Query psy11002
Match_columns 195
No_of_seqs 142 out of 1852
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 15:41:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11002.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11002hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.9 1.2E-23 2.6E-28 154.3 8.3 134 42-185 11-157 (160)
2 KOG0027|consensus 99.9 9.6E-22 2.1E-26 145.3 7.6 130 46-184 3-149 (151)
3 KOG0034|consensus 99.8 2.7E-19 5.8E-24 135.4 9.3 137 45-185 27-176 (187)
4 KOG0028|consensus 99.8 3.3E-19 7.1E-24 128.7 7.3 138 39-185 21-171 (172)
5 KOG0031|consensus 99.8 7.5E-19 1.6E-23 126.0 7.5 134 46-184 27-165 (171)
6 PTZ00183 centrin; Provisional 99.8 2.2E-18 4.9E-23 127.4 8.7 132 45-185 11-155 (158)
7 PTZ00184 calmodulin; Provision 99.8 4.1E-18 8.9E-23 124.5 8.4 131 45-184 5-148 (149)
8 KOG0037|consensus 99.7 1.9E-16 4E-21 120.1 9.1 154 15-185 19-189 (221)
9 KOG0044|consensus 99.6 6.8E-16 1.5E-20 117.1 7.3 136 36-185 35-176 (193)
10 KOG0030|consensus 99.6 2.7E-15 5.7E-20 106.1 9.4 130 46-183 6-150 (152)
11 PF13499 EF-hand_7: EF-hand do 99.5 2.1E-13 4.6E-18 86.5 8.6 66 116-182 1-66 (66)
12 KOG0036|consensus 99.4 5.7E-13 1.2E-17 109.5 7.4 125 46-185 9-147 (463)
13 KOG0038|consensus 99.4 2.1E-12 4.5E-17 92.3 8.7 98 96-194 89-186 (189)
14 cd05022 S-100A13 S-100A13: S-1 99.4 2.4E-12 5.2E-17 86.4 8.0 72 115-190 8-81 (89)
15 cd05027 S-100B S-100B: S-100B 99.3 3.9E-11 8.4E-16 80.5 9.2 71 115-189 8-84 (88)
16 KOG4223|consensus 99.2 8.8E-12 1.9E-16 99.8 4.3 124 50-182 162-303 (325)
17 cd05026 S-100Z S-100Z: S-100Z 99.2 1.8E-10 3.9E-15 78.1 8.1 70 115-188 10-85 (93)
18 cd05029 S-100A6 S-100A6: S-100 99.2 3.5E-10 7.6E-15 75.8 8.8 70 115-188 10-83 (88)
19 PLN02964 phosphatidylserine de 99.1 6.1E-10 1.3E-14 98.4 11.3 108 45-185 137-244 (644)
20 cd05031 S-100A10_like S-100A10 99.1 5.6E-10 1.2E-14 75.8 8.6 72 114-189 7-84 (94)
21 cd00213 S-100 S-100: S-100 dom 99.1 6.5E-10 1.4E-14 74.5 8.3 74 113-190 6-85 (88)
22 cd05025 S-100A1 S-100A1: S-100 99.1 7.7E-10 1.7E-14 74.8 8.6 70 115-188 9-84 (92)
23 smart00027 EH Eps15 homology d 99.1 1E-09 2.2E-14 74.9 9.1 67 112-185 7-73 (96)
24 PF13833 EF-hand_8: EF-hand do 99.1 8.8E-10 1.9E-14 66.9 7.7 53 128-185 1-54 (54)
25 cd00052 EH Eps15 homology doma 99.1 8.4E-10 1.8E-14 69.7 7.4 62 118-186 2-63 (67)
26 cd05023 S-100A11 S-100A11: S-1 99.1 1.6E-09 3.4E-14 72.8 8.8 72 115-190 9-86 (89)
27 KOG0027|consensus 99.1 1.1E-09 2.3E-14 80.8 8.5 69 113-186 6-74 (151)
28 KOG0377|consensus 99.0 1.2E-09 2.6E-14 90.9 8.9 126 50-183 463-614 (631)
29 PTZ00183 centrin; Provisional 99.0 7.8E-09 1.7E-13 76.1 10.9 102 75-185 18-119 (158)
30 cd00051 EFh EF-hand, calcium b 98.9 6.4E-09 1.4E-13 63.7 7.8 61 117-182 2-62 (63)
31 COG5126 FRQ1 Ca2+-binding prot 98.9 2.7E-09 5.8E-14 78.7 6.9 102 74-185 20-121 (160)
32 KOG4223|consensus 98.9 9.3E-10 2E-14 88.3 4.3 130 48-185 74-229 (325)
33 PTZ00184 calmodulin; Provision 98.9 1.4E-08 3E-13 73.8 10.0 98 78-184 15-112 (149)
34 cd00252 SPARC_EC SPARC_EC; ext 98.9 7.5E-09 1.6E-13 72.8 7.4 61 114-183 47-107 (116)
35 PF13499 EF-hand_7: EF-hand do 98.9 2.1E-09 4.6E-14 67.9 3.7 63 52-141 1-66 (66)
36 cd05030 calgranulins Calgranul 98.9 1.6E-08 3.4E-13 67.8 7.7 70 115-188 8-83 (88)
37 KOG0044|consensus 98.8 2.9E-08 6.3E-13 75.6 9.3 108 46-185 21-129 (193)
38 PF14658 EF-hand_9: EF-hand do 98.8 3.8E-08 8.2E-13 61.6 7.5 63 119-185 2-65 (66)
39 KOG0028|consensus 98.8 9.1E-08 2E-12 69.7 9.5 104 75-187 34-137 (172)
40 KOG0031|consensus 98.6 2E-07 4.3E-12 67.5 7.9 73 112-185 29-130 (171)
41 PF00036 EF-hand_1: EF hand; 98.4 4.3E-07 9.4E-12 47.8 3.9 28 116-143 1-28 (29)
42 cd05024 S-100A10 S-100A10: A s 98.4 2.9E-06 6.3E-11 56.8 8.4 68 115-187 8-79 (91)
43 KOG0037|consensus 98.4 1.8E-06 3.9E-11 66.1 7.8 121 47-183 90-219 (221)
44 PLN02964 phosphatidylserine de 98.4 2E-06 4.2E-11 76.5 9.0 80 53-160 181-273 (644)
45 cd05022 S-100A13 S-100A13: S-1 98.4 1.5E-06 3.2E-11 58.3 6.4 68 49-143 6-75 (89)
46 KOG0036|consensus 98.3 1.8E-06 3.8E-11 71.8 7.6 77 112-193 11-88 (463)
47 cd05026 S-100Z S-100Z: S-100Z 98.3 2E-06 4.2E-11 58.2 6.0 68 49-143 8-81 (93)
48 smart00027 EH Eps15 homology d 98.3 2.3E-06 4.9E-11 58.2 6.3 77 45-151 4-84 (96)
49 cd05027 S-100B S-100B: S-100B 98.3 3.8E-06 8.3E-11 56.2 7.2 68 49-143 6-79 (88)
50 cd05025 S-100A1 S-100A1: S-100 98.3 2.5E-06 5.3E-11 57.6 6.4 68 49-143 7-80 (92)
51 KOG2643|consensus 98.3 1E-06 2.2E-11 73.6 5.2 123 49-183 231-383 (489)
52 KOG0030|consensus 98.3 3.4E-06 7.3E-11 60.2 6.8 70 111-185 7-78 (152)
53 PF13405 EF-hand_6: EF-hand do 98.3 1.8E-06 3.9E-11 46.1 4.2 28 116-143 1-29 (31)
54 KOG0041|consensus 98.3 4.6E-06 9.9E-11 63.1 7.7 67 114-185 98-164 (244)
55 cd00252 SPARC_EC SPARC_EC; ext 98.3 3.3E-06 7.1E-11 59.4 6.5 64 47-142 44-107 (116)
56 cd00051 EFh EF-hand, calcium b 98.3 6E-06 1.3E-10 50.1 6.9 61 53-141 2-62 (63)
57 cd00213 S-100 S-100: S-100 dom 98.2 3.1E-06 6.7E-11 56.5 5.7 69 48-143 5-79 (88)
58 KOG4666|consensus 98.2 4.4E-06 9.5E-11 67.5 6.5 112 64-185 240-360 (412)
59 cd05031 S-100A10_like S-100A10 98.2 5.3E-06 1.2E-10 56.1 5.9 67 50-143 7-79 (94)
60 PF00036 EF-hand_1: EF hand; 98.2 3.6E-06 7.9E-11 44.2 3.9 28 153-184 1-28 (29)
61 PF13833 EF-hand_8: EF-hand do 98.2 6.9E-06 1.5E-10 49.5 5.8 50 93-143 3-53 (54)
62 KOG4251|consensus 98.2 2E-06 4.4E-11 67.0 4.1 87 98-184 219-309 (362)
63 cd00052 EH Eps15 homology doma 98.2 7.5E-06 1.6E-10 51.3 6.2 61 53-143 1-61 (67)
64 KOG2643|consensus 98.1 1.4E-06 3E-11 72.9 2.7 125 50-188 317-457 (489)
65 PF12763 EF-hand_4: Cytoskelet 98.1 3E-05 6.6E-10 53.4 8.4 65 111-183 6-70 (104)
66 KOG2562|consensus 98.1 8.2E-06 1.8E-10 68.8 6.4 126 50-180 274-420 (493)
67 KOG0034|consensus 98.0 8.9E-06 1.9E-10 61.9 5.5 100 72-185 31-133 (187)
68 KOG4251|consensus 98.0 4.1E-06 8.8E-11 65.4 3.1 126 49-183 99-263 (362)
69 PF13202 EF-hand_5: EF hand; P 98.0 1.2E-05 2.6E-10 40.7 3.6 25 117-141 1-25 (25)
70 PRK12309 transaldolase/EF-hand 97.9 5.3E-05 1.1E-09 64.0 8.3 57 111-185 330-386 (391)
71 cd05029 S-100A6 S-100A6: S-100 97.9 6.9E-05 1.5E-09 50.1 7.1 68 49-143 8-79 (88)
72 PF14788 EF-hand_10: EF hand; 97.9 8.2E-05 1.8E-09 44.1 6.3 50 131-185 1-50 (51)
73 cd05023 S-100A11 S-100A11: S-1 97.9 7.7E-05 1.7E-09 50.0 7.1 68 49-143 7-80 (89)
74 PF10591 SPARC_Ca_bdg: Secrete 97.8 8.8E-06 1.9E-10 57.0 2.1 63 112-181 51-113 (113)
75 KOG0751|consensus 97.8 2.3E-05 4.9E-10 66.7 4.7 88 49-143 31-136 (694)
76 KOG4065|consensus 97.7 0.00022 4.9E-09 49.4 7.1 66 116-181 68-142 (144)
77 PF14658 EF-hand_9: EF-hand do 97.5 0.00053 1.1E-08 43.0 6.4 61 56-143 3-64 (66)
78 PF13202 EF-hand_5: EF hand; P 97.5 0.00022 4.8E-09 36.0 3.5 21 162-182 5-25 (25)
79 cd05030 calgranulins Calgranul 97.5 0.00054 1.2E-08 45.7 6.3 68 49-143 6-79 (88)
80 PRK12309 transaldolase/EF-hand 97.4 0.00036 7.8E-09 59.0 6.4 54 49-143 332-385 (391)
81 KOG0040|consensus 97.3 0.00088 1.9E-08 63.8 8.2 66 115-185 2253-2325(2399)
82 KOG0046|consensus 97.1 0.0017 3.7E-08 55.9 7.1 67 113-185 17-86 (627)
83 KOG0040|consensus 97.1 0.0023 4.9E-08 61.2 8.2 110 41-182 2243-2359(2399)
84 PF12763 EF-hand_4: Cytoskelet 97.1 0.0021 4.6E-08 44.3 6.2 68 44-142 3-70 (104)
85 PF09279 EF-hand_like: Phospho 97.0 0.0037 8.1E-08 41.0 6.7 69 116-185 1-70 (83)
86 KOG0377|consensus 97.0 0.0015 3.3E-08 55.2 5.7 67 50-143 546-615 (631)
87 PF13405 EF-hand_6: EF-hand do 97.0 0.0015 3.3E-08 34.5 3.7 24 161-184 5-28 (31)
88 KOG0041|consensus 96.8 0.011 2.5E-07 45.0 8.7 102 49-180 97-199 (244)
89 PF10591 SPARC_Ca_bdg: Secrete 96.8 0.00064 1.4E-08 47.6 1.9 62 48-139 51-112 (113)
90 smart00054 EFh EF-hand, calciu 96.8 0.0018 3.8E-08 32.4 3.1 27 117-143 2-28 (29)
91 cd05024 S-100A10 S-100A10: A s 96.8 0.01 2.3E-07 39.7 7.5 66 50-143 7-76 (91)
92 KOG0751|consensus 96.7 0.0042 9.2E-08 53.3 6.2 97 50-151 107-215 (694)
93 PF14788 EF-hand_10: EF hand; 96.5 0.015 3.3E-07 34.5 5.8 48 95-143 2-49 (51)
94 KOG2562|consensus 96.2 0.0057 1.2E-07 52.0 4.0 121 52-185 226-380 (493)
95 smart00054 EFh EF-hand, calciu 96.2 0.0092 2E-07 29.6 3.3 22 163-184 7-28 (29)
96 KOG4578|consensus 95.4 0.0087 1.9E-07 48.9 1.7 63 116-185 334-399 (421)
97 KOG0169|consensus 95.2 0.084 1.8E-06 47.7 7.4 132 45-185 130-275 (746)
98 KOG3555|consensus 95.1 0.027 5.9E-07 46.4 3.8 63 114-185 249-311 (434)
99 KOG4578|consensus 95.1 0.027 5.9E-07 46.1 3.6 67 73-143 332-398 (421)
100 PLN02952 phosphoinositide phos 94.9 0.3 6.4E-06 43.8 10.1 89 95-184 17-110 (599)
101 PF09069 EF-hand_3: EF-hand; 94.4 0.27 5.8E-06 32.9 6.6 71 114-187 2-78 (90)
102 KOG3866|consensus 94.0 0.1 2.2E-06 42.6 4.6 66 119-184 248-324 (442)
103 KOG1029|consensus 93.8 0.11 2.5E-06 47.1 5.1 67 110-183 190-256 (1118)
104 KOG1707|consensus 93.5 0.1 2.2E-06 46.1 4.1 129 44-183 188-376 (625)
105 KOG2243|consensus 92.9 0.19 4.2E-06 48.5 5.1 58 120-183 4062-4119(5019)
106 PF05517 p25-alpha: p25-alpha 92.1 1.7 3.8E-05 32.0 8.6 67 118-188 2-73 (154)
107 KOG0046|consensus 91.7 0.3 6.4E-06 42.7 4.5 30 44-74 12-41 (627)
108 KOG1955|consensus 91.5 0.49 1.1E-05 41.1 5.6 64 113-183 229-292 (737)
109 KOG4666|consensus 91.3 0.41 8.8E-06 39.4 4.7 67 114-184 258-324 (412)
110 KOG4347|consensus 90.6 0.61 1.3E-05 41.7 5.5 77 95-177 535-611 (671)
111 KOG0035|consensus 90.5 0.91 2E-05 42.3 6.8 71 114-185 746-817 (890)
112 KOG0042|consensus 90.3 0.58 1.3E-05 41.4 5.1 66 115-185 593-658 (680)
113 KOG0169|consensus 90.3 1 2.2E-05 41.1 6.7 70 111-185 132-201 (746)
114 PF09279 EF-hand_like: Phospho 88.1 1.9 4E-05 27.9 5.3 48 96-143 17-69 (83)
115 PF05042 Caleosin: Caleosin re 87.4 4 8.7E-05 30.6 7.2 65 116-185 8-125 (174)
116 KOG0038|consensus 87.3 1.3 2.7E-05 32.4 4.3 81 96-185 57-137 (189)
117 KOG3555|consensus 86.2 1.8 4E-05 36.0 5.2 98 51-159 211-324 (434)
118 PF08414 NADPH_Ox: Respiratory 84.3 8.4 0.00018 26.2 6.9 65 116-187 31-95 (100)
119 KOG4347|consensus 83.7 1.2 2.6E-05 39.9 3.4 60 49-137 553-612 (671)
120 KOG0998|consensus 83.5 1.3 2.7E-05 41.6 3.6 63 115-184 283-345 (847)
121 PF08726 EFhand_Ca_insen: Ca2+ 83.5 1.5 3.2E-05 27.8 2.9 30 112-142 3-32 (69)
122 KOG1955|consensus 82.5 1.8 4E-05 37.7 3.9 31 113-143 263-293 (737)
123 KOG4065|consensus 79.7 0.31 6.8E-06 34.0 -1.3 51 49-103 64-142 (144)
124 PF05042 Caleosin: Caleosin re 78.8 14 0.0003 27.8 7.0 66 49-142 94-165 (174)
125 KOG1265|consensus 78.3 9.3 0.0002 35.9 7.1 85 96-184 206-299 (1189)
126 KOG0039|consensus 76.6 7.6 0.00016 35.5 6.1 84 95-185 4-90 (646)
127 KOG4070|consensus 74.7 5 0.00011 29.4 3.6 92 50-160 11-106 (180)
128 KOG0035|consensus 73.7 1.3 2.9E-05 41.2 0.6 88 47-139 743-848 (890)
129 TIGR01848 PHA_reg_PhaR polyhyd 73.1 11 0.00025 25.9 4.9 55 122-180 10-73 (107)
130 PLN02230 phosphoinositide phos 72.1 24 0.00052 31.9 8.0 72 112-184 26-102 (598)
131 KOG1029|consensus 70.1 23 0.00051 32.9 7.4 59 119-184 17-77 (1118)
132 PF08976 DUF1880: Domain of un 69.0 4.6 9.9E-05 28.3 2.3 31 149-183 4-34 (118)
133 KOG1707|consensus 68.3 24 0.00052 31.7 7.0 40 115-154 195-234 (625)
134 PLN02223 phosphoinositide phos 68.2 26 0.00056 31.3 7.2 72 113-185 14-93 (537)
135 PF07879 PHB_acc_N: PHB/PHA ac 68.1 10 0.00023 23.5 3.5 22 122-143 10-31 (64)
136 PLN02228 Phosphoinositide phos 68.0 27 0.00059 31.4 7.4 69 111-185 20-93 (567)
137 PF12174 RST: RCD1-SRO-TAF4 (R 67.5 5.7 0.00012 25.2 2.4 47 131-185 8-54 (70)
138 PF01023 S_100: S-100/ICaBP ty 66.2 20 0.00044 20.3 4.3 36 154-189 5-41 (44)
139 PLN02222 phosphoinositide phos 64.1 29 0.00063 31.3 6.9 67 114-185 24-91 (581)
140 PF07308 DUF1456: Protein of u 60.9 39 0.00085 21.2 5.3 48 133-185 15-62 (68)
141 KOG2871|consensus 59.7 8.7 0.00019 32.4 2.6 64 114-181 308-371 (449)
142 cd07313 terB_like_2 tellurium 56.9 20 0.00044 23.9 3.8 53 128-184 12-65 (104)
143 KOG4004|consensus 56.7 4.1 8.9E-05 31.4 0.3 57 119-183 191-249 (259)
144 KOG0998|consensus 52.1 16 0.00036 34.4 3.5 126 48-185 8-191 (847)
145 KOG3449|consensus 51.9 55 0.0012 22.6 5.1 43 117-160 3-45 (112)
146 PTZ00373 60S Acidic ribosomal 47.6 70 0.0015 22.3 5.2 43 117-160 5-47 (112)
147 PLN02952 phosphoinositide phos 47.1 61 0.0013 29.4 6.1 52 128-184 13-65 (599)
148 PF12174 RST: RCD1-SRO-TAF4 (R 46.2 27 0.00059 22.1 2.8 58 95-160 9-66 (70)
149 KOG2301|consensus 45.1 16 0.00034 36.9 2.3 78 110-191 1412-1491(1592)
150 PF05517 p25-alpha: p25-alpha 43.7 1.3E+02 0.0028 22.0 6.5 48 96-143 20-69 (154)
151 KOG3442|consensus 43.7 58 0.0013 23.1 4.3 44 128-173 52-95 (132)
152 PF00404 Dockerin_1: Dockerin 42.6 24 0.00051 16.8 1.6 16 125-140 1-16 (21)
153 TIGR03573 WbuX N-acetyl sugar 42.6 53 0.0011 27.5 4.8 43 128-181 299-341 (343)
154 KOG1954|consensus 42.2 38 0.00082 29.0 3.8 56 117-180 446-501 (532)
155 PRK00819 RNA 2'-phosphotransfe 41.3 68 0.0015 24.3 4.8 35 125-160 27-61 (179)
156 cd05833 Ribosomal_P2 Ribosomal 41.2 1E+02 0.0022 21.4 5.2 56 118-183 4-59 (109)
157 KOG4004|consensus 40.3 13 0.00029 28.6 0.8 56 80-142 193-249 (259)
158 PF01885 PTS_2-RNA: RNA 2'-pho 39.2 62 0.0013 24.6 4.3 36 124-160 25-60 (186)
159 PF11829 DUF3349: Protein of u 39.1 93 0.002 21.0 4.6 64 96-160 21-84 (96)
160 KOG3866|consensus 38.1 38 0.00082 28.1 3.1 54 133-190 225-278 (442)
161 KOG0506|consensus 37.9 62 0.0013 28.5 4.5 66 120-187 91-161 (622)
162 PF11020 DUF2610: Domain of un 37.1 60 0.0013 21.1 3.3 52 129-184 26-77 (82)
163 COG4103 Uncharacterized protei 35.9 60 0.0013 23.7 3.5 59 119-185 34-95 (148)
164 cd07316 terB_like_DjlA N-termi 35.6 1.3E+02 0.0028 19.8 5.4 14 129-142 13-26 (106)
165 PF03672 UPF0154: Uncharacteri 34.9 94 0.002 19.3 3.8 31 129-160 29-59 (64)
166 TIGR00988 hip integration host 34.4 47 0.001 21.9 2.7 45 133-178 2-48 (94)
167 COG4359 Uncharacterized conser 33.7 1.7E+02 0.0037 22.6 5.8 80 85-185 8-88 (220)
168 TIGR02675 tape_meas_nterm tape 33.0 55 0.0012 20.8 2.7 17 127-143 26-42 (75)
169 PF10437 Lip_prot_lig_C: Bacte 32.6 77 0.0017 20.4 3.5 42 134-182 44-86 (86)
170 PLN00138 large subunit ribosom 31.2 1.8E+02 0.0038 20.3 5.2 41 119-160 5-45 (113)
171 PF12419 DUF3670: SNF2 Helicas 31.1 94 0.002 22.3 4.0 49 128-181 80-138 (141)
172 cd03035 ArsC_Yffb Arsenate Red 30.7 95 0.0021 21.0 3.8 48 131-186 35-85 (105)
173 cd02977 ArsC_family Arsenate R 30.3 86 0.0019 20.9 3.6 60 121-187 26-88 (105)
174 PRK00523 hypothetical protein; 29.4 1.2E+02 0.0026 19.3 3.7 31 129-160 37-67 (72)
175 COG3763 Uncharacterized protei 29.2 1.2E+02 0.0026 19.2 3.7 31 129-160 36-66 (71)
176 COG5562 Phage envelope protein 28.8 46 0.001 23.9 2.0 49 128-185 53-101 (137)
177 KOG2419|consensus 28.8 63 0.0014 29.6 3.2 72 116-188 438-537 (975)
178 TIGR00244 transcriptional regu 28.3 2.4E+02 0.0053 20.6 6.0 41 147-187 77-117 (147)
179 PF03979 Sigma70_r1_1: Sigma-7 27.6 79 0.0017 20.4 2.8 40 116-160 8-47 (82)
180 PRK14981 DNA-directed RNA poly 27.3 1.4E+02 0.0031 20.6 4.2 27 133-160 80-106 (112)
181 PF03732 Retrotrans_gag: Retro 26.1 1.7E+02 0.0038 18.4 4.4 36 96-132 28-63 (96)
182 KOG0042|consensus 26.0 1.2E+02 0.0027 27.4 4.4 59 80-143 599-657 (680)
183 PRK13344 spxA transcriptional 25.9 1.1E+02 0.0024 21.7 3.6 61 121-186 27-87 (132)
184 PF12872 OST-HTH: OST-HTH/LOTU 25.9 1.6E+02 0.0036 17.9 4.4 36 129-181 21-56 (74)
185 PF02864 STAT_bind: STAT prote 25.9 2.2E+02 0.0047 22.9 5.5 53 129-181 176-232 (254)
186 PF09373 PMBR: Pseudomurein-bi 25.8 79 0.0017 16.6 2.1 16 170-185 2-17 (33)
187 PLN02508 magnesium-protoporphy 25.5 1.2E+02 0.0026 25.4 4.0 66 113-183 39-106 (357)
188 PF02761 Cbl_N2: CBL proto-onc 25.4 2.1E+02 0.0045 18.9 6.5 48 129-181 20-67 (85)
189 PF08461 HTH_12: Ribonuclease 25.4 93 0.002 19.2 2.7 37 128-169 10-46 (66)
190 PF12588 PSDC: Phophatidylseri 25.2 2.7E+02 0.0059 20.2 5.5 52 135-194 6-63 (141)
191 PRK00199 ihfB integration host 25.1 82 0.0018 20.7 2.6 30 133-163 2-31 (94)
192 PRK01844 hypothetical protein; 24.9 1.6E+02 0.0035 18.7 3.7 31 129-160 36-66 (72)
193 PF09336 Vps4_C: Vps4 C termin 24.6 91 0.002 19.1 2.5 24 132-156 30-53 (62)
194 PF11116 DUF2624: Protein of u 24.5 2.2E+02 0.0047 18.8 6.1 29 131-160 14-42 (85)
195 TIGR01639 P_fal_TIGR01639 Plas 24.1 1.8E+02 0.0038 17.7 3.9 31 129-160 7-37 (61)
196 PF09068 EF-hand_2: EF hand; 24.1 2.7E+02 0.0058 19.7 8.6 70 114-183 40-124 (127)
197 smart00549 TAFH TAF homology. 24.1 2.1E+02 0.0046 19.1 4.3 38 145-185 15-52 (92)
198 PF13724 DNA_binding_2: DNA-bi 23.8 38 0.00082 19.9 0.7 10 1-10 1-10 (49)
199 cd03032 ArsC_Spx Arsenate Redu 23.3 1.9E+02 0.0042 19.7 4.4 62 121-187 27-88 (115)
200 PF08006 DUF1700: Protein of u 22.3 1.6E+02 0.0034 22.0 4.0 29 96-125 2-30 (181)
201 PF14513 DAG_kinase_N: Diacylg 22.3 3.1E+02 0.0067 19.8 6.4 33 128-160 45-77 (138)
202 PLN02228 Phosphoinositide phos 21.7 2.6E+02 0.0056 25.3 5.7 67 48-143 21-92 (567)
203 PHA02100 hypothetical protein 21.0 2.6E+02 0.0056 18.8 4.2 44 145-188 26-69 (112)
204 PF09312 SurA_N: SurA N-termin 20.8 2.9E+02 0.0063 18.9 4.9 15 173-187 99-113 (118)
205 PRK09430 djlA Dna-J like membr 20.6 2.7E+02 0.0059 22.4 5.2 53 127-184 67-120 (267)
206 PF04876 Tenui_NCP: Tenuivirus 20.5 3.6E+02 0.0078 19.9 5.7 54 127-183 95-159 (175)
207 PRK00285 ihfA integration host 20.4 95 0.0021 20.6 2.2 46 131-178 2-49 (99)
208 KOG1264|consensus 20.3 5.7E+02 0.012 24.7 7.5 175 6-182 96-291 (1267)
209 KOG4301|consensus 20.1 1.2E+02 0.0026 25.6 3.1 60 120-185 115-174 (434)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.90 E-value=1.2e-23 Score=154.28 Aligned_cols=134 Identities=31% Similarity=0.454 Sum_probs=120.3
Q ss_pred cccCCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCC-------------cccccccccchhcccccHHHHHHHHhhcc
Q psy11002 42 DLIIVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPS-------------IHNVDSTFIYYIILYQFVSEFIQGVSQFS 108 (195)
Q Consensus 42 ~~~l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~-------------~~~~d~~~~g~i~~~i~f~eF~~~~~~~~ 108 (195)
...++++++++++++|..+|++++|.|+..+|..+++. +..+|. +.+.+ +|.+|+.+|....
T Consensus 11 ~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~i----df~~Fl~~ms~~~ 85 (160)
T COG5126 11 FTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETV----DFPEFLTVMSVKL 85 (160)
T ss_pred cccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCcc----CHHHHHHHHHHHh
Confidence 34467778999999999999999999999998866532 466676 66776 9999999999998
Q ss_pred cCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 109 VKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 109 ~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.....+++++++|+.||.|++|+|+..+|+.+++. +|..+++++++++++. +|.+++|.|+|++|++.+...
T Consensus 86 ~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~-lge~~~deev~~ll~~----~d~d~dG~i~~~eF~~~~~~~ 157 (160)
T COG5126 86 KRGDKEEELREAFKLFDKDHDGYISIGELRRVLKS-LGERLSDEEVEKLLKE----YDEDGDGEIDYEEFKKLIKDS 157 (160)
T ss_pred ccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHh-hcccCCHHHHHHHHHh----cCCCCCceEeHHHHHHHHhcc
Confidence 88888999999999999999999999999999998 8999999999999998 999999999999999987754
No 2
>KOG0027|consensus
Probab=99.86 E-value=9.6e-22 Score=145.31 Aligned_cols=130 Identities=31% Similarity=0.452 Sum_probs=115.0
Q ss_pred CCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCC-------------cccccccccchhcccccHHHHHHHHhhcccCCc
Q psy11002 46 VVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPS-------------IHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGD 112 (195)
Q Consensus 46 ~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~-------------~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~ 112 (195)
+..+..+++++|..||.+++|.|+..+|..+++. +..+|.+++|.| +|++|+.++........
T Consensus 3 ~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I----~~~eF~~l~~~~~~~~~ 78 (151)
T KOG0027|consen 3 SEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTI----DFEEFLDLMEKLGEEKT 78 (151)
T ss_pred CHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeE----cHHHHHHHHHhhhcccc
Confidence 3457889999999999999999999988855443 578899999988 99999999987754433
Q ss_pred h----HHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 113 K----ESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 113 ~----~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
. .+.++.+|+.||.+++|+|+.+||+.++.. +|.+.+.++++.+++. .|.|+||.|+|++|++++..
T Consensus 79 ~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~-lg~~~~~~e~~~mi~~----~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 79 DEEASSEELKEAFRVFDKDGDGFISASELKKVLTS-LGEKLTDEECKEMIRE----VDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred cccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHH-hCCcCCHHHHHHHHHh----cCCCCCCeEeHHHHHHHHhc
Confidence 3 459999999999999999999999999999 8999999999999998 99999999999999999865
No 3
>KOG0034|consensus
Probab=99.80 E-value=2.7e-19 Score=135.40 Aligned_cols=137 Identities=41% Similarity=0.568 Sum_probs=121.4
Q ss_pred CCCCCHHHHHHHHhhcCcC-CCCCcCCCCCCCCCCC---------cccccccccch-hcccccHHHHHHHHhhcccCCch
Q psy11002 45 IVVRNEDEFIQGVSQFSVK-GDKDIDPLSKPAHFPS---------IHNVDSTFIYY-IILYQFVSEFIQGVSQFSVKGDK 113 (195)
Q Consensus 45 l~~~~~~~~~~~F~~~D~~-~~g~I~~~el~~~~~~---------~~~~d~~~~g~-i~~~i~f~eF~~~~~~~~~~~~~ 113 (195)
++..++..+...|..+|.+ ++|.++.+++..+... ++.++.+.+|. + +|++|+..++.+.+....
T Consensus 27 fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v----~F~~Fv~~ls~f~~~~~~ 102 (187)
T KOG0034|consen 27 FSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPV----DFEEFVRLLSVFSPKASK 102 (187)
T ss_pred cCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCcc----CHHHHHHHHhhhcCCccH
Confidence 4445677888899999999 9999999988855432 56777777766 6 999999999999888888
Q ss_pred HHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 114 ESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLK--DAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 114 ~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~--~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.++++.+|++||.+++|+|+.+|+.+++..+.+...+ ++.++.+++.++.++|.++||+|+++||..++.+.
T Consensus 103 ~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~~~ 176 (187)
T KOG0034|consen 103 REKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVEKQ 176 (187)
T ss_pred HHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHcC
Confidence 8899999999999999999999999999998887666 99999999999999999999999999999999987
No 4
>KOG0028|consensus
Probab=99.79 E-value=3.3e-19 Score=128.67 Aligned_cols=138 Identities=25% Similarity=0.334 Sum_probs=123.8
Q ss_pred cCCcccCCCCCHHHHHHHHhhcCcCCCCCcCCCCCC------CCC-------CCcccccccccchhcccccHHHHHHHHh
Q psy11002 39 SCHDLIIVVRNEDEFIQGVSQFSVKGDKDIDPLSKP------AHF-------PSIHNVDSTFIYYIILYQFVSEFIQGVS 105 (195)
Q Consensus 39 ~~~~~~l~~~~~~~~~~~F~~~D~~~~g~I~~~el~------~~~-------~~~~~~d~~~~g~i~~~i~f~eF~~~~~ 105 (195)
..|...++..+..+++..|..||++++|.|+..+|. ++- ..+..+|.++.|.| +|++|...+.
T Consensus 21 ~~~~~~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i----~fe~f~~~mt 96 (172)
T KOG0028|consen 21 ASPKSELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKI----TFEDFRRVMT 96 (172)
T ss_pred CCCCccccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCcee----chHHHHHHHH
Confidence 456666777888999999999999999999999984 222 24678888888888 9999999999
Q ss_pred hcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 106 QFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 106 ~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.+.....+.+.++.+|+.+|-|++|+|+..+|+.+... +|..++++++.+++++ +|.++||.|+-+||...+.+.
T Consensus 97 ~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvake-LgenltD~El~eMIeE----Ad~d~dgevneeEF~~imk~t 171 (172)
T KOG0028|consen 97 VKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKE-LGENLTDEELMEMIEE----ADRDGDGEVNEEEFIRIMKKT 171 (172)
T ss_pred HHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHH-hCccccHHHHHHHHHH----hcccccccccHHHHHHHHhcC
Confidence 88888889999999999999999999999999999999 8999999999999999 999999999999999988753
No 5
>KOG0031|consensus
Probab=99.77 E-value=7.5e-19 Score=125.99 Aligned_cols=134 Identities=18% Similarity=0.237 Sum_probs=115.1
Q ss_pred CCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccc--cccchhc---ccccHHHHHHHHhhcccCCchHHHHHHH
Q psy11002 46 VVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDS--TFIYYII---LYQFVSEFIQGVSQFSVKGDKESKLRFA 120 (195)
Q Consensus 46 ~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~--~~~g~i~---~~i~f~eF~~~~~~~~~~~~~~~~~~~~ 120 (195)
..-+++|++++|..+|+|+||.|+.++|+..+..+...-. ..+..+. |+|+|.-|+.++....+..++++.+..+
T Consensus 27 ~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~A 106 (171)
T KOG0031|consen 27 DQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNA 106 (171)
T ss_pred hHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 3447899999999999999999999999866655433211 1122222 7779999999999999999999999999
Q ss_pred hhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 121 FRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 121 F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
|+.||.+++|.|..+.|+++|.. .|.++++++++++++. +-++..|.++|.+|+.++..
T Consensus 107 F~~FD~~~~G~I~~d~lre~Ltt-~gDr~~~eEV~~m~r~----~p~d~~G~~dy~~~~~~ith 165 (171)
T KOG0031|consen 107 FKTFDDEGSGKIDEDYLRELLTT-MGDRFTDEEVDEMYRE----APIDKKGNFDYKAFTYIITH 165 (171)
T ss_pred HHhcCccCCCccCHHHHHHHHHH-hcccCCHHHHHHHHHh----CCcccCCceeHHHHHHHHHc
Confidence 99999999999999999999999 7999999999999998 88899999999999999873
No 6
>PTZ00183 centrin; Provisional
Probab=99.76 E-value=2.2e-18 Score=127.40 Aligned_cols=132 Identities=28% Similarity=0.409 Sum_probs=113.6
Q ss_pred CCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCC-------------CcccccccccchhcccccHHHHHHHHhhcccCC
Q psy11002 45 IVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFP-------------SIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKG 111 (195)
Q Consensus 45 l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~-------------~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~ 111 (195)
++..+.+++..+|..+|.+++|.|+..++..++. .+..+|.+++|.+ +|+||+..+.......
T Consensus 11 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i----~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 11 LTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKI----DFEEFLDIMTKKLGER 86 (158)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcE----eHHHHHHHHHHHhcCC
Confidence 4456788999999999999999999998863332 1457778888887 9999999887654445
Q ss_pred chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 112 DKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 112 ~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
...+.++.+|+.+|.+++|.|+.+||..++.. .|..++..+++.++.. +|.+++|.|++++|..++...
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~-~~~~l~~~~~~~~~~~----~d~~~~g~i~~~ef~~~~~~~ 155 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKE-LGETITDEELQEMIDE----ADRNGDGEISEEEFYRIMKKT 155 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHH----hCCCCCCcCcHHHHHHHHhcc
Confidence 56678999999999999999999999999998 7999999999999988 999999999999999999875
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.75 E-value=4.1e-18 Score=124.53 Aligned_cols=131 Identities=30% Similarity=0.469 Sum_probs=111.8
Q ss_pred CCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCC-------------CcccccccccchhcccccHHHHHHHHhhcccCC
Q psy11002 45 IVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFP-------------SIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKG 111 (195)
Q Consensus 45 l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~-------------~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~ 111 (195)
++.++.++++..|..+|.+++|.|+..++...+. .+..+|.+++|.+ +|++|+.++.......
T Consensus 5 ~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i----~~~ef~~~l~~~~~~~ 80 (149)
T PTZ00184 5 LTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTI----DFPEFLTLMARKMKDT 80 (149)
T ss_pred cCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcC----cHHHHHHHHHHhccCC
Confidence 4455678999999999999999999998874332 1456777888877 9999999988765445
Q ss_pred chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 112 DKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 112 ~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
...+.+..+|+.+|.+++|+|+.+||..++.. +|..++.++++.+++. +|.+++|.|+|+||+.++..
T Consensus 81 ~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~-~~~~~~~~~~~~~~~~----~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 81 DSEEEIKEAFKVFDRDGNGFISAAELRHVMTN-LGEKLTDEEVDEMIRE----ADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred cHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHH-HCCCCCHHHHHHHHHh----cCCCCCCcCcHHHHHHHHhc
Confidence 56678999999999999999999999999998 7988999999988887 99999999999999998753
No 8
>KOG0037|consensus
Probab=99.68 E-value=1.9e-16 Score=120.13 Aligned_cols=154 Identities=19% Similarity=0.146 Sum_probs=123.7
Q ss_pred ecCCcccchhhhhhhhhhhhhhcc---cCCcccCCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCC-------------
Q psy11002 15 STSSSKCISYIILYPITRLLFLNK---SCHDLIIVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFP------------- 78 (195)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~------------- 78 (195)
.+++..-+...|..+.....+..+ ..+...-.. +-.++...|...|.++.|.|+.+||.+.+.
T Consensus 19 g~p~~~~a~~~~~~~p~~~~~~~~~a~~~~~~~~~~-~~~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~Tcr 97 (221)
T KOG0037|consen 19 GAPYQAAAPGGPGAPPPQASYGSKEASASPSVRQPP-TFPQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCR 97 (221)
T ss_pred CCcccccCCCCCCCCCChhhhcCcCCCcCcccccCc-ccHHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHH
Confidence 344444455445554444222221 222333222 567999999999999999999999997765
Q ss_pred -CcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHH
Q psy11002 79 -SIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQI 157 (195)
Q Consensus 79 -~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l 157 (195)
++..+|.+..|.+ +|+||..+|... ..++.+|+.||.|++|.|+..||+.+|.. +|..++++-.+.+
T Consensus 98 lmI~mfd~~~~G~i----~f~EF~~Lw~~i-------~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~-~Gy~Lspq~~~~l 165 (221)
T KOG0037|consen 98 LMISMFDRDNSGTI----GFKEFKALWKYI-------NQWRNVFRTYDRDRSGTIDSSELRQALTQ-LGYRLSPQFYNLL 165 (221)
T ss_pred HHHHHhcCCCCCcc----CHHHHHHHHHHH-------HHHHHHHHhcccCCCCcccHHHHHHHHHH-cCcCCCHHHHHHH
Confidence 2689999999988 999999999887 79999999999999999999999999999 7999999999999
Q ss_pred HHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 158 VDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 158 ~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
+++ +|.-++|.|.+++|++++...
T Consensus 166 v~k----yd~~~~g~i~FD~FI~ccv~L 189 (221)
T KOG0037|consen 166 VRK----YDRFGGGRIDFDDFIQCCVVL 189 (221)
T ss_pred HHH----hccccCCceeHHHHHHHHHHH
Confidence 998 887779999999999998865
No 9
>KOG0044|consensus
Probab=99.63 E-value=6.8e-16 Score=117.07 Aligned_cols=136 Identities=29% Similarity=0.450 Sum_probs=108.2
Q ss_pred hcccCCcccCCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHH
Q psy11002 36 LNKSCHDLIIVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKES 115 (195)
Q Consensus 36 ~~~~~~~~~l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~ 115 (195)
...+||+|.+ +.++++.+|..+.++++-.. =....++.+|.+++|.| +|+||+..++... .....+
T Consensus 35 Fk~~cP~G~~---~~~~F~~i~~~~fp~gd~~~------y~~~vF~~fD~~~dg~i----~F~Efi~als~~~-rGt~ee 100 (193)
T KOG0044|consen 35 FKNECPSGRL---TLEEFREIYASFFPDGDASK------YAELVFRTFDKNKDGTI----DFLEFICALSLTS-RGTLEE 100 (193)
T ss_pred hcccCCCCcc---CHHHHHHHHHHHCCCCCHHH------HHHHHHHHhcccCCCCc----CHHHHHHHHHHHc-CCcHHH
Confidence 3458999985 78889999999888654210 01123688999999998 9999999999884 777788
Q ss_pred HHHHHhhHHcCCCCCeeeHHHHHHHHHHH---hCC---CCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 116 KLRFAFRIYDMDNDGFISNGELFQVLKMM---VGN---NLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 116 ~~~~~F~~~D~d~~G~Is~~el~~~l~~~---~g~---~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
+++++|++||.|++|+|+.+|+..+++.+ .|. +..++..++.+..+|+.+|.|+||.||++||.......
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~d 176 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKAD 176 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhhC
Confidence 99999999999999999999999988862 232 12244466677777778999999999999999998866
No 10
>KOG0030|consensus
Probab=99.63 E-value=2.7e-15 Score=106.10 Aligned_cols=130 Identities=20% Similarity=0.303 Sum_probs=104.3
Q ss_pred CCCCHHHHHHHHhhcCcCCCCCcCCCCCC------CCCCCc-------ccccccccchhcccccHHHHHHHHhhccc--C
Q psy11002 46 VVRNEDEFIQGVSQFSVKGDKDIDPLSKP------AHFPSI-------HNVDSTFIYYIILYQFVSEFIQGVSQFSV--K 110 (195)
Q Consensus 46 ~~~~~~~~~~~F~~~D~~~~g~I~~~el~------~~~~~~-------~~~d~~~~g~i~~~i~f~eF~~~~~~~~~--~ 110 (195)
++.+.++++++|..||..+||+|+..... +.+|+- ...+...-+. ..|+|++|+.+++.... .
T Consensus 6 ~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~--~rl~FE~fLpm~q~vaknk~ 83 (152)
T KOG0030|consen 6 TPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNV--KRLDFEEFLPMYQQVAKNKD 83 (152)
T ss_pred CcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhh--hhhhHHHHHHHHHHHHhccc
Confidence 34577999999999999999999987554 556652 2333331110 34599999999986643 3
Q ss_pred CchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 111 GDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 111 ~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
+.+-+.+....+.||++++|.|...||+.+|.+ +|.++++++++.++.. ..|.+|.|+|+.|++.+.
T Consensus 84 q~t~edfvegLrvFDkeg~G~i~~aeLRhvLtt-lGekl~eeEVe~Llag-----~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 84 QGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTT-LGEKLTEEEVEELLAG-----QEDSNGCINYEAFVKHIM 150 (152)
T ss_pred cCcHHHHHHHHHhhcccCCcceeHHHHHHHHHH-HHhhccHHHHHHHHcc-----ccccCCcCcHHHHHHHHh
Confidence 455688999999999999999999999999999 7999999999999985 558899999999998764
No 11
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.49 E-value=2.1e-13 Score=86.52 Aligned_cols=66 Identities=36% Similarity=0.677 Sum_probs=61.2
Q ss_pred HHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHH
Q psy11002 116 KLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVS 182 (195)
Q Consensus 116 ~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l 182 (195)
+++.+|+.+|.+++|+|+.+||+.++.. ++...+++.+.+.+..+++.+|.|+||.|+++||++++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKH-LGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH-TTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHH-hcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 4788999999999999999999999999 78888888999998888889999999999999999875
No 12
>KOG0036|consensus
Probab=99.41 E-value=5.7e-13 Score=109.49 Aligned_cols=125 Identities=21% Similarity=0.223 Sum_probs=109.7
Q ss_pred CCCCHHHHHHHHhhcCcCCCCCcCCCCCCCC---CC-----------CcccccccccchhcccccHHHHHHHHhhcccCC
Q psy11002 46 VVRNEDEFIQGVSQFSVKGDKDIDPLSKPAH---FP-----------SIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKG 111 (195)
Q Consensus 46 ~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~---~~-----------~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~ 111 (195)
.++...+++.+|+.||.+++|.|+..++... +. .+..+|.+.+|.+ +|+||..++...
T Consensus 9 ~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~v----Dy~eF~~Y~~~~---- 80 (463)
T KOG0036|consen 9 DEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRV----DYSEFKRYLDNK---- 80 (463)
T ss_pred cHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcc----cHHHHHHHHHHh----
Confidence 3456778999999999999999998766511 11 2689999999988 999999999876
Q ss_pred chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 112 DKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 112 ~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
+.++..+|+..|.++||.|..+|+.+.+.. +|.++++++++.+++. +|.++++.|+++||...+.-.
T Consensus 81 --E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~-~gi~l~de~~~k~~e~----~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 81 --ELELYRIFQSIDLEHDGKIDPNEIWRYLKD-LGIQLSDEKAAKFFEH----MDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred --HHHHHHHHhhhccccCCccCHHHHHHHHHH-hCCccCHHHHHHHHHH----hccCCCeeeccHHHHhhhhcC
Confidence 578999999999999999999999999999 8999999999999998 999999999999999987654
No 13
>KOG0038|consensus
Probab=99.40 E-value=2.1e-12 Score=92.28 Aligned_cols=98 Identities=34% Similarity=0.562 Sum_probs=85.5
Q ss_pred cHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeH
Q psy11002 96 FVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINF 175 (195)
Q Consensus 96 ~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~ 175 (195)
+|++|+.+++.++......-++.-+|+.||-|++++|..++|...+.++....++++++..++..+..+.|.++||++++
T Consensus 89 sfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~ 168 (189)
T KOG0038|consen 89 SFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSF 168 (189)
T ss_pred cHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccH
Confidence 79999999998865556666888899999999999999999999999976778999999999999999999999999999
Q ss_pred HHHHHHHHhhHHhhcCCCC
Q psy11002 176 EEFCSVSTASIITMFPTFN 194 (195)
Q Consensus 176 ~EF~~~l~~~~~~~~~~~~ 194 (195)
.||-.++.+. +.-..+|+
T Consensus 169 ~eFe~~i~ra-PDFlsTFH 186 (189)
T KOG0038|consen 169 AEFEHVILRA-PDFLSTFH 186 (189)
T ss_pred HHHHHHHHhC-cchHhhhe
Confidence 9999999887 43334443
No 14
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.38 E-value=2.4e-12 Score=86.38 Aligned_cols=72 Identities=21% Similarity=0.295 Sum_probs=63.7
Q ss_pred HHHHHHhhHHcC-CCCCeeeHHHHHHHHHHHhCCCCCH-HHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHhhc
Q psy11002 115 SKLRFAFRIYDM-DNDGFISNGELFQVLKMMVGNNLKD-AQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIITMF 190 (195)
Q Consensus 115 ~~~~~~F~~~D~-d~~G~Is~~el~~~l~~~~g~~~~~-~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~~~ 190 (195)
..++.+|+.||+ +++|+|+.+||+.++++.+|..+++ ++++++++. +|.|+||.|+|+||+.++.......+
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~----~D~d~DG~I~F~EF~~l~~~l~~~~~ 81 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKN----LDVNQDSKLSFEEFWELIGELAKAVK 81 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHH----hCCCCCCCCcHHHHHHHHHHHHHHHH
Confidence 578899999999 9999999999999999845777888 889889888 99999999999999999988755544
No 15
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.28 E-value=3.9e-11 Score=80.50 Aligned_cols=71 Identities=18% Similarity=0.343 Sum_probs=62.5
Q ss_pred HHHHHHhhHHc-CCCCC-eeeHHHHHHHHHH----HhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHh
Q psy11002 115 SKLRFAFRIYD-MDNDG-FISNGELFQVLKM----MVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIIT 188 (195)
Q Consensus 115 ~~~~~~F~~~D-~d~~G-~Is~~el~~~l~~----~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~ 188 (195)
..++.+|+.|| ++++| +|+.+||+.+++. ++|...++++++++++. +|.|++|.|+|+||+.++......
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~----~D~n~dG~v~f~eF~~li~~~~~~ 83 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET----LDSDGDGECDFQEFMAFVAMVTTA 83 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHH----hCCCCCCcCcHHHHHHHHHHHHHH
Confidence 57889999998 79999 6999999999997 45888899999999998 999999999999999998876443
Q ss_pred h
Q psy11002 189 M 189 (195)
Q Consensus 189 ~ 189 (195)
-
T Consensus 84 ~ 84 (88)
T cd05027 84 C 84 (88)
T ss_pred H
Confidence 3
No 16
>KOG4223|consensus
Probab=99.22 E-value=8.8e-12 Score=99.84 Aligned_cols=124 Identities=19% Similarity=0.225 Sum_probs=99.7
Q ss_pred HHHHHHHHhhcCcCCCCCcCCCCCCCCCC--------------CcccccccccchhcccccHHHHHHHHhhcccCCchHH
Q psy11002 50 EDEFIQGVSQFSVKGDKDIDPLSKPAHFP--------------SIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKES 115 (195)
Q Consensus 50 ~~~~~~~F~~~D~~~~g~I~~~el~~~~~--------------~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~ 115 (195)
...=++-|+.-|.|+||.++.+||..++- ++..+|+|++|.| +++||+.-+..........+
T Consensus 162 ~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I----~~eEfigd~~~~~~~~~epe 237 (325)
T KOG4223|consen 162 IARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKI----SLEEFIGDLYSHEGNEEEPE 237 (325)
T ss_pred HHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCce----eHHHHHhHHhhccCCCCCcc
Confidence 34445779999999999999999986663 4789999999998 99999998876643222211
Q ss_pred ----HHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHH
Q psy11002 116 ----KLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVS 182 (195)
Q Consensus 116 ----~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l 182 (195)
.-...+...|+|++|+++.+|++.++.- .+......++.-++.+ .|.|+||++|++|.+.-.
T Consensus 238 Wv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P-~~~d~A~~EA~hL~~e----aD~dkD~kLs~eEIl~~~ 303 (325)
T KOG4223|consen 238 WVLTEREQFFEFRDKNKDGKLDGDELLDWILP-SEQDHAKAEARHLLHE----ADEDKDGKLSKEEILEHY 303 (325)
T ss_pred cccccHHHHHHHhhcCCCCccCHHHHhcccCC-CCccHHHHHHHHHhhh----hccCccccccHHHHhhCc
Confidence 2235667789999999999999998876 5667788888888887 999999999999988643
No 17
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.17 E-value=1.8e-10 Score=78.11 Aligned_cols=70 Identities=23% Similarity=0.420 Sum_probs=58.4
Q ss_pred HHHHHHhhHHc-CCCCC-eeeHHHHHHHHHHHh----CCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHh
Q psy11002 115 SKLRFAFRIYD-MDNDG-FISNGELFQVLKMMV----GNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIIT 188 (195)
Q Consensus 115 ~~~~~~F~~~D-~d~~G-~Is~~el~~~l~~~~----g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~ 188 (195)
..++.+|..|| .|++| +|+.+||+.++.... +...++.+++++++. +|.|+||.|+|+||+.++......
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~e----lD~n~dG~Idf~EF~~l~~~l~~~ 85 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMND----LDSNKDNEVDFNEFVVLVAALTVA 85 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHH----hCCCCCCCCCHHHHHHHHHHHHHH
Confidence 46788999999 78998 599999999997632 234577788888888 999999999999999999877544
No 18
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.15 E-value=3.5e-10 Score=75.85 Aligned_cols=70 Identities=23% Similarity=0.472 Sum_probs=61.3
Q ss_pred HHHHHHhhHHcC-CC-CCeeeHHHHHHHHHHH--hCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHh
Q psy11002 115 SKLRFAFRIYDM-DN-DGFISNGELFQVLKMM--VGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIIT 188 (195)
Q Consensus 115 ~~~~~~F~~~D~-d~-~G~Is~~el~~~l~~~--~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~ 188 (195)
..+..+|..||. ++ +|+|+.+||++++++. .|.++++++++++++. +|.|++|+|+|+||+.++......
T Consensus 10 ~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~----~D~d~dG~Idf~EFv~lm~~l~~~ 83 (88)
T cd05029 10 GLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMED----LDRNKDQEVNFQEYVTFLGALALI 83 (88)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHH----hcCCCCCCCcHHHHHHHHHHHHHH
Confidence 467789999998 67 8999999999999741 5888999999999998 999999999999999999877544
No 19
>PLN02964 phosphatidylserine decarboxylase
Probab=99.12 E-value=6.1e-10 Score=98.39 Aligned_cols=108 Identities=19% Similarity=0.281 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHH
Q psy11002 45 IVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIY 124 (195)
Q Consensus 45 l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~ 124 (195)
++..+.++++++|..+|+|++|.+ +...+..+....+.......+..+|+.+
T Consensus 137 f~~kqi~elkeaF~lfD~dgdG~i----------------------------Lg~ilrslG~~~pte~e~~fi~~mf~~~ 188 (644)
T PLN02964 137 FVTQEPESACESFDLLDPSSSNKV----------------------------VGSIFVSCSIEDPVETERSFARRILAIV 188 (644)
T ss_pred ccHHHHHHHHHHHHHHCCCCCCcC----------------------------HHHHHHHhCCCCCCHHHHHHHHHHHHHh
Confidence 455678899999999999999963 2333333331111111122488999999
Q ss_pred cCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 125 DMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 125 D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
|.|++|.|+.+||..++.. ++...+++++.++++. +|.|++|.|+++||.+++...
T Consensus 189 D~DgdG~IdfdEFl~lL~~-lg~~~seEEL~eaFk~----fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 189 DYDEDGQLSFSEFSDLIKA-FGNLVAANKKEELFKA----ADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CCCCCCeEcHHHHHHHHHH-hccCCCHHHHHHHHHH----hCCCCCCcCCHHHHHHHHHhc
Confidence 9999999999999999998 6877888888888887 999999999999999998874
No 20
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.11 E-value=5.6e-10 Score=75.83 Aligned_cols=72 Identities=28% Similarity=0.440 Sum_probs=61.1
Q ss_pred HHHHHHHhhHHcC-CC-CCeeeHHHHHHHHHHH----hCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHH
Q psy11002 114 ESKLRFAFRIYDM-DN-DGFISNGELFQVLKMM----VGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASII 187 (195)
Q Consensus 114 ~~~~~~~F~~~D~-d~-~G~Is~~el~~~l~~~----~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~ 187 (195)
...+..+|..||. ++ +|+|+.+||+.++... +|..+++++++.+++. +|.+++|.|+|+||+.++.....
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~----~D~~~dg~I~f~eF~~l~~~~~~ 82 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKD----LDQNRDGKVNFEEFVSLVAGLSI 82 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHH----hCCCCCCcCcHHHHHHHHHHHHH
Confidence 3578899999997 87 7999999999999852 2567888999998888 99999999999999999886644
Q ss_pred hh
Q psy11002 188 TM 189 (195)
Q Consensus 188 ~~ 189 (195)
..
T Consensus 83 ~~ 84 (94)
T cd05031 83 AC 84 (94)
T ss_pred HH
Confidence 43
No 21
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.10 E-value=6.5e-10 Score=74.48 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=61.7
Q ss_pred hHHHHHHHhhHHcC--CCCCeeeHHHHHHHHHHHhCCCC----CHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhH
Q psy11002 113 KESKLRFAFRIYDM--DNDGFISNGELFQVLKMMVGNNL----KDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASI 186 (195)
Q Consensus 113 ~~~~~~~~F~~~D~--d~~G~Is~~el~~~l~~~~g~~~----~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~ 186 (195)
..+.++.+|..||. +++|.|+.+||..++....|..+ +.++++.++.. +|.+++|.|+|++|+.++....
T Consensus 6 ~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~----~d~~~~g~I~f~eF~~~~~~~~ 81 (88)
T cd00213 6 AIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKD----LDVNKDGKVDFQEFLVLIGKLA 81 (88)
T ss_pred HHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHH----hccCCCCcCcHHHHHHHHHHHH
Confidence 34678999999999 89999999999999976345444 58888888887 9999999999999999998775
Q ss_pred Hhhc
Q psy11002 187 ITMF 190 (195)
Q Consensus 187 ~~~~ 190 (195)
...+
T Consensus 82 ~~~~ 85 (88)
T cd00213 82 VACH 85 (88)
T ss_pred HHHh
Confidence 5443
No 22
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.09 E-value=7.7e-10 Score=74.84 Aligned_cols=70 Identities=21% Similarity=0.379 Sum_probs=59.6
Q ss_pred HHHHHHhhHHc-CCCCC-eeeHHHHHHHHHHHhC----CCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHh
Q psy11002 115 SKLRFAFRIYD-MDNDG-FISNGELFQVLKMMVG----NNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIIT 188 (195)
Q Consensus 115 ~~~~~~F~~~D-~d~~G-~Is~~el~~~l~~~~g----~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~ 188 (195)
+.++.+|..|| .+++| +|+.+||+.++...+| ..+++++++.+++. +|.+++|.|+|+||+.++.+....
T Consensus 9 ~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~----~D~d~~G~I~f~eF~~l~~~~~~~ 84 (92)
T cd05025 9 ETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKE----LDENGDGEVDFQEFVVLVAALTVA 84 (92)
T ss_pred HHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHH----HCCCCCCcCcHHHHHHHHHHHHHH
Confidence 67899999997 99999 5999999999975234 34678888888888 999999999999999998876443
No 23
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.09 E-value=1e-09 Score=74.85 Aligned_cols=67 Identities=27% Similarity=0.422 Sum_probs=59.6
Q ss_pred chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 112 DKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 112 ~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.....++.+|..+|.+++|.|+.+|++.++.. .| +++++++.++.. +|.+++|.|+++||+.++...
T Consensus 7 ~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~-~~--~~~~ev~~i~~~----~d~~~~g~I~~~eF~~~~~~~ 73 (96)
T smart00027 7 EDKAKYEQIFRSLDKNQDGTVTGAQAKPILLK-SG--LPQTLLAKIWNL----ADIDNDGELDKDEFALAMHLI 73 (96)
T ss_pred HHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHH-cC--CCHHHHHHHHHH----hcCCCCCCcCHHHHHHHHHHH
Confidence 34568999999999999999999999999987 55 788888888887 999999999999999988755
No 24
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=99.08 E-value=8.8e-10 Score=66.95 Aligned_cols=53 Identities=30% Similarity=0.533 Sum_probs=48.7
Q ss_pred CCCeeeHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 128 NDGFISNGELFQVLKMMVGNN-LKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 128 ~~G~Is~~el~~~l~~~~g~~-~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
++|.|+.++|+.++.. +|.. ++++++..++.. +|.+++|.|+|+||+.++..+
T Consensus 1 ~~G~i~~~~~~~~l~~-~g~~~~s~~e~~~l~~~----~D~~~~G~I~~~EF~~~~~~~ 54 (54)
T PF13833_consen 1 KDGKITREEFRRALSK-LGIKDLSEEEVDRLFRE----FDTDGDGYISFDEFISMMQRR 54 (54)
T ss_dssp SSSEEEHHHHHHHHHH-TTSSSSCHHHHHHHHHH----HTTSSSSSEEHHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH-hCCCCCCHHHHHHHHHh----cccCCCCCCCHHHHHHHHHhC
Confidence 4799999999999976 7998 999999999998 999999999999999998753
No 25
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.07 E-value=8.4e-10 Score=69.74 Aligned_cols=62 Identities=40% Similarity=0.484 Sum_probs=55.0
Q ss_pred HHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhH
Q psy11002 118 RFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASI 186 (195)
Q Consensus 118 ~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~ 186 (195)
+.+|+.+|.+++|.|+.+|++.++.. .| .+.++++.+++. +|.+++|.|+++||+.++....
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~-~g--~~~~~~~~i~~~----~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGK-SG--LPRSVLAQIWDL----ADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHH-cC--CCHHHHHHHHHH----hcCCCCCcCCHHHHHHHHHHHH
Confidence 56899999999999999999999988 56 488888888887 9999999999999999887553
No 26
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=99.06 E-value=1.6e-09 Score=72.80 Aligned_cols=72 Identities=21% Similarity=0.369 Sum_probs=59.6
Q ss_pred HHHHHHhhH-HcCCCCC-eeeHHHHHHHHHHHh----CCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHh
Q psy11002 115 SKLRFAFRI-YDMDNDG-FISNGELFQVLKMMV----GNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIIT 188 (195)
Q Consensus 115 ~~~~~~F~~-~D~d~~G-~Is~~el~~~l~~~~----g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~ 188 (195)
..+..+|.. +|.+++| +|+.+||+.++...+ +...++.+++++++. +|.|+||.|+|+||++++......
T Consensus 9 ~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~----~D~d~DG~I~f~EF~~l~~~l~~~ 84 (89)
T cd05023 9 ESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKK----LDLNSDGQLDFQEFLNLIGGLAVA 84 (89)
T ss_pred HHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHH----cCCCCCCcCcHHHHHHHHHHHHHH
Confidence 578889999 6788876 999999999999732 345677888888887 999999999999999998877544
Q ss_pred hc
Q psy11002 189 MF 190 (195)
Q Consensus 189 ~~ 190 (195)
.+
T Consensus 85 ~~ 86 (89)
T cd05023 85 CH 86 (89)
T ss_pred HH
Confidence 33
No 27
>KOG0027|consensus
Probab=99.05 E-value=1.1e-09 Score=80.82 Aligned_cols=69 Identities=36% Similarity=0.561 Sum_probs=64.6
Q ss_pred hHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhH
Q psy11002 113 KESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASI 186 (195)
Q Consensus 113 ~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~ 186 (195)
....++.+|+.||.+++|+|+..||..+++. +|..+++.++..++.. .|.+++|.|+++||+.++.+..
T Consensus 6 ~~~el~~~F~~fD~d~~G~i~~~el~~~lr~-lg~~~t~~el~~~~~~----~D~dg~g~I~~~eF~~l~~~~~ 74 (151)
T KOG0027|consen 6 QILELKEAFQLFDKDGDGKISVEELGAVLRS-LGQNPTEEELRDLIKE----IDLDGDGTIDFEEFLDLMEKLG 74 (151)
T ss_pred HHHHHHHHHHHHCCCCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHH----hCCCCCCeEcHHHHHHHHHhhh
Confidence 3468999999999999999999999999999 8999999999999998 9999999999999999998663
No 28
>KOG0377|consensus
Probab=99.03 E-value=1.2e-09 Score=90.91 Aligned_cols=126 Identities=17% Similarity=0.214 Sum_probs=88.4
Q ss_pred HHHHHHHHhhcCcCCCCCcCCCCCC-------CCCCCc-----ccccccccchhcccccHHHHHHHHhhcccCC------
Q psy11002 50 EDEFIQGVSQFSVKGDKDIDPLSKP-------AHFPSI-----HNVDSTFIYYIILYQFVSEFIQGVSQFSVKG------ 111 (195)
Q Consensus 50 ~~~~~~~F~~~D~~~~g~I~~~el~-------~~~~~~-----~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~------ 111 (195)
..++.+.|+.+|.+.+|.|+..+-. +...-+ +......+|.+ +|.+.+..+.......
T Consensus 463 ~sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v----~Y~~~~~~l~~e~~~~ea~~sl 538 (631)
T KOG0377|consen 463 RSDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKV----EYKSTLDNLDTEVILEEAGSSL 538 (631)
T ss_pred hhHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcce----ehHhHHHHhhhhhHHHHHHhHH
Confidence 4567788999999999999875322 222111 12222333344 7777666554221110
Q ss_pred -----chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHH---hCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 112 -----DKESKLRFAFRIYDMDNDGFISNGELFQVLKMM---VGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 112 -----~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~---~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
.....+..+|+..|.|++|.|+.+||+.+..-+ ....++++++.++.+. +|.|+||.|+++||+++++
T Consensus 539 vetLYr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~----mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 539 VETLYRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARS----MDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred HHHHHhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHh----hccCCCCcccHHHHHHHHh
Confidence 112356779999999999999999999977741 2356788888888887 9999999999999999876
No 29
>PTZ00183 centrin; Provisional
Probab=98.99 E-value=7.8e-09 Score=76.11 Aligned_cols=102 Identities=16% Similarity=0.152 Sum_probs=81.1
Q ss_pred CCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHH
Q psy11002 75 AHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQL 154 (195)
Q Consensus 75 ~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~ 154 (195)
.+...+..+|.+++|.+ +++||..++... ........+..+|..+|.+++|.|+.+||..++..........+.+
T Consensus 18 ~~~~~F~~~D~~~~G~i----~~~e~~~~l~~~-g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l 92 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTI----DPKELKVAMRSL-GFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGERDPREEI 92 (158)
T ss_pred HHHHHHHHhCCCCCCcc----cHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCCCcHHHH
Confidence 33444677888999988 999999988755 2334456899999999999999999999999887633445566666
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 155 QQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 155 ~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
+.+++. +|.+++|.|+.+||..++...
T Consensus 93 ~~~F~~----~D~~~~G~i~~~e~~~~l~~~ 119 (158)
T PTZ00183 93 LKAFRL----FDDDKTGKISLKNLKRVAKEL 119 (158)
T ss_pred HHHHHH----hCCCCCCcCcHHHHHHHHHHh
Confidence 666665 999999999999999998753
No 30
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.95 E-value=6.4e-09 Score=63.72 Aligned_cols=61 Identities=46% Similarity=0.783 Sum_probs=55.8
Q ss_pred HHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHH
Q psy11002 117 LRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVS 182 (195)
Q Consensus 117 ~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l 182 (195)
+..+|..+|.+++|.|+.+++..++.. .+...+.+.+..+++. +|.+++|.|++++|+.++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~-~~~~~~~~~~~~~~~~----~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKS-LGEGLSEEEIDEMIRE----VDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHH-hCCCCCHHHHHHHHHH----hCCCCCCeEeHHHHHHHh
Confidence 567899999999999999999999998 7888999988888887 999999999999998865
No 31
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=98.94 E-value=2.7e-09 Score=78.69 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=88.1
Q ss_pred CCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHH
Q psy11002 74 PAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQ 153 (195)
Q Consensus 74 ~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~ 153 (195)
..+...+..+|.+++|.| +..++..++..+ +...+...+..+|..+|. ++|.|+..+|..++........++++
T Consensus 20 ~~lkeaF~l~D~d~~G~I----~~~el~~ilr~l-g~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~~~~~~~Ee 93 (160)
T COG5126 20 QELKEAFQLFDRDSDGLI----DRNELGKILRSL-GFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKLKRGDKEEE 93 (160)
T ss_pred HHHHHHHHHhCcCCCCCC----cHHHHHHHHHHc-CCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHhccCCcHHH
Confidence 334444678889999998 999999999855 677888899999999999 99999999999999986667777888
Q ss_pred HHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 154 LQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 154 ~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
+...++. +|.|++|.|+..|++.++...
T Consensus 94 l~~aF~~----fD~d~dG~Is~~eL~~vl~~l 121 (160)
T COG5126 94 LREAFKL----FDKDHDGYISIGELRRVLKSL 121 (160)
T ss_pred HHHHHHH----hCCCCCceecHHHHHHHHHhh
Confidence 8888887 999999999999999998854
No 32
>KOG4223|consensus
Probab=98.93 E-value=9.3e-10 Score=88.34 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=99.8
Q ss_pred CCHHHHHHHHhhcCcCCCCCcCCCCCCCCCC-------------CcccccccccchhcccccHHHHHHHHhhcc------
Q psy11002 48 RNEDEFIQGVSQFSVKGDKDIDPLSKPAHFP-------------SIHNVDSTFIYYIILYQFVSEFIQGVSQFS------ 108 (195)
Q Consensus 48 ~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~-------------~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~------ 108 (195)
++...+..++..+|.+++|.|+..++..... .+...|.+.+|.| +|+|+...+....
T Consensus 74 e~~~rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i----~~eey~~~~~~~~~~~~~~ 149 (325)
T KOG4223|consen 74 ESQERLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFI----TWEEYLPQTYGRVDLPDEF 149 (325)
T ss_pred hhHHHHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccee----eHHHhhhhhhhcccCcccc
Confidence 4578899999999999999999998884432 2678889999888 9999999887531
Q ss_pred cCC-------chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHH
Q psy11002 109 VKG-------DKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSV 181 (195)
Q Consensus 109 ~~~-------~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~ 181 (195)
... ....+-+.-|+.-|.|++|.++.+||...|.--=...+.+..+.+-+.. +|.|+||+|+++||+.-
T Consensus 150 ~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d----~Dkn~DG~I~~eEfigd 225 (325)
T KOG4223|consen 150 PDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLED----IDKNGDGKISLEEFIGD 225 (325)
T ss_pred ccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhh----cccCCCCceeHHHHHhH
Confidence 111 1123456689999999999999999998876422334556666666666 99999999999999986
Q ss_pred HHhh
Q psy11002 182 STAS 185 (195)
Q Consensus 182 l~~~ 185 (195)
|-..
T Consensus 226 ~~~~ 229 (325)
T KOG4223|consen 226 LYSH 229 (325)
T ss_pred Hhhc
Confidence 6544
No 33
>PTZ00184 calmodulin; Provisional
Probab=98.92 E-value=1.4e-08 Score=73.79 Aligned_cols=98 Identities=17% Similarity=0.190 Sum_probs=76.7
Q ss_pred CCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHH
Q psy11002 78 PSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQI 157 (195)
Q Consensus 78 ~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l 157 (195)
..+..+|.+++|.+ +++||..++.... .....+.+..+|+.+|.+++|.|+.++|..++..........+.+..+
T Consensus 15 ~~F~~~D~~~~G~i----~~~e~~~~l~~~~-~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~ 89 (149)
T PTZ00184 15 EAFSLFDKDGDGTI----TTKELGTVMRSLG-QNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEA 89 (149)
T ss_pred HHHHHHcCCCCCcC----CHHHHHHHHHHhC-CCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHH
Confidence 44677888999988 9999999887653 334467899999999999999999999999987622333334444445
Q ss_pred HHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 158 VDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 158 ~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
++ .+|.+++|.|+.++|..++..
T Consensus 90 F~----~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 90 FK----VFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HH----hhCCCCCCeEeHHHHHHHHHH
Confidence 54 599999999999999988864
No 34
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.89 E-value=7.5e-09 Score=72.78 Aligned_cols=61 Identities=23% Similarity=0.436 Sum_probs=51.1
Q ss_pred HHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 114 ESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 114 ~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
...+.++|..+|.|++|.|+.+||..+. ....+..+..++.. +|.|+||.||++||..++.
T Consensus 47 ~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-----l~~~e~~~~~f~~~----~D~n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 47 KDPVGWMFNQLDGNYDGKLSHHELAPIR-----LDPNEHCIKPFFES----CDLDKDGSISLDEWCYCFI 107 (116)
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHH-----ccchHHHHHHHHHH----HCCCCCCCCCHHHHHHHHh
Confidence 4679999999999999999999999765 12345556666666 9999999999999999984
No 35
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.87 E-value=2.1e-09 Score=67.91 Aligned_cols=63 Identities=22% Similarity=0.416 Sum_probs=49.4
Q ss_pred HHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhccc---CCchHHHHHHHhhHHcCCC
Q psy11002 52 EFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSV---KGDKESKLRFAFRIYDMDN 128 (195)
Q Consensus 52 ~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~---~~~~~~~~~~~F~~~D~d~ 128 (195)
+++++|+.+|.+++|.|+ .+||..++..... .....+.+..+|+.+|.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~---------------------------~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~ 53 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYIS---------------------------KEELRRALKHLGRDMSDEESDEMIDQIFREFDTDG 53 (66)
T ss_dssp HHHHHHHHHSTTSSSEEE---------------------------HHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTS
T ss_pred CHHHHHHHHcCCccCCCC---------------------------HHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCC
Confidence 478999999999999875 6677777765532 2234457788899999999
Q ss_pred CCeeeHHHHHHHH
Q psy11002 129 DGFISNGELFQVL 141 (195)
Q Consensus 129 ~G~Is~~el~~~l 141 (195)
+|.|+.+||..++
T Consensus 54 dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 54 DGRISFDEFLNFM 66 (66)
T ss_dssp SSSEEHHHHHHHH
T ss_pred cCCCcHHHHhccC
Confidence 9999999998764
No 36
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.86 E-value=1.6e-08 Score=67.83 Aligned_cols=70 Identities=21% Similarity=0.382 Sum_probs=58.7
Q ss_pred HHHHHHhhHHcCC--CCCeeeHHHHHHHHHHHhCCCCC----HHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHh
Q psy11002 115 SKLRFAFRIYDMD--NDGFISNGELFQVLKMMVGNNLK----DAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIIT 188 (195)
Q Consensus 115 ~~~~~~F~~~D~d--~~G~Is~~el~~~l~~~~g~~~~----~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~ 188 (195)
..+...|..|+.+ ++|+|+.+||+.++....+..++ +++++.+++. +|.+++|.|+|+||+.++......
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~----~D~d~dG~I~f~eF~~~~~~~~~~ 83 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFED----LDTNQDGQLSFEEFLVLVIKVGVA 83 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHH----cCCCCCCcCcHHHHHHHHHHHHHH
Confidence 4677899999865 48999999999999854566666 8888888887 999999999999999998876443
No 37
>KOG0044|consensus
Probab=98.83 E-value=2.9e-08 Score=75.55 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=86.3
Q ss_pred CCCCHHHHHHHHhhcCcC-CCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHH
Q psy11002 46 VVRNEDEFIQGVSQFSVK-GDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIY 124 (195)
Q Consensus 46 ~~~~~~~~~~~F~~~D~~-~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~ 124 (195)
++-+..+++..++.|-.+ .+|.+ +-++|..+.....+..+...-...+|+.|
T Consensus 21 t~f~~~ei~~~Yr~Fk~~cP~G~~---------------------------~~~~F~~i~~~~fp~gd~~~y~~~vF~~f 73 (193)
T KOG0044|consen 21 TKFSKKEIQQWYRGFKNECPSGRL---------------------------TLEEFREIYASFFPDGDASKYAELVFRTF 73 (193)
T ss_pred cCCCHHHHHHHHHHhcccCCCCcc---------------------------CHHHHHHHHHHHCCCCCHHHHHHHHHHHh
Confidence 345788999999888766 36655 56678888888877777888889999999
Q ss_pred cCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 125 DMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 125 D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
|.|++|.|+..||..++.. +.....++. .+.+|+.+|.|+||.|+++|++.++...
T Consensus 74 D~~~dg~i~F~Efi~als~-~~rGt~eek----l~w~F~lyD~dgdG~It~~Eml~iv~~i 129 (193)
T KOG0044|consen 74 DKNKDGTIDFLEFICALSL-TSRGTLEEK----LKWAFRLYDLDGDGYITKEEMLKIVQAI 129 (193)
T ss_pred cccCCCCcCHHHHHHHHHH-HcCCcHHHH----hhhhheeecCCCCceEcHHHHHHHHHHH
Confidence 9999999999999999987 343333333 3455667999999999999999998865
No 38
>PF14658 EF-hand_9: EF-hand domain
Probab=98.80 E-value=3.8e-08 Score=61.61 Aligned_cols=63 Identities=22% Similarity=0.517 Sum_probs=56.6
Q ss_pred HHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCC-CceeHHHHHHHHHhh
Q psy11002 119 FAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDED-GKINFEEFCSVSTAS 185 (195)
Q Consensus 119 ~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~d-g~Is~~EF~~~l~~~ 185 (195)
.+|..||.++.|.|...++..+|+++.+..+++.+++.+... +|+++. |.|+++.|+..|+..
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~e----lDP~g~~~~v~~d~F~~iM~~w 65 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINE----LDPEGRDGSVNFDTFLAIMRDW 65 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHH----hCCCCCCceEeHHHHHHHHHHh
Confidence 379999999999999999999999954448999999999998 999987 999999999998764
No 39
>KOG0028|consensus
Probab=98.76 E-value=9.1e-08 Score=69.69 Aligned_cols=104 Identities=15% Similarity=0.133 Sum_probs=87.3
Q ss_pred CCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHH
Q psy11002 75 AHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQL 154 (195)
Q Consensus 75 ~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~ 154 (195)
.+...+..+|.++.|.+ +++|+-..+..+ ......+.+..+..-+|++++|.|+.++|..+++..++..-+.+++
T Consensus 34 ~i~e~f~lfd~~~~g~i----D~~EL~vAmral-GFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e~dt~eEi 108 (172)
T KOG0028|consen 34 EIKEAFELFDPDMAGKI----DVEELKVAMRAL-GFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGERDTKEEI 108 (172)
T ss_pred hHHHHHHhhccCCCCcc----cHHHHHHHHHHc-CCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhccCcHHHH
Confidence 34445778888899888 999996667665 3455667899999999999999999999999988757887899999
Q ss_pred HHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHH
Q psy11002 155 QQIVDKTILFADKDEDGKINFEEFCSVSTASII 187 (195)
Q Consensus 155 ~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~ 187 (195)
..+++. +|.+++|+||..+|..+.....+
T Consensus 109 ~~afrl----~D~D~~Gkis~~~lkrvakeLge 137 (172)
T KOG0028|consen 109 KKAFRL----FDDDKTGKISQRNLKRVAKELGE 137 (172)
T ss_pred HHHHHc----ccccCCCCcCHHHHHHHHHHhCc
Confidence 988888 99999999999999999887643
No 40
>KOG0031|consensus
Probab=98.63 E-value=2e-07 Score=67.51 Aligned_cols=73 Identities=23% Similarity=0.409 Sum_probs=62.6
Q ss_pred chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH-----------------------------Hh
Q psy11002 112 DKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDK-----------------------------TI 162 (195)
Q Consensus 112 ~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~-----------------------------~~ 162 (195)
.+.++++.+|.+.|+|+||.|..++|+..+.+ +|...++++++.++++ .|
T Consensus 29 ~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aS-lGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF 107 (171)
T KOG0031|consen 29 SQIQEFKEAFNLMDQNRDGFIDKEDLRDMLAS-LGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAF 107 (171)
T ss_pred HHHHHHHHHHHHHhccCCCcccHHHHHHHHHH-cCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 44578999999999999999999999999999 7998999999888876 37
Q ss_pred hhhCCCCCCceeHHHHHHHHHhh
Q psy11002 163 LFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 163 ~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
+.+|.++.|.|.-+.+.++|...
T Consensus 108 ~~FD~~~~G~I~~d~lre~Ltt~ 130 (171)
T KOG0031|consen 108 KTFDDEGSGKIDEDYLRELLTTM 130 (171)
T ss_pred HhcCccCCCccCHHHHHHHHHHh
Confidence 77888888888888887777754
No 41
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.43 E-value=4.3e-07 Score=47.80 Aligned_cols=28 Identities=39% Similarity=0.568 Sum_probs=25.8
Q ss_pred HHHHHhhHHcCCCCCeeeHHHHHHHHHH
Q psy11002 116 KLRFAFRIYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 116 ~~~~~F~~~D~d~~G~Is~~el~~~l~~ 143 (195)
+++.+|+.||+|++|+|+.+||..++++
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 4678999999999999999999999876
No 42
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.40 E-value=2.9e-06 Score=56.77 Aligned_cols=68 Identities=19% Similarity=0.437 Sum_probs=53.8
Q ss_pred HHHHHHhhHHcCCCCCeeeHHHHHHHHHHHh----CCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHH
Q psy11002 115 SKLRFAFRIYDMDNDGFISNGELFQVLKMMV----GNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASII 187 (195)
Q Consensus 115 ~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~----g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~ 187 (195)
..+..+|..|- .+.|+++..||+.++.+-+ ...-++..++++++. +|.|+||.|+|.||+.++.....
T Consensus 8 ~~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~----LD~n~Dg~vdF~EF~~Lv~~l~~ 79 (91)
T cd05024 8 EKMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKD----LDDCRDGKVGFQSFFSLIAGLLI 79 (91)
T ss_pred HHHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHH----hCCCCCCcCcHHHHHHHHHHHHH
Confidence 45677899887 4567999999999998632 344466777777776 99999999999999999876643
No 43
>KOG0037|consensus
Probab=98.38 E-value=1.8e-06 Score=66.08 Aligned_cols=121 Identities=17% Similarity=0.160 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCC-------cccccccccchhcccccHHHHHHHHhhcccCCchHHHHHH
Q psy11002 47 VRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPS-------IHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRF 119 (195)
Q Consensus 47 ~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~-------~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~ 119 (195)
.-+.+.++.+...||.+.+|+|...|+...... +...|.|..|.| +..|+...+..+- -.-..+.+..
T Consensus 90 ~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I----~~sEL~~Al~~~G-y~Lspq~~~~ 164 (221)
T KOG0037|consen 90 PFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTI----DSSELRQALTQLG-YRLSPQFYNL 164 (221)
T ss_pred CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcc----cHHHHHHHHHHcC-cCCCHHHHHH
Confidence 346888999999999999999999998855543 578999999998 9999999998874 3344568889
Q ss_pred HhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCc--eeHHHHHHHHH
Q psy11002 120 AFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGK--INFEEFCSVST 183 (195)
Q Consensus 120 ~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~--Is~~EF~~~l~ 183 (195)
+++.||..++|.|.+++|.++...+ . -+.+ +|++.|.+.+|. |+|++|+++..
T Consensus 165 lv~kyd~~~~g~i~FD~FI~ccv~L-~------~lt~----~Fr~~D~~q~G~i~~~y~dfl~~t~ 219 (221)
T KOG0037|consen 165 LVRKYDRFGGGRIDFDDFIQCCVVL-Q------RLTE----AFRRRDTAQQGSITISYDDFLQMTM 219 (221)
T ss_pred HHHHhccccCCceeHHHHHHHHHHH-H------HHHH----HHHHhccccceeEEEeHHHHHHHhh
Confidence 9999998889999999999988752 1 2223 355599998885 77899998753
No 44
>PLN02964 phosphatidylserine decarboxylase
Probab=98.37 E-value=2e-06 Score=76.50 Aligned_cols=80 Identities=20% Similarity=0.258 Sum_probs=63.7
Q ss_pred HHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCee
Q psy11002 53 FIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFI 132 (195)
Q Consensus 53 ~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 132 (195)
++++|..+|.+++|.| +|+||+.++... ......++++.+|+.||+|++|+|
T Consensus 181 i~~mf~~~D~DgdG~I---------------------------dfdEFl~lL~~l-g~~~seEEL~eaFk~fDkDgdG~I 232 (644)
T PLN02964 181 ARRILAIVDYDEDGQL---------------------------SFSEFSDLIKAF-GNLVAANKKEELFKAADLNGDGVV 232 (644)
T ss_pred HHHHHHHhCCCCCCeE---------------------------cHHHHHHHHHHh-ccCCCHHHHHHHHHHhCCCCCCcC
Confidence 6788888888887765 699999999865 345667789999999999999999
Q ss_pred eHHHHHHHHHHH------------hCCCCCH-HHHHHHHHH
Q psy11002 133 SNGELFQVLKMM------------VGNNLKD-AQLQQIVDK 160 (195)
Q Consensus 133 s~~el~~~l~~~------------~g~~~~~-~~~~~l~~~ 160 (195)
+.+||++++... +|..++. ++.+.|++.
T Consensus 233 s~dEL~~vL~~~~~~~~~~~~cp~cg~~l~~~~~~~~iiH~ 273 (644)
T PLN02964 233 TIDELAALLALQQEQEPIINNCPVCGEALGVSDKLNAMIHM 273 (644)
T ss_pred CHHHHHHHHHhcccCcchhhhchhhcCcccchhhHHHHHHH
Confidence 999999999862 3555555 566667754
No 45
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.37 E-value=1.5e-06 Score=58.28 Aligned_cols=68 Identities=19% Similarity=0.255 Sum_probs=54.1
Q ss_pred CHHHHHHHHhhcCc-CCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchH-HHHHHHhhHHcC
Q psy11002 49 NEDEFIQGVSQFSV-KGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKE-SKLRFAFRIYDM 126 (195)
Q Consensus 49 ~~~~~~~~F~~~D~-~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~-~~~~~~F~~~D~ 126 (195)
....+..+|+.||+ +++|.|+ ..|+..++....+..-.. +.+..+++..|.
T Consensus 6 ai~~l~~~F~~fd~~~~~g~i~---------------------------~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~ 58 (89)
T cd05022 6 AIETLVSNFHKASVKGGKESLT---------------------------ASEFQELLTQQLPHLLKDVEGLEEKMKNLDV 58 (89)
T ss_pred HHHHHHHHHHHHhCCCCCCeEC---------------------------HHHHHHHHHHHhhhhccCHHHHHHHHHHhCC
Confidence 46789999999999 8888875 567777776622222222 689999999999
Q ss_pred CCCCeeeHHHHHHHHHH
Q psy11002 127 DNDGFISNGELFQVLKM 143 (195)
Q Consensus 127 d~~G~Is~~el~~~l~~ 143 (195)
|++|.|+++||..++..
T Consensus 59 d~DG~I~F~EF~~l~~~ 75 (89)
T cd05022 59 NQDSKLSFEEFWELIGE 75 (89)
T ss_pred CCCCCCcHHHHHHHHHH
Confidence 99999999999998876
No 46
>KOG0036|consensus
Probab=98.34 E-value=1.8e-06 Score=71.81 Aligned_cols=77 Identities=18% Similarity=0.394 Sum_probs=65.3
Q ss_pred chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHhhc
Q psy11002 112 DKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNN-LKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIITMF 190 (195)
Q Consensus 112 ~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~-~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~~~ 190 (195)
..+.+++..|+.+|.+++|.++.+++.+.+.+ +..+ .+.+.+..++.. +|.|.||.++|.||.+++....+++.
T Consensus 11 er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~-l~~~~~~~~~~~~l~~~----~d~~~dg~vDy~eF~~Y~~~~E~~l~ 85 (463)
T KOG0036|consen 11 ERDIRIRCLFKELDSKNDGQVDLDQLEKGLEK-LDHPKPNYEAAKMLFSA----MDANRDGRVDYSEFKRYLDNKELELY 85 (463)
T ss_pred HHHHHHHHHHHHhccCCCCceeHHHHHHHHHh-cCCCCCchHHHHHHHHh----cccCcCCcccHHHHHHHHHHhHHHHH
Confidence 34567899999999999999999999999998 5554 777777777777 99999999999999999998877775
Q ss_pred CCC
Q psy11002 191 PTF 193 (195)
Q Consensus 191 ~~~ 193 (195)
+.|
T Consensus 86 ~~F 88 (463)
T KOG0036|consen 86 RIF 88 (463)
T ss_pred HHH
Confidence 554
No 47
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.31 E-value=2e-06 Score=58.25 Aligned_cols=68 Identities=13% Similarity=0.165 Sum_probs=52.8
Q ss_pred CHHHHHHHHhhcC-cCCCC-CcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhc----ccCCchHHHHHHHhh
Q psy11002 49 NEDEFIQGVSQFS-VKGDK-DIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQF----SVKGDKESKLRFAFR 122 (195)
Q Consensus 49 ~~~~~~~~F~~~D-~~~~g-~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~----~~~~~~~~~~~~~F~ 122 (195)
....+.++|..|| .|++| +|+ ..|+..++... .........+..+++
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is---------------------------~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~ 60 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLS---------------------------KGELKELLQRELTDFLSSQKDPMLVDKIMN 60 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEEC---------------------------HHHHHHHHHHHhHHhcccccCHHHHHHHHH
Confidence 4678889999999 78998 475 55666666432 122335568999999
Q ss_pred HHcCCCCCeeeHHHHHHHHHH
Q psy11002 123 IYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 123 ~~D~d~~G~Is~~el~~~l~~ 143 (195)
.+|.|++|.|+.+||..++..
T Consensus 61 elD~n~dG~Idf~EF~~l~~~ 81 (93)
T cd05026 61 DLDSNKDNEVDFNEFVVLVAA 81 (93)
T ss_pred HhCCCCCCCCCHHHHHHHHHH
Confidence 999999999999999999887
No 48
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.30 E-value=2.3e-06 Score=58.19 Aligned_cols=77 Identities=16% Similarity=0.224 Sum_probs=59.5
Q ss_pred CCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHH
Q psy11002 45 IVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIY 124 (195)
Q Consensus 45 l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~ 124 (195)
++..+.++++.+|..+|.+++|.|+ .+|+..++... ....+.+..+|..+
T Consensus 4 ls~~~~~~l~~~F~~~D~d~~G~Is---------------------------~~el~~~l~~~---~~~~~ev~~i~~~~ 53 (96)
T smart00027 4 ISPEDKAKYEQIFRSLDKNQDGTVT---------------------------GAQAKPILLKS---GLPQTLLAKIWNLA 53 (96)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCeEe---------------------------HHHHHHHHHHc---CCCHHHHHHHHHHh
Confidence 3445788999999999999999875 66676666553 23456889999999
Q ss_pred cCCCCCeeeHHHHHHHHHHH----hCCCCCH
Q psy11002 125 DMDNDGFISNGELFQVLKMM----VGNNLKD 151 (195)
Q Consensus 125 D~d~~G~Is~~el~~~l~~~----~g~~~~~ 151 (195)
|.+++|.|+.+||..++..+ .|.+++.
T Consensus 54 d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~ 84 (96)
T smart00027 54 DIDNDGELDKDEFALAMHLIYRKLNGYPIPA 84 (96)
T ss_pred cCCCCCCcCHHHHHHHHHHHHHHHcCCCCCc
Confidence 99999999999999988751 2555554
No 49
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.30 E-value=3.8e-06 Score=56.23 Aligned_cols=68 Identities=22% Similarity=0.281 Sum_probs=54.4
Q ss_pred CHHHHHHHHhhcC-cCCCC-CcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhh----cccCCchHHHHHHHhh
Q psy11002 49 NEDEFIQGVSQFS-VKGDK-DIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQ----FSVKGDKESKLRFAFR 122 (195)
Q Consensus 49 ~~~~~~~~F~~~D-~~~~g-~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~----~~~~~~~~~~~~~~F~ 122 (195)
...+++++|+.|| .+|+| .|+ .+|+..++.. ........+.+..+++
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~---------------------------~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~ 58 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLK---------------------------KSELKELINNELSHFLEEIKEQEVVDKVME 58 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEEC---------------------------HHHHHHHHHHHhHHHhcCCCCHHHHHHHHH
Confidence 3678999999998 78999 475 5566666665 2234456678999999
Q ss_pred HHcCCCCCeeeHHHHHHHHHH
Q psy11002 123 IYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 123 ~~D~d~~G~Is~~el~~~l~~ 143 (195)
..|.|++|.|+.+||..++..
T Consensus 59 ~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 59 TLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HhCCCCCCcCcHHHHHHHHHH
Confidence 999999999999999998875
No 50
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.30 E-value=2.5e-06 Score=57.55 Aligned_cols=68 Identities=15% Similarity=0.190 Sum_probs=52.7
Q ss_pred CHHHHHHHHhhcC-cCCCC-CcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhh-c---ccCCchHHHHHHHhh
Q psy11002 49 NEDEFIQGVSQFS-VKGDK-DIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQ-F---SVKGDKESKLRFAFR 122 (195)
Q Consensus 49 ~~~~~~~~F~~~D-~~~~g-~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~-~---~~~~~~~~~~~~~F~ 122 (195)
.+++++++|+.|| .+++| .|+ ..|+..++.. . .......+.+..+|+
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is---------------------------~~El~~~l~~~lg~~~~~~~s~~~v~~i~~ 59 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLS---------------------------KKELKDLLQTELSDFLDAQKDADAVDKIMK 59 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeEC---------------------------HHHHHHHHHHHHHHHccCCCCHHHHHHHHH
Confidence 3678999999997 99999 476 4455555542 1 122345678999999
Q ss_pred HHcCCCCCeeeHHHHHHHHHH
Q psy11002 123 IYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 123 ~~D~d~~G~Is~~el~~~l~~ 143 (195)
.+|.+++|.|+.++|..++..
T Consensus 60 ~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 60 ELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHCCCCCCcCcHHHHHHHHHH
Confidence 999999999999999998876
No 51
>KOG2643|consensus
Probab=98.30 E-value=1e-06 Score=73.59 Aligned_cols=123 Identities=17% Similarity=0.208 Sum_probs=87.9
Q ss_pred CHHHHHHHHhhcCcCCCCCcCCCCCCCCCCC------------------------------cccccccccchhcccccHH
Q psy11002 49 NEDEFIQGVSQFSVKGDKDIDPLSKPAHFPS------------------------------IHNVDSTFIYYIILYQFVS 98 (195)
Q Consensus 49 ~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~------------------------------~~~~d~~~~g~i~~~i~f~ 98 (195)
....++-+|+.||.||||.|+.+|+...... ..-+-.++++. ++++
T Consensus 231 p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG~rg~~k----Ls~d 306 (489)
T KOG2643|consen 231 PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFGKRGNGK----LSID 306 (489)
T ss_pred CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhccCCCcc----ccHH
Confidence 3567788899999999999999987622211 12233344444 4999
Q ss_pred HHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHH
Q psy11002 99 EFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEF 178 (195)
Q Consensus 99 eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF 178 (195)
+|+..+... +++-++.-|..+|+..+|.|+..+|..++-...+ ++.+....+.+.+-+.++.+ +..||++||
T Consensus 307 eF~~F~e~L-----q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~--~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef 378 (489)
T KOG2643|consen 307 EFLKFQENL-----QEEILELEFERFDKGDSGAISEVDFAELLLAYAG--VNSKKKHKYLKRVKEKFKDD-GKGISLQEF 378 (489)
T ss_pred HHHHHHHHH-----HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcc--cchHhHHHHHHHHHHhccCC-CCCcCHHHH
Confidence 999999776 3567788999999999999999999998875333 34444444555544457755 556999998
Q ss_pred HHHHH
Q psy11002 179 CSVST 183 (195)
Q Consensus 179 ~~~l~ 183 (195)
.++..
T Consensus 379 ~~Ff~ 383 (489)
T KOG2643|consen 379 KAFFR 383 (489)
T ss_pred HHHHH
Confidence 88754
No 52
>KOG0030|consensus
Probab=98.28 E-value=3.4e-06 Score=60.22 Aligned_cols=70 Identities=24% Similarity=0.470 Sum_probs=60.1
Q ss_pred CchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCC--CCCceeHHHHHHHHHhh
Q psy11002 111 GDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKD--EDGKINFEEFCSVSTAS 185 (195)
Q Consensus 111 ~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~--~dg~Is~~EF~~~l~~~ 185 (195)
.+..++++.+|..||..++|+|+..+...+++. +|.++++.++.+.+.. .+.+ +-..|+|++|+-+++..
T Consensus 7 ~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRa-lG~nPT~aeV~k~l~~----~~~~~~~~~rl~FE~fLpm~q~v 78 (152)
T KOG0030|consen 7 PDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRA-LGQNPTNAEVLKVLGQ----PKRREMNVKRLDFEEFLPMYQQV 78 (152)
T ss_pred cchHHHHHHHHHHHhccCcccccHHHHHHHHHH-hcCCCcHHHHHHHHcC----cccchhhhhhhhHHHHHHHHHHH
Confidence 445589999999999999999999999999999 7999999999888876 5555 34679999999888754
No 53
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.28 E-value=1.8e-06 Score=46.13 Aligned_cols=28 Identities=46% Similarity=0.799 Sum_probs=25.0
Q ss_pred HHHHHhhHHcCCCCCeeeHHHHHHHHH-H
Q psy11002 116 KLRFAFRIYDMDNDGFISNGELFQVLK-M 143 (195)
Q Consensus 116 ~~~~~F~~~D~d~~G~Is~~el~~~l~-~ 143 (195)
+++.+|+.||.|++|+|+.+||+.+++ +
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~ 29 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKS 29 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHh
Confidence 478899999999999999999999998 5
No 54
>KOG0041|consensus
Probab=98.27 E-value=4.6e-06 Score=63.11 Aligned_cols=67 Identities=30% Similarity=0.502 Sum_probs=58.6
Q ss_pred HHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 114 ESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 114 ~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.+.+...|+.||.+.||+|+..||+..+.+ +|.+-+.=-+++++++ .|-|.||+||+-||+-.+...
T Consensus 98 Ik~~~~~Fk~yDe~rDgfIdl~ELK~mmEK-LgapQTHL~lK~mike----Vded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 98 IKDAESMFKQYDEDRDGFIDLMELKRMMEK-LGAPQTHLGLKNMIKE----VDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHHHHhcccccccccHHHHHHHHHH-hCCchhhHHHHHHHHH----hhcccccchhHHHHHHHHHHH
Confidence 357788999999999999999999999999 7876666667788887 999999999999999877654
No 55
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.26 E-value=3.3e-06 Score=59.42 Aligned_cols=64 Identities=20% Similarity=0.106 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcC
Q psy11002 47 VRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDM 126 (195)
Q Consensus 47 ~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~ 126 (195)
+....++...|..+|.|+||.|+.. |...+. ....+..+...|..+|.
T Consensus 44 ~~~~~~l~w~F~~lD~d~DG~Ls~~---------------------------EL~~~~-----l~~~e~~~~~f~~~~D~ 91 (116)
T cd00252 44 PMCKDPVGWMFNQLDGNYDGKLSHH---------------------------ELAPIR-----LDPNEHCIKPFFESCDL 91 (116)
T ss_pred HHHHHHHHHHHHHHCCCCCCcCCHH---------------------------HHHHHH-----ccchHHHHHHHHHHHCC
Confidence 4567889999999999999998654 544433 11335677889999999
Q ss_pred CCCCeeeHHHHHHHHH
Q psy11002 127 DNDGFISNGELFQVLK 142 (195)
Q Consensus 127 d~~G~Is~~el~~~l~ 142 (195)
|++|.||.+|+..++.
T Consensus 92 n~Dg~IS~~Ef~~cl~ 107 (116)
T cd00252 92 DKDGSISLDEWCYCFI 107 (116)
T ss_pred CCCCCCCHHHHHHHHh
Confidence 9999999999999884
No 56
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.25 E-value=6e-06 Score=50.12 Aligned_cols=61 Identities=23% Similarity=0.343 Sum_probs=50.0
Q ss_pred HHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCee
Q psy11002 53 FIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFI 132 (195)
Q Consensus 53 ~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 132 (195)
+..+|..+|.+++|.| ++++|..++... ......+.+..+|..+|.+++|.|
T Consensus 2 ~~~~f~~~d~~~~g~l---------------------------~~~e~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~l 53 (63)
T cd00051 2 LREAFRLFDKDGDGTI---------------------------SADELKAALKSL-GEGLSEEEIDEMIREVDKDGDGKI 53 (63)
T ss_pred HHHHHHHhCCCCCCcC---------------------------cHHHHHHHHHHh-CCCCCHHHHHHHHHHhCCCCCCeE
Confidence 5677888888888876 578888888766 355566788999999999999999
Q ss_pred eHHHHHHHH
Q psy11002 133 SNGELFQVL 141 (195)
Q Consensus 133 s~~el~~~l 141 (195)
+.++|..++
T Consensus 54 ~~~ef~~~~ 62 (63)
T cd00051 54 DFEEFLELM 62 (63)
T ss_pred eHHHHHHHh
Confidence 999998765
No 57
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.24 E-value=3.1e-06 Score=56.49 Aligned_cols=69 Identities=10% Similarity=0.147 Sum_probs=54.3
Q ss_pred CCHHHHHHHHhhcCc--CCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhccc----CCchHHHHHHHh
Q psy11002 48 RNEDEFIQGVSQFSV--KGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSV----KGDKESKLRFAF 121 (195)
Q Consensus 48 ~~~~~~~~~F~~~D~--~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~----~~~~~~~~~~~F 121 (195)
+++++++.+|..||. +++|.|+ ..|+..++..... .....+.+..++
T Consensus 5 ~~~~~l~~~F~~~D~~~~~~G~Is---------------------------~~el~~~l~~~~g~~~~~~~~~~ei~~i~ 57 (88)
T cd00213 5 KAIETIIDVFHKYSGKEGDKDTLS---------------------------KKELKELLETELPNFLKNQKDPEAVDKIM 57 (88)
T ss_pred HHHHHHHHHHHHHhhccCCCCcCc---------------------------HHHHHHHHHHHhhhhccCCCCHHHHHHHH
Confidence 467889999999999 8999875 5566666643211 112457899999
Q ss_pred hHHcCCCCCeeeHHHHHHHHHH
Q psy11002 122 RIYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 122 ~~~D~d~~G~Is~~el~~~l~~ 143 (195)
..+|.+++|.|+.++|..++..
T Consensus 58 ~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 58 KDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHhccCCCCcCcHHHHHHHHHH
Confidence 9999999999999999998876
No 58
>KOG4666|consensus
Probab=98.19 E-value=4.4e-06 Score=67.52 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=85.7
Q ss_pred CCCCcCCCCCCCCC---------CCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeH
Q psy11002 64 GDKDIDPLSKPAHF---------PSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISN 134 (195)
Q Consensus 64 ~~g~I~~~el~~~~---------~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~ 134 (195)
+.+.|...++...+ +++..+|.+++|.+ +|.|....++..+.......-++-+|+.|+.+.||.+..
T Consensus 240 kg~~igi~efa~~l~vpvsd~l~~~f~LFde~~tg~~----D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge 315 (412)
T KOG4666|consen 240 KGPDIGIVEFAVNLRVPVSDKLAPTFMLFDEGTTGNG----DYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGE 315 (412)
T ss_pred cCCCcceeEeeeeeecchhhhhhhhhheecCCCCCcc----cHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccch
Confidence 44555555554322 34667777777776 999999999999888888899999999999999999999
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 135 GELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 135 ~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.+|.-+++..+|. ..=.+- -+|++++...+|+|++.+|..++...
T Consensus 316 ~~ls~ilq~~lgv--~~l~v~----~lf~~i~q~d~~ki~~~~f~~fa~~~ 360 (412)
T KOG4666|consen 316 HILSLILQVVLGV--EVLRVP----VLFPSIEQKDDPKIYASNFRKFAATE 360 (412)
T ss_pred HHHHHHHHHhcCc--ceeecc----ccchhhhcccCcceeHHHHHHHHHhC
Confidence 9999999875553 222222 34445898889999999999988765
No 59
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.18 E-value=5.3e-06 Score=56.14 Aligned_cols=67 Identities=10% Similarity=0.155 Sum_probs=52.4
Q ss_pred HHHHHHHHhhcCc-CC-CCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhc----ccCCchHHHHHHHhhH
Q psy11002 50 EDEFIQGVSQFSV-KG-DKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQF----SVKGDKESKLRFAFRI 123 (195)
Q Consensus 50 ~~~~~~~F~~~D~-~~-~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~----~~~~~~~~~~~~~F~~ 123 (195)
..+++.+|..||. ++ +|.|+ ..|+..++... .......+.+..+++.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is---------------------------~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~ 59 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLS---------------------------RKELKKLMEKELSEFLKNQKDPMAVDKIMKD 59 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeEC---------------------------HHHHHHHHHHHhHHHhhccccHHHHHHHHHH
Confidence 5789999999997 87 69875 55666655431 1223456789999999
Q ss_pred HcCCCCCeeeHHHHHHHHHH
Q psy11002 124 YDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 124 ~D~d~~G~Is~~el~~~l~~ 143 (195)
+|.+++|.|+.+||..++..
T Consensus 60 ~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 60 LDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred hCCCCCCcCcHHHHHHHHHH
Confidence 99999999999999998876
No 60
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.18 E-value=3.6e-06 Score=44.24 Aligned_cols=28 Identities=43% Similarity=0.688 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 153 QLQQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 153 ~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
+++++++. +|.|+||.|+++||..++.+
T Consensus 1 E~~~~F~~----~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFRE----FDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHH----HSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHH----HCCCCCCcCCHHHHHHHHHh
Confidence 34556666 99999999999999999875
No 61
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.17 E-value=6.9e-06 Score=49.54 Aligned_cols=50 Identities=26% Similarity=0.341 Sum_probs=41.5
Q ss_pred ccccHHHHHHHHhhcccCC-chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHH
Q psy11002 93 LYQFVSEFIQGVSQFSVKG-DKESKLRFAFRIYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 93 ~~i~f~eF~~~~~~~~~~~-~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~ 143 (195)
|.|+.++|..++... ... ...+.+..+|..+|.+++|+|+.+||..++..
T Consensus 3 G~i~~~~~~~~l~~~-g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 3 GKITREEFRRALSKL-GIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SEEEHHHHHHHHHHT-TSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CEECHHHHHHHHHHh-CCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 345999999999544 334 56677999999999999999999999998864
No 62
>KOG4251|consensus
Probab=98.17 E-value=2e-06 Score=67.04 Aligned_cols=87 Identities=18% Similarity=0.187 Sum_probs=62.0
Q ss_pred HHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHH----HhCCCCCHHHHHHHHHHHhhhhCCCCCCce
Q psy11002 98 SEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKM----MVGNNLKDAQLQQIVDKTILFADKDEDGKI 173 (195)
Q Consensus 98 ~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~----~~g~~~~~~~~~~l~~~~~~~~d~~~dg~I 173 (195)
+||+.++......+.....++.+.+.+|+|++..++..||..+..- .-|..+.+.+++.-.+++-..+|.|+||.+
T Consensus 219 eEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGiv 298 (362)
T KOG4251|consen 219 EEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIV 298 (362)
T ss_pred HHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccce
Confidence 4444444333222223344677889999999999999999875531 135677777777777777778999999999
Q ss_pred eHHHHHHHHHh
Q psy11002 174 NFEEFCSVSTA 184 (195)
Q Consensus 174 s~~EF~~~l~~ 184 (195)
+++|...++.+
T Consensus 299 TaeELe~y~dP 309 (362)
T KOG4251|consen 299 TAEELEDYVDP 309 (362)
T ss_pred eHHHHHhhcCc
Confidence 99999887653
No 63
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.17 E-value=7.5e-06 Score=51.32 Aligned_cols=61 Identities=20% Similarity=0.178 Sum_probs=48.6
Q ss_pred HHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCee
Q psy11002 53 FIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFI 132 (195)
Q Consensus 53 ~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 132 (195)
++++|..+|++++|.|+ .+|+..++.... ...+.+..+|+.+|.+++|.|
T Consensus 1 ~~~~F~~~D~~~~G~i~---------------------------~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i 50 (67)
T cd00052 1 YDQIFRSLDPDGDGLIS---------------------------GDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKL 50 (67)
T ss_pred ChHHHHHhCCCCCCcCc---------------------------HHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcC
Confidence 36788999999988875 557766665531 245678999999999999999
Q ss_pred eHHHHHHHHHH
Q psy11002 133 SNGELFQVLKM 143 (195)
Q Consensus 133 s~~el~~~l~~ 143 (195)
+.+||..++..
T Consensus 51 ~~~ef~~~~~~ 61 (67)
T cd00052 51 DKEEFAIAMHL 61 (67)
T ss_pred CHHHHHHHHHH
Confidence 99999998875
No 64
>KOG2643|consensus
Probab=98.14 E-value=1.4e-06 Score=72.86 Aligned_cols=125 Identities=15% Similarity=0.207 Sum_probs=87.6
Q ss_pred HHHHHHHHhhcCcCCCCCcCCCCCCCCCCC----------------cccccccccchhcccccHHHHHHHHhhcccCCch
Q psy11002 50 EDEFIQGVSQFSVKGDKDIDPLSKPAHFPS----------------IHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDK 113 (195)
Q Consensus 50 ~~~~~~~F~~~D~~~~g~I~~~el~~~~~~----------------~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~ 113 (195)
.+-++--|..+|+..+|.|++.++...+.. ...++.+ +.. |+++||.+.+.-. ..
T Consensus 317 ~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~g----ISl~Ef~~Ff~Fl----~~ 387 (489)
T KOG2643|consen 317 EEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKG----ISLQEFKAFFRFL----NN 387 (489)
T ss_pred HHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCC----cCHHHHHHHHHHH----hh
Confidence 444555699999998899999887743322 1122222 222 4888888877554 22
Q ss_pred HHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHh
Q psy11002 114 ESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIIT 188 (195)
Q Consensus 114 ~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~ 188 (195)
.+.+..|...|- ...+.|+..+|+++.....|..+++..++-++. -+|.|+||.++++||+.+|.++...
T Consensus 388 l~dfd~Al~fy~-~Ag~~i~~~~f~raa~~vtGveLSdhVvdvvF~----IFD~N~Dg~LS~~EFl~Vmk~Rmhr 457 (489)
T KOG2643|consen 388 LNDFDIALRFYH-MAGASIDEKTFQRAAKVVTGVELSDHVVDVVFT----IFDENNDGTLSHKEFLAVMKRRMHR 457 (489)
T ss_pred hhHHHHHHHHHH-HcCCCCCHHHHHHHHHHhcCcccccceeeeEEE----EEccCCCCcccHHHHHHHHHHHhhc
Confidence 345555555553 356779999999999987899998875544444 4999999999999999999987544
No 65
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.10 E-value=3e-05 Score=53.44 Aligned_cols=65 Identities=34% Similarity=0.458 Sum_probs=55.4
Q ss_pred CchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 111 GDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 111 ~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
..+......+|...|. ++|.|+-++.+.++.+ .+ ++.+.+..++.. .|.+++|+++++||+-+|.
T Consensus 6 ~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~-S~--L~~~~L~~IW~L----aD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 6 PEEKQKYDQIFQSLDP-QDGKISGDQAREFFMK-SG--LPRDVLAQIWNL----ADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp CCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHH-TT--SSHHHHHHHHHH----H-SSSSSEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH-cC--CCHHHHHHHHhh----hcCCCCCcCCHHHHHHHHH
Confidence 4556788899999985 6899999999999986 44 888999888888 9999999999999998765
No 66
>KOG2562|consensus
Probab=98.09 E-value=8.2e-06 Score=68.77 Aligned_cols=126 Identities=19% Similarity=0.233 Sum_probs=87.0
Q ss_pred HHHHHHH---HhhcCcCCCCCcCCCCCCCCCCC------ccccc----ccccchhcccccHHHHHHHHhhcccCCchHHH
Q psy11002 50 EDEFIQG---VSQFSVKGDKDIDPLSKPAHFPS------IHNVD----STFIYYIILYQFVSEFIQGVSQFSVKGDKESK 116 (195)
Q Consensus 50 ~~~~~~~---F~~~D~~~~g~I~~~el~~~~~~------~~~~d----~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~ 116 (195)
.+.+..+ |..+|+|+||.|+.++|..+-.. ++.+- ....-..+|.++|++|+-++.... ......-
T Consensus 274 ~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e-~k~t~~S 352 (493)
T KOG2562|consen 274 YEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEE-DKDTPAS 352 (493)
T ss_pred HHHHHHHHHHHhhhccccccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhc-cCCCccc
Confidence 4455555 88899999999999988733221 12221 222223335669999999988774 4455568
Q ss_pred HHHHhhHHcCCCCCeeeHHHHHHHHHHHh------C-CCCC-HHHHHHHHHHHhhhhCCCCCCceeHHHHHH
Q psy11002 117 LRFAFRIYDMDNDGFISNGELFQVLKMMV------G-NNLK-DAQLQQIVDKTILFADKDEDGKINFEEFCS 180 (195)
Q Consensus 117 ~~~~F~~~D~d~~G~Is~~el~~~l~~~~------g-~~~~-~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~ 180 (195)
+.-+|+.+|.+++|.++.+|++-.....+ + ..++ ++.+.++++. +.+-..++|+..+|..
T Consensus 353 leYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DM----vkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 353 LEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDM----VKPEDENKITLQDLKG 420 (493)
T ss_pred hhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH----hCccCCCceeHHHHhh
Confidence 99999999999999999999987766411 1 2233 3334445554 7877889999999987
No 67
>KOG0034|consensus
Probab=98.05 E-value=8.9e-06 Score=61.89 Aligned_cols=100 Identities=17% Similarity=0.169 Sum_probs=72.4
Q ss_pred CCCCCCCCccccccc-ccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCe-eeHHHHHHHHHHHhCCCC
Q psy11002 72 SKPAHFPSIHNVDST-FIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGF-ISNGELFQVLKMMVGNNL 149 (195)
Q Consensus 72 el~~~~~~~~~~d~~-~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~-Is~~el~~~l~~~~g~~~ 149 (195)
|+...+..+..++.+ +.|.+ +.+||..+..... ......++..||.+++|. |++++|.+++.. ....-
T Consensus 31 EI~~L~~rF~kl~~~~~~g~l----t~eef~~i~~~~~-----Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~-f~~~~ 100 (187)
T KOG0034|consen 31 EIERLYERFKKLDRNNGDGYL----TKEEFLSIPELAL-----NPLADRIIDRFDTDGNGDPVDFEEFVRLLSV-FSPKA 100 (187)
T ss_pred HHHHHHHHHHHhccccccCcc----CHHHHHHHHHHhc-----CcHHHHHHHHHhccCCCCccCHHHHHHHHhh-hcCCc
Confidence 333333344555555 66766 9999999884442 234556888899998888 999999999997 45544
Q ss_pred CHH-HHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 150 KDA-QLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 150 ~~~-~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
+.+ .++-+ |+.+|.+++|.|+.+|+.+++...
T Consensus 101 ~~~~Kl~fa----F~vYD~~~~G~I~reel~~iv~~~ 133 (187)
T KOG0034|consen 101 SKREKLRFA----FRVYDLDGDGFISREELKQILRMM 133 (187)
T ss_pred cHHHHHHHH----HHHhcCCCCCcCcHHHHHHHHHHH
Confidence 444 44444 555999999999999999988765
No 68
>KOG4251|consensus
Probab=98.02 E-value=4.1e-06 Score=65.36 Aligned_cols=126 Identities=14% Similarity=0.080 Sum_probs=90.1
Q ss_pred CHHHHHHHHhhcCcCCCCCcCCCCCCCCCC----------------CcccccccccchhcccccHHHHHHHHhhcccCCc
Q psy11002 49 NEDEFIQGVSQFSVKGDKDIDPLSKPAHFP----------------SIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGD 112 (195)
Q Consensus 49 ~~~~~~~~F~~~D~~~~g~I~~~el~~~~~----------------~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~ 112 (195)
....++.+|...|.|.||.|+..|+..... .++.+|.+++|.+ .++||..-+...... +
T Consensus 99 srrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhv----sWdEykvkFlaskgh-s 173 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHV----SWDEYKVKFLASKGH-S 173 (362)
T ss_pred HHHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCce----ehhhhhhHHHhhcCc-c
Confidence 467899999999999999999987773332 2789999999998 999998776543221 1
Q ss_pred hH--------------HHHHHHhhHHcCCCCCeeeH---------HHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCC
Q psy11002 113 KE--------------SKLRFAFRIYDMDNDGFISN---------GELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDE 169 (195)
Q Consensus 113 ~~--------------~~~~~~F~~~D~d~~G~Is~---------~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~ 169 (195)
.. +.-...|..-++++.|.... +||...| ....+...+..+++.+.+.+|.|+
T Consensus 174 ekevadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFL----HPEhSrgmLrfmVkeivrdlDqdg 249 (362)
T KOG4251|consen 174 EKEVADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFL----HPEHSRGMLRFMVKEIVRDLDQDG 249 (362)
T ss_pred hHHHHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHc----ChHhhhhhHHHHHHHHHHHhccCC
Confidence 11 11223444555566665554 6665544 444566677788888888899999
Q ss_pred CCceeHHHHHHHHH
Q psy11002 170 DGKINFEEFCSVST 183 (195)
Q Consensus 170 dg~Is~~EF~~~l~ 183 (195)
|..+|-.+|+....
T Consensus 250 DkqlSvpeFislpv 263 (362)
T KOG4251|consen 250 DKQLSVPEFISLPV 263 (362)
T ss_pred CeeecchhhhcCCC
Confidence 99999999997643
No 69
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.99 E-value=1.2e-05 Score=40.74 Aligned_cols=25 Identities=40% Similarity=0.586 Sum_probs=22.3
Q ss_pred HHHHhhHHcCCCCCeeeHHHHHHHH
Q psy11002 117 LRFAFRIYDMDNDGFISNGELFQVL 141 (195)
Q Consensus 117 ~~~~F~~~D~d~~G~Is~~el~~~l 141 (195)
++.+|+.+|.|++|.|+.+||.+++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 4678999999999999999999864
No 70
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.92 E-value=5.3e-05 Score=64.04 Aligned_cols=57 Identities=33% Similarity=0.484 Sum_probs=47.3
Q ss_pred CchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 111 GDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 111 ~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
......++.+|+.+|.+++|.|+.+||.. .+.+++. +|.|+||.|+++||.+.+...
T Consensus 330 ~~~~~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~----~D~d~DG~Is~eEf~~~~~~~ 386 (391)
T PRK12309 330 EAFTHAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDA----LDLNHDGKITPEEMRAGLGAA 386 (391)
T ss_pred ChhhHHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHH----hCCCCCCCCcHHHHHHHHHHH
Confidence 44457789999999999999999999931 2445555 999999999999999988754
No 71
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=97.90 E-value=6.9e-05 Score=50.13 Aligned_cols=68 Identities=10% Similarity=0.068 Sum_probs=53.0
Q ss_pred CHHHHHHHHhhcCc-CC-CCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhc--ccCCchHHHHHHHhhHH
Q psy11002 49 NEDEFIQGVSQFSV-KG-DKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQF--SVKGDKESKLRFAFRIY 124 (195)
Q Consensus 49 ~~~~~~~~F~~~D~-~~-~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~--~~~~~~~~~~~~~F~~~ 124 (195)
....+-.+|++||. +| +|.| +.+||..++... .......+.+..+++.+
T Consensus 8 ~~~~~i~~F~~y~~~~~~~g~I---------------------------s~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~ 60 (88)
T cd05029 8 AIGLLVAIFHKYSGREGDKNTL---------------------------SKKELKELIQKELTIGSKLQDAEIAKLMEDL 60 (88)
T ss_pred HHHHHHHHHHHHHccCCCCCEE---------------------------CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 35678889999998 56 6666 466777777531 23445667999999999
Q ss_pred cCCCCCeeeHHHHHHHHHH
Q psy11002 125 DMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 125 D~d~~G~Is~~el~~~l~~ 143 (195)
|.|++|.|+.+||..++..
T Consensus 61 D~d~dG~Idf~EFv~lm~~ 79 (88)
T cd05029 61 DRNKDQEVNFQEYVTFLGA 79 (88)
T ss_pred cCCCCCCCcHHHHHHHHHH
Confidence 9999999999999988876
No 72
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.89 E-value=8.2e-05 Score=44.06 Aligned_cols=50 Identities=26% Similarity=0.364 Sum_probs=40.4
Q ss_pred eeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 131 FISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 131 ~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
+++.+|++.+|+. ++..+++..+..+++. +|.+++|.+..+||.+++...
T Consensus 1 kmsf~Evk~lLk~-~NI~~~~~yA~~LFq~----~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKM-MNIEMDDEYARQLFQE----CDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHH-TT----HHHHHHHHHH----H-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HccCcCHHHHHHHHHH----hcccCCCCccHHHHHHHHHHh
Confidence 4789999999998 7999999999888888 999999999999999988753
No 73
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=97.88 E-value=7.7e-05 Score=50.00 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=52.8
Q ss_pred CHHHHHHHHhh-cCcCCCC-CcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcc----cCCchHHHHHHHhh
Q psy11002 49 NEDEFIQGVSQ-FSVKGDK-DIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFS----VKGDKESKLRFAFR 122 (195)
Q Consensus 49 ~~~~~~~~F~~-~D~~~~g-~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~----~~~~~~~~~~~~F~ 122 (195)
.+..+..+|+. +|.+|+| .| +.+||..++.... ........+..+++
T Consensus 7 ~i~~l~~~F~~y~~~dg~~~~L---------------------------s~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~ 59 (89)
T cd05023 7 CIESLIAVFQKYAGKDGDSYQL---------------------------SKTEFLSFMNTELASFTKNQKDPGVLDRMMK 59 (89)
T ss_pred HHHHHHHHHHHHhccCCCcCeE---------------------------CHHHHHHHHHHhhhHhhcCCCCHHHHHHHHH
Confidence 46788999999 6777876 65 4667777776542 22344568899999
Q ss_pred HHcCCCCCeeeHHHHHHHHHH
Q psy11002 123 IYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 123 ~~D~d~~G~Is~~el~~~l~~ 143 (195)
.+|.|++|.|+.+||..++..
T Consensus 60 ~~D~d~DG~I~f~EF~~l~~~ 80 (89)
T cd05023 60 KLDLNSDGQLDFQEFLNLIGG 80 (89)
T ss_pred HcCCCCCCcCcHHHHHHHHHH
Confidence 999999999999999998876
No 74
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.85 E-value=8.8e-06 Score=57.03 Aligned_cols=63 Identities=21% Similarity=0.429 Sum_probs=45.1
Q ss_pred chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHH
Q psy11002 112 DKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSV 181 (195)
Q Consensus 112 ~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~ 181 (195)
.....+...|..+|.|+||.|+..|++.+... + ...+.-+..+++. +|.|+||.||..|+..+
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~-l--~~~e~C~~~F~~~----CD~n~d~~Is~~EW~~C 113 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRP-L--MPPEHCARPFFRS----CDVNKDGKISLDEWCNC 113 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGST-T--STTGGGHHHHHHH----H-TT-SSSEEHHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHH-H--hhhHHHHHHHHHH----cCCCCCCCCCHHHHccC
Confidence 44568889999999999999999999887654 2 3445556667766 99999999999999764
No 75
>KOG0751|consensus
Probab=97.84 E-value=2.3e-05 Score=66.73 Aligned_cols=88 Identities=16% Similarity=0.187 Sum_probs=66.9
Q ss_pred CHHHHHHHHhhc---CcCCCCCcCCCCCCCCCC----------C-----cccccccccchhcccccHHHHHHHHhhcccC
Q psy11002 49 NEDEFIQGVSQF---SVKGDKDIDPLSKPAHFP----------S-----IHNVDSTFIYYIILYQFVSEFIQGVSQFSVK 110 (195)
Q Consensus 49 ~~~~~~~~F~~~---D~~~~g~I~~~el~~~~~----------~-----~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~ 110 (195)
+.++++.+|..+ +.++....+++++...+. . -...|...||.| +|+||.++-..+|
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDgli----sf~eF~afe~~lC-- 104 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLI----SFQEFRAFESVLC-- 104 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccc----cHHHHHHHHhhcc--
Confidence 678888888776 456777778887763222 1 134455667766 9999999887765
Q ss_pred CchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHH
Q psy11002 111 GDKESKLRFAFRIYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 111 ~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~ 143 (195)
.+......+|+.||+.++|.++.+++.+++.+
T Consensus 105 -~pDal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 105 -APDALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred -CchHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 33567888999999999999999999999986
No 76
>KOG4065|consensus
Probab=97.70 E-value=0.00022 Score=49.35 Aligned_cols=66 Identities=24% Similarity=0.410 Sum_probs=55.5
Q ss_pred HHHHHhhHHcCCCCCeeeHHHHHHHHHHHh-----CC----CCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHH
Q psy11002 116 KLRFAFRIYDMDNDGFISNGELFQVLKMMV-----GN----NLKDAQLQQIVDKTILFADKDEDGKINFEEFCSV 181 (195)
Q Consensus 116 ~~~~~F~~~D~d~~G~Is~~el~~~l~~~~-----g~----~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~ 181 (195)
.--..|++.|.|++|++.-=|+..+++..- |. -+++.+++.+++.+.+.-|.|+||.|+|.||+..
T Consensus 68 lqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 68 LQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred HhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 334579999999999999999999998621 22 2578899999999999999999999999999864
No 77
>PF14658 EF-hand_9: EF-hand domain
Probab=97.52 E-value=0.00053 Score=43.00 Aligned_cols=61 Identities=15% Similarity=0.264 Sum_probs=47.7
Q ss_pred HHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCC-CeeeH
Q psy11002 56 GVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDND-GFISN 134 (195)
Q Consensus 56 ~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~-G~Is~ 134 (195)
+|..+|.++.|.|. ..+++.++.........+.+++.+.+.+|+++. |.|++
T Consensus 3 ~F~~fD~~~tG~V~---------------------------v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~ 55 (66)
T PF14658_consen 3 AFDAFDTQKTGRVP---------------------------VSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNF 55 (66)
T ss_pred chhhcCCcCCceEe---------------------------HHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeH
Confidence 57778888777764 556666665554436677799999999999998 99999
Q ss_pred HHHHHHHHH
Q psy11002 135 GELFQVLKM 143 (195)
Q Consensus 135 ~el~~~l~~ 143 (195)
+.|..+++.
T Consensus 56 d~F~~iM~~ 64 (66)
T PF14658_consen 56 DTFLAIMRD 64 (66)
T ss_pred HHHHHHHHH
Confidence 999999875
No 78
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.47 E-value=0.00022 Score=36.01 Aligned_cols=21 Identities=48% Similarity=0.667 Sum_probs=18.0
Q ss_pred hhhhCCCCCCceeHHHHHHHH
Q psy11002 162 ILFADKDEDGKINFEEFCSVS 182 (195)
Q Consensus 162 ~~~~d~~~dg~Is~~EF~~~l 182 (195)
|+.+|.|+||.|+.+||.+++
T Consensus 5 F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 5 FQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHcCCCCCcCCHHHHHHHC
Confidence 444999999999999998864
No 79
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=97.46 E-value=0.00054 Score=45.72 Aligned_cols=68 Identities=21% Similarity=0.270 Sum_probs=50.6
Q ss_pred CHHHHHHHHhhcCcCC--CCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccC----CchHHHHHHHhh
Q psy11002 49 NEDEFIQGVSQFSVKG--DKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVK----GDKESKLRFAFR 122 (195)
Q Consensus 49 ~~~~~~~~F~~~D~~~--~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~----~~~~~~~~~~F~ 122 (195)
.+..+...|..|+... +|.| +.+|+..++...... ....+.+..+|+
T Consensus 6 ~i~~~~~~f~~y~~~~~~~~~I---------------------------s~~El~~ll~~~~g~~~t~~~~~~~v~~i~~ 58 (88)
T cd05030 6 AIETIINVFHQYSVRKGHPDTL---------------------------YKKEFKQLVEKELPNFLKKEKNQKAIDKIFE 58 (88)
T ss_pred HHHHHHHHHHHHhccCCCcccC---------------------------CHHHHHHHHHHHhhHhhccCCCHHHHHHHHH
Confidence 4567888999998663 5665 455666666432222 122678999999
Q ss_pred HHcCCCCCeeeHHHHHHHHHH
Q psy11002 123 IYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 123 ~~D~d~~G~Is~~el~~~l~~ 143 (195)
.+|.+++|.|+.+||..++..
T Consensus 59 ~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 59 DLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HcCCCCCCcCcHHHHHHHHHH
Confidence 999999999999999998876
No 80
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.43 E-value=0.00036 Score=59.03 Aligned_cols=54 Identities=20% Similarity=0.230 Sum_probs=42.5
Q ss_pred CHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCC
Q psy11002 49 NEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDN 128 (195)
Q Consensus 49 ~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~ 128 (195)
-...++.+|+.+|.++||.| +.+||+. ...+|..+|.|+
T Consensus 332 ~~~~l~~aF~~~D~dgdG~I---------------------------s~~E~~~--------------~~~~F~~~D~d~ 370 (391)
T PRK12309 332 FTHAAQEIFRLYDLDGDGFI---------------------------TREEWLG--------------SDAVFDALDLNH 370 (391)
T ss_pred hhHHHHHHHHHhCCCCCCcC---------------------------cHHHHHH--------------HHHHHHHhCCCC
Confidence 35566777777777777765 5778742 456899999999
Q ss_pred CCeeeHHHHHHHHHH
Q psy11002 129 DGFISNGELFQVLKM 143 (195)
Q Consensus 129 ~G~Is~~el~~~l~~ 143 (195)
+|.|+.+||..++..
T Consensus 371 DG~Is~eEf~~~~~~ 385 (391)
T PRK12309 371 DGKITPEEMRAGLGA 385 (391)
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999886
No 81
>KOG0040|consensus
Probab=97.34 E-value=0.00088 Score=63.80 Aligned_cols=66 Identities=17% Similarity=0.502 Sum_probs=57.3
Q ss_pred HHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 115 SKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLK-------DAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 115 ~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~-------~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
..+..+|+.||++.+|.++..+|+.+|+. +|..++ +.++++++.. .|++.+|+|+..+|+.+|...
T Consensus 2253 ~EFs~~fkhFDkek~G~Ldhq~F~sCLrs-lgY~lpmvEe~~~~p~fe~~ld~----vDP~r~G~Vsl~dY~afmi~~ 2325 (2399)
T KOG0040|consen 2253 KEFSMMFKHFDKEKNGRLDHQHFKSCLRS-LGYDLPMVEEGEPEPEFEEILDL----VDPNRDGYVSLQDYMAFMISK 2325 (2399)
T ss_pred HHHHHHHHHhchhhccCCcHHHHHHHHHh-cCCCCcccccCCCChhHHHHHHh----cCCCCcCcccHHHHHHHHHhc
Confidence 45677999999999999999999999999 787653 2367778877 999999999999999999865
No 82
>KOG0046|consensus
Probab=97.12 E-value=0.0017 Score=55.93 Aligned_cols=67 Identities=24% Similarity=0.427 Sum_probs=55.1
Q ss_pred hHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCC---CCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 113 KESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNN---LKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 113 ~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~---~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
....++..|...| +++|+|+..++..++.+ .+.. ...+++++++.. .+.|.+|.|++++|+..+...
T Consensus 17 El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k-~~~~~g~~~~eei~~~l~~----~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 17 ELRELKEKFNKLD-DQKGYVTVYELPDAFKK-AKLPLGYFVREEIKEILGE----VGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHHHHhhc-CCCCeeehHHhHHHHHH-hcccccchhHHHHHHHHhc----cCCCcCCccCHHHHHHHHHhh
Confidence 3457888999999 99999999999999998 4543 346677777766 999999999999999976644
No 83
>KOG0040|consensus
Probab=97.10 E-value=0.0023 Score=61.16 Aligned_cols=110 Identities=15% Similarity=0.220 Sum_probs=68.6
Q ss_pred CcccCCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhccc------CCchH
Q psy11002 41 HDLIIVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSV------KGDKE 114 (195)
Q Consensus 41 ~~~~l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~------~~~~~ 114 (195)
...+.+.++..+|.-+|+.||++.+|.++ +.+|...+....- ...++
T Consensus 2243 n~~GVtEe~L~EFs~~fkhFDkek~G~Ld---------------------------hq~F~sCLrslgY~lpmvEe~~~~ 2295 (2399)
T KOG0040|consen 2243 NHNGVTEEQLKEFSMMFKHFDKEKNGRLD---------------------------HQHFKSCLRSLGYDLPMVEEGEPE 2295 (2399)
T ss_pred ccCCCCHHHHHHHHHHHHHhchhhccCCc---------------------------HHHHHHHHHhcCCCCcccccCCCC
Confidence 34445677788899999999999999875 5666665543311 12233
Q ss_pred HHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHH
Q psy11002 115 SKLRFAFRIYDMDNDGFISNGELFQVLKMMVG-NNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVS 182 (195)
Q Consensus 115 ~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g-~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l 182 (195)
..+.......|++.+|+|+..+...++-+.-. .-.+.++++..++. ++. +...|+.++..+.|
T Consensus 2296 p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~Afra----L~a-~~~yvtke~~~~~l 2359 (2399)
T KOG0040|consen 2296 PEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRA----LDA-GKPYVTKEELYQNL 2359 (2399)
T ss_pred hhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHH----hhc-CCccccHHHHHhcC
Confidence 46777777777777777777777766654111 12445566666665 665 45566666554433
No 84
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.10 E-value=0.0021 Score=44.26 Aligned_cols=68 Identities=16% Similarity=0.147 Sum_probs=49.5
Q ss_pred cCCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhH
Q psy11002 44 IIVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRI 123 (195)
Q Consensus 44 ~l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~ 123 (195)
+|++++.+.+..+|..+|+ ++|.|+.. +-..++. ...-..+.+..++.+
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~---------------------------~a~~~f~---~S~L~~~~L~~IW~L 51 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGD---------------------------QAREFFM---KSGLPRDVLAQIWNL 51 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHH---------------------------HHHHHHH---HTTSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHH---------------------------HHHHHHH---HcCCCHHHHHHHHhh
Confidence 3567788999999999985 57877633 3333332 123445799999999
Q ss_pred HcCCCCCeeeHHHHHHHHH
Q psy11002 124 YDMDNDGFISNGELFQVLK 142 (195)
Q Consensus 124 ~D~d~~G~Is~~el~~~l~ 142 (195)
.|.+++|+++.+||.-++.
T Consensus 52 aD~~~dG~L~~~EF~iAm~ 70 (104)
T PF12763_consen 52 ADIDNDGKLDFEEFAIAMH 70 (104)
T ss_dssp H-SSSSSEEEHHHHHHHHH
T ss_pred hcCCCCCcCCHHHHHHHHH
Confidence 9999999999999988776
No 85
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=97.02 E-value=0.0037 Score=40.99 Aligned_cols=69 Identities=19% Similarity=0.364 Sum_probs=53.9
Q ss_pred HHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 116 KLRFAFRIYDMDNDGFISNGELFQVLKMMVGN-NLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 116 ~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~-~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
++..+|..|-. +.+.++.++|++.|...-+. .++.+++..++..+...-.....+.++++.|..+|...
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~ 70 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSD 70 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHST
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCC
Confidence 36789999955 79999999999999874454 57899999999984333333357899999999999755
No 86
>KOG0377|consensus
Probab=97.00 E-value=0.0015 Score=55.22 Aligned_cols=67 Identities=13% Similarity=0.200 Sum_probs=50.9
Q ss_pred HHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHh---hcccCCchHHHHHHHhhHHcC
Q psy11002 50 EDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVS---QFSVKGDKESKLRFAFRIYDM 126 (195)
Q Consensus 50 ~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~---~~~~~~~~~~~~~~~F~~~D~ 126 (195)
...+..+|+.+|.|++|.| +.+||...+. .+++..-..+.+...=+..|-
T Consensus 546 ks~LetiF~~iD~D~SG~i---------------------------sldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~ 598 (631)
T KOG0377|consen 546 KSSLETIFNIIDADNSGEI---------------------------SLDEFRTAWKLLSSHMNGAISDDEILELARSMDL 598 (631)
T ss_pred hhhHHHHHHHhccCCCCce---------------------------eHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhcc
Confidence 4456667777777777766 4666666554 455556667788889999999
Q ss_pred CCCCeeeHHHHHHHHHH
Q psy11002 127 DNDGFISNGELFQVLKM 143 (195)
Q Consensus 127 d~~G~Is~~el~~~l~~ 143 (195)
|+||+|..+||.+++.-
T Consensus 599 NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 599 NKDGKIDLNEFLEAFRL 615 (631)
T ss_pred CCCCcccHHHHHHHHhh
Confidence 99999999999999874
No 87
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.98 E-value=0.0015 Score=34.51 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=19.5
Q ss_pred HhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 161 TILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 161 ~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
+|..+|.|++|.|+.+||..++.+
T Consensus 5 ~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 5 AFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHH
Confidence 344499999999999999999874
No 88
>KOG0041|consensus
Probab=96.85 E-value=0.011 Score=45.04 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=66.9
Q ss_pred CHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCC
Q psy11002 49 NEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDN 128 (195)
Q Consensus 49 ~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~ 128 (195)
+++.+..+|.+||.+.||.| ++.|...+|... ....+.-.++.+.+..|.|.
T Consensus 97 qIk~~~~~Fk~yDe~rDgfI---------------------------dl~ELK~mmEKL-gapQTHL~lK~mikeVded~ 148 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFI---------------------------DLMELKRMMEKL-GAPQTHLGLKNMIKEVDEDF 148 (244)
T ss_pred HHHHHHHHHHHhcccccccc---------------------------cHHHHHHHHHHh-CCchhhHHHHHHHHHhhccc
Confidence 46777788888888888876 577777777665 45555668888899999999
Q ss_pred CCeeeHHHHHHHHHHHhCCCCCH-HHHHHHHHHHhhhhCCCCCCceeHHHHHH
Q psy11002 129 DGFISNGELFQVLKMMVGNNLKD-AQLQQIVDKTILFADKDEDGKINFEEFCS 180 (195)
Q Consensus 129 ~G~Is~~el~~~l~~~~g~~~~~-~~~~~l~~~~~~~~d~~~dg~Is~~EF~~ 180 (195)
+|+|++.||.-++.+...-.+.. .....+.+. ...|....|----..|-+
T Consensus 149 dgklSfreflLIfrkaaagEL~~ds~~~~LAr~--~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 149 DGKLSFREFLLIFRKAAAGELQEDSGLLRLARL--SEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred ccchhHHHHHHHHHHHhccccccchHHHHHHHh--cccchhhhhhhhHHHHHH
Confidence 99999999888877633333333 233222221 225666666444445544
No 89
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=96.84 E-value=0.00064 Score=47.61 Aligned_cols=62 Identities=21% Similarity=0.112 Sum_probs=40.7
Q ss_pred CCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCC
Q psy11002 48 RNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMD 127 (195)
Q Consensus 48 ~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d 127 (195)
.....+...|.++|.|+||.++..|+..+. ..+ ...+..++..|+..|.|
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~------------------------~~l------~~~e~C~~~F~~~CD~n 100 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLR------------------------RPL------MPPEHCARPFFRSCDVN 100 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGG------------------------STT------STTGGGHHHHHHHH-TT
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHH------------------------HHH------hhhHHHHHHHHHHcCCC
Confidence 356788889999999999999988666321 111 12223567788999999
Q ss_pred CCCeeeHHHHHH
Q psy11002 128 NDGFISNGELFQ 139 (195)
Q Consensus 128 ~~G~Is~~el~~ 139 (195)
+||.||..|+..
T Consensus 101 ~d~~Is~~EW~~ 112 (113)
T PF10591_consen 101 KDGKISLDEWCN 112 (113)
T ss_dssp -SSSEEHHHHHH
T ss_pred CCCCCCHHHHcc
Confidence 999999999865
No 90
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.83 E-value=0.0018 Score=32.40 Aligned_cols=27 Identities=44% Similarity=0.658 Sum_probs=24.4
Q ss_pred HHHHhhHHcCCCCCeeeHHHHHHHHHH
Q psy11002 117 LRFAFRIYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 117 ~~~~F~~~D~d~~G~Is~~el~~~l~~ 143 (195)
++.+|+.+|.+++|.|+.++|..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 567999999999999999999998874
No 91
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.82 E-value=0.01 Score=39.71 Aligned_cols=66 Identities=8% Similarity=0.090 Sum_probs=49.7
Q ss_pred HHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhc----ccCCchHHHHHHHhhHHc
Q psy11002 50 EDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQF----SVKGDKESKLRFAFRIYD 125 (195)
Q Consensus 50 ~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~----~~~~~~~~~~~~~F~~~D 125 (195)
...+..+|..|..+ .+++ +..||..++... .......+.+..+++..|
T Consensus 7 i~~lI~~FhkYaG~-~~tL---------------------------sk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD 58 (91)
T cd05024 7 MEKMMLTFHKFAGE-KNYL---------------------------NRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLD 58 (91)
T ss_pred HHHHHHHHHHHcCC-CCcC---------------------------CHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhC
Confidence 56778889999733 3343 566777776433 234455678999999999
Q ss_pred CCCCCeeeHHHHHHHHHH
Q psy11002 126 MDNDGFISNGELFQVLKM 143 (195)
Q Consensus 126 ~d~~G~Is~~el~~~l~~ 143 (195)
.|+||.|++.||..++..
T Consensus 59 ~n~Dg~vdF~EF~~Lv~~ 76 (91)
T cd05024 59 DCRDGKVGFQSFFSLIAG 76 (91)
T ss_pred CCCCCcCcHHHHHHHHHH
Confidence 999999999999998886
No 92
>KOG0751|consensus
Probab=96.73 E-value=0.0042 Score=53.31 Aligned_cols=97 Identities=23% Similarity=0.232 Sum_probs=68.4
Q ss_pred HHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcc-------cccccccchhc-----ccccHHHHHHHHhhcccCCchHHHH
Q psy11002 50 EDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIH-------NVDSTFIYYII-----LYQFVSEFIQGVSQFSVKGDKESKL 117 (195)
Q Consensus 50 ~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~-------~~d~~~~g~i~-----~~i~f~eF~~~~~~~~~~~~~~~~~ 117 (195)
...+..+|..||+.++|.++.+++..++.... .+|.+...... ..++|.+|.+++.... ++..
T Consensus 107 Dal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~Fg~~~~r~~ny~~f~Q~lh~~~-----~E~~ 181 (694)
T KOG0751|consen 107 DALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLHFGDIRKRHLNYAEFTQFLHEFQ-----LEHA 181 (694)
T ss_pred hHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHHhhhHHHHhccHHHHHHHHHHHH-----HHHH
Confidence 35677889999999999999887775554321 22222211111 4579999999887763 4567
Q ss_pred HHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCH
Q psy11002 118 RFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKD 151 (195)
Q Consensus 118 ~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~ 151 (195)
..+|+..|+.++|.|+.=+++..+....++-+++
T Consensus 182 ~qafr~~d~~~ng~is~Ldfq~imvt~~~h~lt~ 215 (694)
T KOG0751|consen 182 EQAFREKDKAKNGFISVLDFQDIMVTIRIHLLTP 215 (694)
T ss_pred HHHHHHhcccCCCeeeeechHhhhhhhhhhcCCH
Confidence 8899999999999999999999887633443443
No 93
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.52 E-value=0.015 Score=34.46 Aligned_cols=48 Identities=15% Similarity=0.084 Sum_probs=36.5
Q ss_pred ccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHH
Q psy11002 95 QFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 95 i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~ 143 (195)
++|+|...++... +-.-...-+..+|+..|.+++|.+..+||.+....
T Consensus 2 msf~Evk~lLk~~-NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKMM-NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHHT-T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 4788888877766 44555667888999999999999999999988765
No 94
>KOG2562|consensus
Probab=96.21 E-value=0.0057 Score=52.05 Aligned_cols=121 Identities=11% Similarity=0.023 Sum_probs=69.5
Q ss_pred HHHHHHhhcCcCCCCCcCCCCCCCCCC------------------------------CcccccccccchhcccccHHHHH
Q psy11002 52 EFIQGVSQFSVKGDKDIDPLSKPAHFP------------------------------SIHNVDSTFIYYIILYQFVSEFI 101 (195)
Q Consensus 52 ~~~~~F~~~D~~~~g~I~~~el~~~~~------------------------------~~~~~d~~~~g~i~~~i~f~eF~ 101 (195)
.+.++|-..++.+.|+|+..+++...- .+-++|.+.+|.+ +-++..
T Consensus 226 vi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEed~nq~~~~FS~e~f~viy~kFweLD~Dhd~li----dk~~L~ 301 (493)
T KOG2562|consen 226 VIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEEDINQVTRYFSYEHFYVIYCKFWELDTDHDGLI----DKEDLK 301 (493)
T ss_pred HhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHhhhhhhhhheeHHHHHHHHHHHhhhcccccccc----CHHHHH
Confidence 456788888999999998776652221 1234455555444 444432
Q ss_pred HHHhhcccCCchHHHHHHHhh----HHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHH
Q psy11002 102 QGVSQFSVKGDKESKLRFAFR----IYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEE 177 (195)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~F~----~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~E 177 (195)
.+-- .....--+..+|. .+-...+|.++.++|...+-+ .-.+-++..++-+++. +|.+++|.++..|
T Consensus 302 ry~d----~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA-~e~k~t~~SleYwFrc----lDld~~G~Lt~~e 372 (493)
T KOG2562|consen 302 RYGD----HTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILA-EEDKDTPASLEYWFRC----LDLDGDGILTLNE 372 (493)
T ss_pred HHhc----cchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHH-hccCCCccchhhheee----eeccCCCcccHHH
Confidence 2221 1122233455555 233445677777777776665 3334444555555555 8888888888877
Q ss_pred HHHHHHhh
Q psy11002 178 FCSVSTAS 185 (195)
Q Consensus 178 F~~~l~~~ 185 (195)
..-++...
T Consensus 373 l~~fyeeq 380 (493)
T KOG2562|consen 373 LRYFYEEQ 380 (493)
T ss_pred HHHHHHHH
Confidence 66666555
No 95
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.15 E-value=0.0092 Score=29.59 Aligned_cols=22 Identities=55% Similarity=0.774 Sum_probs=19.1
Q ss_pred hhhCCCCCCceeHHHHHHHHHh
Q psy11002 163 LFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 163 ~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
..+|.+++|.|++++|..++..
T Consensus 7 ~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 7 RLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHCCCCCCcEeHHHHHHHHHh
Confidence 3499999999999999998764
No 96
>KOG4578|consensus
Probab=95.36 E-value=0.0087 Score=48.89 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=47.2
Q ss_pred HHHHHhhHHcCCCCCeeeHHHHHH---HHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 116 KLRFAFRIYDMDNDGFISNGELFQ---VLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 116 ~~~~~F~~~D~d~~G~Is~~el~~---~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.+.+.|..+|+|+++.|...|++- ++.+ ..-...-.+.+++. +|.|+|.+||++|+..++...
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k---~s~~rkC~rk~~~y----CDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLK---KSKPRKCSRKFFKY----CDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHh---hccHHHHhhhcchh----cccCCCceecHHHHhhhhccc
Confidence 567789999999999999998654 4443 11223334445554 999999999999999998754
No 97
>KOG0169|consensus
Probab=95.20 E-value=0.084 Score=47.74 Aligned_cols=132 Identities=11% Similarity=0.135 Sum_probs=95.6
Q ss_pred CCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCC-------------CcccccccccchhcccccHHHHHHHHhhcccCC
Q psy11002 45 IVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFP-------------SIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKG 111 (195)
Q Consensus 45 l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~-------------~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~ 111 (195)
.......-+..+|...|++.+|.++..+...++. .+.+.+..+.+.+ ...+|.........
T Consensus 130 ~~~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~----~~~~~~~~~~~~~~-- 203 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKL----EEEEFVKFRKELTK-- 203 (746)
T ss_pred hcchHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhcccee----hHHHHHHHHHhhcc--
Confidence 3344567788999999999999999886653332 2455566666666 88888877765521
Q ss_pred chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 112 DKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVG-NNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 112 ~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g-~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
. ..+...|..+-.+ .++++.++|...+....+ ...+.+.++++++.+-..-...+.+.++.+.|.++|...
T Consensus 204 r--pev~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~ 275 (746)
T KOG0169|consen 204 R--PEVYFLFVQYSHG-KEYLSTDDLLRFLEEEQGEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSP 275 (746)
T ss_pred C--chHHHHHHHHhCC-CCccCHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCc
Confidence 1 2677778777544 899999999999997433 357888899999885343444556779999999998754
No 98
>KOG3555|consensus
Probab=95.11 E-value=0.027 Score=46.36 Aligned_cols=63 Identities=22% Similarity=0.385 Sum_probs=51.8
Q ss_pred HHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 114 ESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 114 ~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
...+.++|..+|.|.+|.++..||+.+-. .-.+.-++.+|+. .|...||.||-+||..++.+.
T Consensus 249 Kds~gWMFnklD~N~Dl~Ld~sEl~~I~l-----dknE~CikpFfns----CD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 249 KDSLGWMFNKLDTNYDLLLDQSELRAIEL-----DKNEACIKPFFNS----CDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred hhhhhhhhhccccccccccCHHHhhhhhc-----cCchhHHHHHHhh----hcccccCccccchhhhhhccC
Confidence 46789999999999999999999987543 2445566666766 999999999999999988743
No 99
>KOG4578|consensus
Probab=95.06 E-value=0.027 Score=46.10 Aligned_cols=67 Identities=16% Similarity=0.040 Sum_probs=43.6
Q ss_pred CCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHH
Q psy11002 73 KPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 73 l~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~ 143 (195)
-+.+-..+..+|.|.++.++ .=++.-|..++..+ .......+..|+..|.|+|.+|+.+|++..|..
T Consensus 332 eRvv~w~F~qLdkN~nn~i~-rrEwKpFK~~l~k~---s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~ 398 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIE-RREWKPFKRVLLKK---SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGV 398 (421)
T ss_pred hheeeeeeeeecccccCccc-hhhcchHHHHHHhh---ccHHHHhhhcchhcccCCCceecHHHHhhhhcc
Confidence 33344445556666555541 00233344444333 345678899999999999999999999999875
No 100
>PLN02952 phosphoinositide phospholipase C
Probab=94.93 E-value=0.3 Score=43.78 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=63.6
Q ss_pred ccHHHHHHHHhhcc-cCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhhhhCC---CC
Q psy11002 95 QFVSEFIQGVSQFS-VKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGN-NLKDAQLQQIVDKTILFADK---DE 169 (195)
Q Consensus 95 i~f~eF~~~~~~~~-~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~-~~~~~~~~~l~~~~~~~~d~---~~ 169 (195)
++|++|..+...+. .......++..+|..+-.+ .+.++.++|...|...-+. ..+.+.+..++..++..... .+
T Consensus 17 l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~-~~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~~~~ 95 (599)
T PLN02952 17 YNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVG-GGHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVTRYT 95 (599)
T ss_pred cCHHHHHHHHHHhccccCCChHHHHHHHHHHhCC-CCccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhcccccccc
Confidence 49999987766542 2233567999999999644 4689999999999985454 36777788887765433321 23
Q ss_pred CCceeHHHHHHHHHh
Q psy11002 170 DGKINFEEFCSVSTA 184 (195)
Q Consensus 170 dg~Is~~EF~~~l~~ 184 (195)
.+.++++.|..+|..
T Consensus 96 ~~~l~~~~F~~~l~s 110 (599)
T PLN02952 96 RHGLNLDDFFHFLLY 110 (599)
T ss_pred ccCcCHHHHHHHHcC
Confidence 346999999999874
No 101
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=94.38 E-value=0.27 Score=32.88 Aligned_cols=71 Identities=20% Similarity=0.232 Sum_probs=44.3
Q ss_pred HHHHHHHhhHHcCCCCCeeeHHHHHHHHHHH------hCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHH
Q psy11002 114 ESKLRFAFRIYDMDNDGFISNGELFQVLKMM------VGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASII 187 (195)
Q Consensus 114 ~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~------~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~ 187 (195)
.++.+.+|+.+ .|++|.++...|..+|... +|+..+-.-++..++.+|... .....|+-++|+.++...++
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~--~~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQV--QLSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHT--TT-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhccc--CCCCccCHHHHHHHHHhCCC
Confidence 46889999999 6899999999988888752 344433333666666666555 24567999999999998743
No 102
>KOG3866|consensus
Probab=94.00 E-value=0.1 Score=42.59 Aligned_cols=66 Identities=18% Similarity=0.375 Sum_probs=47.6
Q ss_pred HHhhHHcCCCCCeeeHHHHHHHHHHHh----CCCCCHHHH-------HHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 119 FAFRIYDMDNDGFISNGELFQVLKMMV----GNNLKDAQL-------QQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 119 ~~F~~~D~d~~G~Is~~el~~~l~~~~----g~~~~~~~~-------~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
..|.+.|.|++|+++-.||..+++..+ ...-.++.. -.|-..+++..|.|.|..|+.+||++.-.+
T Consensus 248 TFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 248 TFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred hheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 368888999999999999999988622 222122222 223334677799999999999999987553
No 103
>KOG1029|consensus
Probab=93.84 E-value=0.11 Score=47.11 Aligned_cols=67 Identities=28% Similarity=0.389 Sum_probs=55.3
Q ss_pred CCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 110 KGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 110 ~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
.....-+.+.+|+.+|+..+|+++-..-+.+|.. .+ ++...+..|+.. -|.|+||+++-+||+-.|-
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~q-S~--Lpq~~LA~IW~L----sDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQ-SG--LPQNQLAHIWTL----SDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHh-cC--CchhhHhhheee----eccCCCCcccHHHHHHHHH
Confidence 3344567889999999999999999999998875 34 777777777776 9999999999999986543
No 104
>KOG1707|consensus
Probab=93.51 E-value=0.1 Score=46.09 Aligned_cols=129 Identities=16% Similarity=0.042 Sum_probs=78.0
Q ss_pred cCCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCC--------------cccccc-cccchhcccccHHHHHHHHhhcc
Q psy11002 44 IIVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPS--------------IHNVDS-TFIYYIILYQFVSEFIQGVSQFS 108 (195)
Q Consensus 44 ~l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~--------------~~~~d~-~~~g~i~~~i~f~eF~~~~~~~~ 108 (195)
.|.+.-...+..+|..-|.|.||.++-.|+...-.. ...++. -.+|.....++..-|+.+...+.
T Consensus 188 elkp~~v~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l~~vk~vv~e~~p~gv~~~~ltl~GFLfL~~lfi 267 (625)
T KOG1707|consen 188 ELKPRCVKALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQELEDVKNVVQEICPDGVYERGLTLPGFLFLNTLFI 267 (625)
T ss_pred cccHHHHHHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHHHHHHHHHHhhcCchhhhccccccchHHHHHHHH
Confidence 344445778899999999999999998877732221 001111 11222222334444554433211
Q ss_pred c-----------------------------------------CCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCC
Q psy11002 109 V-----------------------------------------KGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGN 147 (195)
Q Consensus 109 ~-----------------------------------------~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~ 147 (195)
. ...--+.+..+|..||.|+||-++..|+..++.. ...
T Consensus 268 ergr~EttW~iLR~fgY~DsleL~~~~l~p~~~~~p~~s~ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~-~P~ 346 (625)
T KOG1707|consen 268 ERGRHETTWTILRKFGYTDSLELTDEYLPPRLKVPPDQSVELSPKGYRFLVDVFEKFDRDNDGALSPEELKDLFST-APG 346 (625)
T ss_pred HhccccchhhhhhhcCCcchhhhhhhhcCccccCCCCcceeccHHHHHHHHHHHHhccCCCCCCcCHHHHHHHhhh-CCC
Confidence 0 0011246788999999999999999999999997 432
Q ss_pred CC----CHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 148 NL----KDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 148 ~~----~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
.. ..++ . --.+..|.++++-|+..+.
T Consensus 347 ~pW~~~~~~~------~----t~~~~~G~ltl~g~l~~Ws 376 (625)
T KOG1707|consen 347 SPWTSSPYKD------S----TVKNERGWLTLNGFLSQWS 376 (625)
T ss_pred CCCCCCcccc------c----ceecccceeehhhHHHHHH
Confidence 22 1111 1 1224678999999887654
No 105
>KOG2243|consensus
Probab=92.87 E-value=0.19 Score=48.54 Aligned_cols=58 Identities=21% Similarity=0.473 Sum_probs=50.1
Q ss_pred HhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 120 AFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 120 ~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
-|+.||+|+.|-|+..+|.+++.. ....++.+++-++.. ...|.+...+|++|+..+.
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~--~k~ytqse~dfllsc----ae~dend~~~y~dfv~rfh 4119 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG--HKHYTQSEIDFLLSC----AEADENDMFDYEDFVDRFH 4119 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc--cccchhHHHHHHHHh----hccCccccccHHHHHHHhc
Confidence 589999999999999999999985 556788898888887 7778888999999998654
No 106
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=92.11 E-value=1.7 Score=31.97 Aligned_cols=67 Identities=16% Similarity=0.276 Sum_probs=46.4
Q ss_pred HHHhhHH---cCCCCCeeeHHHHHHHHHH--HhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHh
Q psy11002 118 RFAFRIY---DMDNDGFISNGELFQVLKM--MVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIIT 188 (195)
Q Consensus 118 ~~~F~~~---D~d~~G~Is~~el~~~l~~--~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~ 188 (195)
+.+|..| -..+...++...|..+++. +++..++...++-++.. +-..+...|+|++|.++|.....+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~K----vk~k~~~~I~f~~F~~aL~~lA~~ 73 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSK----VKAKGARKITFEQFLEALAELAEK 73 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHH----HT-SS-SEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHH----hhcCCCcccCHHHHHHHHHHHHHH
Confidence 3445554 4566778999999999998 22345788888777776 666666789999999999865443
No 107
>KOG0046|consensus
Probab=91.70 E-value=0.3 Score=42.65 Aligned_cols=30 Identities=7% Similarity=0.111 Sum_probs=23.9
Q ss_pred cCCCCCHHHHHHHHhhcCcCCCCCcCCCCCC
Q psy11002 44 IIVVRNEDEFIQGVSQFSVKGDKDIDPLSKP 74 (195)
Q Consensus 44 ~l~~~~~~~~~~~F~~~D~~~~g~I~~~el~ 74 (195)
.++.++..++++.|...| +++|.|+..++.
T Consensus 12 ~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~ 41 (627)
T KOG0046|consen 12 QLTQEELRELKEKFNKLD-DQKGYVTVYELP 41 (627)
T ss_pred cccHHHHHHHHHHHHhhc-CCCCeeehHHhH
Confidence 456667888999999999 999998866444
No 108
>KOG1955|consensus
Probab=91.48 E-value=0.49 Score=41.11 Aligned_cols=64 Identities=27% Similarity=0.424 Sum_probs=54.6
Q ss_pred hHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 113 KESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 113 ~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
..+-..+.|+..-.|-.|+|+-.--++++.+ .+++-+|+..|++. .|.+.||-+++.||+..+-
T Consensus 229 QReYYvnQFrtvQpDp~gfisGsaAknFFtK---Sklpi~ELshIWeL----sD~d~DGALtL~EFcAAfH 292 (737)
T KOG1955|consen 229 QREYYVNQFRTVQPDPHGFISGSAAKNFFTK---SKLPIEELSHIWEL----SDVDRDGALTLSEFCAAFH 292 (737)
T ss_pred HHHHHHhhhhcccCCcccccccHHHHhhhhh---ccCchHHHHHHHhh----cccCccccccHHHHHhhHh
Confidence 3456778899999999999999988888876 34777888888877 9999999999999999874
No 109
>KOG4666|consensus
Probab=91.32 E-value=0.41 Score=39.45 Aligned_cols=67 Identities=18% Similarity=0.214 Sum_probs=54.3
Q ss_pred HHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 114 ESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 114 ~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
.+.+...|.+||.+++|.++..|-...+.-++|...+.+.++-.++. ++.+.||.+.-.+|.-.++.
T Consensus 258 sd~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~----f~v~eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 258 SDKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKR----FSVAEDGISGEHILSLILQV 324 (412)
T ss_pred hhhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHh----cccccccccchHHHHHHHHH
Confidence 36788899999999999999999888887666777777766666665 99999999988777666553
No 110
>KOG4347|consensus
Probab=90.56 E-value=0.61 Score=41.67 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=52.5
Q ss_pred ccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCcee
Q psy11002 95 QFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKIN 174 (195)
Q Consensus 95 i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is 174 (195)
|+|..|...+....+-.....-+..+|+.+|.+++|.+++.+|...|..+... ++.+-++.+|+-+|++++ ..+
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~-----~~~ek~~l~y~lh~~p~~-~~d 608 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAG-----DALEKLKLLYKLHDPPAD-ELD 608 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhh-----hHHHHHHHHHhhccCCcc-ccc
Confidence 36777777666553333344567889999999999999999999999874221 222333444555888887 666
Q ss_pred HHH
Q psy11002 175 FEE 177 (195)
Q Consensus 175 ~~E 177 (195)
.++
T Consensus 609 ~e~ 611 (671)
T KOG4347|consen 609 REE 611 (671)
T ss_pred ccc
Confidence 554
No 111
>KOG0035|consensus
Probab=90.55 E-value=0.91 Score=42.27 Aligned_cols=71 Identities=20% Similarity=0.102 Sum_probs=57.5
Q ss_pred HHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCH-HHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 114 ESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKD-AQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 114 ~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~-~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.+.++..|+.+|+...|..+.+++..++.. +|....+ +...+-+..+....|++.-|++++.+|...|.+.
T Consensus 746 ~~ElrAle~~~~~~d~~aa~~e~~~~~Lms-lg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~ 817 (890)
T KOG0035|consen 746 LDELRALENEQDKIDGGAASPEELLRCLMS-LGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLERE 817 (890)
T ss_pred HHHHHHHHhHHHHhhcccCCHHHHHHHHHh-cCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhh
Confidence 467899999999999999999999999998 7877664 3444444445555888888999999999988765
No 112
>KOG0042|consensus
Probab=90.32 E-value=0.58 Score=41.37 Aligned_cols=66 Identities=20% Similarity=0.382 Sum_probs=57.3
Q ss_pred HHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 115 SKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 115 ~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
...+.-|..+|.|+.|+++.+++.+++.. .+.+.+++...+++++ .|.+-+|.+...||.+++...
T Consensus 593 ~~~~~rf~~lD~~k~~~~~i~~v~~vlk~-~~~~~d~~~~~~~l~e----a~~~~~g~v~l~e~~q~~s~~ 658 (680)
T KOG0042|consen 593 LRRKTRFAFLDADKKAYQAIADVLKVLKS-ENVGWDEDRLHEELQE----ADENLNGFVELREFLQLMSAI 658 (680)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHH----HHHhhcceeeHHHHHHHHHHH
Confidence 34567899999999999999999999999 5778899888888887 888889999999999987643
No 113
>KOG0169|consensus
Probab=90.27 E-value=1 Score=41.06 Aligned_cols=70 Identities=21% Similarity=0.412 Sum_probs=58.6
Q ss_pred CchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 111 GDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 111 ~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.....++..+|+..|++++|.++..+...++.. +...++...+..++++ .+..+++++...+|.++....
T Consensus 132 ~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~-~n~~l~~~~~~~~f~e----~~~~~~~k~~~~~~~~~~~~~ 201 (746)
T KOG0169|consen 132 SRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQ-LNVQLSESKARRLFKE----SDNSQTGKLEEEEFVKFRKEL 201 (746)
T ss_pred chHHHHHHHHHHHHccccccccchhhHHHHHHH-HHHhhhHHHHHHHHHH----HHhhccceehHHHHHHHHHhh
Confidence 444567888999999999999999999999998 6777888888888877 677788999999888876643
No 114
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=88.08 E-value=1.9 Score=27.94 Aligned_cols=48 Identities=10% Similarity=0.079 Sum_probs=35.0
Q ss_pred cHHHHHHHHhhcccC-CchHHHHHHHhhHHcCC----CCCeeeHHHHHHHHHH
Q psy11002 96 FVSEFIQGVSQFSVK-GDKESKLRFAFRIYDMD----NDGFISNGELFQVLKM 143 (195)
Q Consensus 96 ~f~eF~~~~~~~~~~-~~~~~~~~~~F~~~D~d----~~G~Is~~el~~~l~~ 143 (195)
+.++|...+...... ....+.+..++..|.++ ..+.++.++|...|.+
T Consensus 17 t~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 17 TAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp EHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred CHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 667777777655333 23567888888888654 4799999999999964
No 115
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=87.38 E-value=4 Score=30.63 Aligned_cols=65 Identities=18% Similarity=0.328 Sum_probs=48.8
Q ss_pred HHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCC-----------------------------------------------
Q psy11002 116 KLRFAFRIYDMDNDGFISNGELFQVLKMMVGNN----------------------------------------------- 148 (195)
Q Consensus 116 ~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~----------------------------------------------- 148 (195)
.++.-...||+|+||.|.+-|--..+.. +|..
T Consensus 8 ~LQqHvaFFDrd~DGiI~P~dTy~GFra-LGf~~~~s~~aa~~I~~~lSy~T~~~w~p~P~f~Iyi~nIhk~kHGSDSg~ 86 (174)
T PF05042_consen 8 VLQQHVAFFDRDKDGIIYPWDTYQGFRA-LGFGILLSLLAAFIIHGALSYPTQPSWIPDPFFRIYIKNIHKGKHGSDSGA 86 (174)
T ss_pred HHhhhhceeCCCCCeeECHHHHHHHHHH-hCCCHHHHHHHHHHHHcccCCccCCCCCCCCceeEEeecccccccCCCccc
Confidence 4556667799999999999997766665 4521
Q ss_pred ------CCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 149 ------LKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 149 ------~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
..++..++++.. ++..+.+.+++.|..+++..+
T Consensus 87 YD~eGrFvp~kFe~iF~k----ya~~~~d~LT~~E~~~m~~~n 125 (174)
T PF05042_consen 87 YDTEGRFVPQKFEEIFSK----YAKTGPDALTLRELWRMLKGN 125 (174)
T ss_pred cccCCcCCHHHHHHHHHH----hCCCCCCCcCHHHHHHHHHhc
Confidence 114556666666 888888899999999999875
No 116
>KOG0038|consensus
Probab=87.27 E-value=1.3 Score=32.42 Aligned_cols=81 Identities=12% Similarity=0.144 Sum_probs=53.1
Q ss_pred cHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeH
Q psy11002 96 FVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINF 175 (195)
Q Consensus 96 ~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~ 175 (195)
.++...+ |... ....-..++..+|. .||.|.++.++|...++. +....+. ++ -....|+-+|-|+|+.|--
T Consensus 57 p~e~i~k-MPEL-kenpfk~ri~e~FS---eDG~GnlsfddFlDmfSV-~sE~APr-dl--K~~YAFkIYDfd~D~~i~~ 127 (189)
T KOG0038|consen 57 PFELIEK-MPEL-KENPFKRRICEVFS---EDGRGNLSFDDFLDMFSV-FSEMAPR-DL--KAKYAFKIYDFDGDEFIGH 127 (189)
T ss_pred cHHHHhh-Chhh-hcChHHHHHHHHhc---cCCCCcccHHHHHHHHHH-HHhhChH-Hh--hhhheeEEeecCCCCcccH
Confidence 6664333 3222 23444555655555 699999999999999987 4443332 22 2334466699999999988
Q ss_pred HHHHHHHHhh
Q psy11002 176 EEFCSVSTAS 185 (195)
Q Consensus 176 ~EF~~~l~~~ 185 (195)
+.....+++.
T Consensus 128 ~DL~~~l~~l 137 (189)
T KOG0038|consen 128 DDLEKTLTSL 137 (189)
T ss_pred HHHHHHHHHH
Confidence 8888777654
No 117
>KOG3555|consensus
Probab=86.20 E-value=1.8 Score=35.97 Aligned_cols=98 Identities=15% Similarity=0.114 Sum_probs=69.3
Q ss_pred HHHHHHHhhcCcCCCCCcCCCCCCCC--------C--------CCcccccccccchhcccccHHHHHHHHhhcccCCchH
Q psy11002 51 DEFIQGVSQFSVKGDKDIDPLSKPAH--------F--------PSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKE 114 (195)
Q Consensus 51 ~~~~~~F~~~D~~~~g~I~~~el~~~--------~--------~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~ 114 (195)
.+++..|..+-.++++......+... . .++..+|.|.++.+ +..|...+-.. ..+
T Consensus 211 ~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~CKds~gWMFnklD~N~Dl~L----d~sEl~~I~ld-----knE 281 (434)
T KOG3555|consen 211 NRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPICKDSLGWMFNKLDTNYDLLL----DQSELRAIELD-----KNE 281 (434)
T ss_pred HHHHHHHHHHHhhhhccCcchhhcccccccccccCcchhhhhhhhhhcccccccccc----CHHHhhhhhcc-----Cch
Confidence 35677788876666655554433322 1 14789999999988 88886665543 345
Q ss_pred HHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHH
Q psy11002 115 SKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVD 159 (195)
Q Consensus 115 ~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~ 159 (195)
..++..|...|...+|.|+.+|+...+.. .+ .+-..+...+-.
T Consensus 282 ~CikpFfnsCD~~kDg~iS~~EWC~CF~k-~~-~pc~~e~~riqk 324 (434)
T KOG3555|consen 282 ACIKPFFNSCDTYKDGSISTNEWCYCFQK-SD-PPCQAELCRIQK 324 (434)
T ss_pred hHHHHHHhhhcccccCccccchhhhhhcc-CC-CccccHHHHHHh
Confidence 68899999999999999999999999986 34 454555544444
No 118
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=84.35 E-value=8.4 Score=26.17 Aligned_cols=65 Identities=11% Similarity=0.085 Sum_probs=43.8
Q ss_pred HHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHH
Q psy11002 116 KLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASII 187 (195)
Q Consensus 116 ~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~ 187 (195)
.+..=|..+-. +|.+..+.|.+++ |..-+.+-+.+++..+-+.-... ...|+.+|...++.....
T Consensus 31 ~VE~RFd~La~--dG~L~rs~Fg~CI----GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~qisD 95 (100)
T PF08414_consen 31 EVEKRFDKLAK--DGLLPRSDFGECI----GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQISD 95 (100)
T ss_dssp HHHHHHHHH-B--TTBEEGGGHHHHH----T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHHHH-
T ss_pred HHHHHHHHhCc--CCcccHHHHHHhc----CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHHhhc
Confidence 44445666554 9999999999887 44456777888888887777766 557999999988776533
No 119
>KOG4347|consensus
Probab=83.70 E-value=1.2 Score=39.88 Aligned_cols=60 Identities=15% Similarity=0.176 Sum_probs=50.1
Q ss_pred CHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCC
Q psy11002 49 NEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDN 128 (195)
Q Consensus 49 ~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~ 128 (195)
+..-+..+|..+|.+++|.+ +|.+++..+... ......+.++..|+++|.++
T Consensus 553 s~~~~~rlF~l~D~s~~g~L---------------------------tf~~lv~gL~~l-~~~~~~ek~~l~y~lh~~p~ 604 (671)
T KOG4347|consen 553 SLIFLERLFRLLDDSMTGLL---------------------------TFKDLVSGLSIL-KAGDALEKLKLLYKLHDPPA 604 (671)
T ss_pred HHHHHHHHHHhcccCCccee---------------------------EHHHHHHHHHHH-HhhhHHHHHHHHHhhccCCc
Confidence 45567788888888888765 799999999887 46666789999999999999
Q ss_pred CCeeeHHHH
Q psy11002 129 DGFISNGEL 137 (195)
Q Consensus 129 ~G~Is~~el 137 (195)
+ ....++.
T Consensus 605 ~-~~d~e~~ 612 (671)
T KOG4347|consen 605 D-ELDREEV 612 (671)
T ss_pred c-ccccccc
Confidence 9 8888888
No 120
>KOG0998|consensus
Probab=83.54 E-value=1.3 Score=41.65 Aligned_cols=63 Identities=27% Similarity=0.315 Sum_probs=51.1
Q ss_pred HHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 115 SKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 115 ~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
..+..+|...|.+.+|.|+..+....+.. ..++...+..++.. .|..+.|.+++.+|.-.+-.
T Consensus 283 ~~~~~if~q~d~~~dG~I~s~~~~~~f~~---~gl~~~~l~~~w~l----~d~~n~~~ls~~ef~~~~~~ 345 (847)
T KOG0998|consen 283 QKYSKIFSQVDKDNDGSISSNEARNIFLP---FGLSKPRLAHVWLL----ADTQNTGTLSKDEFALAMHL 345 (847)
T ss_pred HHHHHHHHhccccCCCccccccccccccc---CCCChhhhhhhhhh----cchhccCcccccccchhhhh
Confidence 44566899999999999999999998865 44777777777766 99999999999988765543
No 121
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=83.50 E-value=1.5 Score=27.79 Aligned_cols=30 Identities=20% Similarity=0.387 Sum_probs=25.2
Q ss_pred chHHHHHHHhhHHcCCCCCeeeHHHHHHHHH
Q psy11002 112 DKESKLRFAFRIYDMDNDGFISNGELFQVLK 142 (195)
Q Consensus 112 ~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~ 142 (195)
...+.+..+|+.+ .++.++||.+||++.|.
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l~ 32 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSLT 32 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS-
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHcC
Confidence 3457899999999 78899999999998775
No 122
>KOG1955|consensus
Probab=82.53 E-value=1.8 Score=37.71 Aligned_cols=31 Identities=19% Similarity=0.410 Sum_probs=27.5
Q ss_pred hHHHHHHHhhHHcCCCCCeeeHHHHHHHHHH
Q psy11002 113 KESKLRFAFRIYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 113 ~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~ 143 (195)
..+++..++++.|.|.||.++.+||..++.-
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHhhHhh
Confidence 3468999999999999999999999998763
No 123
>KOG4065|consensus
Probab=79.74 E-value=0.31 Score=34.00 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=35.5
Q ss_pred CHHHHH-HHHhhcCcCCCCCcCCCCCCCCC--------------CC-------------cccccccccchhcccccHHHH
Q psy11002 49 NEDEFI-QGVSQFSVKGDKDIDPLSKPAHF--------------PS-------------IHNVDSTFIYYIILYQFVSEF 100 (195)
Q Consensus 49 ~~~~~~-~~F~~~D~~~~g~I~~~el~~~~--------------~~-------------~~~~d~~~~g~i~~~i~f~eF 100 (195)
+.++++ ..|+..|.|+++.++.-|+.... |. ++.-|.|++|.| +|.||
T Consensus 64 tpeqlqfHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~I----DYgEf 139 (144)
T KOG4065|consen 64 TPEQLQFHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVI----DYGEF 139 (144)
T ss_pred CHHHHhhhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCcee----eHHHH
Confidence 344444 56888999999998876655221 11 456677888887 99999
Q ss_pred HHH
Q psy11002 101 IQG 103 (195)
Q Consensus 101 ~~~ 103 (195)
++.
T Consensus 140 lK~ 142 (144)
T KOG4065|consen 140 LKR 142 (144)
T ss_pred Hhh
Confidence 874
No 124
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=78.85 E-value=14 Score=27.81 Aligned_cols=66 Identities=17% Similarity=0.224 Sum_probs=45.8
Q ss_pred CHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchH------HHHHHHhh
Q psy11002 49 NEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKE------SKLRFAFR 122 (195)
Q Consensus 49 ~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~------~~~~~~F~ 122 (195)
..+.+.++|..++..+.+.+ ++.|...++.......+.. -++...|.
T Consensus 94 vp~kFe~iF~kya~~~~d~L---------------------------T~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~ 146 (174)
T PF05042_consen 94 VPQKFEEIFSKYAKTGPDAL---------------------------TLRELWRMLKGNRNANDPFGWFAAFFEWGALYI 146 (174)
T ss_pred CHHHHHHHHHHhCCCCCCCc---------------------------CHHHHHHHHHhccccCCcchhhhhhhHHHHHHH
Confidence 68899999999988755444 6778887777654333322 23444555
Q ss_pred HHcCCCCCeeeHHHHHHHHH
Q psy11002 123 IYDMDNDGFISNGELFQVLK 142 (195)
Q Consensus 123 ~~D~d~~G~Is~~el~~~l~ 142 (195)
+. .+.+|.+.+|.++.+.-
T Consensus 147 L~-~d~dG~l~Ke~iR~vYD 165 (174)
T PF05042_consen 147 LA-KDKDGFLSKEDIRGVYD 165 (174)
T ss_pred HH-cCcCCcEeHHHHhhhcc
Confidence 44 56899999999988764
No 125
>KOG1265|consensus
Probab=78.35 E-value=9.3 Score=35.94 Aligned_cols=85 Identities=13% Similarity=0.231 Sum_probs=64.4
Q ss_pred cHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHh---------CCCCCHHHHHHHHHHHhhhhC
Q psy11002 96 FVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMV---------GNNLKDAQLQQIVDKTILFAD 166 (195)
Q Consensus 96 ~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~---------g~~~~~~~~~~l~~~~~~~~d 166 (195)
+++.|..++..++ ...++..+|..+-.+..-++|.++|..++.+.. -...++..+..+++.+--.-+
T Consensus 206 ~~e~f~~~l~klc----pR~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~liekyEp~~~ 281 (1189)
T KOG1265|consen 206 TLEKFYRLLNKLC----PRPEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLIEKYEPNSD 281 (1189)
T ss_pred cHHHHHHHHHhcC----CchhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHHHHcCCchh
Confidence 6777888777764 235788899999888889999999999998621 134678889999998322223
Q ss_pred CCCCCceeHHHHHHHHHh
Q psy11002 167 KDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 167 ~~~dg~Is~~EF~~~l~~ 184 (195)
.-..|+++-+-|+.++..
T Consensus 282 ~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 282 NAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred hhhccccchhhhHHHhhC
Confidence 334799999999999886
No 126
>KOG0039|consensus
Probab=76.56 E-value=7.6 Score=35.47 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=59.9
Q ss_pred ccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHh--CC-CCCHHHHHHHHHHHhhhhCCCCCC
Q psy11002 95 QFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMV--GN-NLKDAQLQQIVDKTILFADKDEDG 171 (195)
Q Consensus 95 i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~--g~-~~~~~~~~~l~~~~~~~~d~~~dg 171 (195)
++++||. ....+.+++++..|..+|. .+|.++.+++..++.... +. ....+...++...++.+.|.++.|
T Consensus 4 ~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (646)
T KOG0039|consen 4 ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPDHKG 76 (646)
T ss_pred cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhccccccc
Confidence 4888888 2456778899999999998 999999999999888622 21 122233344444455569999999
Q ss_pred ceeHHHHHHHHHhh
Q psy11002 172 KINFEEFCSVSTAS 185 (195)
Q Consensus 172 ~Is~~EF~~~l~~~ 185 (195)
.+.+..+..++...
T Consensus 77 y~~~~~~~~ll~~~ 90 (646)
T KOG0039|consen 77 YITNEDLEILLLQI 90 (646)
T ss_pred eeeecchhHHHHhc
Confidence 88877777666644
No 127
>KOG4070|consensus
Probab=74.68 E-value=5 Score=29.43 Aligned_cols=92 Identities=12% Similarity=0.099 Sum_probs=51.4
Q ss_pred HHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCC
Q psy11002 50 EDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDND 129 (195)
Q Consensus 50 ~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~ 129 (195)
...+.+.|+.|..-||-.-+..|+.+- +|..++.-+...-...-+.-..-.+|..+-...-
T Consensus 11 ~a~~~~~f~~Fa~fGd~~asg~em~gk-------------------n~~KlcKdc~V~DgK~vT~tdt~i~fsKvkg~~~ 71 (180)
T KOG4070|consen 11 MAGLEESFRAFAKFGDSKASGTEMNGK-------------------NWDKLCKDCKVIDGKSVTGTDTDIVFSKVKGKKA 71 (180)
T ss_pred hhhHHHHHHHHHHcCCccccccccccc-------------------cHHHHHhhcCcccCCcccccccceeeeecccccc
Confidence 456677777776666544443332211 4555555444432223333345557777666677
Q ss_pred CeeeHHHHHHHHHHHh----CCCCCHHHHHHHHHH
Q psy11002 130 GFISNGELFQVLKMMV----GNNLKDAQLQQIVDK 160 (195)
Q Consensus 130 G~Is~~el~~~l~~~~----g~~~~~~~~~~l~~~ 160 (195)
+.+++++++++|..+. .....+++++++.+.
T Consensus 72 ~~~tf~~fkkal~ela~~R~k~Ks~ee~l~~I~~l 106 (180)
T KOG4070|consen 72 RTITFEEFKKALEELATKRFKGKSKEEALDAICQL 106 (180)
T ss_pred ccccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH
Confidence 8899999988888632 123445555555443
No 128
>KOG0035|consensus
Probab=73.67 E-value=1.3 Score=41.20 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=65.0
Q ss_pred CCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCC------------------cccccccccchhcccccHHHHHHHHhhcc
Q psy11002 47 VRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPS------------------IHNVDSTFIYYIILYQFVSEFIQGVSQFS 108 (195)
Q Consensus 47 ~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~------------------~~~~d~~~~g~i~~~i~f~eF~~~~~~~~ 108 (195)
+...++++.+|+.++....|..+++++..++.. +...|.+.-| .++|.+|...|....
T Consensus 743 Q~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~----qv~~~e~~ddl~R~~ 818 (890)
T KOG0035|consen 743 QYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQG----QVQLLEFEDDLEREY 818 (890)
T ss_pred HHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCccccc----ceeHHHHHhHhhhhh
Confidence 345789999999999998898988877744332 2333333333 449999999888776
Q ss_pred cCCchHHHHHHHhhHHcCCCCCeeeHHHHHH
Q psy11002 109 VKGDKESKLRFAFRIYDMDNDGFISNGELFQ 139 (195)
Q Consensus 109 ~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~ 139 (195)
...+...++..+|+.+-++.. ++..+||..
T Consensus 819 e~l~~~~r~i~s~~d~~ktk~-~lL~eEL~~ 848 (890)
T KOG0035|consen 819 EDLDTELRAILAFEDWAKTKA-YLLLEELVR 848 (890)
T ss_pred hhhcHHHHHHHHHHHHHcchh-HHHHHHHHh
Confidence 666777888899998876655 788888876
No 129
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=73.14 E-value=11 Score=25.85 Aligned_cols=55 Identities=15% Similarity=0.396 Sum_probs=34.3
Q ss_pred hHHcCCCCCeeeHHHHHHHHHH---------HhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHH
Q psy11002 122 RIYDMDNDGFISNGELFQVLKM---------MVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCS 180 (195)
Q Consensus 122 ~~~D~d~~G~Is~~el~~~l~~---------~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~ 180 (195)
++||...+-+||.+++++++.. ..|..++...+-+++-+ ...++...++-+=..+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~~iL~QII~E----~E~~g~~~lp~~~L~q 73 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTRSILLQIIAE----EESGGEPVLSTDFLTQ 73 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHHHHHHHHHHH----HHhCCCCCCCHHHHHH
Confidence 4689999999999999998884 01233444444444443 5555665565543333
No 130
>PLN02230 phosphoinositide phospholipase C 4
Probab=72.06 E-value=24 Score=31.92 Aligned_cols=72 Identities=14% Similarity=0.184 Sum_probs=52.4
Q ss_pred chHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCC--CCCHHHHHHHHHHHhhhhCC---CCCCceeHHHHHHHHHh
Q psy11002 112 DKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGN--NLKDAQLQQIVDKTILFADK---DEDGKINFEEFCSVSTA 184 (195)
Q Consensus 112 ~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~--~~~~~~~~~l~~~~~~~~d~---~~dg~Is~~EF~~~l~~ 184 (195)
....++..+|..|-.++ +.++.++|.+.|...-+. ..+.+.++.++..+...... -+.+.++.+.|..+|..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEEGGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 34578999999996444 899999999999984322 34677788888765443321 23456999999998875
No 131
>KOG1029|consensus
Probab=70.14 E-value=23 Score=32.93 Aligned_cols=59 Identities=24% Similarity=0.337 Sum_probs=45.1
Q ss_pred HHhhHHc--CCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 119 FAFRIYD--MDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 119 ~~F~~~D--~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
+-+..|+ +-+.|+|+-+.-+.++-. .| ++.-.+.+|+.. .|.|+||+++..||.-.|.-
T Consensus 17 K~~~qF~~Lkp~~gfitg~qArnfflq-S~--LP~~VLaqIWAL----sDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 17 KHDAQFGQLKPGQGFITGDQARNFFLQ-SG--LPTPVLAQIWAL----SDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred HHHHHHhccCCCCCccchHhhhhhHHh-cC--CChHHHHHHHHh----hhcCccccchHHHHHHHHHH
Confidence 3444444 357999999999998865 34 666666666665 99999999999999887763
No 132
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=69.04 E-value=4.6 Score=28.26 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=21.9
Q ss_pred CCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 149 LKDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 149 ~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
+++++.+.+..+ +-.|..|.+.|.||+.-+.
T Consensus 4 LtDeQFdrLW~e----~Pvn~~GrLkY~eFL~kfs 34 (118)
T PF08976_consen 4 LTDEQFDRLWNE----MPVNAKGRLKYQEFLSKFS 34 (118)
T ss_dssp --HHHHHHHHTT----S-B-TTS-EEHHHHHHHT-
T ss_pred ccHHHhhhhhhh----CcCCccCCEeHHHHHHHcc
Confidence 678887777776 9999999999999998776
No 133
>KOG1707|consensus
Probab=68.32 E-value=24 Score=31.72 Aligned_cols=40 Identities=35% Similarity=0.475 Sum_probs=28.4
Q ss_pred HHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHH
Q psy11002 115 SKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQL 154 (195)
Q Consensus 115 ~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~ 154 (195)
..+..+|++.|.|++|.++-.|+-..-..=++.++...++
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF~~pl~p~~l 234 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCFNTPLDPQEL 234 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhcCCCCCHHHH
Confidence 3477799999999999999988876555423444544443
No 134
>PLN02223 phosphoinositide phospholipase C
Probab=68.20 E-value=26 Score=31.25 Aligned_cols=72 Identities=4% Similarity=-0.157 Sum_probs=54.4
Q ss_pred hHHHHHHHhhHHcCCCCCeeeHHHHHHHH---HHHhCC-CCCHHHHHHHHHHHhhhhCC----CCCCceeHHHHHHHHHh
Q psy11002 113 KESKLRFAFRIYDMDNDGFISNGELFQVL---KMMVGN-NLKDAQLQQIVDKTILFADK----DEDGKINFEEFCSVSTA 184 (195)
Q Consensus 113 ~~~~~~~~F~~~D~d~~G~Is~~el~~~l---~~~~g~-~~~~~~~~~l~~~~~~~~d~----~~dg~Is~~EF~~~l~~ 184 (195)
.-+.++.+|..|- ++.|.++.+.|.+.+ ....|. ..+.++++.+++.++..... .+.+.++.+.|..+|..
T Consensus 14 ~p~~v~~~f~~~~-~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~s 92 (537)
T PLN02223 14 QPDLILNFFGNEF-HGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLFS 92 (537)
T ss_pred CcHHHHHHHHHhh-cCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhcC
Confidence 4478999999994 678999999999988 543343 57788889999886654431 23366999999999876
Q ss_pred h
Q psy11002 185 S 185 (195)
Q Consensus 185 ~ 185 (195)
.
T Consensus 93 ~ 93 (537)
T PLN02223 93 T 93 (537)
T ss_pred c
Confidence 3
No 135
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=68.10 E-value=10 Score=23.49 Aligned_cols=22 Identities=23% Similarity=0.614 Sum_probs=19.9
Q ss_pred hHHcCCCCCeeeHHHHHHHHHH
Q psy11002 122 RIYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 122 ~~~D~d~~G~Is~~el~~~l~~ 143 (195)
++||...+.+|+.+++++++..
T Consensus 10 RLYDT~~s~YiTL~di~~lV~~ 31 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVRE 31 (64)
T ss_pred ccccCCCceeEeHHHHHHHHHC
Confidence 4689999999999999999985
No 136
>PLN02228 Phosphoinositide phospholipase C
Probab=68.04 E-value=27 Score=31.39 Aligned_cols=69 Identities=16% Similarity=0.284 Sum_probs=50.7
Q ss_pred CchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhhhhCCC----CCCceeHHHHHHHHHhh
Q psy11002 111 GDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNN-LKDAQLQQIVDKTILFADKD----EDGKINFEEFCSVSTAS 185 (195)
Q Consensus 111 ~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~-~~~~~~~~l~~~~~~~~d~~----~dg~Is~~EF~~~l~~~ 185 (195)
....+++..+|..+-. ++.++.++|...|...-+.. .+.+.+.+++.. +... ..|.++.+.|..+|...
T Consensus 20 ~~~~~ei~~if~~~s~--~~~~t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~----~~~~~~~~~~~~~~~~gF~~yl~s~ 93 (567)
T PLN02228 20 REPPVSIKRLFEAYSR--NGKMSFDELLRFVSEVQGERHAGLDYVQDIFHS----VKHHNVFHHHGLVHLNAFYRYLFSD 93 (567)
T ss_pred CCCcHHHHHHHHHhcC--CCccCHHHHHHHHHHhcCCccCCHHHHHHHHHH----hccchhhcccCccCHHHHHHHhcCc
Confidence 3356789999999864 36899999999999844443 456667777776 4432 34679999999998754
No 137
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=67.47 E-value=5.7 Score=25.17 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=31.7
Q ss_pred eeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 131 FISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 131 ~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.+++..|..++.. .++.+....+... ++.=..++|+.+||++.++.-
T Consensus 8 ~~~F~~L~~~l~~----~l~~~~~~~l~~~----Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 8 WMPFPMLFSALSK----HLPPSKMDLLQKH----YEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred cccHHHHHHHHHH----HCCHHHHHHHHHH----HHHHHHCCCCHHHHHHHHHHH
Confidence 3555555555554 3677777666665 544457899999999988743
No 138
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=66.19 E-value=20 Score=20.34 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=23.2
Q ss_pred HHHHHHHHhhhhCCCC-CCceeHHHHHHHHHhhHHhh
Q psy11002 154 LQQIVDKTILFADKDE-DGKINFEEFCSVSTASIITM 189 (195)
Q Consensus 154 ~~~l~~~~~~~~d~~~-dg~Is~~EF~~~l~~~~~~~ 189 (195)
+..++..+.+....++ ...++..||.+++....+..
T Consensus 5 i~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~Elp~f 41 (44)
T PF01023_consen 5 IETIIDVFHKYAGKEGDKDTLSKKELKELLEKELPNF 41 (44)
T ss_dssp HHHHHHHHHHHHTSSSSTTSEEHHHHHHHHHHHSTTT
T ss_pred HHHHHHHHHHHhccCCCCCeEcHHHHHHHHHHHHHHH
Confidence 3444544444444444 46899999999998775543
No 139
>PLN02222 phosphoinositide phospholipase C 2
Probab=64.11 E-value=29 Score=31.30 Aligned_cols=67 Identities=12% Similarity=0.222 Sum_probs=50.2
Q ss_pred HHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 114 ESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGN-NLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 114 ~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~-~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
..++..+|..+-. ++.++.++|...|...-+. ..+.+.+..++..+ . .....+.++++.|..+|...
T Consensus 24 ~~ei~~if~~~~~--~~~mt~~~l~~FL~~~Q~~~~~~~~~~~~ii~~~-~--~~~~~~~~~~~gF~~yL~s~ 91 (581)
T PLN02222 24 PREIKTIFEKYSE--NGVMTVDHLHRFLIDVQKQDKATREDAQSIINSA-S--SLLHRNGLHLDAFFKYLFGD 91 (581)
T ss_pred cHHHHHHHHHhcC--CCCcCHHHHHHHHHHhcCCccCCHHHHHHHHHhh-h--hhhhccCcCHHHHHHHhcCC
Confidence 4589999999853 4799999999999985454 35777888888872 1 11235679999999999754
No 140
>PF07308 DUF1456: Protein of unknown function (DUF1456); InterPro: IPR009921 This domain occurs in several hypothetical bacterial proteins of around 150 residues in length. The function of this domain is unknown.
Probab=60.87 E-value=39 Score=21.22 Aligned_cols=48 Identities=10% Similarity=0.215 Sum_probs=27.5
Q ss_pred eHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 133 SNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 133 s~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
+-+++.+++.. .|..++..++..+++. -+..+--..+-..+.+++...
T Consensus 15 ~d~~m~~if~l-~~~~vs~~el~a~lrk----e~~~~y~~c~D~~L~~FL~GL 62 (68)
T PF07308_consen 15 KDDDMIEIFAL-AGFEVSKAELSAWLRK----EDEKGYKECSDQLLRNFLNGL 62 (68)
T ss_pred ChHHHHHHHHH-cCCccCHHHHHHHHCC----CCCccccccChHHHHHHHHHH
Confidence 44566777766 6777777777777765 333333344444555555443
No 141
>KOG2871|consensus
Probab=59.67 E-value=8.7 Score=32.44 Aligned_cols=64 Identities=23% Similarity=0.369 Sum_probs=44.9
Q ss_pred HHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHH
Q psy11002 114 ESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSV 181 (195)
Q Consensus 114 ~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~ 181 (195)
.+.++.+|..+|+.++|+|+-.-++.+++. .+..+++...-.+.+. .+|+.+-|.|-.+.|...
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~-~N~~vse~a~v~l~~~---~l~pE~~~iil~~d~lg~ 371 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTA-LNRLVSEPAYVMLMRQ---PLDPESLGIILLEDFLGE 371 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHH-hcccccCHHHHHHhcC---ccChhhcceEEecccccc
Confidence 578999999999999999999999999998 5655555444333332 356555555544444433
No 142
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=56.93 E-value=20 Score=23.91 Aligned_cols=53 Identities=17% Similarity=0.245 Sum_probs=30.2
Q ss_pred CCCeeeHHHHHHHHHHHhC-CCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 128 NDGFISNGELFQVLKMMVG-NNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 128 ~~G~Is~~el~~~l~~~~g-~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
-||.++..|...+-.-+.. ..+++++...++.. +........++.+|...+..
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~ 65 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAE----AEALEEEAPDLYEFTSLIKE 65 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHH----HHHHHHhCCCHHHHHHHHHH
Confidence 3677777776655543212 34667777666665 33333344567777666654
No 143
>KOG4004|consensus
Probab=56.71 E-value=4.1 Score=31.36 Aligned_cols=57 Identities=21% Similarity=0.339 Sum_probs=39.1
Q ss_pred HHhhHHcCC-CCCeeeHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 119 FAFRIYDMD-NDGFISNGELFQVLKMMVGNNLK-DAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 119 ~~F~~~D~d-~~G~Is~~el~~~l~~~~g~~~~-~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
+.|-.+|+. .+|++|-.||.-+-.- -++ +.-+..++.. .|.|+||.|+.+||..++-
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl~ap----~ipme~c~~~f~e~----cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPLRAP----LIPMEHCTTRFFET----CDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eeeccccCCCccccccccccccccCC----cccHHhhchhhhhc----ccCCCCCceeHHHhhcccC
Confidence 357778865 5999999998654332 122 2223344444 9999999999999987653
No 144
>KOG0998|consensus
Probab=52.08 E-value=16 Score=34.45 Aligned_cols=126 Identities=19% Similarity=0.217 Sum_probs=79.9
Q ss_pred CCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCC-----------cccccccccchhcccccHHHHHHHHhhcc--------
Q psy11002 48 RNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPS-----------IHNVDSTFIYYIILYQFVSEFIQGVSQFS-------- 108 (195)
Q Consensus 48 ~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~-----------~~~~d~~~~g~i~~~i~f~eF~~~~~~~~-------- 108 (195)
.....+..+|+.+|..++|.|+..+.+..+.. +..-|..+-|.. +..+|...+....
T Consensus 8 ~~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l----~~q~f~~~lrlva~aq~~~~~ 83 (847)
T KOG0998|consen 8 PGQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFL----NRQGFYAALRLVAQAQSGREL 83 (847)
T ss_pred CccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCcc----ccccccccchHhhhhhcccCc
Confidence 34578889999999999999998866644432 233333333433 4444444332100
Q ss_pred --------------------------c-------------CCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCC
Q psy11002 109 --------------------------V-------------KGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNL 149 (195)
Q Consensus 109 --------------------------~-------------~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~ 149 (195)
. ......+....|+.+.+. +|.++-+..+.++.. ..+
T Consensus 84 ~~~~~~~~~~~pp~~~~~~~~~~~~~~~~~~s~~~~~p~~~~qe~aky~q~f~s~~p~-~g~~sg~~~~pil~~---s~L 159 (847)
T KOG0998|consen 84 SAKKVLPASAVPPPPKISHDTSPPSRPSSSTSAAPFVPAITPQEQAKYDQIFRSLSPS-NGLLSGDKAKPILLN---SKL 159 (847)
T ss_pred CccccccccCCCCCCccCccCCCcccCCCCCCCcccCCCCCHHHHHHHHHHHhccCCC-CCccccchhhhhhhc---CCC
Confidence 0 001113344467777654 888998888888854 446
Q ss_pred CHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 150 KDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 150 ~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
+...+..++.- .|.+.+|.++..||.-.|.-.
T Consensus 160 p~~~l~~iw~l----~d~d~~g~Ld~~ef~~am~l~ 191 (847)
T KOG0998|consen 160 PSDVLGRIWEL----SDIDKDGNLDRDEFAVAMHLI 191 (847)
T ss_pred Chhhhcccccc----ccccccCCCChhhhhhhhhHH
Confidence 66555555555 999999999999998877643
No 145
>KOG3449|consensus
Probab=51.94 E-value=55 Score=22.65 Aligned_cols=43 Identities=14% Similarity=0.318 Sum_probs=37.8
Q ss_pred HHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 117 LRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 117 ~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
+..+|-+++..++-..+..+++.+|.. .|....++.++.++..
T Consensus 3 yvaAYLL~~lgGn~~psa~DikkIl~s-VG~E~d~e~i~~vise 45 (112)
T KOG3449|consen 3 YVAAYLLAVLGGNASPSASDIKKILES-VGAEIDDERINLVLSE 45 (112)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHH-hCcccCHHHHHHHHHH
Confidence 345777888888889999999999999 7999999999999987
No 146
>PTZ00373 60S Acidic ribosomal protein P2; Provisional
Probab=47.63 E-value=70 Score=22.27 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=36.2
Q ss_pred HHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 117 LRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 117 ~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
...+|-+.-..++..+|.+++..++.. .|..+...++..+++.
T Consensus 5 yvaAYlL~~lgG~~~pTaddI~kIL~A-aGveVd~~~~~l~~~~ 47 (112)
T PTZ00373 5 YVAAYLMCVLGGNENPTKKEVKNVLSA-VNADVEDDVLDNFFKS 47 (112)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH-cCCCccHHHHHHHHHH
Confidence 345666666777888999999999999 8999999999988887
No 147
>PLN02952 phosphoinositide phospholipase C
Probab=47.09 E-value=61 Score=29.44 Aligned_cols=52 Identities=6% Similarity=0.038 Sum_probs=38.5
Q ss_pred CCCeeeHHHHHHHHHHHh-CCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 128 NDGFISNGELFQVLKMMV-GNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 128 ~~G~Is~~el~~~l~~~~-g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
+.|.++.+++..+.+.+. ....+..++..++.. +.. +++.++.++|..+|..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~----~~~-~~~~mt~~~l~~FL~~ 65 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCK----FSV-GGGHMGADQLRRFLVL 65 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHH----HhC-CCCccCHHHHHHHHHH
Confidence 468999999988777621 223467888888887 543 3467999999999874
No 148
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=46.19 E-value=27 Score=22.09 Aligned_cols=58 Identities=21% Similarity=0.271 Sum_probs=36.4
Q ss_pred ccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 95 QFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 95 i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
+.|...+..+..+. .. +.+..+...|+.=..++|+.+||.+.++.+.| +.-+..++..
T Consensus 9 ~~F~~L~~~l~~~l-~~---~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVG----D~lL~s~I~~ 66 (70)
T PF12174_consen 9 MPFPMLFSALSKHL-PP---SKMDLLQKHYEEFKKKKISREEFVRKLRQIVG----DQLLRSAIKS 66 (70)
T ss_pred ccHHHHHHHHHHHC-CH---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 36777666666653 22 33444445554446889999999999998655 4444444443
No 149
>KOG2301|consensus
Probab=45.12 E-value=16 Score=36.93 Aligned_cols=78 Identities=12% Similarity=0.132 Sum_probs=53.6
Q ss_pred CCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCC--HHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHH
Q psy11002 110 KGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLK--DAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASII 187 (195)
Q Consensus 110 ~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~--~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~ 187 (195)
...+.+....+...||++..|+|...++...+.. +..++. ...-.+++ +-++-...+|.|++..-+.++.+..+
T Consensus 1412 s~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~-L~ppL~~~k~~~~kli---~mdmp~~~gd~V~f~d~L~aL~~r~l 1487 (1592)
T KOG2301|consen 1412 SEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRS-LDPPLDLGKPNKRKLI---SMDLPMVSGDRVHCLDILFALTKRVL 1487 (1592)
T ss_pred CcccHHHHHHHHHhcChhhheeeeHhhHHHHHHh-cCCccccCCCCCceee---eeecCcCCCCeeehhhHHHHHHHHhh
Confidence 3445678888999999999999999999999998 443321 11111222 22455667888999888888877655
Q ss_pred hhcC
Q psy11002 188 TMFP 191 (195)
Q Consensus 188 ~~~~ 191 (195)
...+
T Consensus 1488 ~i~~ 1491 (1592)
T KOG2301|consen 1488 GIKK 1491 (1592)
T ss_pred cccc
Confidence 5443
No 150
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=43.67 E-value=1.3e+02 Score=22.04 Aligned_cols=48 Identities=10% Similarity=0.050 Sum_probs=32.9
Q ss_pred cHHHHHHHHhhc--ccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHH
Q psy11002 96 FVSEFIQGVSQF--SVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 96 ~f~eF~~~~~~~--~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~ 143 (195)
+-..|..++... ....-....+-.+|..+-..+...|++++|..+|..
T Consensus 20 ~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 20 DSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp EHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHH
Confidence 566777777643 223345677888999876667778999999999987
No 151
>KOG3442|consensus
Probab=43.65 E-value=58 Score=23.10 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=36.1
Q ss_pred CCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCce
Q psy11002 128 NDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKI 173 (195)
Q Consensus 128 ~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~I 173 (195)
..|.||.+|-+++|. +...++.++++.-++.+|..=|....|..
T Consensus 52 ~~~~iTlqEa~qILn--V~~~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 52 SNGKITLQEAQQILN--VKEPLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred ccccccHHHHhhHhC--CCCCCCHHHHHHHHHHHHhccCcccCcce
Confidence 357899999999998 57789999999999998887777766653
No 152
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=42.60 E-value=24 Score=16.76 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=11.9
Q ss_pred cCCCCCeeeHHHHHHH
Q psy11002 125 DMDNDGFISNGELFQV 140 (195)
Q Consensus 125 D~d~~G~Is~~el~~~ 140 (195)
|.|++|.|+.-++.-+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 6789999998887644
No 153
>TIGR03573 WbuX N-acetyl sugar amidotransferase. This enzyme has been implicated in the formation of the acetamido moiety (sugar-NC(=NH)CH3) which is found on some exopolysaccharides and is positively charged at neutral pH. The reaction involves ligation of ammonia with a sugar N-acetyl group, displacing water. In E. coli (O145 strain) and Pseudomonas aeruginosa (O12 strain) this gene is known as wbuX and ifnA respectively and likely acts on sialic acid. In Campylobacter jejuni, the gene is known as pseA and acts on pseudaminic acid in the process of flagellin glycosylation. In other Pseudomonas strains and various organisms it is unclear what the identity of the sugar substrate is, and in fact, the phylogenetic tree of this family sports a considerably deep branching suggestive of possible major differences in substrate structure. Nevertheless, the family is characterized by a conserved tetracysteine motif (CxxC.....[GN]xCxxC) possibly indicative of a metal binding site, as well as an
Probab=42.59 E-value=53 Score=27.45 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=21.7
Q ss_pred CCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHH
Q psy11002 128 NDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSV 181 (195)
Q Consensus 128 ~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~ 181 (195)
.+|.||++|-.+.++. .....+++.++.+++. ++ ||-+||-+.
T Consensus 299 R~G~itReeal~~v~~-~d~~~~~~~~~~~~~~----lg------~t~~ef~~~ 341 (343)
T TIGR03573 299 RSGRITREEAIELVKE-YDGEFPKEDLEYFLKY----LG------ISEEEFWKT 341 (343)
T ss_pred HcCCCCHHHHHHHHHH-hcccccHHHHHHHHHH----hC------CCHHHHHHH
Confidence 3555666665555555 3333334444444444 44 555666554
No 154
>KOG1954|consensus
Probab=42.23 E-value=38 Score=29.05 Aligned_cols=56 Identities=27% Similarity=0.309 Sum_probs=41.9
Q ss_pred HHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHH
Q psy11002 117 LRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCS 180 (195)
Q Consensus 117 ~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~ 180 (195)
.-.+|-.+-+ -+|+|+-..-+..+ .+.+++...+..+++. .|.|.||.++-+||.-
T Consensus 446 yde~fy~l~p-~~gk~sg~~ak~~m---v~sklpnsvlgkiwkl----ad~d~dg~ld~eefal 501 (532)
T KOG1954|consen 446 YDEIFYTLSP-VNGKLSGRNAKKEM---VKSKLPNSVLGKIWKL----ADIDKDGMLDDEEFAL 501 (532)
T ss_pred hHhhhhcccc-cCceeccchhHHHH---HhccCchhHHHhhhhh----hcCCcccCcCHHHHHH
Confidence 3445655543 48888877766655 4566888888888887 9999999999999964
No 155
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=41.31 E-value=68 Score=24.28 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=30.1
Q ss_pred cCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 125 DMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 125 D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
..|.+|.+..++|.+.++. .+..++.+.+.+++..
T Consensus 27 ~ld~~G~v~v~~Ll~~~~~-~~~~~t~~~l~~vV~~ 61 (179)
T PRK00819 27 TLDEEGWVDIDALIEALAK-AYKWVTRELLEAVVES 61 (179)
T ss_pred ccCCCCCEEHHHHHHHHHH-ccCCCCHHHHHHHHHc
Confidence 4578999999999999886 4677999999999986
No 156
>cd05833 Ribosomal_P2 Ribosomal protein P2. This subfamily represents the eukaryotic large ribosomal protein P2. Eukaryotic P1 and P2 are functionally equivalent to the bacterial protein L7/L12, but are not homologous to L7/L12. P2 is located in the L12 stalk, with proteins P1, P0, L11, and 28S rRNA. P1 and P2 are the only proteins in the ribosome to occur as multimers, always appearing as sets of heterodimers. Recent data indicate that eukaryotes have four copies (two heterodimers), while most archaeal species contain six copies of L12p (three homodimers). Bacteria may have four or six copies of L7/L12 (two or three homodimers) depending on the species. Experiments using S. cerevisiae P1 and P2 indicate that P1 proteins are positioned more internally with limited reactivity in the C-terminal domains, while P2 proteins seem to be more externally located and are more likely to interact with other cellular components. In lower eukaryotes, P1 and P2 are further subdivided into P1A, P1B, P2
Probab=41.16 E-value=1e+02 Score=21.35 Aligned_cols=56 Identities=16% Similarity=0.310 Sum_probs=42.5
Q ss_pred HHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 118 RFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 118 ~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
..+|-+.-..++..+|.+++..++.. .|..+....+..+++. +. + .+.+|.+..-.
T Consensus 4 vaAylL~~l~g~~~pTa~dI~~IL~A-aGveVe~~~~~lf~~~----L~-G----Kdi~eLIa~g~ 59 (109)
T cd05833 4 VAAYLLAVLGGNASPSAADVKKILGS-VGVEVDDEKLNKVISE----LE-G----KDVEELIAAGK 59 (109)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHH-cCCCccHHHHHHHHHH----Hc-C----CCHHHHHHHhH
Confidence 34566666778889999999999999 8999999999888887 54 1 44666665443
No 157
>KOG4004|consensus
Probab=40.27 E-value=13 Score=28.62 Aligned_cols=56 Identities=20% Similarity=0.162 Sum_probs=38.1
Q ss_pred cccccccc-cchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHH
Q psy11002 80 IHNVDSTF-IYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLK 142 (195)
Q Consensus 80 ~~~~d~~~-~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~ 142 (195)
+..+|.-. +|++ +-.|...+-+... ..+......|.-.|.|++|+|+.+|+...+.
T Consensus 193 f~qld~~p~d~~~----sh~el~pl~ap~i---pme~c~~~f~e~cd~~nd~~ial~ew~~c~g 249 (259)
T KOG4004|consen 193 FGQLDQHPIDGYL----SHTELAPLRAPLI---PMEHCTTRFFETCDLDNDKYIALDEWAGCFG 249 (259)
T ss_pred eccccCCCccccc----cccccccccCCcc---cHHhhchhhhhcccCCCCCceeHHHhhcccC
Confidence 45555542 4444 6666555444332 4556778899999999999999999987653
No 158
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=39.19 E-value=62 Score=24.60 Aligned_cols=36 Identities=25% Similarity=0.566 Sum_probs=24.3
Q ss_pred HcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 124 YDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 124 ~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
+..|.+|++..++|.+.+.. .+..++.+++.+++..
T Consensus 25 L~~d~~G~v~v~dLL~~~~~-~~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 25 LVMDPDGWVSVDDLLRALRF-KGLWVTEEDIREVVET 60 (186)
T ss_dssp ----TT--EEHHHHHHHHHH-T-TT--HHHHHHHHHH
T ss_pred CccCCCCCEeHHHHHHHHHH-cCCCCCHHHHHHHHhh
Confidence 45678999999999999987 5777899999999986
No 159
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=39.05 E-value=93 Score=21.04 Aligned_cols=64 Identities=2% Similarity=0.025 Sum_probs=41.5
Q ss_pred cHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 96 FVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 96 ~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
.-.+|..++.... ..-..+++..+-..+-.++....+..++...+..+.+...++++++.+-..
T Consensus 21 P~~Dy~PLlALL~-r~Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~vt~~~P~~~di~RV~~~ 84 (96)
T PF11829_consen 21 PPTDYVPLLALLR-RRLTDDEVAEVAAELAARGDPPVDRIDIGVAITRVTDELPTPEDIERVRAR 84 (96)
T ss_dssp -HHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHHCSS-S-HHHHHHHHHH
T ss_pred CCCccHHHHHHhc-ccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHcCCcCHHHHHHHHHH
Confidence 4456777666653 335556777777776556666668888888888866777888888776665
No 160
>KOG3866|consensus
Probab=38.05 E-value=38 Score=28.10 Aligned_cols=54 Identities=17% Similarity=0.233 Sum_probs=35.9
Q ss_pred eHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHhhc
Q psy11002 133 SNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIITMF 190 (195)
Q Consensus 133 s~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~~~ 190 (195)
|.+.|++++...-|.....-.-+.+ |.-.|.|+||.++-.|.-.+++..+.+++
T Consensus 225 SkdQLkEVWEE~DgLdpn~fdPKTF----F~LHD~NsDGfldeqELEaLFtkELEKvY 278 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPNQFDPKTF----FALHDLNSDGFLDEQELEALFTKELEKVY 278 (442)
T ss_pred cHHHHHHHHHHhcCCCcccCCcchh----eeeeccCCcccccHHHHHHHHHHHHHHhc
Confidence 5667777666522333222222333 44599999999999999999988877664
No 161
>KOG0506|consensus
Probab=37.90 E-value=62 Score=28.55 Aligned_cols=66 Identities=18% Similarity=0.219 Sum_probs=50.0
Q ss_pred HhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCC-----CCCCceeHHHHHHHHHhhHH
Q psy11002 120 AFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADK-----DEDGKINFEEFCSVSTASII 187 (195)
Q Consensus 120 ~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~-----~~dg~Is~~EF~~~l~~~~~ 187 (195)
+|..|-..+++.++..-|..+|++ .|..-++--++++++.+ +..|. ...+.++.+.|.+++...+.
T Consensus 91 LFyLiaegq~ekipihKFiTALks-tGLrtsDPRLk~mMd~m-Kd~dq~~~e~S~gw~LdKDlFKkcI~sSI~ 161 (622)
T KOG0506|consen 91 LFYLIAEGQSEKIPIHKFITALKS-TGLRTSDPRLKDMMDEM-KDVDQEENESSSGWLLDKDLFKKCIFSSIV 161 (622)
T ss_pred hhHHhhcCCcCcccHHHHHHHHHH-cCCCcCCchHHHHHHHH-HHHHhhhcccccceeecHHHHHHhhccchh
Confidence 677775566899999999999999 79888887888877773 33442 23467999999998876643
No 162
>PF11020 DUF2610: Domain of unknown function (DUF2610); InterPro: IPR021277 This family is conserved in Proteobacteria. One member is annotated as being elongation factor P but this could not be confirmed.
Probab=37.13 E-value=60 Score=21.11 Aligned_cols=52 Identities=12% Similarity=0.178 Sum_probs=32.5
Q ss_pred CCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 129 DGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 129 ~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
.|.=...--..||++..|-.++++..+.+.+. ++...+..|+++|.+.+...
T Consensus 26 ~~~HPl~~Q~~WLskeRgG~IP~~V~~sl~kL----~~La~~N~v~feeLc~YAL~ 77 (82)
T PF11020_consen 26 PDHHPLQFQATWLSKERGGQIPEKVMDSLSKL----YKLAKENNVSFEELCVYALG 77 (82)
T ss_pred CCCCchHHHHHHHHHhhCCCCCHHHHHHHHHH----HHHHHHcCCCHHHHHHHHHH
Confidence 33333444456777655666777666665554 44445556999999887554
No 163
>COG4103 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.91 E-value=60 Score=23.66 Aligned_cols=59 Identities=20% Similarity=0.369 Sum_probs=40.9
Q ss_pred HHhhHHcCCCCCeeeHHHHH---HHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 119 FAFRIYDMDNDGFISNGELF---QVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 119 ~~F~~~D~d~~G~Is~~el~---~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
..|.+.+ -||.++..|.. ++++. ...++.+++.+++.. ...-+...+++-.|...+.+.
T Consensus 34 Llf~Vm~--ADG~v~~~E~~a~r~il~~--~f~i~~~~l~ali~~----~e~~~~Ea~d~y~fts~l~r~ 95 (148)
T COG4103 34 LLFHVME--ADGTVSESEREAFRAILKE--NFGIDGEELDALIEA----GEEAGYEAIDLYSFTSVLKRH 95 (148)
T ss_pred HHHHHHh--cccCcCHHHHHHHHHHHHH--HcCCCHHHHHHHHHH----HHHhhHHHHHHHHHHHHHHHh
Confidence 5677765 56778877744 45554 456888999998887 544455568888888877754
No 164
>cd07316 terB_like_DjlA N-terminal tellurium resistance protein terB-like domain of heat shock DnaJ-like proteins. Tellurium resistance terB-like domain of the DnaJ-like DjlA proteins. This family represents the terB-like domain of DjlA-like proteins, a subgroup of heat shock DnaJ-like proteins. Escherichia coli DjlA is a type III membrane protein with a small N-terminal transmembrane region and DnaJ-like domain on the extreme C-terminus. Overproduction has been shown to activate the RcsC pathway, which regulates the production of the capsular exopolysaccharide colanic acid. The specific function of this domain is unknown.
Probab=35.56 E-value=1.3e+02 Score=19.81 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=8.0
Q ss_pred CCeeeHHHHHHHHH
Q psy11002 129 DGFISNGELFQVLK 142 (195)
Q Consensus 129 ~G~Is~~el~~~l~ 142 (195)
||.++..|...+-.
T Consensus 13 DG~v~~~E~~~i~~ 26 (106)
T cd07316 13 DGRVSEAEIQAARA 26 (106)
T ss_pred cCCcCHHHHHHHHH
Confidence 56666666555444
No 165
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=34.86 E-value=94 Score=19.33 Aligned_cols=31 Identities=13% Similarity=0.259 Sum_probs=26.9
Q ss_pred CCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 129 DGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 129 ~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
+=.|+.+-++..+.+ .|.++++..++++.+.
T Consensus 29 NPpine~mir~M~~Q-MG~kpSekqi~Q~m~~ 59 (64)
T PF03672_consen 29 NPPINEKMIRAMMMQ-MGRKPSEKQIKQMMRS 59 (64)
T ss_pred CCCCCHHHHHHHHHH-hCCCccHHHHHHHHHH
Confidence 446999999999999 5999999999988876
No 166
>TIGR00988 hip integration host factor, beta subunit. This protein forms a site-specific DNA-binding heterodimer with the homologous integration host factor alpha subunit. It is closely related to the DNA-binding protein HU.
Probab=34.41 E-value=47 Score=21.88 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=24.5
Q ss_pred eHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhC--CCCCCceeHHHH
Q psy11002 133 SNGELFQVLKMMVGNNLKDAQLQQIVDKTILFAD--KDEDGKINFEEF 178 (195)
Q Consensus 133 s~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d--~~~dg~Is~~EF 178 (195)
+..||.+.+.. ....++..+++.+++.++..+- ...++.|.+..|
T Consensus 2 ~k~eli~~i~~-~~~~~s~~~v~~vv~~~~~~i~~~L~~g~~V~l~gf 48 (94)
T TIGR00988 2 TKSELIERIAT-QQSHLPAKDVEDAVKTMLEHMASALAQGDRIEIRGF 48 (94)
T ss_pred CHHHHHHHHHH-HcCCCCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCc
Confidence 56677777664 2344677776666666444331 233445555443
No 167
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=33.73 E-value=1.7e+02 Score=22.56 Aligned_cols=80 Identities=14% Similarity=0.033 Sum_probs=43.9
Q ss_pred ccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHH-HHHHHHHHhCCCCCHHHHHHHHHHHhh
Q psy11002 85 STFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGE-LFQVLKMMVGNNLKDAQLQQIVDKTIL 163 (195)
Q Consensus 85 ~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~e-l~~~l~~~~g~~~~~~~~~~l~~~~~~ 163 (195)
.+.+|.| +.+++...+...... .+++ .+++.--+++||..+ |.+.+.. ++ .+.+|+-+.+..
T Consensus 8 sDFDGTI----Tl~Ds~~~itdtf~~----~e~k---~l~~~vls~tiS~rd~~g~mf~~-i~--~s~~Eile~llk--- 70 (220)
T COG4359 8 SDFDGTI----TLNDSNDYITDTFGP----GEWK---ALKDGVLSKTISFRDGFGRMFGS-IH--SSLEEILEFLLK--- 70 (220)
T ss_pred ecCCCce----EecchhHHHHhccCc----hHHH---HHHHHHhhCceeHHHHHHHHHHh-cC--CCHHHHHHHHHh---
Confidence 3455555 777777777654322 1223 445555677888544 5555554 44 444555554443
Q ss_pred hhCCCCCCceeHHHHHHHHHhh
Q psy11002 164 FADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 164 ~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.+-.+ -.+.||+++...+
T Consensus 71 ~i~Id----p~fKef~e~ike~ 88 (220)
T COG4359 71 DIKID----PGFKEFVEWIKEH 88 (220)
T ss_pred hcccC----ccHHHHHHHHHHc
Confidence 12222 3478888887754
No 168
>TIGR02675 tape_meas_nterm tape measure domain. Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Probab=33.03 E-value=55 Score=20.82 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=13.1
Q ss_pred CCCCeeeHHHHHHHHHH
Q psy11002 127 DNDGFISNGELFQVLKM 143 (195)
Q Consensus 127 d~~G~Is~~el~~~l~~ 143 (195)
-..|++..+||..++..
T Consensus 26 ~~~Gkv~~ee~n~~~e~ 42 (75)
T TIGR02675 26 LASGKLRGEEINSLLEA 42 (75)
T ss_pred HHcCcccHHHHHHHHHH
Confidence 35788888888888764
No 169
>PF10437 Lip_prot_lig_C: Bacterial lipoate protein ligase C-terminus; InterPro: IPR019491 This is the C-terminal domain of a bacterial lipoate protein ligase. There is no conservation between this C terminus and that of vertebrate lipoate protein ligase C-termini, but both are associated with IPR004143 from INTERPRO, further upstream. This C-terminal domain is more stable than IPR004143 from INTERPRO and the hypothesis is that the C-terminal domain has a role in recognising the lipoyl domain and/or transferring the lipoyl group onto it from the lipoyl-AMP intermediate. C-terminal fragments of length 172 to 193 amino acid residues are observed in the eubacterial enzymes whereas in their archaeal counterparts the C-terminal segment is significantly smaller, ranging in size from 87 to 107 amino acid residues. ; PDB: 1X2G_A 3A7R_A 3A7A_A 1X2H_C 1VQZ_A 3R07_C.
Probab=32.60 E-value=77 Score=20.41 Aligned_cols=42 Identities=21% Similarity=0.368 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCC-CCceeHHHHHHHH
Q psy11002 134 NGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDE-DGKINFEEFCSVS 182 (195)
Q Consensus 134 ~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~-dg~Is~~EF~~~l 182 (195)
.++|.+.| .|.+.+.+.+.+.+.. .+.+. =|.++-+||++++
T Consensus 44 i~~le~~L---~G~~~~~~~i~~~l~~----~~~~~~~~~~~~~el~~~l 86 (86)
T PF10437_consen 44 IEELEEAL---IGCPYDREAIKEALNS----VDLEDYFGNISVEELIELL 86 (86)
T ss_dssp HHHHHHHH---TTCBSSHHHHHHHHHH----CHGGGTCCTHHHHHHHHHH
T ss_pred HHHHHHHH---HhcCCCHHHHHHHHHH----hCHhhccccCCHHHHHHhC
Confidence 56666666 5888999999888887 54332 3568888988875
No 170
>PLN00138 large subunit ribosomal protein LP2; Provisional
Probab=31.17 E-value=1.8e+02 Score=20.29 Aligned_cols=41 Identities=17% Similarity=0.310 Sum_probs=33.2
Q ss_pred HHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 119 FAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 119 ~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
.+|-+.-..++..+|.+++..+|.. .|..+...++..+++.
T Consensus 5 aAyll~~l~g~~~pta~dI~~IL~A-aGvevd~~~~~~f~~~ 45 (113)
T PLN00138 5 AAYLLAVLGGNTCPSAEDLKDILGS-VGADADDDRIELLLSE 45 (113)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHH-cCCcccHHHHHHHHHH
Confidence 3455555567778999999999999 7999999988888887
No 171
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=31.08 E-value=94 Score=22.31 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=36.5
Q ss_pred CCCeeeHHHHHHHHHHHhC---------CCCCHHHHHHHHHHHhhhhCCCCCC-ceeHHHHHHH
Q psy11002 128 NDGFISNGELFQVLKMMVG---------NNLKDAQLQQIVDKTILFADKDEDG-KINFEEFCSV 181 (195)
Q Consensus 128 ~~G~Is~~el~~~l~~~~g---------~~~~~~~~~~l~~~~~~~~d~~~dg-~Is~~EF~~~ 181 (195)
|+-.||.+||.+++.. .. ..++.++++.+.+. +...+.+ .++..|-+++
T Consensus 80 Gd~~Ls~eEf~~L~~~-~~~LV~~rg~WV~ld~~~l~~~~~~----~~~~~~~~~lt~~e~Lr~ 138 (141)
T PF12419_consen 80 GDEELSEEEFEQLVEQ-KRPLVRFRGRWVELDPEELRRALAF----LEKAPKGEKLTLAEALRA 138 (141)
T ss_pred CCEECCHHHHHHHHHc-CCCeEEECCEEEEECHHHHHHHHHH----HHhccccCCCCHHHHHHH
Confidence 6678999999999986 22 13688888888887 6665554 4888887665
No 172
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=30.65 E-value=95 Score=21.01 Aligned_cols=48 Identities=15% Similarity=0.138 Sum_probs=30.8
Q ss_pred eeeHHHHHHHHHHHhCCCCCHHHHHHHHHH---HhhhhCCCCCCceeHHHHHHHHHhhH
Q psy11002 131 FISNGELFQVLKMMVGNNLKDAQLQQIVDK---TILFADKDEDGKINFEEFCSVSTASI 186 (195)
Q Consensus 131 ~Is~~el~~~l~~~~g~~~~~~~~~~l~~~---~~~~~d~~~dg~Is~~EF~~~l~~~~ 186 (195)
.++.+||..++.. .| + +.+++. .++.++.+....++-+|.+++|..++
T Consensus 35 p~s~~eL~~~l~~-~g--~-----~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p 85 (105)
T cd03035 35 GLDAATLERWLAK-VG--W-----ETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHP 85 (105)
T ss_pred CCCHHHHHHHHHH-hC--h-----HHHHccCchHHHhCChhhhccCCHHHHHHHHHhCc
Confidence 4888999998887 45 1 222222 34445544224578899999998873
No 173
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=30.30 E-value=86 Score=20.91 Aligned_cols=60 Identities=12% Similarity=0.107 Sum_probs=37.3
Q ss_pred hhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHH---HHhhhhCCCCCCceeHHHHHHHHHhhHH
Q psy11002 121 FRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVD---KTILFADKDEDGKINFEEFCSVSTASII 187 (195)
Q Consensus 121 F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~---~~~~~~d~~~dg~Is~~EF~~~l~~~~~ 187 (195)
|...|-. ....+.+++.+++.. .+. + +..+++ ..++.++......++-+|+++++..++.
T Consensus 26 ~~~idi~-~~~~~~~~l~~~~~~-~~~--~---~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~ 88 (105)
T cd02977 26 YEFIDYL-KEPPTKEELKELLAK-LGL--G---VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPK 88 (105)
T ss_pred cEEEeec-cCCCCHHHHHHHHHh-cCC--C---HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcC
Confidence 4444543 345788999999887 452 1 222333 2334455543457899999999998843
No 174
>PRK00523 hypothetical protein; Provisional
Probab=29.44 E-value=1.2e+02 Score=19.30 Aligned_cols=31 Identities=13% Similarity=0.274 Sum_probs=27.0
Q ss_pred CCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 129 DGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 129 ~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
+=.|+.+-++..+.+ .|.++++..++++.+.
T Consensus 37 NPpine~mir~M~~Q-MGqKPSekki~Q~m~~ 67 (72)
T PRK00523 37 NPPITENMIRAMYMQ-MGRKPSESQIKQVMRS 67 (72)
T ss_pred CcCCCHHHHHHHHHH-hCCCccHHHHHHHHHH
Confidence 456999999999999 5999999999988876
No 175
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.23 E-value=1.2e+02 Score=19.20 Aligned_cols=31 Identities=10% Similarity=0.253 Sum_probs=27.0
Q ss_pred CCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 129 DGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 129 ~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
+=.|+.+-++..+.+ .|.++|+..++++.+.
T Consensus 36 NPpine~~iR~M~~q-mGqKpSe~kI~Qvm~~ 66 (71)
T COG3763 36 NPPINEEMIRMMMAQ-MGQKPSEKKINQVMRS 66 (71)
T ss_pred CCCCCHHHHHHHHHH-hCCCchHHHHHHHHHH
Confidence 446999999999999 5999999999998886
No 176
>COG5562 Phage envelope protein [General function prediction only]
Probab=28.82 E-value=46 Score=23.95 Aligned_cols=49 Identities=22% Similarity=0.471 Sum_probs=31.5
Q ss_pred CCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 128 NDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 128 ~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
.+|.|.....+.+..- ....+..-++...+. +..|+.+|+||+..+-+.
T Consensus 53 ~~~~Il~~g~k~~~~V--~~~~n~~~i~~al~~-------~qsGqttF~ef~~~la~A 101 (137)
T COG5562 53 SDGVILIKGVKKVVGV--AEVFNTTLIKTALRR-------HQSGQTTFEEFCSALAEA 101 (137)
T ss_pred cCCEEEeeccccccce--ecccCHHHHHHHHHH-------HhcCCccHHHHHHHHHhC
Confidence 4667777777666552 333444445444443 567899999999987654
No 177
>KOG2419|consensus
Probab=28.79 E-value=63 Score=29.64 Aligned_cols=72 Identities=18% Similarity=0.212 Sum_probs=48.4
Q ss_pred HHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHH-----HHHHHHHHhhhhCCCCC--------------------
Q psy11002 116 KLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQ-----LQQIVDKTILFADKDED-------------------- 170 (195)
Q Consensus 116 ~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~-----~~~l~~~~~~~~d~~~d-------------------- 170 (195)
....++..+|-+.++++++.++..+..+ ++..+...+ .-.=...+++-+|.+++
T Consensus 438 ~~~~~~s~~d~~~~fk~sf~~~~~l~~~-F~~vvaa~~~~~~D~~~~k~~~~~~lDl~g~~~~~~~~~~lYs~vS~~~~~ 516 (975)
T KOG2419|consen 438 FAKRILSIVDYEEDFKLSFSEFSDLSFA-FGNVVAANKLAWFDMLNEKEELFKALDLNGDPAHAPKQPVLYSYVSYPFLK 516 (975)
T ss_pred hhhhcccccccccCceEeeehHHHHHHH-HHHHHHhhhcchhhhcccchhheehhhccCCcccCccccchhhhccccccc
Confidence 3456788899999999999999887776 443221111 00001123445888888
Q ss_pred ---CceeHHHHHHHHHhhHHh
Q psy11002 171 ---GKINFEEFCSVSTASIIT 188 (195)
Q Consensus 171 ---g~Is~~EF~~~l~~~~~~ 188 (195)
|.++.+|.+.++...+.+
T Consensus 517 ~s~~~vtVDe~v~ll~~~i~~ 537 (975)
T KOG2419|consen 517 KSFGVVTVDELVALLALDIIQ 537 (975)
T ss_pred cccCeeEHHHHHHHHHHHHHH
Confidence 999999999998865444
No 178
>TIGR00244 transcriptional regulator NrdR. Members of this almost entirely bacterial family contain an ATP cone domain (PFAM:PF03477). There is never more than one member per genome. Common gene symbols given include nrdR, ybaD, ribX and ytcG. The member from Streptomyces coelicolor is found upstream in the operon of the class II oxygen-independent ribonucleotide reductase gene nrdJ and was shown to repress nrdJ expression. Many members of this family are found near genes for riboflavin biosynthesis in Gram-negative bacteria, suggesting a role in that pathway. However, a phylogenetic profiling study associates members of this family with the presence of a palindromic signal with consensus acaCwAtATaTwGtgt, termed the NrdR-box, an upstream element for most operons for ribonucleotide reductase of all three classes in bacterial genomes.
Probab=28.26 E-value=2.4e+02 Score=20.65 Aligned_cols=41 Identities=5% Similarity=0.014 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHH
Q psy11002 147 NNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASII 187 (195)
Q Consensus 147 ~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~ 187 (195)
.+++.+.++.++..+...+-..++..|+-.+.-.++...+.
T Consensus 77 RpVs~e~ie~~v~~Ie~~l~~~~~~EI~S~~IGe~Vm~~L~ 117 (147)
T TIGR00244 77 RPVSFDDLEHAINHIEAQLRAQGEREVPSELIGQMVMQYLK 117 (147)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHh
Confidence 34555555555555554454455555555555555544433
No 179
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=27.60 E-value=79 Score=20.35 Aligned_cols=40 Identities=18% Similarity=0.356 Sum_probs=24.1
Q ss_pred HHHHHhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 116 KLRFAFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 116 ~~~~~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
.++.+... ....|+||.+++..+|.. ..++.+.++.++..
T Consensus 8 ~i~~Li~~--gK~~G~lT~~eI~~~L~~---~~~~~e~id~i~~~ 47 (82)
T PF03979_consen 8 AIKKLIEK--GKKKGYLTYDEINDALPE---DDLDPEQIDEIYDT 47 (82)
T ss_dssp HHHHHHHH--HHHHSS-BHHHHHHH-S----S---HHHHHHHHHH
T ss_pred HHHHHHHH--HhhcCcCCHHHHHHHcCc---cCCCHHHHHHHHHH
Confidence 44444443 235889999999999874 34788888888877
No 180
>PRK14981 DNA-directed RNA polymerase subunit F; Provisional
Probab=27.28 E-value=1.4e+02 Score=20.56 Aligned_cols=27 Identities=22% Similarity=0.319 Sum_probs=16.9
Q ss_pred eHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 133 SNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 133 s~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
+.+|++.++.+ ....+++++++++++.
T Consensus 80 ~~dElrai~~~-~~~~~~~e~l~~ILd~ 106 (112)
T PRK14981 80 TRDELRAIFAK-ERYTLSPEELDEILDI 106 (112)
T ss_pred CHHHHHHHHHH-hccCCCHHHHHHHHHH
Confidence 45666666666 4556666666666654
No 181
>PF03732 Retrotrans_gag: Retrotransposon gag protein ; InterPro: IPR005162 Transposable elements (TEs) promote various chromosomal rearrangements more efficiently, and often more specifically, than other cellular processes. Retrotransposons are structurally similar to retroviruses and are bounded by long terminal repeats. This entry represents eukaryotic Gag or capsid-related retrotranspon-related proteins. There is a central motif QGXXEXXXXXFXXLXXH that is common to Retroviridae gag-proteins, but is poorly conserved.
Probab=26.10 E-value=1.7e+02 Score=18.37 Aligned_cols=36 Identities=11% Similarity=0.105 Sum_probs=20.4
Q ss_pred cHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCee
Q psy11002 96 FVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFI 132 (195)
Q Consensus 96 ~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I 132 (195)
+|++|...+............++.-+..+=+ +++.|
T Consensus 28 ~W~~~~~~~~~~f~~~~~~~~~~~~l~~l~Q-~~esv 63 (96)
T PF03732_consen 28 TWEEFKDAFRKRFFPPDRKEQARQELNSLRQ-GNESV 63 (96)
T ss_pred CHHHHHHHHHHHHhhhhccccchhhhhhhhc-cCCcH
Confidence 7888888887664443444444444544444 44433
No 182
>KOG0042|consensus
Probab=26.02 E-value=1.2e+02 Score=27.43 Aligned_cols=59 Identities=17% Similarity=0.258 Sum_probs=42.1
Q ss_pred cccccccccchhcccccHHHHHHHHhhcccCCchHHHHHHHhhHHcCCCCCeeeHHHHHHHHHH
Q psy11002 80 IHNVDSTFIYYIILYQFVSEFIQGVSQFSVKGDKESKLRFAFRIYDMDNDGFISNGELFQVLKM 143 (195)
Q Consensus 80 ~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~Is~~el~~~l~~ 143 (195)
+..+|.+..+.+ ....-+..+.... ..-+.+.+....+..|..-+|+++.+|+.+++..
T Consensus 599 f~~lD~~k~~~~----~i~~v~~vlk~~~-~~~d~~~~~~~l~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 599 FAFLDADKKAYQ----AIADVLKVLKSEN-VGWDEDRLHEELQEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHhhcchHHHHH----HHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhhcceeeHHHHHHHHHH
Confidence 444555444444 6677777777663 3445567788888888888999999999988886
No 183
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=25.93 E-value=1.1e+02 Score=21.73 Aligned_cols=61 Identities=10% Similarity=0.154 Sum_probs=34.9
Q ss_pred hhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhH
Q psy11002 121 FRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASI 186 (195)
Q Consensus 121 F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~ 186 (195)
|...|-.. ..++.+||..++.. .|.. .+.+-.--...++.++.+. ..++-+|.++++..++
T Consensus 27 ~~~~d~~~-~~~s~~eL~~~l~~-~~~~--~~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P 87 (132)
T PRK13344 27 YKEQNLGK-EPLTKEEILAILTK-TENG--IESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENP 87 (132)
T ss_pred eEEEECCC-CCCCHHHHHHHHHH-hCCC--HHHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCc
Confidence 44444433 34889999999987 5532 1111111111334455443 4578888999888873
No 184
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=25.93 E-value=1.6e+02 Score=17.92 Aligned_cols=36 Identities=25% Similarity=0.197 Sum_probs=23.7
Q ss_pred CCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHH
Q psy11002 129 DGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSV 181 (195)
Q Consensus 129 ~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~ 181 (195)
+|.++..+|...+... +..+|...-|.-++.+|++.
T Consensus 21 ~g~v~ls~l~~~~~~~-----------------~~~f~~~~yG~~~l~~ll~~ 56 (74)
T PF12872_consen 21 DGWVSLSQLGQEYKKK-----------------YPDFDPRDYGFSSLSELLES 56 (74)
T ss_dssp TSSEEHHHHHHHHHHH-----------------HTT--TCCTTSSSHHHHHHT
T ss_pred CceEEHHHHHHHHHHH-----------------CCCCCccccCCCcHHHHHHh
Confidence 5677777777776652 13377777888888888865
No 185
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=25.92 E-value=2.2e+02 Score=22.93 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=36.3
Q ss_pred CCeeeHHHHHHHHHH----HhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHH
Q psy11002 129 DGFISNGELFQVLKM----MVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSV 181 (195)
Q Consensus 129 ~G~Is~~el~~~l~~----~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~ 181 (195)
.-.++..+|.++|.. ..|..++++.+.-+-+.++..-....++.|++..|..-
T Consensus 176 p~~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~Ke 232 (254)
T PF02864_consen 176 PPKVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCKE 232 (254)
T ss_dssp -SEEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHTS
T ss_pred CCcccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhhc
Confidence 446889999999884 35788999999888888776555556789999999653
No 186
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=25.76 E-value=79 Score=16.57 Aligned_cols=16 Identities=25% Similarity=0.474 Sum_probs=13.4
Q ss_pred CCceeHHHHHHHHHhh
Q psy11002 170 DGKINFEEFCSVSTAS 185 (195)
Q Consensus 170 dg~Is~~EF~~~l~~~ 185 (195)
.|.|+++|++.+..+-
T Consensus 2 ~~~i~~~~~~d~a~rv 17 (33)
T PF09373_consen 2 SGTISKEEYLDMASRV 17 (33)
T ss_pred CceecHHHHHHHHHHH
Confidence 5789999999988765
No 187
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=25.48 E-value=1.2e+02 Score=25.42 Aligned_cols=66 Identities=11% Similarity=0.148 Sum_probs=35.8
Q ss_pred hHHHHHHHhhHH--cCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 113 KESKLRFAFRIY--DMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 113 ~~~~~~~~F~~~--D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
.++++..+...+ |.|+.-.+--+||.+.... ++++.-+..++-+.+++...=.|.+=|.|...-+.
T Consensus 39 ~~~e~~A~l~Efr~DyNr~HF~R~~eF~~~~~~-----l~~~~r~~FidFLerSctaEFSGflLYKEl~rrlk 106 (357)
T PLN02508 39 DMAEFEALLQEFKTDYNQTHFVRNEEFKAAADK-----IQGPLRQIFIEFLERSCTAEFSGFLLYKELGRRLK 106 (357)
T ss_pred hHHHHHHHHHHHHhCccccccccChhhccchhh-----CCHHHHHHHHHHHHhhhhhhcccchHHHHHHHhcc
Confidence 334444444444 5556666666666554433 34444444444445556666666676766666554
No 188
>PF02761 Cbl_N2: CBL proto-oncogene N-terminus, EF hand-like domain; InterPro: IPR014741 Cbl (Casitas B-lineage lymphoma) is an adaptor protein that functions as a negative regulator of many signalling pathways that start from receptors at the cell surface. The N-terminal region of Cbl contains a Cbl-type phosphotyrosine-binding (Cbl-PTB) domain, which is composed of three evolutionarily conserved domains: an N-terminal four-helix bundle (4H) domain, an EF hand-like calcium-binding domain, and a divergent SH2-like domain. The calcium-bound EF-hand wedges between the 4H and SH2 domains, and roughly determines their relative orientation. The Cbl-PTB domain has also been named Cbl N-terminal (Cbl-N) or tyrosine kinase binding (TKB) domain [, ]. The N-terminal 4H domain contains four long alpha-helices. The C and D helices in this domain pack against the adjacent EF-hand-like domain, and a highly conserved loop connecting the A and B helices contacts the SH2-like domain. The EF-hand motif is similar to classical EF-hand proteins. The SH2-like domain retains the general helix-sheet-helix architecture of the SH2 fold, but lacks the secondary beta-sheet, comprising beta-strands D', E and F, and also a prominent BG loop []. This entry represents the EF hand-like domain.; GO: 0005509 calcium ion binding; PDB: 3OP0_A 3PFV_A 3VGO_A 3PLF_B 2Y1M_A 2CBL_A 3BUX_B 3BUN_B 3BUM_B 3OB1_B ....
Probab=25.44 E-value=2.1e+02 Score=18.91 Aligned_cols=48 Identities=15% Similarity=0.048 Sum_probs=31.3
Q ss_pred CCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHH
Q psy11002 129 DGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSV 181 (195)
Q Consensus 129 ~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~ 181 (195)
.--|...+|++.|.+..+... ..+..++-.. +|...++.||-=||--.
T Consensus 20 r~IVPW~~F~~~L~~~h~~~~-~~~~~aLk~T----iDlT~n~~iS~FeFdvF 67 (85)
T PF02761_consen 20 RTIVPWSEFRQALQKVHPISS-GLEAMALKST----IDLTCNDYISNFEFDVF 67 (85)
T ss_dssp -SEEEHHHHHHHHHHHS--SS-HHHHHHHHHH----H-TTSSSEEEHHHHHHH
T ss_pred CeEeeHHHHHHHHHHhcCCCc-hHHHHHHHHH----HhcccCCccchhhhHHH
Confidence 356999999999998433333 3444445454 89999999997665444
No 189
>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea.
Probab=25.35 E-value=93 Score=19.21 Aligned_cols=37 Identities=19% Similarity=0.374 Sum_probs=29.0
Q ss_pred CCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCC
Q psy11002 128 NDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDE 169 (195)
Q Consensus 128 ~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~ 169 (195)
.++.++..++.+.+.. .|..++++.+...++. ++.++
T Consensus 10 ~~~P~g~~~l~~~L~~-~g~~~se~avRrrLr~----me~~G 46 (66)
T PF08461_consen 10 SDKPLGRKQLAEELKL-RGEELSEEAVRRRLRA----MERDG 46 (66)
T ss_pred cCCCCCHHHHHHHHHh-cChhhhHHHHHHHHHH----HHHCC
Confidence 5677999999999987 5888888888777776 66443
No 190
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=25.22 E-value=2.7e+02 Score=20.20 Aligned_cols=52 Identities=17% Similarity=0.306 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHhhh--hCCCCCC----ceeHHHHHHHHHhhHHhhcCCCC
Q psy11002 135 GELFQVLKMMVGNNLKDAQLQQIVDKTILF--ADKDEDG----KINFEEFCSVSTASIITMFPTFN 194 (195)
Q Consensus 135 ~el~~~l~~~~g~~~~~~~~~~l~~~~~~~--~d~~~dg----~Is~~EF~~~l~~~~~~~~~~~~ 194 (195)
.||++++.. +..+..++.+.|.+ .+.+..| -=+|+++++++... .+..|.|.
T Consensus 6 qefk~lIe~-------dp~l~ml~~~Mf~q~~~~~~p~g~~~~i~~~~~mL~~ln~i-~t~AP~~~ 63 (141)
T PF12588_consen 6 QEFKDLIES-------DPRLYMLFTQMFDQPPYNADPTGNPPQIRDYDEMLQLLNHI-MTTAPEFS 63 (141)
T ss_pred HHHHHHHhc-------CHHHHHHHHHHHhCcccccCCCCCccccccHHHHHHHHHHH-HhhCCccc
Confidence 456655543 22444455554444 2223333 24789999888776 55666653
No 191
>PRK00199 ihfB integration host factor subunit beta; Reviewed
Probab=25.07 E-value=82 Score=20.74 Aligned_cols=30 Identities=17% Similarity=0.277 Sum_probs=17.8
Q ss_pred eHHHHHHHHHHHhCCCCCHHHHHHHHHHHhh
Q psy11002 133 SNGELFQVLKMMVGNNLKDAQLQQIVDKTIL 163 (195)
Q Consensus 133 s~~el~~~l~~~~g~~~~~~~~~~l~~~~~~ 163 (195)
+..||.+.+.. -...++..++..+++.++.
T Consensus 2 tk~eli~~ia~-~~~~~s~~~~~~vv~~~~~ 31 (94)
T PRK00199 2 TKSELIERLAA-RNPHLSAKDVENAVKEILE 31 (94)
T ss_pred CHHHHHHHHHH-HcCCCCHHHHHHHHHHHHH
Confidence 56677776664 2344677776666665433
No 192
>PRK01844 hypothetical protein; Provisional
Probab=24.85 E-value=1.6e+02 Score=18.72 Aligned_cols=31 Identities=13% Similarity=0.230 Sum_probs=26.8
Q ss_pred CCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 129 DGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 129 ~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
+=.|+.+-++..+.+ .|.++++..++++.+.
T Consensus 36 NPpine~mir~Mm~Q-MGqkPSekki~Q~m~~ 66 (72)
T PRK01844 36 NPPINEQMLKMMMMQ-MGQKPSQKKINQMMSA 66 (72)
T ss_pred CCCCCHHHHHHHHHH-hCCCccHHHHHHHHHH
Confidence 446999999999999 5999999999988886
No 193
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=24.62 E-value=91 Score=19.06 Aligned_cols=24 Identities=21% Similarity=0.333 Sum_probs=13.3
Q ss_pred eeHHHHHHHHHHHhCCCCCHHHHHH
Q psy11002 132 ISNGELFQVLKMMVGNNLKDAQLQQ 156 (195)
Q Consensus 132 Is~~el~~~l~~~~g~~~~~~~~~~ 156 (195)
|+.++|..+|+. ....++.++++.
T Consensus 30 it~~DF~~Al~~-~kpSVs~~dl~~ 53 (62)
T PF09336_consen 30 ITMEDFEEALKK-VKPSVSQEDLKK 53 (62)
T ss_dssp BCHHHHHHHHHT-CGGSS-HHHHHH
T ss_pred CCHHHHHHHHHH-cCCCCCHHHHHH
Confidence 566666666665 455555555543
No 194
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=24.53 E-value=2.2e+02 Score=18.82 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=21.3
Q ss_pred eeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 131 FISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 131 ~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
.||.+||..+-.. .+..++.++++.++..
T Consensus 14 ~iT~~eLlkyskq-y~i~it~~QA~~I~~~ 42 (85)
T PF11116_consen 14 NITAKELLKYSKQ-YNISITKKQAEQIANI 42 (85)
T ss_pred cCCHHHHHHHHHH-hCCCCCHHHHHHHHHH
Confidence 4677777777777 6777777777777765
No 195
>TIGR01639 P_fal_TIGR01639 Plasmodium falciparum uncharacterized domain TIGR01639. This model represents a conserved sequence region of about 60 amino acids found in over 40 predicted proteins of Plasmodium falciparum. It is not found elsewhere, including closely related species such as Plasmodium yoelii. No member of this family is characterized.
Probab=24.09 E-value=1.8e+02 Score=17.66 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=25.4
Q ss_pred CCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 129 DGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 129 ~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
+-.+|.+||.+.+.. ++..++.+++-.++..
T Consensus 7 s~~lTeEEl~~~i~~-L~~~~~~~dm~~IW~~ 37 (61)
T TIGR01639 7 SKKLSKEELNELINS-LDEIPNRNDMLIIWNQ 37 (61)
T ss_pred hHHccHHHHHHHHHh-hcCCCCHHHHHHHHHH
Confidence 446889999999998 7888888888777776
No 196
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=24.09 E-value=2.7e+02 Score=19.70 Aligned_cols=70 Identities=21% Similarity=0.238 Sum_probs=45.9
Q ss_pred HHHHHHHhhHHcCCC--CCeeeHHHHHHHHHHHhC------CCCC-------HHHHHHHHHHHhhhhCCCCCCceeHHHH
Q psy11002 114 ESKLRFAFRIYDMDN--DGFISNGELFQVLKMMVG------NNLK-------DAQLQQIVDKTILFADKDEDGKINFEEF 178 (195)
Q Consensus 114 ~~~~~~~F~~~D~d~--~G~Is~~el~~~l~~~~g------~~~~-------~~~~~~l~~~~~~~~d~~~dg~Is~~EF 178 (195)
...+..+|+....+. +..++..++..++..+.. .... +.-++.++..+..-+|+++.|.|+--+|
T Consensus 40 l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I~vls~ 119 (127)
T PF09068_consen 40 LSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKIRVLSF 119 (127)
T ss_dssp HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEEEHHHH
T ss_pred HHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCeeehhHH
Confidence 356777888876543 577999999999987430 1111 2455667777788899999999999888
Q ss_pred HHHHH
Q psy11002 179 CSVST 183 (195)
Q Consensus 179 ~~~l~ 183 (195)
...+.
T Consensus 120 KvaL~ 124 (127)
T PF09068_consen 120 KVALI 124 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
No 197
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=24.06 E-value=2.1e+02 Score=19.13 Aligned_cols=38 Identities=24% Similarity=0.340 Sum_probs=21.4
Q ss_pred hCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 145 VGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 145 ~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
++...+..++.+-++.+...+= +|.|+-+||...+...
T Consensus 15 ls~~~~qpe~~~~Vr~LV~~L~---~~~i~~EeF~~~Lq~~ 52 (92)
T smart00549 15 LSNDISQPEVAERVRTLVLGLV---NGTITAEEFTSRLQEA 52 (92)
T ss_pred HhcCCCcchHHHHHHHHHHHHH---hCCCCHHHHHHHHHHH
Confidence 3444553333333333333233 5778899998887765
No 198
>PF13724 DNA_binding_2: DNA-binding domain
Probab=23.82 E-value=38 Score=19.85 Aligned_cols=10 Identities=40% Similarity=1.052 Sum_probs=7.1
Q ss_pred CCccceeeee
Q psy11002 1 MNTYRYRINH 10 (195)
Q Consensus 1 ~~~~~~~~~~ 10 (195)
|..||||+++
T Consensus 1 Mgn~rFRLSd 10 (49)
T PF13724_consen 1 MGNYRFRLSD 10 (49)
T ss_pred CCccceeccc
Confidence 5677887765
No 199
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=23.26 E-value=1.9e+02 Score=19.65 Aligned_cols=62 Identities=13% Similarity=0.156 Sum_probs=35.6
Q ss_pred hhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHH
Q psy11002 121 FRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASII 187 (195)
Q Consensus 121 F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~ 187 (195)
|...|-. ....+.+++.++++. .|.. .+.+-.--...++.+..+. ..++-+|.+++|..++.
T Consensus 27 ~~~idi~-~~~~~~~el~~~~~~-~~~~--~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~ 88 (115)
T cd03032 27 FEERNLF-KQPLTKEELKEILSL-TENG--VEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPS 88 (115)
T ss_pred eEEEecC-CCcchHHHHHHHHHH-hcCC--HHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChh
Confidence 3334432 345789999999987 5532 1211111111344455443 45888999999998843
No 200
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=22.34 E-value=1.6e+02 Score=21.95 Aligned_cols=29 Identities=14% Similarity=0.222 Sum_probs=14.8
Q ss_pred cHHHHHHHHhhcccCCchHHHHHHHhhHHc
Q psy11002 96 FVSEFIQGVSQFSVKGDKESKLRFAFRIYD 125 (195)
Q Consensus 96 ~f~eF~~~~~~~~~~~~~~~~~~~~F~~~D 125 (195)
+-+||+..+..... .-+.++...+.+.|+
T Consensus 2 ~k~efL~~L~~~L~-~lp~~e~~e~l~~Y~ 30 (181)
T PF08006_consen 2 NKNEFLNELEKYLK-KLPEEEREEILEYYE 30 (181)
T ss_pred CHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 45667776666543 233344444444443
No 201
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=22.25 E-value=3.1e+02 Score=19.80 Aligned_cols=33 Identities=12% Similarity=0.080 Sum_probs=21.2
Q ss_pred CCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q psy11002 128 NDGFISNGELFQVLKMMVGNNLKDAQLQQIVDK 160 (195)
Q Consensus 128 ~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~ 160 (195)
..+.|+.+.|+..|..-+...++++-...++..
T Consensus 45 ~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~s 77 (138)
T PF14513_consen 45 PEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLS 77 (138)
T ss_dssp ETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 345899999999999866767777666555554
No 202
>PLN02228 Phosphoinositide phospholipase C
Probab=21.67 E-value=2.6e+02 Score=25.35 Aligned_cols=67 Identities=10% Similarity=0.106 Sum_probs=43.6
Q ss_pred CCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCcccccccccchhcccccHHHHHHHHhhcccC-CchHHHHHHHhhHHcC
Q psy11002 48 RNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHNVDSTFIYYIILYQFVSEFIQGVSQFSVK-GDKESKLRFAFRIYDM 126 (195)
Q Consensus 48 ~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~~d~~~~g~i~~~i~f~eF~~~~~~~~~~-~~~~~~~~~~F~~~D~ 126 (195)
+...++..+|..+..+ +.+ +.++|..++...... ....+.+..+|..|..
T Consensus 21 ~~~~ei~~if~~~s~~--~~~---------------------------t~~~~~~FL~~~Q~~~~~~~~~~~~i~~~~~~ 71 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKM---------------------------SFDELLRFVSEVQGERHAGLDYVQDIFHSVKH 71 (567)
T ss_pred CCcHHHHHHHHHhcCC--Ccc---------------------------CHHHHHHHHHHhcCCccCCHHHHHHHHHHhcc
Confidence 3678999999988643 344 466666666544222 2334567777777754
Q ss_pred C----CCCeeeHHHHHHHHHH
Q psy11002 127 D----NDGFISNGELFQVLKM 143 (195)
Q Consensus 127 d----~~G~Is~~el~~~l~~ 143 (195)
. ..|.++.+.|...|..
T Consensus 72 ~~~~~~~~~~~~~gF~~yl~s 92 (567)
T PLN02228 72 HNVFHHHGLVHLNAFYRYLFS 92 (567)
T ss_pred chhhcccCccCHHHHHHHhcC
Confidence 3 3467999999988864
No 203
>PHA02100 hypothetical protein
Probab=20.97 E-value=2.6e+02 Score=18.78 Aligned_cols=44 Identities=18% Similarity=0.179 Sum_probs=25.0
Q ss_pred hCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhhHHh
Q psy11002 145 VGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTASIIT 188 (195)
Q Consensus 145 ~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~~~~ 188 (195)
+|..++++.++.+..+++..+-..++-+|-..-..+.+...++.
T Consensus 26 lG~~VTpQvlD~wE~elw~am~~~gdqkIGRnaIReviVQYIl~ 69 (112)
T PHA02100 26 LGNRISEEQIDAVENEVWEAATAAGVTGIGRQAIRSVIVQYISE 69 (112)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHH
Confidence 35556666666555555555665666666666555555554443
No 204
>PF09312 SurA_N: SurA N-terminal domain; InterPro: IPR015391 The correct folding of outer membrane proteins in Gram negative bacteria is facilitated by the survival protein SurA []. This entry represents the domain found at the N terminus of the chaperone SurA. It is a helical domain of unknown function. The C terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment. ; PDB: 3RGC_B 2PV3_B 1M5Y_A.
Probab=20.82 E-value=2.9e+02 Score=18.92 Aligned_cols=15 Identities=27% Similarity=0.521 Sum_probs=9.0
Q ss_pred eeHHHHHHHHHhhHH
Q psy11002 173 INFEEFCSVSTASII 187 (195)
Q Consensus 173 Is~~EF~~~l~~~~~ 187 (195)
++|++|..-++..+.
T Consensus 99 ~s~~~~r~~ir~~i~ 113 (118)
T PF09312_consen 99 ISYEEYREQIRKQIL 113 (118)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 677777777776543
No 205
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=20.62 E-value=2.7e+02 Score=22.41 Aligned_cols=53 Identities=8% Similarity=0.096 Sum_probs=30.4
Q ss_pred CCCCeeeHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHh
Q psy11002 127 DNDGFISNGELFQVLKMM-VGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTA 184 (195)
Q Consensus 127 d~~G~Is~~el~~~l~~~-~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~ 184 (195)
.-||.|+..|+. +...+ -...++.++-..+.+. +........++.+|++.+..
T Consensus 67 kADG~Vse~Ei~-~~~~l~~~~~l~~~~r~~a~~l----f~~~k~~~~~l~~~~~~~~~ 120 (267)
T PRK09430 67 KAKGRVTEADIR-IASQLMDRMNLHGEARRAAQQA----FREGKEPDFPLREKLRQFRS 120 (267)
T ss_pred hcCCCcCHHHHH-HHHHHHHHcCCCHHHHHHHHHH----HHHhcccCCCHHHHHHHHHH
Confidence 458899999988 44432 1244676663333222 22223334778888887765
No 206
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=20.49 E-value=3.6e+02 Score=19.89 Aligned_cols=54 Identities=22% Similarity=0.481 Sum_probs=34.0
Q ss_pred CCCCeeeHHHHHHHHHHHhC-----------CCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHH
Q psy11002 127 DNDGFISNGELFQVLKMMVG-----------NNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVST 183 (195)
Q Consensus 127 d~~G~Is~~el~~~l~~~~g-----------~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~ 183 (195)
+.+|.|+...|-.+++.-+| ..++.++++.++..+...+-.++ ++-+++-..+.
T Consensus 95 ~~n~~i~~~~ff~~lQ~~lGdWIT~~~Lkh~n~MSk~Qik~L~~~Ii~~akae~---~dtE~Ye~vwk 159 (175)
T PF04876_consen 95 STNGLIDIGKFFDILQPKLGDWITKNFLKHPNRMSKDQIKTLCEQIIEMAKAES---SDTEHYEKVWK 159 (175)
T ss_pred CcccceeHHHHHHHHHHHhhhHHHHHHHhccchhhHHHHHHHHHHHHHHHhccC---CchHHHHHHHH
Confidence 45778888888888875344 34677788877777666565543 23344444443
No 207
>PRK00285 ihfA integration host factor subunit alpha; Reviewed
Probab=20.44 E-value=95 Score=20.65 Aligned_cols=46 Identities=11% Similarity=0.187 Sum_probs=26.2
Q ss_pred eeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhC--CCCCCceeHHHH
Q psy11002 131 FISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFAD--KDEDGKINFEEF 178 (195)
Q Consensus 131 ~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d--~~~dg~Is~~EF 178 (195)
.++.+||.+.+.. ...++..++..+++.++..+- ....+.|.+..|
T Consensus 2 tmtk~el~~~ia~--~~~~s~~~v~~vl~~~~~~i~~~L~~g~~V~l~gf 49 (99)
T PRK00285 2 TLTKADLAEALFE--KVGLSKREAKELVELFFEEIRDALENGEQVKLSGF 49 (99)
T ss_pred CcCHHHHHHHHHH--HhCcCHHHHHHHHHHHHHHHHHHHHcCCeEEEcCC
Confidence 4677888887775 334677777766666444332 123334554443
No 208
>KOG1264|consensus
Probab=20.26 E-value=5.7e+02 Score=24.66 Aligned_cols=175 Identities=13% Similarity=0.014 Sum_probs=0.0
Q ss_pred eeeeeeeEe--ecCCcccchhhhhhhhhh-hhhhcccCCcccCCCCCHHHHHHHHhhcCcCCCCCcCCCCCCCCCCCccc
Q psy11002 6 YRINHITII--STSSSKCISYIILYPITR-LLFLNKSCHDLIIVVRNEDEFIQGVSQFSVKGDKDIDPLSKPAHFPSIHN 82 (195)
Q Consensus 6 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~F~~~D~~~~g~I~~~el~~~~~~~~~ 82 (195)
|-|.|+|+- ...|....+=..+-...+ ......+.-...-+..-..-+++.+-.+|......|+..++...++.+.-
T Consensus 96 fvil~gt~f~lktls~vatse~e~n~w~~glkw~~~dtl~a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~ 175 (1267)
T KOG1264|consen 96 FVILYGTQFVLKTLSLVATSEEEANNWLSGLKWLHQDTLNAPTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNF 175 (1267)
T ss_pred EEEeeCcEEEeeeeehhhhhhHHHHHHhhcchhhhhhhccCCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceE
Q ss_pred ccccccchhc---------ccccHHHHHHHHhhcccCCchHHHHHH----HhhHHcCCCCCeeeHHHHHHHHHHHhCCCC
Q psy11002 83 VDSTFIYYII---------LYQFVSEFIQGVSQFSVKGDKESKLRF----AFRIYDMDNDGFISNGELFQVLKMMVGNNL 149 (195)
Q Consensus 83 ~d~~~~g~i~---------~~i~f~eF~~~~~~~~~~~~~~~~~~~----~F~~~D~d~~G~Is~~el~~~l~~~~g~~~ 149 (195)
--....-... +.++|++|..+....+....-...+.. +-..=+...--.++..||++.|.. -....
T Consensus 176 k~~~~kfl~e~~ted~~~k~dlsf~~f~~ly~~lmfs~~~a~l~e~~~~~~~~~~~~~d~~vV~~~ef~rFL~~-~Q~e~ 254 (1267)
T KOG1264|consen 176 KVSSAKFLKEKFTEDGARKDDLSFEQFHLLYKKLMFSQQKAILLEFKKDFILGNTDRPDASVVYLQEFQRFLIH-EQQEH 254 (1267)
T ss_pred EechHHHHHHHHhHhhhccccccHHHHHHHHHHHhhccchhhhhcccchhhhcCCCCccceEeeHHHHHHHHHh-hhHHH
Q ss_pred CHHHHHHHHHHHhhhhCCC-----CCCceeHHHHHHHH
Q psy11002 150 KDAQLQQIVDKTILFADKD-----EDGKINFEEFCSVS 182 (195)
Q Consensus 150 ~~~~~~~l~~~~~~~~d~~-----~dg~Is~~EF~~~l 182 (195)
...+.. .++.+.+.+-.| ....+..+||+.+|
T Consensus 255 ~Asdr~-av~~~~r~F~~D~~re~~EPyl~v~EFv~fL 291 (1267)
T KOG1264|consen 255 WASDRN-AVREFMRKFIDDTMRETAEPYLFVDEFVTFL 291 (1267)
T ss_pred hhhHHH-HHHHHHHHHHhhhhhhccCcceeHHHHHHHH
No 209
>KOG4301|consensus
Probab=20.11 E-value=1.2e+02 Score=25.56 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=42.6
Q ss_pred HhhHHcCCCCCeeeHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhhCCCCCCceeHHHHHHHHHhh
Q psy11002 120 AFRIYDMDNDGFISNGELFQVLKMMVGNNLKDAQLQQIVDKTILFADKDEDGKINFEEFCSVSTAS 185 (195)
Q Consensus 120 ~F~~~D~d~~G~Is~~el~~~l~~~~g~~~~~~~~~~l~~~~~~~~d~~~dg~Is~~EF~~~l~~~ 185 (195)
....+|..+.|+++.--.+-++..+.|-++.+ .+.-++. .-.+..|.+.+-.|.+++...
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~gk~~d-klryIfs-----~isds~gim~~i~~~~fl~ev 174 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCGGKIKD-KLRYIFS-----LISDSRGIMQEIQRDQFLHEV 174 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhccchHHH-HHHHHHH-----HHccchHHHHHHHHHHHHHHH
Confidence 44458999999999999999998866655443 3444444 344778888787777777765
Done!