RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11001
(81 letters)
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 148 bits (376), Expect = 5e-45
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 3/76 (3%)
Query: 1 FTGRVCPAP--CEGACVLGIN-EPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAI 57
GR+CP CEG CV+ + AVTI ++E I D A++QGW+KP P+ G V +
Sbjct: 68 ICGRICPQDRLCEGNCVIEQSTHGAVTIGSVEKYINDTAWDQGWVKPRTPSRELGLSVGV 127
Query: 58 VGSGPSGLGAAHQLNK 73
+G+GP+GL AA +L
Sbjct: 128 IGAGPAGLAAAEELRA 143
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 91.2 bits (225), Expect = 8e-24
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 11 EGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQ 70
+ A L + PA T ++++ +D + G P P K++ IVG+G +GL A
Sbjct: 8 QLARELLLVGPAPTNEDLKLRYLDVLIDNGLNPPGPP-----KRILIVGAGIAGLVAGDL 62
Query: 71 LNKEAGTE 78
L + AG +
Sbjct: 63 LTR-AGHD 69
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin,
iron-sulfur clusters, pyrimidine catabolism,
5-fluorouracil degradation, oxidoreductase; HET: FMN
FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1
c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Length = 1025
Score = 83.7 bits (207), Expect = 7e-21
Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 11/82 (13%)
Query: 3 GRVCPAP--CEGACVLG-INEPAVTIKNIECAIIDHAFEQGWIKPEIPTL--------RT 51
G VCP C G C L E ++ I ++ + + P L
Sbjct: 127 GMVCPTSDLCVGGCNLYATEEGSINIGGLQQFASEVFKAMNIPQIRNPCLPSQEKMPEAY 186
Query: 52 GKKVAIVGSGPSGLGAAHQLNK 73
K+A++G+GP+ + A L +
Sbjct: 187 SAKIALLGAGPASISCASFLAR 208
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 46.8 bits (111), Expect = 6e-08
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 48 TLRTGKKVAIVGSGPSGLGAAHQLNK 73
T ++ +VGSGP+G A L K
Sbjct: 2 TQEQTPQICVVGSGPAGFYTAQHLLK 27
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 46.4 bits (110), Expect = 1e-07
Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 48 TLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
++ ++AI+G+GP+GL A L ++AG
Sbjct: 2 SISKDSRIAIIGAGPAGLAAGMYL-EQAG 29
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 43.7 bits (102), Expect = 7e-07
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAG 76
V ++G+GP+GLGAA +LN+ G
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDG 34
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 42.9 bits (100), Expect = 1e-06
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80
K+ I+G+GP+GLGAA +L +
Sbjct: 10 PKIVIIGAGPTGLGAAVRLTELGYKNWH 37
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 42.2 bits (99), Expect = 3e-06
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
I ++ V ++G GP+GL +A +L ++AG
Sbjct: 5 IGKVKGSHSVVVLGGGPAGLCSAFEL-QKAG 34
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 41.5 bits (97), Expect = 5e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 48 TLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
L T +K+AI+G+GPSGL A L E + +
Sbjct: 2 CLPTIRKIAIIGAGPSGLVTAKALLAEKAFDQV 34
Score = 31.9 bits (72), Expect = 0.013
Identities = 7/25 (28%), Positives = 9/25 (36%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEA 75
G+ V +VG S L A
Sbjct: 211 VGESVLVVGGASSANDLVRHLTPVA 235
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 40.6 bits (95), Expect = 9e-06
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
+ + K V IVG+G +GL AA+ L AG
Sbjct: 23 ARNGLKATSNPKHVVIVGAGMAGLSAAYVL-AGAG 56
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 40.1 bits (93), Expect = 2e-05
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 12 GACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
G G + A T I+ +I+ + ++ I T V +VG+G +GL AA+++
Sbjct: 1 GRGSAGYDLNAFTFDPIKESIVSREMTRRYMTDMITYAET--DVVVVGAGSAGLSAAYEI 58
Query: 72 NKEAG 76
+K
Sbjct: 59 SKNPN 63
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 39.7 bits (93), Expect = 2e-05
Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 3/31 (9%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
+PTL+ + VAIVG+GPSGL AA L ++AG
Sbjct: 1 VPTLQ--RDVAIVGAGPSGLAAATAL-RKAG 28
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 39.3 bits (92), Expect = 3e-05
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 3/62 (4%)
Query: 13 ACVLGINEPAVTIKNIECAI---IDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAH 69
C + I+ + + C + +GW + + V IVG+GPSG AA
Sbjct: 347 GCNVCISRWEIGGPPMICTQNATAGEEYRRGWHPEKFRQTKNKDSVLIVGAGPSGSEAAR 406
Query: 70 QL 71
L
Sbjct: 407 VL 408
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 39.2 bits (91), Expect = 3e-05
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAG 76
K V I+G G +GL AA + KE
Sbjct: 6 KHVVIIGGGITGLAAAFYMEKEIK 29
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 38.9 bits (90), Expect = 3e-05
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNK 73
G+ V ++G G SGL A++ L++
Sbjct: 2 GRTVVVLGGGISGLAASYHLSR 23
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 38.9 bits (90), Expect = 3e-05
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEA 75
+ K++ IVG G +GL AA+ +
Sbjct: 3 SSKRLVIVGGGITGLAAAYYAERAF 27
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A*
2yr5_A* 3ayl_A*
Length = 721
Score = 39.1 bits (89), Expect = 4e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 50 RTGKKVAIVGSGPSGLGAAHQLNKEA 75
++AIVG G G+ A ++L + A
Sbjct: 54 AGNYRIAIVGGGAGGIAALYELGRLA 79
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 38.7 bits (90), Expect = 4e-05
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAG 76
G +V +VG+G SG+ AA +L EAG
Sbjct: 3 VGPRVIVVGAGMSGISAAKRL-SEAG 27
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 39.0 bits (90), Expect = 4e-05
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNK 73
+ K+VA++G+G SGL AA++L
Sbjct: 12 SAKRVAVIGAGVSGLAAAYKLKI 34
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein
structure initiative, TB structural genomics
consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium
tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A*
2c7g_A*
Length = 456
Score = 38.7 bits (90), Expect = 5e-05
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 54 KVAIVGSGPSGLGAAHQLNK 73
+AIVGSGPS AA L K
Sbjct: 5 YIAIVGSGPSAFFAAASLLK 24
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 38.4 bits (89), Expect = 6e-05
Identities = 13/27 (48%), Positives = 14/27 (51%)
Query: 47 PTLRTGKKVAIVGSGPSGLGAAHQLNK 73
TG VA+VG G SGL AH L
Sbjct: 11 MPRTTGMNVAVVGGGISGLAVAHHLRS 37
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 38.5 bits (89), Expect = 6e-05
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 53 KKVAIVGSGPSGLGAAHQLNK 73
KK+ IVG+G SG QL +
Sbjct: 4 KKILIVGAGFSGAVIGRQLAE 24
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 38.1 bits (88), Expect = 7e-05
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 53 KKVAIVGSGPSGLGAAHQLNK 73
IVGSG G A++L K
Sbjct: 2 YDYIIVGSGLFGAVCANELKK 22
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 38.0 bits (88), Expect = 8e-05
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKE 74
++AI+G+GPSG+
Sbjct: 3 TRIAILGAGPSGMAQLRAFQSA 24
Score = 26.1 bits (57), Expect = 1.1
Identities = 8/25 (32%), Positives = 9/25 (36%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEA 75
K V +VGS S Q K
Sbjct: 196 KDKTVLLVGSSYSAEDIGSQCYKYG 220
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 37.6 bits (86), Expect = 1e-04
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 35 HAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKE 74
H + P K++ IVG+G +GL L +
Sbjct: 7 HHHHSSGLVPRGS--HMKKRIGIVGAGTAGLHLGLFLRQH 44
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 37.1 bits (85), Expect = 2e-04
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAG 76
KKV I+G+G +GL AA L + G
Sbjct: 7 AKKKVIIIGAGIAGLKAASTL-HQNG 31
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 37.1 bits (85), Expect = 2e-04
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAG 76
+ +VGSG GL A ++ +
Sbjct: 8 FDLFVVGSGFFGLTIAERVATQLD 31
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 36.3 bits (84), Expect = 3e-04
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 55 VAIVGSGPSGLGAAH---QLNKEAGTEL 79
V IVG+GP+GL AA QL + +L
Sbjct: 38 VVIVGAGPAGLSAATRLKQLAAQHEKDL 65
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 36.4 bits (85), Expect = 3e-04
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 54 KVAIVGSGPSGLGAAHQLNKEAGTEL 79
++G+G G+ A H+L+ E G
Sbjct: 10 DAVVIGAGFGGIYAVHKLHHELGLTT 35
Score = 29.5 bits (67), Expect = 0.084
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 51 TGKKVAIVGSGPSG 64
G++V ++G+G +G
Sbjct: 177 AGRRVGVIGTGSTG 190
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione
reductase type II family, thiazole synthase,
mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces
cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 36.3 bits (83), Expect = 3e-04
Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 1 FTGRVCPAPCEGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
C V + I + + A + K + V IVG+
Sbjct: 16 HLNSTPVTHCLSDIVKKEDWSDFKFAPIRESTVSRAMTSRYFKDLDKFAVS--DVIIVGA 73
Query: 61 GPSGLGAAHQLNKEA 75
G SGL AA+ + K
Sbjct: 74 GSSGLSAAYVIAKNR 88
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 36.2 bits (82), Expect = 3e-04
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKE 74
+AI+G+G +GL AA L
Sbjct: 3 VPIAIIGTGIAGLSAAQALTAA 24
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 36.1 bits (84), Expect = 3e-04
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Query: 26 KNIECAI---IDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAA 68
I C + + +GW I + +V +VG+GPSGL AA
Sbjct: 362 SPIRCTQNPSMGEEWRRGWHPERIRAKESDARVLVVGAGPSGLEAA 407
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 35.9 bits (82), Expect = 4e-04
Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 13/73 (17%)
Query: 2 TGRVCPAPCEGACVLG-INEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGS 60
+ P A I E V+ A+ F E + IVG+
Sbjct: 40 LLELMPTLGTDAFTFSPIRESTVSR-----AMTRRYFADLDAHAET-------DIVIVGA 87
Query: 61 GPSGLGAAHQLNK 73
G GL AA+ L+
Sbjct: 88 GSCGLSAAYVLST 100
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 35.4 bits (82), Expect = 6e-04
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V ++G G SGL A + L + +G
Sbjct: 6 VVVIGGGQSGLSAGYFL-RRSG 26
Score = 27.3 bits (61), Expect = 0.46
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT 77
G +VAI+G G SG +++ A T
Sbjct: 162 AGMRVAIIGGGNSGAQILAEVSTVAET 188
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 35.2 bits (82), Expect = 7e-04
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Query: 54 KVAIVGSGPSGLGAAHQLNKEAG 76
V +VG+G SGL A ++L +E G
Sbjct: 18 DVLVVGAGFSGLYALYRL-RELG 39
Score = 30.2 bits (69), Expect = 0.049
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 51 TGKKVAIVGSGPSG 64
+G++V ++G+G SG
Sbjct: 185 SGQRVGVIGTGSSG 198
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 35.2 bits (81), Expect = 8e-04
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAG 76
V +VG G SG+ AA L ++G
Sbjct: 5 CDVVVVGGGISGMAAAKLL-HDSG 27
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 35.1 bits (80), Expect = 8e-04
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 53 KKVAIVGSGPSGLGAAHQLNK 73
IVG+G +G A +L
Sbjct: 30 FDYLIVGAGFAGSVLAERLAS 50
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 35.3 bits (81), Expect = 8e-04
Identities = 9/38 (23%), Positives = 12/38 (31%)
Query: 43 KPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
E V ++G G GL A L L+
Sbjct: 30 NIEDTDKDGPWDVIVIGGGYCGLTATRDLTVAGFKTLL 67
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 35.0 bits (81), Expect = 8e-04
Identities = 7/21 (33%), Positives = 11/21 (52%)
Query: 54 KVAIVGSGPSGLGAAHQLNKE 74
+ +VG+G GL A L +
Sbjct: 2 RAVVVGAGLGGLLAGAFLARN 22
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 35.1 bits (81), Expect = 0.001
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 47 PTLRTGKKVAIVGSGPSGLGAAHQLNK 73
L + K VAI+G GP GL A L +
Sbjct: 21 MNLLSDKNVAIIGGGPVGLTMAKLLQQ 47
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 34.7 bits (78), Expect = 0.001
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAGTEL 79
+V IVG+G +G A L ++ L
Sbjct: 2 AQVLIVGAGMTGSLCAALLRRQTSGPL 28
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 34.9 bits (81), Expect = 0.001
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 54 KVAIVGSGPSGLGAAHQLNKEAG 76
V +VG+G +GL A H+ + G
Sbjct: 23 DVVVVGAGIAGLYAIHRF-RSQG 44
Score = 29.5 bits (67), Expect = 0.078
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 51 TGKKVAIVGSGPSG 64
TGK+V ++G+G SG
Sbjct: 190 TGKRVGVIGTGSSG 203
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 34.5 bits (80), Expect = 0.001
Identities = 6/23 (26%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
Query: 54 KVAIVGSGPSGLGAAHQLNKEAG 76
++G+G +G+ A + +AG
Sbjct: 11 DAVVIGAGVTGIYQAFLI-NQAG 32
Score = 30.3 bits (69), Expect = 0.050
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 51 TGKKVAIVGSGPSG 64
TGK+V ++G+G +G
Sbjct: 184 TGKRVGVIGTGATG 197
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 34.5 bits (78), Expect = 0.002
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 43 KPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
+ + + KV I+GSG SGL AA QL + G ++
Sbjct: 98 RIKPLPTKKTGKVIIIGSGVSGLAAARQL-QSFGMDVT 134
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 34.4 bits (79), Expect = 0.002
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
VAI+G+G +G+G A L K+ G
Sbjct: 7 VAIIGAGAAGIGMAITL-KDFG 27
Score = 27.8 bits (62), Expect = 0.27
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGT 77
+ ++G SG AA+QL K
Sbjct: 165 NKGQYVVIGGNESGFDAAYQLAKNGSD 191
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 34.0 bits (78), Expect = 0.002
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
+VG G SGL AA L AG
Sbjct: 4 AIVVGGGFSGLKAARDL-TNAG 24
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 33.8 bits (76), Expect = 0.003
Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 41 WIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
IKP KV I+GSG SGL AA QL + G ++
Sbjct: 269 RIKPLPTKKT--GKVIIIGSGVSGLAAARQL-QSFGMDVT 305
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 33.5 bits (77), Expect = 0.003
Identities = 11/23 (47%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Query: 49 LRTGKKVAIVGSGPSGLGAAHQL 71
++T +VAI+G+GPSGL L
Sbjct: 1 MKT--QVAIIGAGPSGLLLGQLL 21
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 33.4 bits (76), Expect = 0.003
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V IVG GP+GL A QL
Sbjct: 35 VLIVGCGPAGLTLAAQLAAFPD 56
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for
structural genomics; HET: MSE; 1.50A {Streptococcus
agalactiae}
Length = 451
Score = 33.3 bits (77), Expect = 0.004
Identities = 10/22 (45%), Positives = 12/22 (54%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNK 73
KKV ++G SG AA L K
Sbjct: 9 NKKVLVLGLARSGEAAARLLAK 30
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding,
cell cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A
{Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A*
2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A*
2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A*
2uag_A*
Length = 439
Score = 32.9 bits (76), Expect = 0.004
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNK 73
GK V I+G G +GL
Sbjct: 5 GKNVVIIGLGLTGLSCVDFFLA 26
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 32.7 bits (74), Expect = 0.006
Identities = 10/54 (18%), Positives = 19/54 (35%)
Query: 18 INEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
+E A+ K + + + ++ ++G GP GL A L
Sbjct: 73 GDETALLAKFANDPHVRQTPDMEYKFVAKAPENLTERPIVIGFGPCGLFAGLVL 126
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 32.6 bits (74), Expect = 0.007
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80
VAI+G GP+G+GAA +L + LI
Sbjct: 110 DVAIIGGGPAGIGAALELQQYLTVALI 136
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 32.7 bits (74), Expect = 0.007
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 55 VAIVGSGPSGLGAAHQL 71
V IVG+GP+GL AA L
Sbjct: 11 VLIVGAGPAGLMAARVL 27
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 32.3 bits (74), Expect = 0.008
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 14/54 (25%)
Query: 27 NIECAIIDHAFEQGWI------------KPEIPTLRTGKKVAIVGSGPSGLGAA 68
N C +D F K I K +A+VG+GP+GL A
Sbjct: 338 NQAC--LDQIFVGKVTSCLVNPRACHETKMPILPAVQKKNLAVVGAGPAGLAFA 389
Score = 26.9 bits (60), Expect = 0.61
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 50 RTGKKVAIVGSGPSGLGAAHQL 71
G KVAI+G G G A L
Sbjct: 492 PVGNKVAIIGCGGIGFDTAMYL 513
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 32.1 bits (73), Expect = 0.010
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 55 VAIVGSGPSGLGAAHQLNKE 74
V ++G+GP+G AA +NK
Sbjct: 8 VLVIGAGPAGTVAASLVNKS 27
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 31.8 bits (72), Expect = 0.011
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 55 VAIVGSGPSGLGAAHQLNKE 74
+ ++G GP G A +
Sbjct: 10 LIVIGGGPGGSTLASFVAMR 29
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 31.6 bits (72), Expect = 0.013
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 49 LRTGKKVAIVGSGPSGLGAAHQLNKEAGTEL 79
+R V I+G+G G+ AA+++ + G+
Sbjct: 1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGH 31
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 31.5 bits (71), Expect = 0.015
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 55 VAIVGSGPSGLGAAHQLNKE 74
VAI+G GP+G A L+K
Sbjct: 26 VAIIGGGPAGSVAGLTLHKL 45
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 31.7 bits (71), Expect = 0.016
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 54 KVAIVGSGPSGLGAAHQLNK 73
K+ ++G+GP+GL A QL +
Sbjct: 2 KILVIGAGPAGLVFASQLKQ 21
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 31.6 bits (71), Expect = 0.018
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 55 VAIVGSGPSGLGAAHQL 71
+ VG GPS + A L
Sbjct: 33 LIGVGFGPSNIALAIAL 49
Score = 27.0 bits (59), Expect = 0.63
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 1/29 (3%)
Query: 52 GKKVAIVGSGPSGLG-AAHQLNKEAGTEL 79
K+AI+G G S + +
Sbjct: 227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQA 255
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 30.8 bits (70), Expect = 0.025
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAGTEL 79
KV ++G L AA+ L + G++
Sbjct: 2 TKVLVLGGRFGALTAAYTLKRLVGSKA 28
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 31.0 bits (69), Expect = 0.026
Identities = 12/22 (54%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V IVGSGP G A +L AG
Sbjct: 49 VVIVGSGPIGCTYARELV-GAG 69
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 30.9 bits (68), Expect = 0.033
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 35 HAFEQGWIKPEIPTLRTG-KKVAIVGSGPSGLGAAHQLNKEAGTEL 79
H + P + K+ IVG G +G AA L K
Sbjct: 7 HHHHSSGLVPRGSHMSGKIDKILIVGGGTAGWMAASYLGKALQGTA 52
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 30.8 bits (68), Expect = 0.035
Identities = 8/27 (29%), Positives = 11/27 (40%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAGTEL 79
+ V IVG G +G A L +
Sbjct: 3 RSVVIVGGGTAGWMTASYLKAAFDDRI 29
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 30.7 bits (69), Expect = 0.037
Identities = 9/14 (64%), Positives = 12/14 (85%)
Query: 55 VAIVGSGPSGLGAA 68
V +VG+GP+GL AA
Sbjct: 131 VLVVGAGPAGLAAA 144
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 30.4 bits (67), Expect = 0.039
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAGTEL 79
K + IVG G +G AA L + +
Sbjct: 6 KNIVIVGGGTAGWMAASYLVRALQQQA 32
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 30.1 bits (68), Expect = 0.046
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEAG 76
G+KV +VG G G AA +
Sbjct: 2 GRKVVVVGGGTGGATAAKYIKLADP 26
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 30.0 bits (68), Expect = 0.051
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 55 VAIVGSGPSGLGAAHQL 71
V +VG+G GL A L
Sbjct: 8 VLVVGAGLGGLSTAMFL 24
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 30.0 bits (68), Expect = 0.056
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 55 VAIVGSGPSGLGAAHQLNKE 74
V +VG GP G AA K
Sbjct: 7 VLVVGGGPGGSTAARYAAKY 26
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 29.7 bits (67), Expect = 0.060
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 55 VAIVGSGPSGLGAAHQL 71
V I+G GP G+ A L
Sbjct: 29 VLILGGGPVGMALALDL 45
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 29.7 bits (67), Expect = 0.062
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V +VGSG +G AA ++G
Sbjct: 129 VVVVGSGGAGFSAAISA-TDSG 149
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 29.5 bits (67), Expect = 0.067
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 10/47 (21%)
Query: 30 CAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
C + H + IK G VAI+G G GL QL + AG
Sbjct: 170 CCL--HGVDLSGIKA-------GSTVAILGGGVIGLLTV-QLARLAG 206
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 29.7 bits (67), Expect = 0.074
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 55 VAIVGSGPSGLGAAHQL 71
V +VG GP GL A +L
Sbjct: 52 VVVVGGGPVGLMLAGEL 68
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 29.7 bits (65), Expect = 0.074
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKE 74
++ IVG G +G A L E
Sbjct: 8 TEIIIVGGGTAGWITAGLLAAE 29
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 29.6 bits (67), Expect = 0.081
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 54 KVAIVGSGPSGLGAAHQL 71
K ++G+G GL +A +L
Sbjct: 2 KTVVIGAGLGGLLSAARL 19
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 29.6 bits (67), Expect = 0.081
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 55 VAIVGSGPSGLGAAHQL 71
V +VG+GP+GL A +L
Sbjct: 15 VIVVGAGPAGLMLAGEL 31
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 29.3 bits (66), Expect = 0.081
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAG 76
K V ++G G G+ A+ L
Sbjct: 3 KHVVVIGGGVGGIATAYNLRNLMP 26
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.30A {Streptococcus mutans}
Length = 192
Score = 29.3 bits (66), Expect = 0.085
Identities = 10/54 (18%), Positives = 16/54 (29%), Gaps = 8/54 (14%)
Query: 21 PAVTIKNIECAIIDHA-FEQGWIKPEIPTLRTGKKVAIVGS--GPSGLGAAHQL 71
P +KN+ +D P P++ K V + G S
Sbjct: 83 PGP-VKNL----LDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASPEEVFEDY 131
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 29.3 bits (66), Expect = 0.088
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V +VG+G +G A+ K+AG
Sbjct: 124 VLVVGAGSAGFNASLAA-KKAG 144
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide
binding, FAD, flavoprotein, oxidoreductase; HET: FAD;
1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Length = 323
Score = 29.4 bits (67), Expect = 0.094
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 44 PEIPTLRTGK--KVAIVGSGPSGLGAA 68
P +++ G+ V IVG GP+ GAA
Sbjct: 5 PRTTSVKPGEKFDVIIVGLGPAAYGAA 31
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 29.2 bits (66), Expect = 0.099
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 55 VAIVGSGPSGLGAAHQL 71
V +VG+GP+G+ A +L
Sbjct: 14 VIVVGAGPAGMMLAGEL 30
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 29.3 bits (66), Expect = 0.10
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V I+GSG +GL AA ++AG
Sbjct: 129 VVIIGSGGAGLAAAVSA-RDAG 149
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 29.0 bits (65), Expect = 0.11
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 55 VAIVGSGPSGLGAAHQL 71
V I+G G +G AA+QL
Sbjct: 9 VLIIGGGFAGSSAAYQL 25
>1yrl_A Ketol-acid reductoisomerase; branched-chain amino acid
biosynthesis, knotted protein, oxidoreductase; 2.60A
{Escherichia coli}
Length = 491
Score = 28.9 bits (65), Expect = 0.12
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 52 GKKVAIVGSGPSGLGAAHQLN-KEAGTELI 80
GKKV IVG G GL LN +++G ++
Sbjct: 37 GKKVVIVGCGAQGL--NQGLNMRDSGLDIS 64
>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine
reductase fold (domain II), alpha/beta protein; 1.70A
{Saccharomyces cerevisiae}
Length = 467
Score = 29.0 bits (64), Expect = 0.13
Identities = 8/38 (21%), Positives = 11/38 (28%)
Query: 43 KPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
I GK V ++GSG L +
Sbjct: 14 SGHIEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVT 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 28.8 bits (65), Expect = 0.16
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
Query: 12 GACVLGINEPAVTIKN---IECAIIDHAF-EQGWIKPEIPTLRTGKKVAIVGSGPSGLG 66
G CV A+ I N A + H + + +PT R G+ + +V G +G+G
Sbjct: 59 GICVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLV--GTNGIG 115
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase,
NADP+ B reduced izoalloxazine bending, oxidoreductase;
HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A*
3ish_A*
Length = 311
Score = 28.6 bits (65), Expect = 0.17
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 54 KVAIVGSGPSGLGAA 68
AI+G GP+GL A
Sbjct: 3 DCAIIGGGPAGLSAG 17
>2xdq_B Light-independent protochlorophyllide reductase S; oxidoreductase,
DPOR, (bacterio)chlorophyll biosynthesis,
photosynthesis; 2.40A {Thermosynechococcus elongatus}
Length = 511
Score = 28.6 bits (64), Expect = 0.17
Identities = 8/40 (20%), Positives = 15/40 (37%)
Query: 41 WIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
+ + TGKK + G L++E G ++
Sbjct: 292 FSRSIDCQNLTGKKAVVFGDNTHAAAMTKILSREMGIHVV 331
>3aek_B Light-independent protochlorophyllide reductase S; iron/sulfur
cluster, oxidoreductase, bacteriochlorophyll
biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
PDB: 3aeq_B* 3aer_B 3aes_B* 3aeu_B 3aet_B
Length = 525
Score = 28.6 bits (64), Expect = 0.19
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
TGK+V I G G + AA KE G E++
Sbjct: 279 TGKRVFIFGDGTHVIAAARIAAKEVGFEVV 308
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 28.3 bits (64), Expect = 0.20
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 35 HAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
HAF K V I+G+G GL A Q G
Sbjct: 151 HAFHLAQGCE-------NKNVIIIGAGTIGLLAI-QCAVALG 184
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein,
oxidoreductase, redox- active center; HET: FAD; 1.90A
{Deinococcus radiodurans}
Length = 325
Score = 28.3 bits (64), Expect = 0.20
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 54 KVAIVGSGPSGLGAA 68
V I+G GP+GL AA
Sbjct: 10 DVVIIGGGPAGLTAA 24
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 28.4 bits (63), Expect = 0.20
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 42 IKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEA 75
+P I + +VG G GAA + + A
Sbjct: 14 AEPIIVEHSV--DLLMVGGGMGNCGAAFEAVRWA 45
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct
structural genomics, PSI, protein structure initiative;
HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Length = 335
Score = 28.3 bits (64), Expect = 0.20
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 54 KVAIVGSGPSGLGAA 68
V ++GSGP+G AA
Sbjct: 16 DVIVIGSGPAGYTAA 30
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 28.3 bits (64), Expect = 0.21
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 55 VAIVGSGPSGLGAAHQL 71
V IVG+GP+GL A +
Sbjct: 8 VLIVGAGPTGLFAGFYV 24
Score = 25.6 bits (57), Expect = 1.8
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEA 75
GK+V IVG G S + A L A
Sbjct: 152 GKRVLIVGGGDSAVDWALNLLDTA 175
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 28.0 bits (63), Expect = 0.22
Identities = 10/58 (17%), Positives = 17/58 (29%), Gaps = 13/58 (22%)
Query: 11 EGACVLGINEPAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAA 68
G + EP +I + A E + ++G+G GL
Sbjct: 145 LGFLI----EPI--------SITEKALEHAYASRSAFDW-DPSSAFVLGNGSLGLLTL 189
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 28.3 bits (64), Expect = 0.23
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 7/34 (20%)
Query: 35 HAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAA 68
H E IK G V ++G GP GL +
Sbjct: 157 HGAELANIKL-------GDTVCVIGIGPVGLMSV 183
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein,
redox-active center, oxidoreductase, D oxidoreductase;
HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5
c.3.1.5 PDB: 2whd_A*
Length = 333
Score = 28.3 bits (64), Expect = 0.24
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 54 KVAIVGSGPSGLGAA 68
++ IVGSGP+ AA
Sbjct: 10 RLCIVGSGPAAHTAA 24
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP,
oxidoreductase, phosphoprotein, redox-A center; HET:
FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Length = 338
Score = 27.9 bits (63), Expect = 0.24
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 54 KVAIVGSGPSGLGAA 68
KV I+GSGP+ AA
Sbjct: 24 KVTIIGSGPAAHTAA 38
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 27.9 bits (63), Expect = 0.24
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 55 VAIVGSGPSGLGAAHQL 71
+ I+G GP GL A
Sbjct: 10 ITIIGGGPVGLFTAFYG 26
Score = 25.6 bits (57), Expect = 1.6
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEA 75
G++VAI+G G S + A L A
Sbjct: 154 GRRVAILGGGDSAVDWALMLEPIA 177
>3r9u_A Thioredoxin reductase; structural genomics, center for structural
genomics of infec diseases, csgid,
thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A
{Campylobacter jejuni}
Length = 315
Score = 27.9 bits (63), Expect = 0.25
Identities = 9/15 (60%), Positives = 11/15 (73%)
Query: 54 KVAIVGSGPSGLGAA 68
VAI+G GP+GL A
Sbjct: 6 DVAIIGGGPAGLSAG 20
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 27.9 bits (63), Expect = 0.25
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 55 VAIVGSGPSGLGAAHQL 71
A++G+GP+GL A+ L
Sbjct: 9 CAVIGAGPAGLNASLVL 25
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 28.1 bits (62), Expect = 0.25
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAG 76
K+V ++GSG GL +A L G
Sbjct: 7 KRVVVLGSGVIGLSSALIL-ARKG 29
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 27.9 bits (63), Expect = 0.26
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 19/54 (35%)
Query: 22 AVTIKNIECAIIDHAFEQGWIKPEIPTLR-------TGKKVAI---VGSGPSGL 65
++T++N W + + PTL G VA+ VG G S L
Sbjct: 3 SITVRNATFT---------WARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSL 47
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 27.9 bits (63), Expect = 0.27
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 55 VAIVGSGPSGLGAAHQL 71
V I+G +GL AA QL
Sbjct: 5 VIIIGGSYAGLSAALQL 21
Score = 25.6 bits (57), Expect = 1.8
Identities = 4/22 (18%), Positives = 9/22 (40%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNK 73
K+ ++ + P + A L
Sbjct: 141 QGKIGVIAASPMAIHHALMLPD 162
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 27.9 bits (63), Expect = 0.27
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 55 VAIVGSGPSGLGAA 68
V +VG GPSGL AA
Sbjct: 4 VIVVGGGPSGLSAA 17
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 28.0 bits (63), Expect = 0.29
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 39 QGWIK-PEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
+ P + IVG G GL A+ L K G
Sbjct: 7 EHPEFLWANPEPKKSYDAIIVGGGGHGLATAYFLAKNHG 45
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD;
2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB:
1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Length = 320
Score = 27.8 bits (63), Expect = 0.29
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 54 KVAIVGSGPSGLGAA 68
K+ I+GSGP+G AA
Sbjct: 7 KLLILGSGPAGYTAA 21
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 27.6 bits (62), Expect = 0.32
Identities = 8/17 (47%), Positives = 12/17 (70%)
Query: 55 VAIVGSGPSGLGAAHQL 71
+ I+G GP+G+ AA Q
Sbjct: 17 LTIIGGGPTGIFAAFQC 33
Score = 26.5 bits (59), Expect = 0.82
Identities = 12/25 (48%), Positives = 13/25 (52%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEAG 76
GK+V IVG G S L L K A
Sbjct: 163 GKRVVIVGGGDSALDWTVGLIKNAA 187
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 27.7 bits (62), Expect = 0.36
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 12 GACVLGINEPAVTIKNIECAI---IDHAF-EQGWIKPEIPTLRTGKKVAIVGSGPSGLG 66
G CV A++I N+ + H + ++ +P ++ G V IV GP+G G
Sbjct: 73 GICVHKCPFNAISIVNLPEQLDEDCVHRYGVNAFVLYRLPIVKDGMVVGIV--GPNGTG 129
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 27.6 bits (62), Expect = 0.36
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 39 QGWIK-PEIPTLRTGKKVAIVGSGPSGLGAAHQLNKE 74
I ++ + ++G G G A+ L KE
Sbjct: 3 HHHHHMARIRAMKRHYEAVVIGGGIIGSAIAYYLAKE 39
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 27.8 bits (61), Expect = 0.37
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 45 EIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
+ R G++ +G GP L L+ G +
Sbjct: 116 ALGRFRRGERAVFIGGGPLPLTGIL-LSHVYGMRVN 150
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 27.8 bits (62), Expect = 0.37
Identities = 13/57 (22%), Positives = 23/57 (40%), Gaps = 8/57 (14%)
Query: 31 AIIDHAFEQ-------GWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
A I+ + E+ + +KV +VG+GP G+ L + G E+
Sbjct: 153 ADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLVVGTGPIGVLFT-LLFRTYGLEVW 208
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 27.7 bits (60), Expect = 0.38
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 39 QGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEA 75
W + ++G+G G A L + A
Sbjct: 23 SVWAHVGQHFTEEAFDIVVIGAGRMGAACAFYLRQLA 59
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER;
HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 27.7 bits (61), Expect = 0.40
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 54 KVAIVGSGPSGLGAAHQL 71
+V ++G+G GL A +
Sbjct: 2 RVVVIGAGVIGLSTALCI 19
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 27.1 bits (61), Expect = 0.43
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 19/58 (32%)
Query: 18 INEPAVTIKNIECAIIDHAFEQGWIKPEIPTLR-------TGKKVAI---VGSGPSGL 65
+ V ++N+ W + P L+ G+ +A+ G+G + L
Sbjct: 2 LTTTEVVMENVTAF---------WEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSL 50
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 27.3 bits (61), Expect = 0.44
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 51 TGKKVAIVGSGPSGLGAAHQL 71
T ++A+VG SGL AA L
Sbjct: 4 TTDRIAVVGGSISGLTAALML 24
>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant,
oxidoreductase; 2.90A {Thermotoga maritima} SCOP:
c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A
Length = 415
Score = 27.4 bits (62), Expect = 0.46
Identities = 12/45 (26%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 32 IIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
A + I P+ VA+ G G G AA +++E G
Sbjct: 195 CAGLAMDVLGIDPK------KATVAVQGFGNVGQFAALLISQELG 233
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 27.3 bits (61), Expect = 0.46
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 49 LRTGKKVAIVGSGPSGLGAAHQLNKEAG 76
+R G V I+G GP GL A + K AG
Sbjct: 211 IRPGDNVVILGGGPIGLAAV-AILKHAG 237
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 27.2 bits (61), Expect = 0.50
Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 22/71 (30%)
Query: 11 EGACVLGINEP-AVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAH 69
EGA + EP +V + HA + ++ G V ++G+GP GL +
Sbjct: 147 EGALL----EPLSVGV---------HACRRAGVQL-------GTTVLVIGAGPIGLVSV- 185
Query: 70 QLNKEAGTELI 80
K G ++
Sbjct: 186 LAAKAYGAFVV 196
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 27.4 bits (60), Expect = 0.51
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 51 TGKKVAIVGSGPSGLGAAHQL 71
T K +VG+GP GL AA +L
Sbjct: 91 TNTKCLVVGAGPCGLRAAVEL 111
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 27.1 bits (61), Expect = 0.54
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 53 KKVAIVGSGPSGLGAA 68
+ V I+G+G +G+ A
Sbjct: 28 QDVVIIGAGAAGMMCA 43
>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot,
C-terminal alpha-helical domain oxidoreductase; 2.00A
{Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6
Length = 338
Score = 27.3 bits (61), Expect = 0.54
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 52 GKKVAIVGSGPSGLGAAHQLN-KEAGTELI 80
GKKVAI+G G G AH N K++G ++
Sbjct: 16 GKKVAIIGYG--SQGHAHACNLKDSGVDVT 43
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 27.1 bits (61), Expect = 0.56
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 55 VAIVGSGPSGLGAA 68
V IVG+G +G AA
Sbjct: 19 VVIVGAGAAGFSAA 32
Score = 24.4 bits (54), Expect = 5.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNK 73
GK+V +G G SG AA +++
Sbjct: 155 GKRVVTIGGGNSGAIAAISMSE 176
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 27.1 bits (59), Expect = 0.58
Identities = 6/25 (24%), Positives = 8/25 (32%)
Query: 54 KVAIVGSGPSGLGAAHQLNKEAGTE 78
KV + G G + G E
Sbjct: 4 KVCVCGGGNGAHTLSGLAASRDGVE 28
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 26.9 bits (60), Expect = 0.62
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 55 VAIVGSGPSGLGAA 68
V IVGSGP+G AA
Sbjct: 215 VLIVGSGPAGAAAA 228
Score = 24.2 bits (53), Expect = 6.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNK 73
GK+VA++G G SG+ AA L
Sbjct: 355 GKRVAVIGGGNSGVEAAIDLAG 376
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 26.9 bits (60), Expect = 0.65
Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 35 HAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAH 69
H +KP G V I G+GP G AA
Sbjct: 176 HGCVSAGVKP-------GSHVYIAGAGPVGRCAAA 203
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 26.8 bits (60), Expect = 0.65
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 55 VAIVGSGPSGLGAAHQL 71
V I G G G A+ L
Sbjct: 9 VLINGCGIGGAMLAYLL 25
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta
fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium
loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A*
3alm_A* 3all_A*
Length = 379
Score = 26.9 bits (60), Expect = 0.66
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 48 TLRTGKKVAIVGSGPSGLGAAHQL 71
T ++ + G G +GL AA L
Sbjct: 7 TPGKTRRAEVAGGGFAGLTAAIAL 30
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 26.7 bits (60), Expect = 0.68
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 50 RTGKKVAIVGSGPSGLGAAHQL-NKEAGTELI 80
+ +KV +VG G G A+ + + E+
Sbjct: 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIG 38
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 26.9 bits (60), Expect = 0.69
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
V + G G +G+ A+ + AG
Sbjct: 44 VVVAGYGIAGVAASIEA-ARAG 64
>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase;
L-2-hydroxycarboxylate dehydrogenase, L-lactate
dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET:
NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1
Length = 309
Score = 26.7 bits (60), Expect = 0.74
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 1/30 (3%)
Query: 52 GKKVAIVGSGPSGLGAAHQL-NKEAGTELI 80
+K+ I+G G G AH L + + +
Sbjct: 1 ARKIGIIGLGNVGAAVAHGLIAQGVADDYV 30
>4dim_A Phosphoribosylglycinamide synthetase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
ligase; 2.61A {Anaerococcus prevotii}
Length = 403
Score = 26.9 bits (60), Expect = 0.75
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
K++ I+G+G LG KE G I
Sbjct: 7 NKRLLILGAGRGQLGLYKAA-KELGIHTI 34
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD;
1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 26.7 bits (60), Expect = 0.78
Identities = 10/14 (71%), Positives = 11/14 (78%)
Query: 55 VAIVGSGPSGLGAA 68
V IVGSGP+G AA
Sbjct: 4 VLIVGSGPAGAAAA 17
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 26.5 bits (59), Expect = 0.87
Identities = 11/35 (31%), Positives = 14/35 (40%), Gaps = 7/35 (20%)
Query: 35 HAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAH 69
H + P G V + G+GP GL AA
Sbjct: 176 HGAVTAGVGP-------GSTVYVAGAGPVGLAAAA 203
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 26.4 bits (59), Expect = 0.87
Identities = 8/19 (42%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 48 TLRTGKKVAIVGSGPSGLG 66
++ +G A+V GPSG G
Sbjct: 366 SIPSGSVTALV--GPSGSG 382
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 26.5 bits (59), Expect = 0.90
Identities = 5/21 (23%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 46 IPTLRTGKKVAIVGSGPSGLG 66
+PT + + ++ G +G+G
Sbjct: 19 LPTPKNNTILGVL--GKNGVG 37
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics,
joint center for structural genomics, JCSG; HET: MSE;
1.37A {Magnetospirillum magnetotacticum ms-1}
Length = 200
Score = 26.5 bits (58), Expect = 0.92
Identities = 5/14 (35%), Positives = 10/14 (71%)
Query: 31 AIIDHAFEQGWIKP 44
A++D A +G++ P
Sbjct: 187 ALVDEAVRRGYLAP 200
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 26.4 bits (59), Expect = 0.98
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 21/59 (35%)
Query: 11 EGACVLGINEP-AVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAA 68
EGA + EP +V I HA +G + G KV + G+GP G+
Sbjct: 150 EGALI----EPLSVGI---------HACRRGGVTL-------GHKVLVCGAGPIGMVTL 188
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc;
ABC-transporter, ABCB6, nucleotide binding domain, heme
BIOS transport protein; 2.00A {Homo sapiens} PDB:
3nh9_A* 3nha_A* 3nhb_A*
Length = 306
Score = 26.4 bits (59), Expect = 1.0
Identities = 9/19 (47%), Positives = 13/19 (68%), Gaps = 2/19 (10%)
Query: 48 TLRTGKKVAIVGSGPSGLG 66
T+ G+ +A+V GPSG G
Sbjct: 76 TVMPGQTLALV--GPSGAG 92
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 26.4 bits (59), Expect = 1.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 49 LRTGKKVAIVGSGPSGLGAA 68
+GK V I G+GP GL AA
Sbjct: 162 GVSGKSVLITGAGPIGLMAA 181
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 26.3 bits (59), Expect = 1.0
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 50 RTGKKVAIVGSGPSGLGAAHQL-NKEAGTELI 80
+ KVA++G+G G A L N+ EL+
Sbjct: 3 KHVNKVALIGAGFVGSSYAFALINQGITDELV 34
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 26.3 bits (59), Expect = 1.1
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 48 TLRTGKKVAIVGSGPSGLGAAHQL-NKEAGTELI 80
++ +KV +VG G G A + + E +
Sbjct: 1 SMPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFV 34
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 26.3 bits (59), Expect = 1.1
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 50 RTGKKVAIVGSGPSGLGAAHQL-NKEAGTELI 80
G +V ++G+G G L N+ E++
Sbjct: 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIV 35
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain);
FAD-binding protein, GR-fold, oxidoreductase; HET: FAD;
2.10A {Clostridium acetobutylicum}
Length = 385
Score = 26.0 bits (58), Expect = 1.1
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 49 LRTGKKVAIVGSGPSGLGAAHQLNK 73
+ K I+G G G+ A +
Sbjct: 143 CKNKGKAFIIGGGILGIELAQAIID 167
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN
PG4; 2.24A {Gluconacetobacter hansenii}
Length = 199
Score = 26.2 bits (58), Expect = 1.2
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 51 TGKKVAIVGSGPSGLGAAH 69
GK VA+V + P +G A
Sbjct: 108 AGKPVALVTASPGMIGGAR 126
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 26.1 bits (58), Expect = 1.3
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 51 TGKKVAIVGSGPSGLGAA 68
+ I G+G GL A
Sbjct: 3 EPIDILIAGAGIGGLSCA 20
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 1.3
Identities = 7/23 (30%), Positives = 10/23 (43%), Gaps = 9/23 (39%)
Query: 8 APCEGACVLGINEPAVTIK-NIE 29
A + A PA+ IK +E
Sbjct: 33 AD-DSA-------PALAIKATME 47
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 25.9 bits (58), Expect = 1.3
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 52 GKKVAIVGSGPSGLGAAHQL-NKEAGTELI 80
G KV ++G+G G A L N+ EL+
Sbjct: 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELV 35
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 26.0 bits (58), Expect = 1.4
Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 15/59 (25%)
Query: 18 INEPAVTIKNIECAIIDHAFEQ---GWIKPEIPTLR-------TGKKVAIVGSGPSGLG 66
+E I + F + E+P LR GK VA+V G SG G
Sbjct: 328 KDEGKRVIDRATGDL---EFRNVTFTYPGREVPALRNINLKIPAGKTVALV--GRSGSG 381
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 25.9 bits (57), Expect = 1.4
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 55 VAIVGSGPSGLGAAHQLNKEA 75
+ I+G G SG GAA++ A
Sbjct: 25 ILIIGGGFSGCGAAYEAAYWA 45
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB:
1e5l_A* 1e5q_A
Length = 450
Score = 26.0 bits (56), Expect = 1.4
Identities = 7/30 (23%), Positives = 13/30 (43%), Gaps = 1/30 (3%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
K V ++GSG L ++G ++
Sbjct: 2 ATKSVLMLGSGFVTRPTLDVL-TDSGIKVT 30
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 25.6 bits (57), Expect = 1.5
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Query: 50 RTGKKVAIVGSGPSGLGAAHQL-NKEAGTELI 80
+T K+ +VG G G+ + K L+
Sbjct: 12 KTVNKITVVGGGELGIACTLAISAKGIADRLV 43
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A
{Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB:
1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A*
3p4s_A*
Length = 602
Score = 25.7 bits (57), Expect = 1.7
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAGTEL 79
+AIVG+G +GL AA +A
Sbjct: 8 LAIVGAGGAGLRAAIAA-AQANPNA 31
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 25.6 bits (57), Expect = 1.7
Identities = 6/19 (31%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 48 TLRTGKKVAIVGSGPSGLG 66
+ +G A+V G +G G
Sbjct: 42 FIPSGTTCALV--GHTGSG 58
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 25.7 bits (56), Expect = 1.7
Identities = 9/22 (40%), Positives = 11/22 (50%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKE 74
KV I+G+G G A L E
Sbjct: 17 MKVLILGAGNIGRAIAWDLKDE 38
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 25.9 bits (57), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 55 VAIVGSGPSGLGAAHQLNK 73
V +VG GP GL A Q+ +
Sbjct: 7 VVVVGGGPVGLATAWQVAE 25
>3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty
acid biosynthesis II, short-chain dehydrogenase
reductase superfamily; HET: NAI; 1.80A {Yersinia
pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A*
Length = 405
Score = 25.8 bits (56), Expect = 1.8
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 41 WIKPEIPTLRTGKKVAIVGSGPSGLGAA 68
++ E P K+V ++G+ +G G A
Sbjct: 36 YVTTEGPIANGPKRVLVIGAS-TGYGLA 62
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 25.6 bits (57), Expect = 1.8
Identities = 9/19 (47%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 48 TLRTGKKVAIVGSGPSGLG 66
++ GK VA+V G SG G
Sbjct: 365 SIPQGKTVALV--GRSGSG 381
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann
fold domains, reductase, nitrogen fixing,
oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter
vinelandii} PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A*
1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A*
3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Length = 492
Score = 25.6 bits (56), Expect = 1.9
Identities = 7/46 (15%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 38 EQGWIKPEIPTLR---TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
+ + + R GK+V + G ++ G E++
Sbjct: 331 YKPEWEAVVAKYRPRLEGKRVMLYIGGLRPRHVIGAY-EDLGMEVV 375
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 25.7 bits (57), Expect = 1.9
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 49 LRTGKKVAIVGSGPSGLGAA 68
+R G V I G+GP GL
Sbjct: 177 VRLGDPVLICGAGPIGLITM 196
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 25.6 bits (57), Expect = 1.9
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 53 KKVAIVGSGPSGLGAAHQL-NKEAGTELI 80
K+A++G+G G A + E++
Sbjct: 8 TKLAVIGAGAVGSTLAFAAAQRGIAREIV 36
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 25.7 bits (57), Expect = 2.0
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 54 KVAIVGSGPSGLGAAHQLNK 73
K ++G+G GL AA L +
Sbjct: 25 KAIVIGAGIGGLSAAVALKQ 44
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 25.4 bits (56), Expect = 2.0
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 55 VAIVGSGPSGLGAAHQLNK 73
+ I+GSG G A + +
Sbjct: 5 LIIIGSGSVGAAAGYYATR 23
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 25.5 bits (57), Expect = 2.1
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 54 KVAIVGSGPSGLGAA 68
+ I+G+G +GL A
Sbjct: 6 ENIIIGAGAAGLFCA 20
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 25.3 bits (56), Expect = 2.2
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 55 VAIVGSGPSGLGAAHQLNK 73
V +VG+G G+ A +QL K
Sbjct: 6 VIVVGAGSMGMAAGYQLAK 24
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS,
transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Length = 629
Score = 25.5 bits (57), Expect = 2.2
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 5/35 (14%)
Query: 43 KPEIPTLRTGKKVAIVGSGP---SGLGAAHQLNKE 74
+ E L+ G V I+ G L AA L
Sbjct: 498 EWER--LKGGDDVVILAGGKALDYALKAAEDLPGV 530
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 25.4 bits (56), Expect = 2.2
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 9/30 (30%)
Query: 44 PEIPTLR-------TGKKVAIVGSGPSGLG 66
E+ L+ +G+ VA+V G SG G
Sbjct: 401 KEVQILKGLNLKVKSGQTVALV--GNSGCG 428
Score = 25.4 bits (56), Expect = 2.4
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 9/30 (30%)
Query: 44 PEIPTLR-------TGKKVAIVGSGPSGLG 66
P IP L+ G+ +A+V G SG G
Sbjct: 1044 PSIPVLQGLSLEVKKGQTLALV--GSSGCG 1071
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 25.1 bits (56), Expect = 2.2
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 50 RTGKKVAIVGSGPSGLGAAHQL-NKEAGTELI 80
++ KVAI+G+G G AA + ++ EL+
Sbjct: 5 KSRSKVAIIGAGFVGASAAFTMALRQTANELV 36
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 25.2 bits (56), Expect = 2.3
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 51 TGKKVAIVGSGPSGLGAA 68
+GK V I G+GP GL
Sbjct: 167 SGKSVLITGAGPLGLLGI 184
>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG,
PSI-2, GFO/IDH/MO family, protein structure initiative;
HET: MSE EPE; 1.80A {Porphyromonas gingivalis}
Length = 304
Score = 25.2 bits (55), Expect = 2.4
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 54 KVAIVGSGPSGLGAAHQLNKEAGTELI 80
+ AIVG G G A L + E+
Sbjct: 11 RAAIVGYGNIGRYALQALREAPDFEIA 37
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 25.2 bits (55), Expect = 2.4
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 4/47 (8%)
Query: 38 EQGWIKPEIPTLR---TGKKVAIVGSGPSGLGAAHQLNKEAGTELIK 81
E+ ++ + R GK+V + G L + G +++
Sbjct: 315 EEAKVRAALEPWRARLEGKRVLLYTGGVKSWSVVSALQ-DLGMKVVA 360
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation,
tetramer role, mutant enzymes, oxidoreductase; HET: FMN;
2.20A {Escherichia coli}
Length = 193
Score = 25.0 bits (55), Expect = 2.5
Identities = 7/19 (36%), Positives = 8/19 (42%)
Query: 51 TGKKVAIVGSGPSGLGAAH 69
GK V I S +G A
Sbjct: 107 AGKPVLIQTSSMGVIGGAR 125
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 25.2 bits (56), Expect = 2.6
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 49 LRTGKKVAIVGSGPSGLGAAHQLNK 73
+ + I+G G GL A L +
Sbjct: 140 IENSGEAIIIGGGFIGLELAGNLAE 164
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 25.2 bits (56), Expect = 2.6
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 55 VAIVGSGPSGLGAAHQL 71
+ I+GSG +GL A L
Sbjct: 2 IYIIGSGIAGLSAGVAL 18
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 24.9 bits (55), Expect = 2.7
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
Query: 50 RTGKKVAIVGSGPSGLGAAHQL-NKEAGTELI 80
R+ K+ +VG G+ A + K+ E+
Sbjct: 19 RSYNKITVVGCDAVGMADAISVLMKDLADEVA 50
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 25.3 bits (56), Expect = 2.7
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 46 IPTLRTGKKVAIVGSGPSGLG 66
+P ++ G V IV GP+G G
Sbjct: 41 LPVVKEGMVVGIV--GPNGTG 59
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid,
transferase; HET: TDP; 2.40A {Escherichia coli}
Length = 621
Score = 25.2 bits (56), Expect = 2.8
Identities = 10/33 (30%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 43 KPEIPTLRTGKKVAIVGSGP---SGLGAAHQLN 72
K + R G+K+AI+ G A LN
Sbjct: 496 KGIV--KRRGEKLAILNFGTLMPEAAKVAESLN 526
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 24.8 bits (54), Expect = 2.9
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 53 KKVAIVGSGPSGLGAAHQLNKEAGTELI 80
+ +VG+G G A L + +
Sbjct: 6 WNICVVGAGKIGQMIAALLKTSSNYSVT 33
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 24.8 bits (55), Expect = 3.0
Identities = 10/19 (52%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 48 TLRTGKKVAIVGSGPSGLG 66
TL GK A+V GP+G G
Sbjct: 41 TLYPGKVTALV--GPNGSG 57
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 25.1 bits (54), Expect = 3.1
Identities = 9/22 (40%), Positives = 13/22 (59%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
++GSG G AA +L +AG
Sbjct: 14 ALVIGSGYGGAVAALRL-TQAG 34
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 24.8 bits (55), Expect = 3.2
Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 52 GKKVAIVGSGPSGLG 66
GKKV IVG G G+G
Sbjct: 180 GKKVGIVGLG--GIG 192
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 25.0 bits (55), Expect = 3.2
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 38 EQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
+ W KP R V I+G+G G A L
Sbjct: 126 QALW-KPLPEYTREEFSVGIMGAGVLGAKVAESL 158
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 24.8 bits (54), Expect = 3.3
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 48 TLRTGKKVAIVGSGPSGLGAAHQL 71
+ + IVG+G G A L
Sbjct: 2 AVTKSSSLLIVGAGTWGTSTALHL 25
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter
jejuni} SCOP: c.73.1.3
Length = 251
Score = 24.8 bits (55), Expect = 3.4
Identities = 5/37 (13%), Positives = 11/37 (29%), Gaps = 1/37 (2%)
Query: 33 IDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAH 69
+ + + + L +V +V S G
Sbjct: 19 LSFERLKNLVA-FLAKLMEKYEVILVTSAAISAGHTK 54
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 24.8 bits (55), Expect = 3.8
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 54 KVAIVGSGPSGLGAAHQL-NKEAGTELI 80
KV ++G+G G A + ++ E++
Sbjct: 2 KVTVIGAGNVGATVAECVARQDVAKEVV 29
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 24.8 bits (55), Expect = 3.9
Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 52 GKKVAIVGSGPSGLG 66
G+ VA V G SG G
Sbjct: 367 GETVAFV--GMSGGG 379
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 24.5 bits (54), Expect = 4.0
Identities = 10/27 (37%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
Query: 50 RTGKKVAIVGSGPSGLGAAHQLNKEAG 76
GK V I G+GP GL + + G
Sbjct: 194 FAGKTVVIQGAGPLGLFGV-VIARSLG 219
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 24.8 bits (55), Expect = 4.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 55 VAIVGSGPSGLGAA 68
V ++G GPSGL AA
Sbjct: 29 VIVIGGGPSGLMAA 42
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD
with sulfur, putative REDU PSI; 1.28A {Pseudomonas
aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Length = 193
Score = 24.6 bits (54), Expect = 4.1
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 51 TGKKVAIVGSGPSGLGAAH 69
+GK AI+G+ G A
Sbjct: 107 SGKPAAILGASAGRFGTAR 125
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability;
HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 24.4 bits (54), Expect = 4.2
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 54 KVAIVGSGPSGLGAAHQL-NKEAGTELI 80
K+ IVG G G A L K E++
Sbjct: 2 KIGIVGLGRVGSSTAFALLMKGFAREMV 29
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and
permease protein; asymmetric dimer, tetramer,
P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus
lactis} SCOP: c.37.1.12
Length = 243
Score = 24.4 bits (54), Expect = 4.3
Identities = 6/19 (31%), Positives = 8/19 (42%), Gaps = 2/19 (10%)
Query: 48 TLRTGKKVAIVGSGPSGLG 66
+ +A GPSG G
Sbjct: 24 EAQPNSIIAFA--GPSGGG 40
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 24.5 bits (53), Expect = 4.4
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 52 GKKVAIVGSGPSGLGAAHQL 71
G VA++G G G+ A +
Sbjct: 155 GANVAVLGLGRVGMSVARKF 174
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 24.4 bits (54), Expect = 4.5
Identities = 6/28 (21%), Positives = 13/28 (46%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAHQLNK 73
++V ++G+G G A+ L+
Sbjct: 139 RQAAAGKRRVLLLGAGLIGCEFANDLSS 166
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 24.4 bits (54), Expect = 4.5
Identities = 10/42 (23%), Positives = 14/42 (33%), Gaps = 10/42 (23%)
Query: 21 PAVTIKNIECAII-DHAFEQGWIKPEIPTLRTGKKVAIVGSG 61
I I D F+ E+P + IVG+G
Sbjct: 164 HESQIPGASLGITSDGFFQL----EELP-----GRSVIVGAG 196
>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A
{Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A
1euz_A
Length = 419
Score = 24.4 bits (54), Expect = 4.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEAG 76
GK +AI G G +G A ++++ G
Sbjct: 212 GKTIAIQGYGNAGYYLAKIMSEDFG 236
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 24.5 bits (54), Expect = 4.7
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 55 VAIVGSGPSGLGAAHQL 71
V I+GSG +GL A +L
Sbjct: 11 VLIIGSGAAGLSLALRL 27
>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI; HET: PE8; 2.00A
{Archaeoglobus fulgidus}
Length = 293
Score = 24.5 bits (54), Expect = 4.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 46 IPTLRTGKKVAIVGSGPSGLGAAH 69
I KV ++G+G G G A
Sbjct: 6 IHHHHHHMKVFVIGAGLMGRGIAI 29
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 24.4 bits (54), Expect = 4.9
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 54 KVAIVGSGPSGLGAAHQL-NKEAGTELI 80
K+ ++G+G G A +L K+ EL+
Sbjct: 2 KITVIGAGNVGATTAFRLAEKQLARELV 29
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural
genomics of infec diseases, csgid; HET: NAD SKM; 1.45A
{Listeria monocytogenes} PDB: 3toz_A*
Length = 315
Score = 24.5 bits (54), Expect = 5.0
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
GKK+ I G+G + Q + E+
Sbjct: 153 IGKKMTICGAGGAATAICIQAALDGVKEIS 182
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 24.5 bits (54), Expect = 5.3
Identities = 8/15 (53%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 52 GKKVAIVGSGPSGLG 66
G KV + G G GLG
Sbjct: 177 GTKVGVAGFG--GLG 189
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex,
amino-acid biosynthesis, aromatic A biosynthesis, NAD,
oxidoreductase; HET: NAD; 1.00A {Corynebacterium
glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Length = 283
Score = 24.1 bits (53), Expect = 5.4
Identities = 8/29 (27%), Positives = 11/29 (37%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
V VG+G G A+ L +L
Sbjct: 127 LDSVVQVGAGGVGNAVAYALVTHGVQKLQ 155
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 24.1 bits (53), Expect = 5.4
Identities = 10/15 (66%), Positives = 11/15 (73%), Gaps = 2/15 (13%)
Query: 52 GKKVAIVGSGPSGLG 66
GKKV +VG G GLG
Sbjct: 195 GKKVGVVGIG--GLG 207
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 24.4 bits (54), Expect = 5.5
Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Query: 25 IKNIECAII-DHAFEQGWIKPEIPTLRTGKKVAIVGSG 61
IK + + + F+ ++P K + IVG G
Sbjct: 172 IKGSDLCLTSNEIFDL----EKLP-----KSIVIVGGG 200
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 24.4 bits (54), Expect = 5.6
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 54 KVAIVGSGPSGLGAAHQL-NKEAGTELI 80
KV IVGSG G A+ L E++
Sbjct: 2 KVGIVGSGMVGSATAYALALLGVAREVV 29
>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty
acid, structural genomi structural genomics/proteomics
initiative, RSGI; HET: ADN; 1.40A {Thermus
thermophilus} SCOP: c.2.1.2
Length = 242
Score = 24.1 bits (53), Expect = 5.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 54 KVAIVGSGPSGLGAA 68
+ A+V G SGLG A
Sbjct: 3 RSALVTGGASGLGRA 17
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor
complex, fragment-based LEAD genera inhibitors; HET:
52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A*
4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A*
4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A*
1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...
Length = 331
Score = 24.0 bits (53), Expect = 5.7
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 1/29 (3%)
Query: 53 KKVAIVGSGPSGLGAAHQL-NKEAGTELI 80
K+ +VG G G+ A + K+ EL
Sbjct: 20 NKITVVGVGAVGMACAISILMKDLADELA 48
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 24.1 bits (53), Expect = 5.9
Identities = 9/18 (50%), Positives = 10/18 (55%), Gaps = 1/18 (5%)
Query: 49 LRTGKKVAIVGSGPSGLG 66
L G VAI G+ GLG
Sbjct: 167 LMAGHWVAISGAA-GGLG 183
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase,
flavodoxin, oligomerization, flavoprotein,
oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} PDB:
1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Length = 174
Score = 24.1 bits (53), Expect = 6.1
Identities = 9/54 (16%), Positives = 17/54 (31%), Gaps = 17/54 (31%)
Query: 21 PAVTIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLG---AAHQL 71
+KN +D + + K VA++ G G A + +
Sbjct: 79 SGA-LKNA----LDFLSSEQF---------KYKPVALLAVAGGGDGGINALNNM 118
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for
structural genomics of infec diseases, csgid; HET: NAD;
1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A*
1vi2_A*
Length = 312
Score = 24.1 bits (53), Expect = 6.1
Identities = 7/30 (23%), Positives = 13/30 (43%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
GK + ++G+G + Q E E+
Sbjct: 147 RGKTMVLLGAGGAATAIGAQAAIEGIKEIK 176
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II,
membrane protein, heme protein, iron sulfur PROT
cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL;
1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A*
2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A*
3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A*
3aea_A* 3aeb_A* 3aec_A* ...
Length = 621
Score = 24.2 bits (53), Expect = 6.2
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
+VG+G +GL AA L EAG
Sbjct: 21 AVVVGAGGAGLRAAFGL-SEAG 41
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 24.0 bits (53), Expect = 6.3
Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 10/63 (15%)
Query: 17 GINEPAV-TIKNIECAIIDHAFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEA 75
G++ V + N++ A ++ I K IVG G GL A L
Sbjct: 132 GMDLAGVTPVTNLD-----EAEF---VQHAISA-GEVSKAVIVGGGFIGLEMAVSLADMW 182
Query: 76 GTE 78
G +
Sbjct: 183 GID 185
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A*
1qlb_A*
Length = 660
Score = 24.2 bits (53), Expect = 6.4
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
++G G +GL AA ++ G
Sbjct: 8 SLVIGGGLAGLRAAVAT-QQKG 28
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate
dehydrogenase activity, cell inner membrane, trica acid
cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB:
1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A*
2wu2_A* 2wu5_A*
Length = 588
Score = 24.1 bits (53), Expect = 6.4
Identities = 7/22 (31%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
++G+G +G+ AA Q+ ++G
Sbjct: 10 AVVIGAGGAGMRAALQI-SQSG 30
>3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas
mycobacterium avium, structural genomics; 2.00A
{Mycobacterium avium}
Length = 281
Score = 24.2 bits (53), Expect = 6.4
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 54 KVAIVGSGPSGLGAA 68
AIV G GLG A
Sbjct: 31 ASAIVSGGAGGLGEA 45
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 24.0 bits (53), Expect = 6.7
Identities = 7/19 (36%), Positives = 12/19 (63%), Gaps = 2/19 (10%)
Query: 48 TLRTGKKVAIVGSGPSGLG 66
+++ G+ + IV G SG G
Sbjct: 31 SIKQGEVIGIV--GRSGSG 47
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 24.1 bits (53), Expect = 6.7
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 55 VAIVGSGPSGLGAA 68
VAI+G+G +G+GA
Sbjct: 11 VAIIGTGTAGMGAY 24
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 24.0 bits (53), Expect = 6.8
Identities = 12/38 (31%), Positives = 14/38 (36%), Gaps = 10/38 (26%)
Query: 25 IKNIECAII-DHAFEQGWIKPEIPTLRTGKKVAIVGSG 61
I E D F E P KKV +VG+G
Sbjct: 166 IPGFELGTDSDGFFRL----EEQP-----KKVVVVGAG 194
>3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415;
rossmann fold, hot-DOG fold, hydratase 2 motif,
peroxisomes, oxidoreductase; 2.15A {Drosophila
melanogaster}
Length = 613
Score = 24.0 bits (52), Expect = 7.0
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 42 IKPEIPTLRTGKKVAIV-GSGPSGLGAAHQL 71
+ LR +VA+V G+G +GLG + L
Sbjct: 8 MSSSDGKLRYDGRVAVVTGAG-AGLGREYAL 37
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 23.8 bits (52), Expect = 7.1
Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 38 EQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQL 71
++ W L+ G+ + I+G+G G AH
Sbjct: 127 QRLWQSHPYQGLK-GRTLLILGTGSIGQHIAHTG 159
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 24.1 bits (53), Expect = 7.1
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 2/18 (11%)
Query: 49 LRTGKKVAIVGSGPSGLG 66
+ G+ VAI G G GLG
Sbjct: 162 AKPGEWVAIYGIG--GLG 177
>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein);
rossmann fold, NADPH, knotted protein, branched-chain
amino biosynthesis; 1.55A {Oryza sativa japonica group}
PDB: 3fr8_A* 1qmg_A* 1yve_I*
Length = 525
Score = 24.0 bits (52), Expect = 7.3
Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 2/24 (8%)
Query: 49 LRTGKKVAIVGSGPSGLGAAHQLN 72
+ K++ ++G G G A N
Sbjct: 51 FKGIKQIGVIGWGSQ--GPAQAQN 72
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile}
PDB: 2rab_A*
Length = 463
Score = 24.0 bits (53), Expect = 7.5
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Query: 25 IKNIECAII-DHAFEQGWIKPEIPTLRTGKKVAIVGSG 61
+ E I D F + P K+VAI+G+G
Sbjct: 147 LPGAELGITSDGFFAL----QQQP-----KRVAIIGAG 175
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 23.7 bits (52), Expect = 7.6
Identities = 6/15 (40%), Positives = 9/15 (60%), Gaps = 2/15 (13%)
Query: 52 GKKVAIVGSGPSGLG 66
G + I+G G G+G
Sbjct: 181 GLRGGILGLG--GVG 193
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping
sickness, flavoPro redox-active center; HET: FAD WPF;
1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A*
2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A*
1bzl_A* 1aog_A*
Length = 495
Score = 24.1 bits (53), Expect = 7.7
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Query: 25 IKNIECAII-DHAFEQGWIKPEIPTLRTGKKVAIVGSG 61
I IE I + AF PE P ++V VG G
Sbjct: 172 IPGIEHCISSNEAFYL----PEPP-----RRVLTVGGG 200
>1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann
fold, short-chain dehydrogenase, oxidoreductase; 1.22A
{Comamonas testosteroni} SCOP: c.2.1.2
Length = 253
Score = 23.6 bits (52), Expect = 7.8
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 54 KVAIVGSGPSGLGAAH 69
KVA+V G SG+G
Sbjct: 7 KVALVTGGASGVGLEV 22
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 23.7 bits (52), Expect = 8.0
Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 52 GKKVAIVGSGPSGLG 66
GK + IVG G GLG
Sbjct: 188 GKHIGIVGLG--GLG 200
>1zk4_A R-specific alcohol dehydrogenase; short chain
reductases/dehydrogenases, magnesium dependence,
oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis}
SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A*
1zk1_A* 1zk2_A 1zk3_A
Length = 251
Score = 23.6 bits (52), Expect = 8.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 54 KVAIVGSGPSGLGAAH 69
KVAI+ G G+G A
Sbjct: 7 KVAIITGGTLGIGLAI 22
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 23.7 bits (52), Expect = 8.0
Identities = 9/15 (60%), Positives = 12/15 (80%), Gaps = 2/15 (13%)
Query: 52 GKKVAIVGSGPSGLG 66
G+KVA+V GP+G G
Sbjct: 381 GQKVALV--GPTGSG 393
>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607;
structural genomics, PSI, protein structure initiative;
1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5
Length = 271
Score = 23.6 bits (52), Expect = 8.4
Identities = 6/29 (20%), Positives = 8/29 (27%)
Query: 52 GKKVAIVGSGPSGLGAAHQLNKEAGTELI 80
KV + GSG +L
Sbjct: 119 NAKVIVHGSGGMAKAVVAAFKNSGFEKLK 147
>1qgu_B Protein (nitrogenase molybdenum iron protein); biological nitrogen
fixation, nitrogen metabolism, molybdoenzymes, electron
transfer; HET: HCA CFM CLF; 1.60A {Klebsiella
pneumoniae} SCOP: c.92.2.3 PDB: 1h1l_B* 1qh1_B* 1qh8_B*
Length = 519
Score = 24.0 bits (52), Expect = 8.4
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTE 78
GKK + G +G L E G E
Sbjct: 359 HGKKFGLYGDPDFVMGLTRFL-LELGCE 385
>1mio_B Nitrogenase molybdenum iron protein (beta chain); HET: HCA CFM CLP;
3.00A {Clostridium pasteurianum} SCOP: c.92.2.3
Length = 458
Score = 23.8 bits (52), Expect = 8.5
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 51 TGKKVAIVGSGPSGLGAAHQLNKEAGTE 78
GKKVA++G + + + E G
Sbjct: 311 QGKKVALLGDPDEIIALSKFI-IELGAI 337
>1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR,
hydroxysteroid dehydrogenase, structural genomics, PSI;
HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP:
c.2.1.2 PDB: 1nfq_A* 1nfr_A*
Length = 260
Score = 23.6 bits (52), Expect = 8.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 54 KVAIVGSGPSGLGAAH 69
KVA+V G G+GA+H
Sbjct: 8 KVALVSGGARGMGASH 23
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 23.6 bits (52), Expect = 8.6
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
Query: 25 IKNIECAII-DHAFEQGWIKPEIPTLRTGKKVAIVGSG 61
I +E I D F P +P ++VA+VG+G
Sbjct: 148 IPGVEYGIDSDGFFAL----PALP-----ERVAVVGAG 176
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 23.6 bits (52), Expect = 8.6
Identities = 9/39 (23%), Positives = 15/39 (38%), Gaps = 10/39 (25%)
Query: 24 TIKNIECAII-DHAFEQGWIKPEIPTLRTGKKVAIVGSG 61
+ E I + AF+ P +P + + I G G
Sbjct: 150 ALPGHELCITSNEAFDL----PALP-----ESILIAGGG 179
>3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle
structural genomics center for infectious DI
oxidoreductase; 1.85A {Mycobacterium ulcerans}
Length = 257
Score = 23.7 bits (52), Expect = 9.5
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 54 KVAIVGSGPSGLGAA 68
VA+V G SGLG A
Sbjct: 10 AVAVVTGGASGLGLA 24
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 23.9 bits (51), Expect = 9.7
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 55 VAIVGSGPSGLGAAHQLNKEAG 76
++G+G +A +L EAG
Sbjct: 8 AVVIGTGYGAAVSALRL-GEAG 28
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA)
sandwich, structural genomics, J center for structural
genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans
c-125}
Length = 243
Score = 23.6 bits (50), Expect = 9.8
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 48 TLRTGKKVAIVGSGPSGLGAAH 69
+ G + + GSG S + A
Sbjct: 38 AVMNGGRFYVFGSGHSHMIAEE 59
>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH,
2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural
genomics, structural genomi consortium; HET: NAD GOL;
1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A*
1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*
Length = 265
Score = 23.4 bits (51), Expect = 9.8
Identities = 8/15 (53%), Positives = 10/15 (66%)
Query: 54 KVAIVGSGPSGLGAA 68
VA++ G SGLG A
Sbjct: 13 LVAVITGGASGLGLA 27
>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein;
structural genomics, oxidoreductase, amino-acid
biosynthesis; 2.10A {Clostridium acetobutylicum}
Length = 282
Score = 23.7 bits (52), Expect = 9.9
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 8/65 (12%)
Query: 22 AV-TIKNIECAIIDH-----AFEQGWIKPEIPTLRTGKKVAIVGSGPSGLGAAHQLNKEA 75
AV T+K I F + + ++ ++GSG + L
Sbjct: 88 AVNTLKFSREGISGFNTDYIGFGKM-LSKFRVEIK-NNICVVLGSGGAARAVLQYLKDNF 145
Query: 76 GTELI 80
++
Sbjct: 146 AKDIY 150
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium; 2.34A {Sinorhizobium meliloti}
Length = 257
Score = 23.3 bits (51), Expect = 9.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 54 KVAIVGSGPSGLGAA 68
+V IV SGLGAA
Sbjct: 8 RVFIVTGASSGLGAA 22
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.138 0.432
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,267,948
Number of extensions: 65937
Number of successful extensions: 776
Number of sequences better than 10.0: 1
Number of HSP's gapped: 770
Number of HSP's successfully gapped: 312
Length of query: 81
Length of database: 6,701,793
Length adjustment: 50
Effective length of query: 31
Effective length of database: 5,305,743
Effective search space: 164478033
Effective search space used: 164478033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.3 bits)