31 (439)
T ss_pred CceEEEcccccccHHHHHHHHcCCcEEE
Confidence 5699999999999999999999999986
No 238
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.38 E-value=0.00019 Score=53.08 Aligned_cols=29 Identities=17% Similarity=0.107 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||+|.+|+.+|..|++.|.+|.+
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~GkkVLh 32 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNGKKVLH 32 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCCCEEEE
Confidence 47899999999999999999999999986
No 239
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.38 E-value=0.00024 Score=52.49 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=26.0
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++++|||+|++|+++|+.|+++|++|.|
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~g~~v~l 28 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEAGKKCAI 28 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHCCCCEEE
Confidence 4799999999999999999999999876
No 240
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.37 E-value=0.00022 Score=51.92 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=26.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||.||+++|+.|+++|.++.|
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~~Gk~c~i 30 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAI 30 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHhcCCcEEE
Confidence 36899999999999999999999999765
No 241
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.37 E-value=0.00021 Score=51.99 Aligned_cols=31 Identities=16% Similarity=0.203 Sum_probs=27.2
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+.++|+|||||.||+.+|..|.+.+++|+|
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~~~~Itl 38 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPKKYNITV 38 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcCCCeEEE
Confidence 3457999999999999999999887888876
No 242
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.37 E-value=0.00021 Score=52.16 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=25.5
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||.|++|+++|.+|+++|++|++
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~ 28 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVV 28 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEE
Confidence 589999999999999999999999875
No 243
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.36 E-value=0.00021 Score=52.31 Aligned_cols=28 Identities=39% Similarity=0.406 Sum_probs=25.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||++||+.++ .|.+|+|
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a~-~G~~V~l 31 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNLR-KDLKILM 31 (433)
T ss_pred cccEEEECchHHHHHHHHHhc-cCCCEEE
Confidence 368999999999999999975 7999887
No 244
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.36 E-value=0.00022 Score=53.89 Aligned_cols=28 Identities=36% Similarity=0.278 Sum_probs=25.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||++||+.++ .|.+|+|
T Consensus 9 e~DVlVVG~G~AGl~AAi~A~-~G~~V~l 36 (553)
T PRK07395 9 QFDVLVVGSGAAGLYAALCLP-SHLRVGL 36 (553)
T ss_pred cCCEEEECccHHHHHHHHHhh-cCCCEEE
Confidence 468999999999999999986 5999887
No 245
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.36 E-value=0.00028 Score=52.54 Aligned_cols=30 Identities=23% Similarity=0.345 Sum_probs=26.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|||+||+|..+|..+++.|.+|.+
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G~kval 32 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVAL 32 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCCCCEEE
Confidence 358999999999999999999999998544
No 246
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.34 E-value=0.00043 Score=52.42 Aligned_cols=29 Identities=24% Similarity=0.329 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.+|+++|+.++++|++|+|
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~~g~~v~l 44 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAIAGLKVLL 44 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEE
Confidence 46899999999999999999999999986
No 247
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.34 E-value=0.00024 Score=53.96 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=25.1
Q ss_pred CcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
.+|+|||+|.||+.||+.++++ |.+|+|
T Consensus 4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~l 33 (580)
T TIGR01176 4 HDIAVIGAGGAGLRAAIAAAEANPHLDVAL 33 (580)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEE
Confidence 5799999999999999999987 578876
No 248
>KOG2415|consensus
Probab=97.33 E-value=0.00012 Score=54.84 Aligned_cols=27 Identities=41% Similarity=0.583 Sum_probs=22.8
Q ss_pred CccCCCcEEEECCCHHHHHHHHHHhHc
Q psy11001 48 TLRTGKKVAIVGSGPSGLGAAHQLNKE 74 (81)
Q Consensus 48 ~~~~~~~v~viG~G~aG~~~A~~L~~~ 74 (81)
......+|+|||+|||||+||+.|.|.
T Consensus 72 R~~e~~Dv~IVG~GPAGLsaAIrlKQl 98 (621)
T KOG2415|consen 72 RESEEVDVVIVGAGPAGLSAAIRLKQL 98 (621)
T ss_pred hhhccccEEEECCCchhHHHHHHHHHH
Confidence 344567999999999999999998764
No 249
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.33 E-value=0.00025 Score=53.79 Aligned_cols=28 Identities=29% Similarity=0.373 Sum_probs=25.1
Q ss_pred CcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEA--GTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g--~~v~v 80 (81)
.+|+|||+|.||+.||+.+++.| .+|+|
T Consensus 5 ~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~l 34 (582)
T PRK09231 5 ADLAIIGAGGAGLRAAIAAAEANPNLKIAL 34 (582)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEE
Confidence 58999999999999999999874 68876
No 250
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.33 E-value=0.00031 Score=52.77 Aligned_cols=31 Identities=19% Similarity=0.139 Sum_probs=27.3
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
+...+|+|||||.+|+++|++|++. +.+|+|
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~v 36 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEV 36 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEE
Confidence 3456899999999999999999999 788776
No 251
>PLN02976 amine oxidase
Probab=97.32 E-value=0.0003 Score=58.72 Aligned_cols=30 Identities=37% Similarity=0.657 Sum_probs=27.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++|+|||+|++|+++|+.|++.|++|+|
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~V 721 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTV 721 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHHCCCcEEE
Confidence 457899999999999999999999999887
No 252
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=97.31 E-value=0.00035 Score=45.18 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=26.7
Q ss_pred ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+++|+|||+|.+++.+|..|++.|.+|++
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~ 195 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTL 195 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEE
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEE
Confidence 34579999999999999999999999988775
No 253
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00016 Score=53.28 Aligned_cols=55 Identities=18% Similarity=0.305 Sum_probs=43.0
Q ss_pred cchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 23 VTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 23 i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..|..++.|-.+..++..|.. +....+|+|+|||+|.+|...|.+|++.|-+|++
T Consensus 149 P~~~G~~~f~g~~~HS~~~~~---~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~ 203 (443)
T COG2072 149 PDFAGLDEFKGRILHSADWPN---PEDLRGKRVLVIGAGASAVDIAPELAEVGASVTL 203 (443)
T ss_pred CCCCCccCCCceEEchhcCCC---ccccCCCeEEEECCCccHHHHHHHHHhcCCeeEE
Confidence 345556666666666666655 3456789999999999999999999999988875
No 254
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=97.29 E-value=0.00032 Score=49.20 Aligned_cols=30 Identities=37% Similarity=0.513 Sum_probs=27.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
.++++|+|+|+.|+.+|..|+++|++|++.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~ 165 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLI 165 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHcCCeEEEE
Confidence 479999999999999999999999998873
No 255
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.28 E-value=0.00031 Score=50.77 Aligned_cols=29 Identities=31% Similarity=0.231 Sum_probs=26.9
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
++.+|||||.+|+..|..|+++|++|.|.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIv 30 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIV 30 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHcCCEEEEE
Confidence 57899999999999999999999999873
No 256
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.27 E-value=0.0002 Score=54.05 Aligned_cols=53 Identities=25% Similarity=0.329 Sum_probs=40.4
Q ss_pred hhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 25 IKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 25 i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++.++.|-.+..++..|.. +....+|+|+|||+|.+|...|.+|++...+|++
T Consensus 159 ~~G~e~F~G~i~HS~~yr~---~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~ 211 (531)
T PF00743_consen 159 FPGLEKFKGEIIHSKDYRD---PEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYL 211 (531)
T ss_dssp -CTGGGHCSEEEEGGG--T---GGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEE
T ss_pred hhhhhcCCeeEEccccCcC---hhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEE
Confidence 5667777665556666544 4556789999999999999999999999888875
No 257
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.27 E-value=0.00034 Score=53.06 Aligned_cols=28 Identities=29% Similarity=0.429 Sum_probs=25.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.||+.+++. .+|+|
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~~-~~Vil 32 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGPR-ARTAV 32 (583)
T ss_pred eccEEEECccHHHHHHHHHHHhC-CCEEE
Confidence 35899999999999999999976 88876
No 258
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.27 E-value=0.00041 Score=56.46 Aligned_cols=30 Identities=23% Similarity=0.346 Sum_probs=27.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|||+|.||++||+.+++.|.+|+|
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~Ga~Viv 437 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASCGAQVIL 437 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHCCCcEEE
Confidence 347899999999999999999999999987
No 259
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.22 E-value=0.00061 Score=51.69 Aligned_cols=30 Identities=33% Similarity=0.430 Sum_probs=27.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
....+|+|||+| +|+++|+.+++.|.+|+|
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v 43 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELGLSVLI 43 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCCCcEEE
Confidence 446899999999 899999999999999986
No 260
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.21 E-value=0.00047 Score=51.79 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=25.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.||+.+++. .+|+|
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~~-~~Vil 35 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAEH-RRVAV 35 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHHC-CCEEE
Confidence 46899999999999999999886 78876
No 261
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=97.20 E-value=0.00051 Score=49.99 Aligned_cols=30 Identities=43% Similarity=0.632 Sum_probs=27.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+.++++|+|+|.+|+.+|..|+++|++|++
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~ 33 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKKLGAKVIL 33 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 358899999999999999999999999986
No 262
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=97.11 E-value=0.00069 Score=44.44 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=24.7
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|.|||+|..|...|..+++.|++|++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l 27 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTL 27 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEE
Confidence 589999999999999999999999987
No 263
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.11 E-value=0.00059 Score=48.66 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=22.4
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
++++|||+|+||+.+|..|++++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~ 27 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAH 27 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcC
Confidence 5899999999999999999987654
No 264
>PRK09897 hypothetical protein; Provisional
Probab=97.10 E-value=0.00059 Score=51.69 Aligned_cols=28 Identities=39% Similarity=0.597 Sum_probs=23.7
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCC--Ceee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAG--TELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~--~v~v 80 (81)
++|+|||+||+|+++|..|.+.+. +|+|
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~l 31 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISI 31 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEE
Confidence 589999999999999999998754 4554
No 265
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=97.07 E-value=0.00053 Score=45.28 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.4
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|.|||.|..|+.+|..|+++||+|+-
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g 28 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIG 28 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEE
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEE
Confidence 799999999999999999999999873
No 266
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.06 E-value=0.00073 Score=49.72 Aligned_cols=29 Identities=38% Similarity=0.503 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.+|.+|+..|.+|.|
T Consensus 5 ~~dvivvgaglaglvaa~elA~aG~~V~i 33 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADAGKRVLI 33 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhcCceEEE
Confidence 46899999999999999999999999987
No 267
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.01 E-value=0.00052 Score=51.75 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=24.4
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||+|.|||++|+.|++. ++|+|
T Consensus 9 dV~IiGsG~AGL~~AL~L~~~-~~V~v 34 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAPS-FRVTV 34 (518)
T ss_pred cEEEECCcHHHHHHHHhCCCC-CcEEE
Confidence 799999999999999999998 88876
No 268
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=97.01 E-value=0.00062 Score=50.83 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=24.8
Q ss_pred cEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEA-GTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g-~~v~v 80 (81)
+++|||||.+|+..|..|++.| ++|+|
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~Vlv 28 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLV 28 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEE
Confidence 4899999999999999999998 68876
No 269
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=97.01 E-value=0.0011 Score=47.36 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=27.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|++|+.+|..|++.|.+|++
T Consensus 141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtl 169 (377)
T PRK04965 141 AQRVLVVGGGLIGTELAMDLCRAGKAVTL 169 (377)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 47899999999999999999999999876
No 270
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.98 E-value=0.0011 Score=47.58 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtl 172 (396)
T PRK09754 144 ERSVVIVGAGTIGLELAASATQRRCKVTV 172 (396)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 47899999999999999999999999886
No 271
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.98 E-value=0.001 Score=50.51 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=28.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+++|||||..|+-+|..++.+|++|.+
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~RGl~v~L 40 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGRGLKVAL 40 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhCCCeEEE
Confidence 568999999999999999999999999987
No 272
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=96.95 E-value=0.0014 Score=40.97 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=24.6
Q ss_pred EEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 55 VAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 55 v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
|+|+|+|..|...|++|++.|++|++
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l 26 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTL 26 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEE
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEE
Confidence 68999999999999999999999876
No 273
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.95 E-value=0.00082 Score=47.45 Aligned_cols=27 Identities=7% Similarity=0.148 Sum_probs=22.8
Q ss_pred cEEEECCCHHHHHHHHHHhHc---CCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKE---AGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~---g~~v~v 80 (81)
+|+|||||+||+.+|..|+++ +++|+|
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~l 30 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTL 30 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEE
Confidence 589999999999999999754 567765
No 274
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=96.95 E-value=0.00081 Score=50.79 Aligned_cols=30 Identities=30% Similarity=0.352 Sum_probs=28.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|||+|.+|...|..|+..|++|+|
T Consensus 6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~Vll 35 (542)
T COG2303 6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLV 35 (542)
T ss_pred CCCCEEEECCCchhHHHHHHhcCCCCeEEE
Confidence 458999999999999999999999999987
No 275
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=96.94 E-value=0.00047 Score=51.13 Aligned_cols=33 Identities=21% Similarity=0.219 Sum_probs=29.4
Q ss_pred CccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 48 TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 48 ~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
....+++|+|||+|.+|+..|.+|++.+.+|++
T Consensus 200 ~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l 232 (461)
T PLN02172 200 DPFKNEVVVVIGNFASGADISRDIAKVAKEVHI 232 (461)
T ss_pred cccCCCEEEEECCCcCHHHHHHHHHHhCCeEEE
Confidence 345678999999999999999999999998876
No 276
>PRK07512 L-aspartate oxidase; Provisional
Probab=96.92 E-value=0.00095 Score=49.93 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=23.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|.||+.||+.++ |.+|+|
T Consensus 9 ~~DVlVIG~G~AGl~AAl~Aa--~~~V~l 35 (513)
T PRK07512 9 TGRPVIVGGGLAGLMAALKLA--PRPVVV 35 (513)
T ss_pred cCCEEEECchHHHHHHHHHhC--cCCEEE
Confidence 468999999999999999987 557776
No 277
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=96.92 E-value=0.0014 Score=48.26 Aligned_cols=29 Identities=31% Similarity=0.297 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|++|+.+|..|++.|.+|++
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~~g~~Vtl 208 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLADFGVEVTV 208 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 47999999999999999999999999886
No 278
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.88 E-value=0.0013 Score=48.71 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=26.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEA--GTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g--~~v~v 80 (81)
.++|+|||||..|+++|++|++.. ++|.|
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~l 33 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVAL 33 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEE
Confidence 478999999999999999999999 88876
No 279
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.87 E-value=0.0016 Score=47.31 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|++|+.+|..|++.|.+|++
T Consensus 157 ~~~vvIIGgG~~g~e~A~~l~~~g~~Vtl 185 (438)
T PRK07251 157 PERLGIIGGGNIGLEFAGLYNKLGSKVTV 185 (438)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 46899999999999999999999999886
No 280
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=96.85 E-value=0.0018 Score=46.77 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=27.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||+|++|+.+|.+|++.|.+|++
T Consensus 137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtl 165 (427)
T TIGR03385 137 VENVVIIGGGYIGIEMAEALRERGKNVTL 165 (427)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 47999999999999999999999999876
No 281
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=96.82 E-value=0.0021 Score=43.06 Aligned_cols=31 Identities=29% Similarity=0.378 Sum_probs=28.4
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
-.+++|+|||+|.+|...+..|.+.|.+|+|
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtV 37 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGAQLRV 37 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence 3468999999999999999999999999887
No 282
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=96.80 E-value=0.0022 Score=46.78 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|++|+.+|..|++.|.+|++
T Consensus 170 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtl 198 (461)
T TIGR01350 170 PESLVIIGGGVIGIEFASIFASLGSKVTV 198 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 47999999999999999999999999876
No 283
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.80 E-value=0.0011 Score=50.74 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=27.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|||||-||..||+..+|.|.++.+
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlL 32 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAARMGAKTLL 32 (621)
T ss_pred CCceEEECCCccchHHHHhhhccCCeEEE
Confidence 38999999999999999999999999875
No 284
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.75 E-value=0.0022 Score=46.83 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|++|+.+|..|++.|.+|++
T Consensus 172 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtl 200 (462)
T PRK06416 172 PKSLVVIGGGYIGVEFASAYASLGAEVTI 200 (462)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 47899999999999999999999999876
No 285
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=96.75 E-value=0.0011 Score=39.68 Aligned_cols=30 Identities=30% Similarity=0.490 Sum_probs=27.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++++|+|||+|..|..-+..|.+.|.+|+|
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~v 35 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTV 35 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 568999999999999999999999999887
No 286
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=96.74 E-value=0.0028 Score=40.83 Aligned_cols=32 Identities=22% Similarity=0.235 Sum_probs=29.1
Q ss_pred ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.-.+++|+|||||..|..-+..|.+.|++|+|
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~V 41 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTV 41 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 34678999999999999999999999999987
No 287
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=96.73 E-value=0.0023 Score=46.84 Aligned_cols=29 Identities=21% Similarity=0.406 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|++|+.+|..|++.|.+|++
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~~g~~Vtl 194 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFARLGSEVTI 194 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 47899999999999999999999999886
No 288
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=96.71 E-value=0.0038 Score=38.98 Aligned_cols=31 Identities=26% Similarity=0.372 Sum_probs=27.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v 80 (81)
-++++++|+|+|-+|..++..|...|.+ ++|
T Consensus 10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i 41 (135)
T PF01488_consen 10 LKGKRVLVIGAGGAARAVAAALAALGAKEITI 41 (135)
T ss_dssp GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEE
Confidence 3568999999999999999999999988 554
No 289
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.71 E-value=0.0028 Score=46.71 Aligned_cols=30 Identities=17% Similarity=0.322 Sum_probs=27.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|||+|+.|+..|..|++.|.+|++
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtl 202 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTV 202 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 357999999999999999999999999976
No 290
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=96.70 E-value=0.0027 Score=46.30 Aligned_cols=30 Identities=23% Similarity=0.367 Sum_probs=27.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|||+|+.|+..|..|++.|.+|++
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtl 197 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSRLGVKVTV 197 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 347999999999999999999999999886
No 291
>PRK12831 putative oxidoreductase; Provisional
Probab=96.68 E-value=0.0027 Score=47.02 Aligned_cols=31 Identities=35% Similarity=0.488 Sum_probs=28.3
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+|||+|..|+.+|..|.+.|.+|++
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtl 309 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEVHI 309 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEEEE
Confidence 3568999999999999999999999999876
No 292
>PRK06370 mercuric reductase; Validated
Probab=96.67 E-value=0.0027 Score=46.50 Aligned_cols=29 Identities=21% Similarity=0.344 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 171 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtl 199 (463)
T PRK06370 171 PEHLVIIGGGYIGLEFAQMFRRFGSEVTV 199 (463)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 47999999999999999999999999886
No 293
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=96.67 E-value=0.0028 Score=46.60 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=27.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++|+|||+|..|+.+|..|++.|.+|++
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~~G~~Vtl 300 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALRLGAEVHC 300 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 467999999999999999999999999876
No 294
>KOG0404|consensus
Probab=96.66 E-value=0.002 Score=45.04 Aligned_cols=29 Identities=31% Similarity=0.446 Sum_probs=26.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.-+|+|||+|||+-.+|++++++.++.++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaaraelkPll 36 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARAELKPLL 36 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhcccCceE
Confidence 35899999999999999999999988765
No 295
>KOG1298|consensus
Probab=96.66 E-value=0.0024 Score=47.47 Aligned_cols=31 Identities=29% Similarity=0.356 Sum_probs=28.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
...+|+|||+|.+|.+.|+.|+|.|.+|+|.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVI 74 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVI 74 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEE
Confidence 3468999999999999999999999999873
No 296
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=96.65 E-value=0.0029 Score=46.43 Aligned_cols=29 Identities=24% Similarity=0.232 Sum_probs=26.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|++|+.+|..|++.|.+|++
T Consensus 170 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtl 198 (458)
T PRK06912 170 PSSLLIVGGGVIGCEFASIYSRLGTKVTI 198 (458)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 46899999999999999999999999876
No 297
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=96.65 E-value=0.003 Score=46.40 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtl 194 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHGLGSETHL 194 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 47999999999999999999999999986
No 298
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=96.65 E-value=0.0029 Score=46.14 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 175 ~~~v~IiGgG~~g~E~A~~l~~~g~~Vtl 203 (461)
T PRK05249 175 PRSLIIYGAGVIGCEYASIFAALGVKVTL 203 (461)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 57999999999999999999999999886
No 299
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.65 E-value=0.0029 Score=46.22 Aligned_cols=29 Identities=21% Similarity=0.229 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtl 176 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTL 176 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 46899999999999999999999999886
No 300
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.64 E-value=0.003 Score=46.62 Aligned_cols=29 Identities=17% Similarity=0.297 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 174 ~~~vvIiGgG~iG~E~A~~l~~~G~~Vtl 202 (471)
T PRK06467 174 PKRLLVMGGGIIGLEMGTVYHRLGSEVDV 202 (471)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 47899999999999999999999999987
No 301
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=96.62 E-value=0.0031 Score=46.29 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+.+|..|++.|.+|++
T Consensus 172 ~~~vvVIGgG~ig~E~A~~l~~~G~~Vtl 200 (466)
T PRK07818 172 PKSIVIAGAGAIGMEFAYVLKNYGVDVTI 200 (466)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 47999999999999999999999999876
No 302
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.60 E-value=0.0032 Score=43.68 Aligned_cols=28 Identities=29% Similarity=0.250 Sum_probs=26.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|.|||+|..|...|..|+++|++|++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l 31 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTI 31 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 5799999999999999999999999876
No 303
>PRK07846 mycothione reductase; Reviewed
Probab=96.59 E-value=0.0033 Score=46.24 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl 194 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFSALGVRVTV 194 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 47999999999999999999999999886
No 304
>PRK13748 putative mercuric reductase; Provisional
Probab=96.59 E-value=0.0035 Score=46.90 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtl 298 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFARLGSKVTI 298 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 47899999999999999999999999886
No 305
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.57 E-value=0.0036 Score=43.37 Aligned_cols=28 Identities=25% Similarity=0.355 Sum_probs=26.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|.|||+|..|...|..|+++|++|++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~ 29 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTL 29 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEE
Confidence 4799999999999999999999999986
No 306
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=96.57 E-value=0.0044 Score=41.44 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=28.4
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
-.+++++|||+|-.|...|..|.+.|.+|+|
T Consensus 8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~V 38 (202)
T PRK06718 8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVV 38 (202)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 4578999999999999999999999999887
No 307
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.57 E-value=0.0032 Score=45.78 Aligned_cols=29 Identities=34% Similarity=0.442 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|+|+|.+|+++|..|+++|++|++
T Consensus 5 ~k~v~v~G~g~~G~s~a~~l~~~G~~V~~ 33 (447)
T PRK02472 5 NKKVLVLGLAKSGYAAAKLLHKLGANVTV 33 (447)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCEEEE
Confidence 57899999999999999999999999875
No 308
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.57 E-value=0.0033 Score=44.04 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=26.1
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|.|||+|..|...|..|+++|++|++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v 30 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRL 30 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEE
Confidence 3699999999999999999999999986
No 309
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.56 E-value=0.0045 Score=44.27 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
-++|.|||+|..|...|..+++.|++|++
T Consensus 7 i~~VaVIGaG~MG~giA~~~a~aG~~V~l 35 (321)
T PRK07066 7 IKTFAAIGSGVIGSGWVARALAHGLDVVA 35 (321)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence 46899999999999999999999999986
No 310
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.55 E-value=0.0029 Score=44.18 Aligned_cols=29 Identities=28% Similarity=0.459 Sum_probs=26.9
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
.+|.|||+|..|...|..|++.|++|++.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~ 34 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVF 34 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEE
Confidence 48999999999999999999999999873
No 311
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=96.54 E-value=0.0038 Score=43.09 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=25.4
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|+|+|..|...|..|++.|++|++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~ 28 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTF 28 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEE
Confidence 699999999999999999999999875
No 312
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.53 E-value=0.0043 Score=44.97 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=27.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|++|+..|.+|++.|.+|++
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtl 177 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRI 177 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCcEEE
Confidence 47999999999999999999999999876
No 313
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.52 E-value=0.0035 Score=49.21 Aligned_cols=29 Identities=34% Similarity=0.340 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+.+|..|++.|.+|+|
T Consensus 140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtv 168 (785)
T TIGR02374 140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSV 168 (785)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 47899999999999999999999999886
No 314
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.52 E-value=0.0036 Score=46.07 Aligned_cols=29 Identities=34% Similarity=0.321 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|+|.|.+|+++|..|+++|++|++
T Consensus 14 ~~~i~v~G~G~sG~a~a~~L~~~G~~V~~ 42 (458)
T PRK01710 14 NKKVAVVGIGVSNIPLIKFLVKLGAKVTA 42 (458)
T ss_pred CCeEEEEcccHHHHHHHHHHHHCCCEEEE
Confidence 57899999999999999999999999875
No 315
>PRK14694 putative mercuric reductase; Provisional
Probab=96.51 E-value=0.0039 Score=45.85 Aligned_cols=29 Identities=10% Similarity=0.260 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~~g~~Vtl 206 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFARLGSRVTV 206 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 47999999999999999999999999886
No 316
>PRK10262 thioredoxin reductase; Provisional
Probab=96.50 E-value=0.0043 Score=43.21 Aligned_cols=30 Identities=27% Similarity=0.402 Sum_probs=27.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|||+|..|+..|.+|++.|.+|++
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtl 174 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSNIASEVHL 174 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhCCEEEE
Confidence 467999999999999999999999998876
No 317
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.50 E-value=0.0042 Score=45.64 Aligned_cols=29 Identities=24% Similarity=0.237 Sum_probs=27.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl 197 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSALGTRVTI 197 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 47999999999999999999999999887
No 318
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=96.49 E-value=0.0045 Score=45.65 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+.+|..|++.|.+|++
T Consensus 183 ~~~vvVvGgG~~g~E~A~~l~~~g~~Vtl 211 (475)
T PRK06327 183 PKKLAVIGAGVIGLELGSVWRRLGAEVTI 211 (475)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 47999999999999999999999999886
No 319
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=96.49 E-value=0.0044 Score=41.96 Aligned_cols=30 Identities=33% Similarity=0.436 Sum_probs=27.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++|+|||+|++|+..|.+|++.+.+|++
T Consensus 140 ~~~~v~ViG~G~~~~e~a~~l~~~~~~V~~ 169 (300)
T TIGR01292 140 KNKEVAVVGGGDSAIEEALYLTRIAKKVTL 169 (300)
T ss_pred CCCEEEEECCChHHHHHHHHHHhhcCEEEE
Confidence 457999999999999999999999988875
No 320
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=96.49 E-value=0.0039 Score=46.59 Aligned_cols=30 Identities=37% Similarity=0.534 Sum_probs=27.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++|+|||+|+.|+.+|..|++.|.+|++
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~~~g~~Vtl 380 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLAGIVRHVTV 380 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHHhcCcEEEE
Confidence 357999999999999999999999998876
No 321
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=96.48 E-value=0.0047 Score=45.93 Aligned_cols=29 Identities=21% Similarity=0.098 Sum_probs=27.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 180 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl 208 (484)
T TIGR01438 180 PGKTLVVGASYVALECAGFLAGIGLDVTV 208 (484)
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCcEEE
Confidence 36899999999999999999999999987
No 322
>PRK07846 mycothione reductase; Reviewed
Probab=96.48 E-value=0.0035 Score=46.09 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.6
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++++|||+||+|..+|.. +.|.+|.+
T Consensus 2 yD~vVIG~G~~g~~aa~~--~~G~~V~l 27 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--FADKRIAI 27 (451)
T ss_pred CCEEEECCCHHHHHHHHH--HCCCeEEE
Confidence 689999999999998875 46999876
No 323
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=96.47 E-value=0.0037 Score=45.92 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=22.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+||+|..+|. +..|.+|.+
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~g~~V~l 28 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFADKRIAI 28 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHCCCeEEE
Confidence 379999999999999875 457999876
No 324
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=96.46 E-value=0.0053 Score=43.08 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=26.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|+|||+|..|...|..|++.|++|++
T Consensus 5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~ 33 (313)
T PRK06249 5 TPRIGIIGTGAIGGFYGAMLARAGFDVHF 33 (313)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 35899999999999999999999999876
No 325
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.45 E-value=0.0047 Score=42.85 Aligned_cols=28 Identities=36% Similarity=0.513 Sum_probs=26.4
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|.|||+|..|...|..|+++|++|++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l 32 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLL 32 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEE
Confidence 5799999999999999999999999886
No 326
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.44 E-value=0.0046 Score=46.05 Aligned_cols=30 Identities=20% Similarity=0.371 Sum_probs=27.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++|+|+|.|.+|++++.+|.++|++|++
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~ 40 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTRFGARPTV 40 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHCCCEEEE
Confidence 457899999999999999999999999875
No 327
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=96.44 E-value=0.0055 Score=43.44 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=26.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGT-ELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~-v~v 80 (81)
.++++|||+|+.|+..|.+|++.|.+ |+|
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtv 201 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYL 201 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 57999999999999999999999987 766
No 328
>PTZ00052 thioredoxin reductase; Provisional
Probab=96.44 E-value=0.0048 Score=46.01 Aligned_cols=29 Identities=31% Similarity=0.233 Sum_probs=27.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 182 ~~~vvIIGgG~iG~E~A~~l~~~G~~Vtl 210 (499)
T PTZ00052 182 PGKTLIVGASYIGLETAGFLNELGFDVTV 210 (499)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCcEEE
Confidence 35899999999999999999999999987
No 329
>PRK14727 putative mercuric reductase; Provisional
Probab=96.41 E-value=0.0049 Score=45.60 Aligned_cols=29 Identities=14% Similarity=0.178 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~~G~~Vtl 216 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYARLGSRVTI 216 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 47899999999999999999999999886
No 330
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=96.41 E-value=0.0054 Score=39.57 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=25.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|+|+|.+|..|+..|...|.+|++
T Consensus 19 ~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~ 48 (168)
T PF01262_consen 19 PPAKVVVTGAGRVGQGAAEIAKGLGAEVVV 48 (168)
T ss_dssp -T-EEEEESTSHHHHHHHHHHHHTT-EEEE
T ss_pred CCeEEEEECCCHHHHHHHHHHhHCCCEEEe
Confidence 347999999999999999999999999875
No 331
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.40 E-value=0.005 Score=42.35 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=25.4
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|||+|..|...|..|++.|++|++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~ 28 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTL 28 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 599999999999999999999999876
No 332
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.40 E-value=0.0045 Score=46.74 Aligned_cols=30 Identities=27% Similarity=0.335 Sum_probs=27.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++|+|||+|+.|+..|.+|++.|.+|++
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtl 171 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTV 171 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHccCCEEEE
Confidence 467999999999999999999999999886
No 333
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.39 E-value=0.0048 Score=46.07 Aligned_cols=30 Identities=37% Similarity=0.546 Sum_probs=27.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++|+|||+|.+|+.+|.+|+..+.+|++
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~~~~~~Vtl 379 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLAGIVKHVTV 379 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence 467999999999999999999999998876
No 334
>PRK06116 glutathione reductase; Validated
Probab=96.39 E-value=0.0052 Score=44.84 Aligned_cols=29 Identities=31% Similarity=0.349 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 167 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtl 195 (450)
T PRK06116 167 PKRVAVVGAGYIAVEFAGVLNGLGSETHL 195 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 47999999999999999999999999876
No 335
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.38 E-value=0.0054 Score=44.80 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=26.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|+|.|.+|+++|.+|+++|++|++
T Consensus 5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~ 33 (445)
T PRK04308 5 NKKILVAGLGGTGISMIAYLRKNGAEVAA 33 (445)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 57899999999999999999999999875
No 336
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=96.37 E-value=0.0053 Score=42.60 Aligned_cols=28 Identities=32% Similarity=0.457 Sum_probs=26.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|.|||+|..|...|..|+++|++|++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l 31 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTI 31 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEE
Confidence 5799999999999999999999999876
No 337
>PLN02785 Protein HOTHEAD
Probab=96.37 E-value=0.0048 Score=47.19 Aligned_cols=28 Identities=25% Similarity=0.352 Sum_probs=25.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|.||+..|..|++ +++|+|
T Consensus 55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLl 82 (587)
T PLN02785 55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLL 82 (587)
T ss_pred cCCEEEECcCHHHHHHHHHHhc-CCcEEE
Confidence 5899999999999999999999 688876
No 338
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.36 E-value=0.0049 Score=45.69 Aligned_cols=29 Identities=28% Similarity=0.439 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+++|+|+|.|.+|.++|.+|.++|.+|++
T Consensus 8 ~~~v~v~G~G~sG~~~~~~l~~~g~~v~~ 36 (468)
T PRK04690 8 GRRVALWGWGREGRAAYRALRAHLPAQAL 36 (468)
T ss_pred CCEEEEEccchhhHHHHHHHHHcCCEEEE
Confidence 57899999999999999999999999876
No 339
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.35 E-value=0.0049 Score=49.00 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=24.1
Q ss_pred CcEEEECCCHHHHHHHHHHhHc----CCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKE----AGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~----g~~v~v 80 (81)
++|+|||+|+||+.+|..|+++ +++|+|
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itv 35 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITV 35 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEE
Confidence 5899999999999999999865 467776
No 340
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=96.35 E-value=0.0058 Score=44.72 Aligned_cols=29 Identities=17% Similarity=0.105 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 166 ~~~vvVIGgG~~g~E~A~~l~~~G~~Vtl 194 (446)
T TIGR01424 166 PKSILILGGGYIAVEFAGIWRGLGVQVTL 194 (446)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 47899999999999999999999999886
No 341
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=96.34 E-value=0.0061 Score=41.34 Aligned_cols=28 Identities=29% Similarity=0.539 Sum_probs=26.1
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++|||+|..|...|..|.+.|+.|++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~ 28 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVL 28 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEE
Confidence 3689999999999999999999999876
No 342
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.34 E-value=0.005 Score=45.45 Aligned_cols=29 Identities=31% Similarity=0.503 Sum_probs=25.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcC--CCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEA--GTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g--~~v~v 80 (81)
.++|+|+|||.+|+.+|..|.++- .++++
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itL 33 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITL 33 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEE
Confidence 578999999999999999999985 65554
No 343
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=96.30 E-value=0.0062 Score=44.89 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=27.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|..|+..|.+|++.|.+|++
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~~g~~Vtl 205 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTELGVKVTL 205 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 46899999999999999999999999886
No 344
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.29 E-value=0.007 Score=44.88 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=27.8
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+|+|.|-+|+++|.+|.++|++|++
T Consensus 13 ~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~ 43 (473)
T PRK00141 13 ELSGRVLVAGAGVSGRGIAAMLSELGCDVVV 43 (473)
T ss_pred ccCCeEEEEccCHHHHHHHHHHHHCCCEEEE
Confidence 3457899999999999999999999998875
No 345
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.28 E-value=0.0043 Score=46.58 Aligned_cols=23 Identities=48% Similarity=0.537 Sum_probs=21.1
Q ss_pred CcEEEECCCHHHHHHHHHHhHcC
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEA 75 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g 75 (81)
++|+|||+|++|+.+|.+|.+.-
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~ 24 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSP 24 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCC
Confidence 68999999999999999999863
No 346
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=96.27 E-value=0.006 Score=48.52 Aligned_cols=29 Identities=34% Similarity=0.405 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+.+|..|++.|.+|+|
T Consensus 145 ~k~vvVIGgG~iGlE~A~~L~~~G~~Vtv 173 (847)
T PRK14989 145 SKRGAVVGGGLLGLEAAGALKNLGVETHV 173 (847)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 46899999999999999999999999886
No 347
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.24 E-value=0.0068 Score=41.85 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=26.2
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|.|||+|..|...|..|+++|++|++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~ 31 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVM 31 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEE
Confidence 4799999999999999999999999876
No 348
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.21 E-value=0.0075 Score=42.36 Aligned_cols=28 Identities=21% Similarity=0.170 Sum_probs=26.1
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|+|+|+|..|...|.+|++.|++|++
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~l 30 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRL 30 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEE
Confidence 4799999999999999999999999876
No 349
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=96.20 E-value=0.0057 Score=45.17 Aligned_cols=27 Identities=22% Similarity=0.357 Sum_probs=25.4
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|.|+|+|..|++.|.-|++.||+|+.
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~ 28 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVC 28 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEE
Confidence 689999999999999999999999874
No 350
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=96.19 E-value=0.008 Score=44.85 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=28.9
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
.-+++++|||||+.|+..|..+++.|.+|+|.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTii 202 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAALGSKVTVV 202 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEE
Confidence 34578999999999999999999999999973
No 351
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=96.17 E-value=0.0081 Score=44.09 Aligned_cols=30 Identities=27% Similarity=0.534 Sum_probs=27.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v 80 (81)
..++|+|||+|..|+.+|..|++.|. +|++
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtl 302 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTI 302 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 46899999999999999999999998 6765
No 352
>KOG2852|consensus
Probab=96.15 E-value=0.0021 Score=46.24 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.9
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcC
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEA 75 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g 75 (81)
...++|+|+|||..|..+|+||++++
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~ 33 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHP 33 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCC
Confidence 34589999999999999999999998
No 353
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=96.15 E-value=0.0082 Score=42.22 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=26.0
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|.|||+|..|...|..|+++|++|++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~ 30 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTL 30 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEE
Confidence 3699999999999999999999999875
No 354
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=96.11 E-value=0.0097 Score=43.33 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 158 ~~~v~ViGgG~~g~E~A~~l~~~g~~Vtl 186 (441)
T PRK08010 158 PGHLGILGGGYIGVEFASMFANFGSKVTI 186 (441)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999999999999886
No 355
>KOG1399|consensus
Probab=96.10 E-value=0.005 Score=45.92 Aligned_cols=50 Identities=24% Similarity=0.252 Sum_probs=37.1
Q ss_pred HHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 28 IECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 28 l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++.|-.+..+++.+.. +.....++|+|||+|.+|+..|.++++...+|.+
T Consensus 165 ~~~f~G~~iHS~~Yk~---~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~ 214 (448)
T KOG1399|consen 165 IESFKGKIIHSHDYKS---PEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHL 214 (448)
T ss_pred hhhcCCcceehhhccC---cccccCceEEEECCCccHHHHHHHHHHhccCcce
Confidence 4455555555555543 4456779999999999999999999988877654
No 356
>PLN02507 glutathione reductase
Probab=96.09 E-value=0.0091 Score=44.59 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=27.2
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~~G~~Vtl 231 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRGMGATVDL 231 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCeEEE
Confidence 47899999999999999999999999987
No 357
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=96.07 E-value=0.0077 Score=44.28 Aligned_cols=31 Identities=26% Similarity=0.191 Sum_probs=27.4
Q ss_pred cCCCcEEEECCCHHHHH-HHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLG-AAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~-~A~~L~~~g~~v~v 80 (81)
.+.++|+|+|.|-+|++ +|.+|.++|++|++
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~ 36 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSG 36 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEE
Confidence 34568999999999999 59999999999875
No 358
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.06 E-value=0.0067 Score=47.67 Aligned_cols=26 Identities=23% Similarity=0.258 Sum_probs=22.1
Q ss_pred EEEECCCHHHHHHHHHHhHcC---CCeee
Q psy11001 55 VAIVGSGPSGLGAAHQLNKEA---GTELI 80 (81)
Q Consensus 55 v~viG~G~aG~~~A~~L~~~g---~~v~v 80 (81)
|+|||+|+||+.+|..|++++ ++|+|
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itv 29 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITI 29 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEE
Confidence 689999999999999988754 56766
No 359
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=96.04 E-value=0.012 Score=39.17 Aligned_cols=30 Identities=33% Similarity=0.501 Sum_probs=27.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++++++|+|.|-.|..+|..|.+.|++|++
T Consensus 27 ~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 27 EGKTVAVQGLGKVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 467899999999999999999999999875
No 360
>KOG1335|consensus
Probab=96.02 E-value=0.0074 Score=44.95 Aligned_cols=30 Identities=23% Similarity=0.320 Sum_probs=27.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|||+||.|-.||...++.|++...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTac 67 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTAC 67 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEE
Confidence 468999999999999999999999998653
No 361
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=96.02 E-value=0.011 Score=46.09 Aligned_cols=30 Identities=33% Similarity=0.512 Sum_probs=27.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v 80 (81)
.+++|+|||+|..|+.+|..|.+.|.+ |++
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtl 599 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKRLGAERVTI 599 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 468999999999999999999999987 776
No 362
>PTZ00058 glutathione reductase; Provisional
Probab=95.96 E-value=0.011 Score=44.98 Aligned_cols=29 Identities=24% Similarity=0.397 Sum_probs=27.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~~G~~Vtl 265 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNRLGAESYI 265 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcCCcEEE
Confidence 57999999999999999999999999986
No 363
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.96 E-value=0.014 Score=40.77 Aligned_cols=28 Identities=25% Similarity=0.493 Sum_probs=26.2
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|.|||+|..|...|..|++.|++|++
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~ 32 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVL 32 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 5799999999999999999999999875
No 364
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.94 E-value=0.011 Score=41.50 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=25.3
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|.|||+|..|...|..|+++|++|++
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l 28 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNL 28 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence 589999999999999999999999875
No 365
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=95.93 E-value=0.027 Score=44.09 Aligned_cols=30 Identities=30% Similarity=0.366 Sum_probs=27.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
-++|.|||+|..|...|..+++.|++|+++
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~ 342 (715)
T PRK11730 313 VKQAAVLGAGIMGGGIAYQSASKGVPVIMK 342 (715)
T ss_pred cceEEEECCchhHHHHHHHHHhCCCeEEEE
Confidence 468999999999999999999999999874
No 366
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.92 E-value=0.01 Score=43.56 Aligned_cols=29 Identities=38% Similarity=0.538 Sum_probs=26.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|.|+|.|-+|+++|.+|.++|++|++
T Consensus 9 ~~~i~viG~G~~G~~~a~~l~~~G~~v~~ 37 (460)
T PRK01390 9 GKTVAVFGLGGSGLATARALVAGGAEVIA 37 (460)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999875
No 367
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.91 E-value=0.011 Score=44.00 Aligned_cols=29 Identities=28% Similarity=0.408 Sum_probs=26.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|+|.|-+|+++|..|.++|++|++
T Consensus 7 ~~~i~v~G~G~sG~s~a~~L~~~G~~v~~ 35 (498)
T PRK02006 7 GPMVLVLGLGESGLAMARWCARHGARLRV 35 (498)
T ss_pred CCEEEEEeecHhHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999875
No 368
>PRK04148 hypothetical protein; Provisional
Probab=95.91 E-value=0.0073 Score=38.40 Aligned_cols=28 Identities=21% Similarity=0.296 Sum_probs=25.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++||.| +|...|..|++.|++|+.
T Consensus 17 ~~kileIG~G-fG~~vA~~L~~~G~~Via 44 (134)
T PRK04148 17 NKKIVELGIG-FYFKVAKKLKESGFDVIV 44 (134)
T ss_pred CCEEEEEEec-CCHHHHHHHHHCCCEEEE
Confidence 4689999999 999999999999999874
No 369
>KOG2960|consensus
Probab=95.89 E-value=0.0012 Score=45.93 Aligned_cols=54 Identities=24% Similarity=0.323 Sum_probs=33.3
Q ss_pred cchhhHHHHHHHhhHhhCCCCCCCCCccCCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001 23 VTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTE 78 (81)
Q Consensus 23 i~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~aG~~~A~~L~~~g~~v 78 (81)
+.+..+.+....+.+.++|..+. .....-+|+|+|+|.+||++|++.+++.-.+
T Consensus 49 F~FaPIrEStVSRaMTrRYf~Dl--dkyAesDvviVGAGSaGLsAAY~I~~~rPdl 102 (328)
T KOG2960|consen 49 FKFAPIRESTVSRAMTRRYFKDL--DKYAESDVVIVGAGSAGLSAAYVIAKNRPDL 102 (328)
T ss_pred ccccchhHHHHHHHHHHHHHHHH--HhhhccceEEECCCccccceeeeeeccCCCc
Confidence 44444544444444443332111 1123458999999999999999999776544
No 370
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=95.84 E-value=0.013 Score=45.56 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|||+|+.|+..|..|++.|.+|++
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~~G~eVTL 340 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTALGSEVVS 340 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHhCCCeEEE
Confidence 46899999999999999999999999887
No 371
>PLN02546 glutathione reductase
Probab=95.81 E-value=0.015 Score=44.32 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=27.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|||+|+.|+..|..|++.|.+|++
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtl 280 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHV 280 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 357999999999999999999999999886
No 372
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=95.78 E-value=0.014 Score=40.54 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=26.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|.|||+|..|...|..|++.|++|++
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~ 32 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWL 32 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEE
Confidence 5799999999999999999999999876
No 373
>KOG2311|consensus
Probab=95.77 E-value=0.01 Score=45.33 Aligned_cols=31 Identities=23% Similarity=0.387 Sum_probs=27.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+|||||-||..||...+|.|-+.++
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlL 56 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLL 56 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhcCCceEE
Confidence 3468999999999999999999999988665
No 374
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=95.76 E-value=0.013 Score=43.00 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=26.2
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|.|||.|..|+..|..|+++|++|+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~ 31 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIG 31 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEE
Confidence 5799999999999999999999999875
No 375
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=95.75 E-value=0.022 Score=39.02 Aligned_cols=32 Identities=25% Similarity=0.298 Sum_probs=28.9
Q ss_pred ccCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 49 ~~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|+|||||..+..-+..|.+.|-+|+|
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtV 53 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYI 53 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 44578999999999999999999999999887
No 376
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=95.75 E-value=0.012 Score=42.74 Aligned_cols=27 Identities=30% Similarity=0.278 Sum_probs=25.4
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|.|||.|..|+..|..|+++|++|++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~ 28 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTG 28 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEE
Confidence 599999999999999999999999875
No 377
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=95.75 E-value=0.015 Score=45.57 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=28.7
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
..-++|.|||+|..|...|..+++.|++|+++
T Consensus 311 ~~i~~v~ViGaG~mG~gIA~~~a~~G~~V~l~ 342 (714)
T TIGR02437 311 KDVKQAAVLGAGIMGGGIAYQSASKGTPIVMK 342 (714)
T ss_pred cccceEEEECCchHHHHHHHHHHhCCCeEEEE
Confidence 34578999999999999999999999999874
No 378
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.71 E-value=0.016 Score=40.82 Aligned_cols=28 Identities=21% Similarity=0.269 Sum_probs=26.1
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
-+|.|||+|..|...|..|+++|++|++
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~ 32 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRL 32 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEE
Confidence 4799999999999999999999999876
No 379
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.67 E-value=0.013 Score=43.38 Aligned_cols=29 Identities=21% Similarity=0.458 Sum_probs=25.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++|+|+|.|.+|.++|.+|.+ |.+|++
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v 33 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIV 33 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEE
Confidence 35789999999999999999994 998876
No 380
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.66 E-value=0.019 Score=41.62 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=26.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+++|+|+|.+|+.+|..|.+.|.+|++
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v 195 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTI 195 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEE
Confidence 346799999999999999999999998765
No 381
>KOG3923|consensus
Probab=95.65 E-value=0.0083 Score=43.13 Aligned_cols=26 Identities=23% Similarity=0.376 Sum_probs=22.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
..+|+|||+|..|+++|+.+.+.++.
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~ 28 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHS 28 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhh
Confidence 46899999999999999999987644
No 382
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=95.64 E-value=0.016 Score=43.73 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=26.9
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
++|.|||+|..|...|..|++.|++|++.
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~ 34 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLY 34 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEE
Confidence 57999999999999999999999999873
No 383
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=95.62 E-value=0.016 Score=43.62 Aligned_cols=30 Identities=30% Similarity=0.424 Sum_probs=27.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
-++|.|||+|..|...|..|++.|++|+++
T Consensus 7 i~~V~VIGaG~MG~gIA~~la~aG~~V~l~ 36 (507)
T PRK08268 7 IATVAVIGAGAMGAGIAQVAAQAGHTVLLY 36 (507)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 367999999999999999999999999873
No 384
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=95.58 E-value=0.019 Score=40.71 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.8
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|.|+|+|..|...|+.|+++|.+|++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~ 28 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTL 28 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEE
Confidence 799999999999999999999977764
No 385
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=95.57 E-value=0.019 Score=46.30 Aligned_cols=30 Identities=30% Similarity=0.549 Sum_probs=27.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++|+|||+|..|+.+|..+.+.|.+|++
T Consensus 446 ~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtl 475 (944)
T PRK12779 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTI 475 (944)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEE
Confidence 568999999999999999999999998875
No 386
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=95.57 E-value=0.022 Score=38.04 Aligned_cols=30 Identities=27% Similarity=0.288 Sum_probs=26.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v 80 (81)
...+|+|+|+|-.|...|..|++.|+. +++
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~Gvg~i~l 50 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARAGIGKLIL 50 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEE
Confidence 457899999999999999999999995 554
No 387
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.56 E-value=0.024 Score=39.76 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=26.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+|.|||+|..|...|..|+++|++|.+
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~ 32 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGHRVRV 32 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEE
Confidence 35799999999999999999999999876
No 388
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=95.56 E-value=0.02 Score=40.48 Aligned_cols=28 Identities=25% Similarity=0.459 Sum_probs=24.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v 80 (81)
.+|.|||+|..|...|+.|+.+|+ +|++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~Vvl 30 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVL 30 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEE
Confidence 479999999999999999999987 6654
No 389
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=95.55 E-value=0.023 Score=41.96 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=25.6
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCC-Cee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAG-TEL 79 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~-~v~ 79 (81)
...++|+|||+|..|+.+|..+.+.|. +|+
T Consensus 279 ~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt 309 (471)
T PRK12810 279 AKGKHVVVIGGGDTGMDCVGTAIRQGAKSVT 309 (471)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEE
Confidence 346899999999999999999899886 454
No 390
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.51 E-value=0.026 Score=36.88 Aligned_cols=31 Identities=32% Similarity=0.354 Sum_probs=26.9
Q ss_pred cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v 80 (81)
-.+++++|||+|- +|..+|..|.++|.+|++
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v 73 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNRNATVTV 73 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEE
Confidence 3568999999996 699999999999988765
No 391
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=95.49 E-value=0.015 Score=43.45 Aligned_cols=29 Identities=45% Similarity=0.563 Sum_probs=27.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|+|-|-+|+++|.+|.++|.+|++
T Consensus 7 ~~kv~V~GLG~sG~a~a~~L~~~G~~v~v 35 (448)
T COG0771 7 GKKVLVLGLGKSGLAAARFLLKLGAEVTV 35 (448)
T ss_pred CCEEEEEecccccHHHHHHHHHCCCeEEE
Confidence 68999999999999999999999999886
No 392
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.48 E-value=0.021 Score=41.59 Aligned_cols=29 Identities=34% Similarity=0.488 Sum_probs=26.8
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|+|-|-+|++++..|+++|++|++
T Consensus 6 ~~~i~v~G~G~sG~s~~~~l~~~G~~v~~ 34 (438)
T PRK03806 6 GKKVVIIGLGLTGLSCVDFFLARGVTPRV 34 (438)
T ss_pred CCEEEEEeeCHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999999999999875
No 393
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.46 E-value=0.026 Score=39.75 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=27.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++++|+|.|.+|..++..|.++|.+|++
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v 180 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTV 180 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999999999998775
No 394
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=95.46 E-value=0.023 Score=39.49 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=25.5
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|.|||+|..|...|..|++.|++|++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~ 29 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTL 29 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 699999999999999999999999875
No 395
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.45 E-value=0.029 Score=36.63 Aligned_cols=30 Identities=33% Similarity=0.601 Sum_probs=26.6
Q ss_pred CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|+|+ |..|...|..|++.|++|++
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l 57 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVVL 57 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEE
Confidence 3578999997 99999999999999988775
No 396
>KOG4716|consensus
Probab=95.39 E-value=0.022 Score=42.08 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=28.2
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+..++.+|||+|.+||++|-+.++.|.+|.+
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~G~kV~~ 47 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVAC 47 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhcCCcEEE
Confidence 4568999999999999999999999999865
No 397
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.36 E-value=0.027 Score=39.53 Aligned_cols=30 Identities=20% Similarity=0.445 Sum_probs=27.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++++|+|.|..|...|..|...|.+|++
T Consensus 150 ~gk~v~IiG~G~iG~avA~~L~~~G~~V~v 179 (287)
T TIGR02853 150 HGSNVMVLGFGRTGMTIARTFSALGARVFV 179 (287)
T ss_pred CCCEEEEEcChHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999999999998875
No 398
>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase.
Probab=95.36 E-value=0.019 Score=41.73 Aligned_cols=27 Identities=30% Similarity=0.479 Sum_probs=25.1
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++.|||-|-+|+++|..|.++|++|++
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~ 27 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTV 27 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEE
Confidence 489999999999999999999999875
No 399
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=95.35 E-value=0.027 Score=44.30 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=28.6
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
..-++|.|||+|..|...|..+++.|++|+++
T Consensus 333 ~~i~~v~ViGaG~MG~gIA~~~a~~G~~V~l~ 364 (737)
T TIGR02441 333 RPVKTLAVLGAGLMGAGIAQVSVDKGLKTVLK 364 (737)
T ss_pred CcccEEEEECCCHhHHHHHHHHHhCCCcEEEe
Confidence 34568999999999999999999999999874
No 400
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=95.33 E-value=0.028 Score=43.35 Aligned_cols=30 Identities=30% Similarity=0.481 Sum_probs=26.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v 80 (81)
.+++|+|||+|..|+.+|..|++.|.+ |++
T Consensus 322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtl 352 (652)
T PRK12814 322 PGKKVVVIGGGNTAIDAARTALRLGAESVTI 352 (652)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCeEEE
Confidence 468999999999999999999999974 665
No 401
>KOG4254|consensus
Probab=95.31 E-value=0.017 Score=43.67 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=28.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+..++++|||+|.-||.+|.+|+|-|.+|.|
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~g~~V~v 42 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARYGQSVAV 42 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhcCcceEE
Confidence 4568999999999999999999999999876
No 402
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.27 E-value=0.026 Score=42.23 Aligned_cols=28 Identities=25% Similarity=0.210 Sum_probs=26.2
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|.|||+|..|...|..|+++|++|++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v 32 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAV 32 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEE
Confidence 4799999999999999999999999986
No 403
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.27 E-value=0.023 Score=41.57 Aligned_cols=29 Identities=21% Similarity=0.278 Sum_probs=26.4
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..-|+|+|-|-+|+++|..|.++|++|++
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~ 34 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAV 34 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEE
Confidence 35799999999999999999999999875
No 404
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=95.23 E-value=0.029 Score=42.52 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=26.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+.+|+|+|+|++|+.++..+...|.+|++
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a 193 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGAIVRA 193 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence 367999999999999999999999987654
No 405
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=95.22 E-value=0.03 Score=41.83 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhHc---CCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKE---AGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~---g~~v~v 80 (81)
.++++|||+|+.|+..|..++.. |.+|+|
T Consensus 187 ~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtl 218 (486)
T TIGR01423 187 PRRVLTVGGGFISVEFAGIFNAYKPRGGKVTL 218 (486)
T ss_pred CCeEEEECCCHHHHHHHHHHHHhccCCCeEEE
Confidence 47899999999999999877654 888886
No 406
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=95.19 E-value=0.035 Score=38.85 Aligned_cols=30 Identities=27% Similarity=0.309 Sum_probs=26.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v 80 (81)
..++++|+|+|-+|.++|+.|++.|.+ ++|
T Consensus 126 ~~k~vlIlGaGGaaraia~aL~~~G~~~I~I 156 (284)
T PRK12549 126 SLERVVQLGAGGAGAAVAHALLTLGVERLTI 156 (284)
T ss_pred cCCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence 347899999999999999999999984 554
No 407
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=95.19 E-value=0.029 Score=41.30 Aligned_cols=28 Identities=32% Similarity=0.557 Sum_probs=26.0
Q ss_pred CcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEA-GTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g-~~v~v 80 (81)
.+|+|||+|-.|..+|..|+++| ++|++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~i 30 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTI 30 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEE
Confidence 58999999999999999999999 88876
No 408
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.17 E-value=0.034 Score=41.15 Aligned_cols=30 Identities=27% Similarity=0.521 Sum_probs=27.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++|+|+|.|+.|+.+|..+...|.+|++
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV 230 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIV 230 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 468999999999999999999999998775
No 409
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=95.13 E-value=0.072 Score=38.60 Aligned_cols=30 Identities=30% Similarity=0.205 Sum_probs=27.3
Q ss_pred CCCcEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVG-SGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG-~G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|.||| .|..|-+.|..|.++|++|++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~ 127 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRI 127 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEE
Confidence 457899999 899999999999999999876
No 410
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=95.12 E-value=0.037 Score=38.15 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=26.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|+|+|-+|.+.|..|++.|+++++
T Consensus 116 ~~k~vliiGaGg~g~aia~~L~~~g~~v~v 145 (270)
T TIGR00507 116 PNQRVLIIGAGGAARAVALPLLKADCNVII 145 (270)
T ss_pred cCCEEEEEcCcHHHHHHHHHHHHCCCEEEE
Confidence 357899999999999999999999988765
No 411
>KOG2844|consensus
Probab=95.11 E-value=0.026 Score=44.49 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=25.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.-+++|||+|.+|..+|++|++.|.+..+
T Consensus 39 ~A~vvViggG~~g~~~~yhlak~g~k~av 67 (856)
T KOG2844|consen 39 TADVVVIGGGSLGCSTAYHLAKRGMKGAV 67 (856)
T ss_pred cccEEEEcCCchhHHHHHHHHHccccceE
Confidence 35899999999999999999999998543
No 412
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=95.08 E-value=0.029 Score=40.25 Aligned_cols=27 Identities=33% Similarity=0.448 Sum_probs=21.2
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAG 76 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~ 76 (81)
...++|+|||||.++...+..|.+.+.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~ 214 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGP 214 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-T
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCC
Confidence 456899999999999999999999976
No 413
>PRK13984 putative oxidoreductase; Provisional
Probab=95.04 E-value=0.036 Score=42.11 Aligned_cols=26 Identities=12% Similarity=0.351 Sum_probs=23.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAG 76 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~ 76 (81)
..++|+|||||..|+.+|..|++.|.
T Consensus 417 ~~k~VvVIGGG~~g~e~A~~l~r~~~ 442 (604)
T PRK13984 417 IPRSLVVIGGGNVAMDIARSMARLQK 442 (604)
T ss_pred CCCcEEEECCchHHHHHHHHHHhccc
Confidence 35799999999999999999998864
No 414
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=95.00 E-value=0.036 Score=40.04 Aligned_cols=28 Identities=25% Similarity=0.430 Sum_probs=26.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|.|+|+|.-|-+.|..|+++|+.|.+
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~l 29 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRL 29 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEE
Confidence 4799999999999999999999999976
No 415
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.99 E-value=0.033 Score=43.48 Aligned_cols=31 Identities=32% Similarity=0.293 Sum_probs=27.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHh-HcCCCeeeC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLN-KEAGTELIK 81 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~-~~g~~v~v~ 81 (81)
.-++|.|||+|..|...|..++ +.|++|++.
T Consensus 308 ~i~~v~ViGaG~mG~giA~~~a~~~G~~V~l~ 339 (708)
T PRK11154 308 PVNKVGVLGGGLMGGGIAYVTATKAGLPVRIK 339 (708)
T ss_pred cccEEEEECCchhhHHHHHHHHHHcCCeEEEE
Confidence 3478999999999999999999 889999873
No 416
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=94.98 E-value=0.027 Score=40.24 Aligned_cols=30 Identities=33% Similarity=0.427 Sum_probs=27.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeeeC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v~ 81 (81)
-++|.|||+|..|...|..++..||+|+++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~ 32 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLK 32 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEE
Confidence 368999999999999999999988999874
No 417
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=94.96 E-value=0.038 Score=39.86 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=24.9
Q ss_pred cEEEECCCHHHHHHHHHHhHcC--------CCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEA--------GTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g--------~~v~v 80 (81)
+|.|||+|.-|.+.|..|+++| ++|.+
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~l 35 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRM 35 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEE
Confidence 5899999999999999999999 88875
No 418
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=94.93 E-value=0.041 Score=41.69 Aligned_cols=30 Identities=23% Similarity=0.426 Sum_probs=26.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..++++|+|+|-+|.++|+.|++.|.++++
T Consensus 378 ~~k~vlIlGaGGagrAia~~L~~~G~~V~i 407 (529)
T PLN02520 378 AGKLFVVIGAGGAGKALAYGAKEKGARVVI 407 (529)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence 357899999999999999999999997765
No 419
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=94.87 E-value=0.046 Score=33.78 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.5
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
..+|+|+|+|..|...|..|++.|..
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~ 27 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVG 27 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCC
Confidence 46899999999999999999999986
No 420
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=94.87 E-value=0.046 Score=38.82 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=28.3
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+++|+|||+|-+++..|.+|++.+-+|++
T Consensus 141 ~~~k~v~ViGgG~sAve~Al~L~~~a~~Vtl 171 (305)
T COG0492 141 FKGKDVVVIGGGDSAVEEALYLSKIAKKVTL 171 (305)
T ss_pred ccCCeEEEEcCCHHHHHHHHHHHHhcCeEEE
Confidence 4567999999999999999999999988876
No 421
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.84 E-value=0.035 Score=40.39 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=25.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
++|+|||-|.+|+++|..|.++|++|+.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g 31 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIG 31 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEE
Confidence 5799999999999999999999998764
No 422
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=94.83 E-value=0.047 Score=34.89 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=24.1
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|.+||-|..|...|..|+++||+|.+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~ 29 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTV 29 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEE
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEe
Confidence 4799999999999999999999999875
No 423
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=94.80 E-value=0.036 Score=43.26 Aligned_cols=31 Identities=39% Similarity=0.336 Sum_probs=27.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHh-HcCCCeeeC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLN-KEAGTELIK 81 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~-~~g~~v~v~ 81 (81)
.-++|.|||+|..|...|..++ +.|++|++.
T Consensus 303 ~i~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~ 334 (699)
T TIGR02440 303 KIKKVGILGGGLMGGGIASVTATKAGIPVRIK 334 (699)
T ss_pred cccEEEEECCcHHHHHHHHHHHHHcCCeEEEE
Confidence 3468999999999999999988 589999873
No 424
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=94.80 E-value=0.059 Score=37.71 Aligned_cols=30 Identities=23% Similarity=0.388 Sum_probs=26.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v 80 (81)
..++++|+|+|=+|.++|..|++.|.+ |+|
T Consensus 125 ~~k~vlI~GAGGagrAia~~La~~G~~~V~I 155 (289)
T PRK12548 125 KGKKLTVIGAGGAATAIQVQCALDGAKEITI 155 (289)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence 357899999999999999999999987 665
No 425
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=94.78 E-value=0.054 Score=38.78 Aligned_cols=31 Identities=19% Similarity=0.224 Sum_probs=28.1
Q ss_pred cCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+|.|+ |..|...+.+|.++||+|+.
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~ 50 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYIIA 50 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEEE
Confidence 45689999998 99999999999999999874
No 426
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=94.77 E-value=0.049 Score=36.38 Aligned_cols=27 Identities=37% Similarity=0.639 Sum_probs=24.6
Q ss_pred cEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVG-SGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG-~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|.||| +|..|.+.|..|+++|++|++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v 29 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIII 29 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEE
Confidence 589997 799999999999999998875
No 427
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.75 E-value=0.047 Score=39.79 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=19.5
Q ss_pred CcEEEECCCHHHHHHHHHHhH
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNK 73 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~ 73 (81)
++++|||+|++|+..|.+|+.
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~ 194 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELAD 194 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999999986
No 428
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=94.74 E-value=0.058 Score=36.61 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
+..+++|+|+|-+|..+|..|.+.|.+
T Consensus 24 ~~~rvlvlGAGgAg~aiA~~L~~~G~~ 50 (226)
T cd05311 24 EEVKIVINGAGAAGIAIARLLLAAGAK 50 (226)
T ss_pred cCCEEEEECchHHHHHHHHHHHHcCcC
Confidence 347899999999999999999999975
No 429
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=94.74 E-value=0.047 Score=38.49 Aligned_cols=23 Identities=43% Similarity=0.368 Sum_probs=21.8
Q ss_pred cEEEECCCHHHHHHHHHHhHcCC
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAG 76 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~ 76 (81)
+|.|||+|..|.+.|+.|+++|+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~ 24 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGL 24 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCC
Confidence 69999999999999999999994
No 430
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=94.70 E-value=0.051 Score=38.18 Aligned_cols=24 Identities=33% Similarity=0.445 Sum_probs=22.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCC
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAG 76 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~ 76 (81)
++|+|||+|.+|.+.|+.|+.+|.
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~ 24 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGI 24 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC
Confidence 379999999999999999999995
No 431
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=94.65 E-value=0.06 Score=37.33 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=26.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~v 80 (81)
..++++|+|+|-+|.+++..|+..| .+|+|
T Consensus 122 ~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v 152 (278)
T PRK00258 122 KGKRILILGAGGAARAVILPLLDLGVAEITI 152 (278)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHcCCCEEEE
Confidence 4578999999999999999999999 56665
No 432
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=94.64 E-value=0.059 Score=38.72 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=24.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
...+|+|||+|-.|...|..|++.|..
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg 49 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIG 49 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCC
Confidence 457899999999999999999999984
No 433
>KOG2404|consensus
Probab=94.64 E-value=0.037 Score=40.72 Aligned_cols=27 Identities=26% Similarity=0.621 Sum_probs=24.6
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.|+|||+|.|||+|+..+..+|-.|++
T Consensus 11 pvvVIGgGLAGLsasn~iin~gg~V~l 37 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINKGGIVIL 37 (477)
T ss_pred cEEEECCchhhhhhHHHHHhcCCeEEE
Confidence 599999999999999999999887765
No 434
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=94.60 E-value=0.046 Score=37.82 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=25.1
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|.|||.|..|...|..|+++|++|++
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~ 27 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHV 27 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEE
Confidence 489999999999999999999999875
No 435
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.029 Score=41.59 Aligned_cols=26 Identities=42% Similarity=0.608 Sum_probs=22.6
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcC
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEA 75 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g 75 (81)
.++|+|+|||+|-+|..+|..|+--=
T Consensus 352 F~gK~VAVIGGGNSGvEAAIDLAGiv 377 (520)
T COG3634 352 FKGKRVAVIGGGNSGVEAAIDLAGIV 377 (520)
T ss_pred cCCceEEEECCCcchHHHHHhHHhhh
Confidence 45799999999999999999998543
No 436
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=94.58 E-value=0.064 Score=38.23 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=22.8
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCC
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAG 76 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~ 76 (81)
.||+|||+|..|...|+.|+..|+
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~gl 30 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLKNL 30 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC
Confidence 689999999999999999999997
No 437
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=94.58 E-value=0.046 Score=37.81 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=24.9
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|.|||.|..|.+.|..|+++|++|.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~ 28 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYG 28 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEE
Confidence 689999999999999999999998864
No 438
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.55 E-value=0.018 Score=36.11 Aligned_cols=30 Identities=23% Similarity=0.400 Sum_probs=24.7
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTEL 79 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~ 79 (81)
....+|.|||+|-.|-..|..|.++||.|.
T Consensus 8 ~~~l~I~iIGaGrVG~~La~aL~~ag~~v~ 37 (127)
T PF10727_consen 8 AARLKIGIIGAGRVGTALARALARAGHEVV 37 (127)
T ss_dssp ----EEEEECTSCCCCHHHHHHHHTTSEEE
T ss_pred CCccEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence 345799999999999999999999999874
No 439
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=94.52 E-value=0.041 Score=43.39 Aligned_cols=28 Identities=25% Similarity=0.179 Sum_probs=26.2
Q ss_pred CcEEEECCCHHHHHH-HHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGA-AHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~-A~~L~~~g~~v~v 80 (81)
++++|+|-|-+|+++ |..|.++|++|++
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~ 33 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSG 33 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEE
Confidence 579999999999999 9999999999975
No 440
>PRK08017 oxidoreductase; Provisional
Probab=94.46 E-value=0.065 Score=35.51 Aligned_cols=28 Identities=36% Similarity=0.395 Sum_probs=25.3
Q ss_pred CcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
+.++|.|+ |..|...|..|+++|++|++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~ 31 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLA 31 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 46999998 99999999999999998765
No 441
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=94.44 E-value=0.1 Score=29.99 Aligned_cols=29 Identities=34% Similarity=0.577 Sum_probs=24.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcC-CCee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTEL 79 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~ 79 (81)
..++++|+|+|-+|..++..|.+.+ .++.
T Consensus 22 ~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~ 51 (86)
T cd05191 22 KGKTVVVLGAGEVGKGIAKLLADEGGKKVV 51 (86)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 4578999999999999999999984 4444
No 442
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=94.44 E-value=0.069 Score=39.22 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v 80 (81)
.+.+++|+|+|..|..++..|...|. ++++
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v 211 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITV 211 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEE
Confidence 45799999999999999999999997 4544
No 443
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=94.43 E-value=0.056 Score=40.58 Aligned_cols=26 Identities=15% Similarity=0.189 Sum_probs=23.2
Q ss_pred cEEEECCCHHHHHHHHHHhHcC--CCee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEA--GTEL 79 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g--~~v~ 79 (81)
+|.|||.|..|+.+|..|+++| ++|+
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~ 30 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVV 30 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEE
Confidence 6999999999999999999996 5564
No 444
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=94.43 E-value=0.073 Score=33.72 Aligned_cols=26 Identities=23% Similarity=0.298 Sum_probs=24.1
Q ss_pred EEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 55 VAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 55 v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
|+|+|| |..|...+..|.++|++|+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~ 27 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTA 27 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEE
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEE
Confidence 789997 99999999999999999875
No 445
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=94.43 E-value=0.059 Score=39.37 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=23.1
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|.|||.|..|+..|..|+. ||+|+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~Vig 27 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVA 27 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEE
Confidence 58999999999999988885 999875
No 446
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=94.42 E-value=0.071 Score=34.73 Aligned_cols=27 Identities=30% Similarity=0.314 Sum_probs=24.1
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGT-ELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~-v~v 80 (81)
+|+|||+|-.|...|..|++.|.. +++
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~l 28 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKL 28 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEE
Confidence 589999999999999999999986 443
No 447
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.38 E-value=0.068 Score=39.27 Aligned_cols=30 Identities=37% Similarity=0.572 Sum_probs=26.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~v 80 (81)
...+++|+|+|..|..+|..|...| .+|++
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v 209 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILI 209 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEE
Confidence 4579999999999999999999999 55654
No 448
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=94.37 E-value=0.089 Score=34.98 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=24.7
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
...+|+|||.|-.|...|..|++.|..
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~ 46 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVG 46 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCC
Confidence 457899999999999999999999974
No 449
>PRK06223 malate dehydrogenase; Reviewed
Probab=94.35 E-value=0.069 Score=37.25 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=24.3
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAG-TELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~-~v~v 80 (81)
.||.|||+|..|...|..|+++|+ ++.+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L 31 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVL 31 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEE
Confidence 589999999999999999999886 5543
No 450
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=94.33 E-value=0.084 Score=37.27 Aligned_cols=22 Identities=36% Similarity=0.676 Sum_probs=20.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhH
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNK 73 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~ 73 (81)
.++++|||+|++|+..|..|++
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~ 166 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRR 166 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHH
Confidence 4689999999999999999985
No 451
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=94.27 E-value=0.1 Score=32.44 Aligned_cols=30 Identities=33% Similarity=0.447 Sum_probs=25.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcC-CCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEA-GTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g-~~v~v 80 (81)
+.++++|+|+|..|...|..|++.| +++++
T Consensus 18 ~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v 48 (155)
T cd01065 18 KGKKVLILGAGGAARAVAYALAELGAAKIVI 48 (155)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEE
Confidence 3578999999999999999999986 66654
No 452
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=94.21 E-value=0.077 Score=39.23 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=28.2
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+++|+|+|.|+.|...|..|...|.+|++
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV 223 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGARVIV 223 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcCEEEE
Confidence 3578999999999999999999999999876
No 453
>KOG2665|consensus
Probab=94.20 E-value=0.046 Score=40.09 Aligned_cols=31 Identities=23% Similarity=0.381 Sum_probs=26.6
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHc--CCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKE--AGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~--g~~v~v 80 (81)
...++.+|||+|..|++.|.+|.-+ +.+|.|
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~v 78 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAV 78 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEe
Confidence 4568999999999999999999888 777655
No 454
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.19 E-value=0.077 Score=37.72 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=28.8
Q ss_pred cCCCcEEEEC-CCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVG-SGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG-~G~aG~~~A~~L~~~g~~v~v 80 (81)
-.+++|+||| ++..|.-.|..|.++|++|++
T Consensus 156 ~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv 187 (296)
T PRK14188 156 LSGLNAVVIGRSNLVGKPMAQLLLAANATVTI 187 (296)
T ss_pred CCCCEEEEEcCCcchHHHHHHHHHhCCCEEEE
Confidence 4679999999 999999999999999999986
No 455
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.16 E-value=0.096 Score=35.15 Aligned_cols=31 Identities=23% Similarity=0.199 Sum_probs=27.1
Q ss_pred cCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
...++|+|+|+ |..|...+..|+++|++|+.
T Consensus 15 ~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~ 46 (251)
T PLN00141 15 VKTKTVFVAGATGRTGKRIVEQLLAKGFAVKA 46 (251)
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHhCCCEEEE
Confidence 34679999995 99999999999999999864
No 456
>PLN02572 UDP-sulfoquinovose synthase
Probab=94.16 E-value=0.11 Score=38.30 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=28.2
Q ss_pred ccCCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 49 LRTGKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 49 ~~~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
..+.++|+|.|| |..|...+..|+++|++|++
T Consensus 44 ~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~ 76 (442)
T PLN02572 44 SSKKKKVMVIGGDGYCGWATALHLSKRGYEVAI 76 (442)
T ss_pred cccCCEEEEECCCcHHHHHHHHHHHHCCCeEEE
Confidence 345678999997 99999999999999999875
No 457
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=94.12 E-value=0.098 Score=34.84 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=26.5
Q ss_pred CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++++|.|+ |..|...|..|+++|++|++
T Consensus 9 ~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~ 39 (255)
T PRK07523 9 TGRRALVTGSSQGIGYALAEGLAQAGAEVIL 39 (255)
T ss_pred CCCEEEEECCcchHHHHHHHHHHHcCCEEEE
Confidence 3578999997 78999999999999999875
No 458
>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.12 E-value=0.059 Score=39.44 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=24.0
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|+|-|-+|+++|.+|. +|++|++
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~ 27 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDI 27 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEE
Confidence 5899999999999999999 9999875
No 459
>PRK07774 short chain dehydrogenase; Provisional
Probab=94.11 E-value=0.1 Score=34.46 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=26.1
Q ss_pred CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
.++++|.|+ |..|...|.+|+++|++|++
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~~vi~ 35 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGASVVV 35 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 468999998 88999999999999999875
No 460
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=94.09 E-value=0.1 Score=37.01 Aligned_cols=28 Identities=29% Similarity=0.377 Sum_probs=24.8
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
+...||.|||+|..|.+.|+.|+.+|+.
T Consensus 4 ~~~~ki~iiGaG~vG~~~a~~l~~~~~~ 31 (315)
T PRK00066 4 KQHNKVVLVGDGAVGSSYAYALVNQGIA 31 (315)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCC
Confidence 3457999999999999999999999874
No 461
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=94.09 E-value=0.092 Score=36.65 Aligned_cols=30 Identities=20% Similarity=0.236 Sum_probs=26.1
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC-eee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT-ELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~-v~v 80 (81)
..++++|+|+|=++.++++.|++.|.+ ++|
T Consensus 124 ~~k~vlvlGaGGaarai~~aL~~~G~~~i~I 154 (282)
T TIGR01809 124 AGFRGLVIGAGGTSRAAVYALASLGVTDITV 154 (282)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHcCCCeEEE
Confidence 357899999999999999999999975 554
No 462
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=94.09 E-value=0.087 Score=39.17 Aligned_cols=30 Identities=30% Similarity=0.522 Sum_probs=27.8
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++++|+|.|..|...|..|+..|.+|++
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV 240 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIV 240 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 568999999999999999999999998876
No 463
>KOG2495|consensus
Probab=94.08 E-value=0.034 Score=41.77 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.7
Q ss_pred CCcEEEECCCHHHHHHHHHHhH
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNK 73 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~ 73 (81)
--+++||||||.|...|.+|+.
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~D 239 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELAD 239 (491)
T ss_pred eEEEEEECCCCcceeehHHHHH
Confidence 3489999999999999999875
No 464
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=94.06 E-value=0.1 Score=34.46 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=26.1
Q ss_pred CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
.+++++|.|+ |..|...|..|+++|++|++
T Consensus 4 ~~k~vlItGas~gIG~~ia~~l~~~G~~vi~ 34 (248)
T TIGR01832 4 EGKVALVTGANTGLGQGIAVGLAEAGADIVG 34 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 3578999997 67899999999999998865
No 465
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.05 E-value=0.11 Score=34.24 Aligned_cols=29 Identities=21% Similarity=0.263 Sum_probs=26.0
Q ss_pred CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
++.++|+|+ |..|...|..|+++|++|++
T Consensus 5 ~~~~lItG~~g~iG~~~a~~l~~~G~~vi~ 34 (253)
T PRK08217 5 DKVIVITGGAQGLGRAMAEYLAQKGAKLAL 34 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEE
Confidence 568999998 99999999999999998765
No 466
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.02 E-value=0.086 Score=36.22 Aligned_cols=29 Identities=24% Similarity=0.162 Sum_probs=26.0
Q ss_pred CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
.++|+|.|+ |..|...+..|.++|++|++
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~~V~~ 33 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGYTVKA 33 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCCEEEE
Confidence 478999995 99999999999999999864
No 467
>PLN02214 cinnamoyl-CoA reductase
Probab=94.02 E-value=0.12 Score=36.47 Aligned_cols=30 Identities=23% Similarity=0.140 Sum_probs=26.8
Q ss_pred CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
+.++|+|.|+ |..|...+..|.++|++|+.
T Consensus 9 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~ 39 (342)
T PLN02214 9 AGKTVCVTGAGGYIASWIVKILLERGYTVKG 39 (342)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCcCEEEE
Confidence 4578999998 99999999999999999863
No 468
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=94.01 E-value=0.056 Score=40.98 Aligned_cols=25 Identities=48% Similarity=0.521 Sum_probs=21.9
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAG 76 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~ 76 (81)
.+++=|||+|.|+|++|.+|-|.|.
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~ 26 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAK 26 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCC
Confidence 3678899999999999999998764
No 469
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=94.00 E-value=0.092 Score=40.45 Aligned_cols=30 Identities=13% Similarity=0.328 Sum_probs=26.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v 80 (81)
.+++|+|||+|..|+.+|..+.+.|. +|++
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~ 497 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALRHGASNVTC 497 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 46899999999999999999999997 4665
No 470
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=94.00 E-value=0.11 Score=34.18 Aligned_cols=30 Identities=27% Similarity=0.511 Sum_probs=25.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+.++|+|||-|.-|.+-|.-|+..|++|+|
T Consensus 3 ~~k~IAViGyGsQG~a~AlNLrDSG~~V~V 32 (165)
T PF07991_consen 3 KGKTIAVIGYGSQGHAHALNLRDSGVNVIV 32 (165)
T ss_dssp CTSEEEEES-SHHHHHHHHHHHHCC-EEEE
T ss_pred CCCEEEEECCChHHHHHHHHHHhCCCCEEE
Confidence 368999999999999999999999999886
No 471
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=93.97 E-value=0.11 Score=34.97 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=25.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
...+|+|||+|-.|...|..|++.|..
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~Gvg 53 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARSGVG 53 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHcCCC
Confidence 457899999999999999999999987
No 472
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.96 E-value=0.11 Score=34.67 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=26.2
Q ss_pred CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
+++++|+|+ |.-|...+.+|+++|++|++
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~G~~v~~ 36 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAEGATVVV 36 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHcCCEEEE
Confidence 578999999 78999999999999999875
No 473
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=93.93 E-value=0.11 Score=35.12 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=28.5
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
-.+++|+|||||-.|..=|..|.+.|-+|+|
T Consensus 10 l~~k~VlvvGgG~va~rKa~~ll~~ga~v~V 40 (210)
T COG1648 10 LEGKKVLVVGGGSVALRKARLLLKAGADVTV 40 (210)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHhcCCEEEE
Confidence 4578999999999999999999999999887
No 474
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=93.93 E-value=0.11 Score=38.80 Aligned_cols=31 Identities=23% Similarity=0.389 Sum_probs=25.6
Q ss_pred cCCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001 50 RTGKKVAIVGSGPSGLGAAHQLNKEAG-TELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v 80 (81)
...++|+|||+|..|+.+|..+.+.|- .|++
T Consensus 281 ~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~v 312 (485)
T TIGR01317 281 AKGKKVVVIGGGDTGADCVGTSLRHGAASVHQ 312 (485)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCEEEE
Confidence 356899999999999999888888875 4654
No 475
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=93.93 E-value=0.092 Score=35.51 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=24.6
Q ss_pred cEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|+|+ |..|...+.+|.++|++|++
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~ 28 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVA 28 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEE
Confidence 5899997 99999999999999999874
No 476
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=93.93 E-value=0.093 Score=38.10 Aligned_cols=27 Identities=33% Similarity=0.510 Sum_probs=25.4
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|+|+|..|...|..|.++|++|++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~v 28 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTV 28 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEE
Confidence 689999999999999999999999876
No 477
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.88 E-value=0.11 Score=36.64 Aligned_cols=31 Identities=29% Similarity=0.304 Sum_probs=27.7
Q ss_pred cCCCcEEEECCCH-HHHHHHHHHhHcCCCeee
Q psy11001 50 RTGKKVAIVGSGP-SGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 50 ~~~~~v~viG~G~-aG~~~A~~L~~~g~~v~v 80 (81)
-.+++++|+|.|- +|...|..|.++|..|++
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv 188 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANATVTI 188 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCEEEE
Confidence 4568999999997 999999999999998875
No 478
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=93.87 E-value=0.11 Score=37.38 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.6
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
...+|+|||+|-.|...|..|++.|..
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg 49 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVG 49 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCC
Confidence 357899999999999999999999984
No 479
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.86 E-value=0.11 Score=37.82 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=26.0
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcC-------CCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEA-------GTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g-------~~v~v 80 (81)
...+|.|||+|.-|.+.|..|+++| ++|.+
T Consensus 10 ~~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~l 46 (365)
T PTZ00345 10 GPLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRM 46 (365)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEE
Confidence 3458999999999999999999998 67765
No 480
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.86 E-value=0.089 Score=40.03 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=26.3
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+++|+|+|+.|+.++..+...|..|++
T Consensus 164 ~akVlViGaG~iGl~Aa~~ak~lGA~V~v 192 (511)
T TIGR00561 164 PAKVLVIGAGVAGLAAIGAANSLGAIVRA 192 (511)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 46999999999999999999999988765
No 481
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=93.85 E-value=0.1 Score=37.33 Aligned_cols=27 Identities=33% Similarity=0.454 Sum_probs=23.6
Q ss_pred cEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+|+|+|+||.||.++..+...|...++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Vi 197 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVI 197 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEE
Confidence 799999999999999988888876544
No 482
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=93.82 E-value=0.11 Score=35.11 Aligned_cols=29 Identities=41% Similarity=0.629 Sum_probs=26.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTEL 79 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~ 79 (81)
.+++++|.|.|-.|..+|..|.++|.+++
T Consensus 22 ~g~~vaIqGfGnVG~~~a~~L~~~G~~vV 50 (217)
T cd05211 22 EGLTVAVQGLGNVGWGLAKKLAEEGGKVL 50 (217)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEE
Confidence 46899999999999999999999998765
No 483
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=93.77 E-value=0.072 Score=39.07 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=24.7
Q ss_pred cEEEECCCHHHHH-HHHHHhHcCCCeee
Q psy11001 54 KVAIVGSGPSGLG-AAHQLNKEAGTELI 80 (81)
Q Consensus 54 ~v~viG~G~aG~~-~A~~L~~~g~~v~v 80 (81)
++.+||.|-+|++ +|.+|+++|++|++
T Consensus 1 ~~~~iGiggsGm~~la~~L~~~G~~v~~ 28 (448)
T TIGR01082 1 KIHFVGIGGIGMSGIAEILLNRGYQVSG 28 (448)
T ss_pred CEEEEEECHHHHHHHHHHHHHCCCeEEE
Confidence 4789999999998 99999999999875
No 484
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=93.76 E-value=0.14 Score=36.58 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=26.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
+.++|+|+|+|..|...+..+.+.|++|++
T Consensus 11 ~~~~ilIiG~g~~~~~~~~a~~~~G~~v~~ 40 (395)
T PRK09288 11 SATRVMLLGSGELGKEVAIEAQRLGVEVIA 40 (395)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 456899999999999999999999998865
No 485
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=93.75 E-value=0.11 Score=38.62 Aligned_cols=30 Identities=17% Similarity=0.378 Sum_probs=26.5
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v 80 (81)
..++++|||+|..|+.+|..+.+.|. +|+|
T Consensus 281 ~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtv 311 (467)
T TIGR01318 281 EGKRVVVLGGGDTAMDCVRTAIRLGAASVTC 311 (467)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEE
Confidence 46899999999999999999999995 5765
No 486
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=93.74 E-value=0.06 Score=39.84 Aligned_cols=25 Identities=32% Similarity=0.517 Sum_probs=21.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAG 76 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~ 76 (81)
...++|+|||+.|...|.+|+..-+
T Consensus 155 ~lti~IvGgG~TGVElAgeL~~~~~ 179 (405)
T COG1252 155 LLTIVIVGGGPTGVELAGELAERLH 179 (405)
T ss_pred eeEEEEECCChhHHHHHHHHHHHHH
Confidence 3579999999999999999987644
No 487
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.73 E-value=0.13 Score=36.59 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=24.1
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTE 78 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v 78 (81)
..||.|||+|..|.+.|+.|+.+|...
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~ 29 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLAD 29 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCC
Confidence 359999999999999999999998754
No 488
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=93.73 E-value=0.12 Score=36.15 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=24.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~ 77 (81)
...+|+|+|.|-.|..+|..|++.|..
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~GVg 55 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALARTGIG 55 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcCCC
Confidence 457899999999999999999999954
No 489
>PLN02583 cinnamoyl-CoA reductase
Probab=93.72 E-value=0.13 Score=35.47 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=26.0
Q ss_pred CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
++.|+|.|+ |..|...+..|.++|++|++
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~ 35 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSRGYTVHA 35 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 468999997 89999999999999999864
No 490
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=93.68 E-value=0.11 Score=32.79 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=22.2
Q ss_pred cEEEECC-CHHHHHHHHHHhHcCCC
Q psy11001 54 KVAIVGS-GPSGLGAAHQLNKEAGT 77 (81)
Q Consensus 54 ~v~viG~-G~aG~~~A~~L~~~g~~ 77 (81)
||.|||+ |..|.+.|+.|...++-
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~ 26 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLA 26 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTS
T ss_pred EEEEECCCChHHHHHHHHHHhCCCC
Confidence 7999999 99999999999999864
No 491
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=93.63 E-value=0.14 Score=35.47 Aligned_cols=28 Identities=25% Similarity=0.162 Sum_probs=24.6
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTEL 79 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~ 79 (81)
..+++|+|+|+.|+.++..+..+|.+++
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v 172 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPP 172 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceE
Confidence 5689999999999999998888998854
No 492
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=93.61 E-value=0.14 Score=36.06 Aligned_cols=30 Identities=17% Similarity=0.070 Sum_probs=26.5
Q ss_pred CCCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
...+|+|.|+ |..|...+.+|+++|++|++
T Consensus 9 ~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~ 39 (353)
T PLN02896 9 ATGTYCVTGATGYIGSWLVKLLLQRGYTVHA 39 (353)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEE
Confidence 4568999996 99999999999999999874
No 493
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=93.60 E-value=0.11 Score=35.92 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=25.5
Q ss_pred CcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 53 ~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+|.|||.|..|...|..|++.|++|++
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~ 30 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVV 30 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEE
Confidence 3699999999999999999999998865
No 494
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=93.59 E-value=0.15 Score=34.37 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=25.2
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCe
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTE 78 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v 78 (81)
...+|+|+|+|-.|...|..|++.|..-
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~ 47 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGK 47 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCE
Confidence 3578999999999999999999999863
No 495
>PTZ00117 malate dehydrogenase; Provisional
Probab=93.58 E-value=0.13 Score=36.48 Aligned_cols=26 Identities=23% Similarity=0.358 Sum_probs=23.4
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAG 76 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~ 76 (81)
+..+|+|||+|..|.+.|+.|+..|+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~ 29 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNL 29 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCC
Confidence 35699999999999999999999994
No 496
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.58 E-value=0.15 Score=36.32 Aligned_cols=26 Identities=23% Similarity=0.328 Sum_probs=23.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCC
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAG 76 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~ 76 (81)
...+|.|+|+|.-|.+.|..|+++|.
T Consensus 6 ~~mkI~IiGaGa~G~alA~~La~~g~ 31 (341)
T PRK12439 6 REPKVVVLGGGSWGTTVASICARRGP 31 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCC
Confidence 34589999999999999999999994
No 497
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=93.57 E-value=0.15 Score=35.91 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=26.3
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
.+.+|+|+|+|+.|+.++..+...|.+|++
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~ 201 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYV 201 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEE
Confidence 457899999999999999999999988664
No 498
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.57 E-value=0.13 Score=36.14 Aligned_cols=29 Identities=28% Similarity=0.201 Sum_probs=26.3
Q ss_pred CCcEEEECC-CHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGS-GPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~-G~aG~~~A~~L~~~g~~v~v 80 (81)
+++|+|.|+ |..|...+..|+++|++|++
T Consensus 4 ~k~ilItGatG~IG~~l~~~L~~~G~~V~~ 33 (349)
T TIGR02622 4 GKKVLVTGHTGFKGSWLSLWLLELGAEVYG 33 (349)
T ss_pred CCEEEEECCCChhHHHHHHHHHHCCCEEEE
Confidence 478999997 99999999999999999864
No 499
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=93.57 E-value=0.21 Score=37.81 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=27.0
Q ss_pred CCcEEEECCCHHHHHHHHHHhHcCCCeee
Q psy11001 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80 (81)
Q Consensus 52 ~~~v~viG~G~aG~~~A~~L~~~g~~v~v 80 (81)
..+++|+|.|..|...|..|.++|+++++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvv 445 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGIPLVV 445 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCCCEEE
Confidence 46899999999999999999999999876
No 500
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=93.56 E-value=0.12 Score=36.52 Aligned_cols=30 Identities=37% Similarity=0.462 Sum_probs=24.9
Q ss_pred CCCcEEEECCCHHHHHHHHHHhHcCC-Ceee
Q psy11001 51 TGKKVAIVGSGPSGLGAAHQLNKEAG-TELI 80 (81)
Q Consensus 51 ~~~~v~viG~G~aG~~~A~~L~~~g~-~v~v 80 (81)
...+|+|||+|..|..++..|..+|. +|++
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v 207 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITI 207 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEE
Confidence 46799999999999999999998774 4543
Done!