Query psy11003
Match_columns 96
No_of_seqs 133 out of 1518
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 15:43:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5126 FRQ1 Ca2+-binding prot 99.4 5.1E-13 1.1E-17 82.1 3.1 77 19-95 70-151 (160)
2 PF13499 EF-hand_7: EF-hand do 99.4 6E-13 1.3E-17 70.6 2.9 55 41-95 1-63 (66)
3 smart00027 EH Eps15 homology d 99.3 8.5E-12 1.8E-16 71.0 5.6 63 33-95 3-67 (96)
4 KOG0027|consensus 99.3 2.5E-12 5.5E-17 78.6 2.8 77 19-95 59-144 (151)
5 cd05022 S-100A13 S-100A13: S-1 99.3 6.1E-12 1.3E-16 70.8 3.9 59 37-95 5-70 (89)
6 COG5126 FRQ1 Ca2+-binding prot 99.3 6E-12 1.3E-16 77.4 4.1 65 30-95 10-78 (160)
7 KOG0027|consensus 99.2 1.5E-11 3.2E-16 75.2 4.6 62 34-95 2-67 (151)
8 cd05027 S-100B S-100B: S-100B 99.2 1.4E-11 3E-16 69.2 3.7 58 38-95 6-74 (88)
9 cd00052 EH Eps15 homology doma 99.1 1.2E-10 2.7E-15 61.5 3.2 53 43-95 2-56 (67)
10 cd05026 S-100Z S-100Z: S-100Z 99.1 2.7E-10 5.8E-15 64.6 4.4 58 38-95 8-76 (93)
11 KOG0041|consensus 99.1 1.5E-10 3.3E-15 73.2 3.5 63 33-95 92-158 (244)
12 cd00252 SPARC_EC SPARC_EC; ext 99.1 4.3E-10 9.4E-15 66.1 5.1 60 35-95 43-103 (116)
13 cd00213 S-100 S-100: S-100 dom 99.0 2.7E-10 5.9E-15 63.7 3.3 60 36-95 4-74 (88)
14 cd05029 S-100A6 S-100A6: S-100 99.0 3.4E-10 7.4E-15 63.6 3.6 60 36-95 6-74 (88)
15 cd05031 S-100A10_like S-100A10 99.0 4.1E-10 8.8E-15 63.8 3.8 58 38-95 6-74 (94)
16 cd05025 S-100A1 S-100A1: S-100 99.0 4.6E-10 9.9E-15 63.4 4.0 57 39-95 8-75 (92)
17 PTZ00184 calmodulin; Provision 99.0 2.5E-10 5.4E-15 68.5 3.0 63 33-95 4-70 (149)
18 PTZ00183 centrin; Provisional 99.0 6.6E-10 1.4E-14 67.5 4.6 64 32-95 9-76 (158)
19 KOG0034|consensus 98.9 9.5E-10 2.1E-14 69.5 4.0 75 21-95 84-170 (187)
20 cd05023 S-100A11 S-100A11: S-1 98.9 2.8E-09 6.1E-14 60.0 4.8 59 37-95 6-75 (89)
21 KOG0037|consensus 98.9 2.7E-09 5.8E-14 68.2 4.6 94 3-96 72-184 (221)
22 KOG0044|consensus 98.8 3.4E-09 7.4E-14 67.2 3.9 83 13-95 73-170 (193)
23 cd00051 EFh EF-hand, calcium b 98.8 2.4E-09 5.1E-14 54.8 2.7 54 42-95 2-59 (63)
24 PTZ00184 calmodulin; Provision 98.8 6E-09 1.3E-13 62.5 3.9 57 39-95 83-143 (149)
25 PTZ00183 centrin; Provisional 98.8 5E-09 1.1E-13 63.6 2.9 56 40-95 90-149 (158)
26 PF14658 EF-hand_9: EF-hand do 98.8 3.9E-09 8.4E-14 55.9 2.0 53 44-96 2-60 (66)
27 KOG0028|consensus 98.8 9.6E-09 2.1E-13 62.9 3.9 63 33-95 26-92 (172)
28 KOG0031|consensus 98.8 7.6E-09 1.6E-13 63.1 3.3 88 8-95 68-160 (171)
29 KOG0028|consensus 98.7 7.2E-09 1.6E-13 63.5 2.4 75 21-95 86-165 (172)
30 PF13833 EF-hand_8: EF-hand do 98.7 9E-09 2E-13 52.4 1.6 43 53-95 1-48 (54)
31 KOG0034|consensus 98.7 2.6E-08 5.6E-13 63.0 3.9 64 33-96 26-91 (187)
32 PF00036 EF-hand_1: EF hand; 98.6 3.6E-08 7.9E-13 44.3 2.3 27 41-67 1-28 (29)
33 PF10591 SPARC_Ca_bdg: Secrete 98.6 4.8E-08 1E-12 57.2 3.3 64 32-95 46-111 (113)
34 KOG0031|consensus 98.6 4.1E-08 8.9E-13 59.9 2.9 59 33-95 25-87 (171)
35 KOG0030|consensus 98.5 3.8E-08 8.2E-13 59.1 1.3 63 33-95 4-72 (152)
36 PF12763 EF-hand_4: Cytoskelet 98.5 1.8E-07 3.9E-12 54.1 3.8 62 33-95 3-66 (104)
37 KOG0030|consensus 98.5 9.7E-08 2.1E-12 57.4 2.7 67 28-95 76-146 (152)
38 cd05030 calgranulins Calgranul 98.5 2E-07 4.4E-12 52.2 3.6 59 37-95 5-74 (88)
39 PF13405 EF-hand_6: EF-hand do 98.4 2.2E-07 4.7E-12 42.2 2.3 29 41-69 1-31 (31)
40 PLN02964 phosphatidylserine de 98.4 6.8E-07 1.5E-11 65.5 4.8 63 33-95 172-238 (644)
41 PLN02964 phosphatidylserine de 98.3 4.5E-07 9.8E-12 66.4 3.7 60 32-95 135-202 (644)
42 KOG0044|consensus 98.2 1.7E-06 3.7E-11 55.0 3.3 56 40-95 64-123 (193)
43 cd05024 S-100A10 S-100A10: A s 98.2 2E-06 4.4E-11 48.4 3.1 57 38-95 6-71 (91)
44 KOG0036|consensus 98.2 3.5E-06 7.7E-11 58.6 4.7 57 39-95 81-141 (463)
45 KOG0038|consensus 98.1 5.5E-06 1.2E-10 50.5 4.7 68 28-95 16-94 (189)
46 PF13202 EF-hand_5: EF hand; P 98.1 2.5E-06 5.3E-11 36.9 2.0 23 42-64 1-23 (25)
47 PRK12309 transaldolase/EF-hand 98.1 3.3E-06 7.2E-11 58.9 3.4 48 39-95 333-380 (391)
48 PF00036 EF-hand_1: EF hand; 98.1 2.6E-06 5.7E-11 38.1 1.9 22 74-95 2-23 (29)
49 KOG0046|consensus 98.0 7.4E-06 1.6E-10 58.5 3.9 65 30-95 9-80 (627)
50 KOG4223|consensus 98.0 1.2E-05 2.6E-10 54.3 4.6 59 38-96 161-224 (325)
51 KOG0036|consensus 98.0 1.1E-05 2.5E-10 56.1 4.1 61 35-95 9-74 (463)
52 KOG0377|consensus 97.8 9.9E-06 2.2E-10 57.1 2.1 55 41-95 548-610 (631)
53 KOG0037|consensus 97.8 2.7E-05 5.8E-10 50.1 3.5 56 36-94 90-146 (221)
54 KOG4251|consensus 97.7 2.2E-05 4.9E-10 51.7 1.8 57 39-95 100-163 (362)
55 PF13202 EF-hand_5: EF hand; P 97.6 4.9E-05 1.1E-09 32.8 2.1 22 74-95 1-22 (25)
56 KOG0040|consensus 97.5 8.9E-05 1.9E-09 58.7 3.3 63 34-96 2247-2320(2399)
57 KOG0038|consensus 97.5 3.5E-05 7.6E-10 47.0 0.8 56 40-95 108-172 (189)
58 PF13499 EF-hand_7: EF-hand do 97.5 0.00012 2.6E-09 38.3 2.7 55 10-64 6-64 (66)
59 KOG4223|consensus 97.4 0.00015 3.2E-09 49.2 2.7 93 3-95 199-300 (325)
60 smart00054 EFh EF-hand, calciu 97.2 0.00026 5.6E-09 30.0 1.8 23 42-64 2-24 (29)
61 PF14788 EF-hand_10: EF hand; 97.2 0.00027 5.8E-09 35.6 2.0 39 57-95 2-44 (51)
62 PF13833 EF-hand_8: EF-hand do 97.0 0.00068 1.5E-08 34.1 2.3 23 42-64 27-49 (54)
63 PF13405 EF-hand_6: EF-hand do 97.0 0.00073 1.6E-08 30.3 2.0 22 74-95 2-23 (31)
64 KOG1955|consensus 96.8 0.0021 4.6E-08 46.3 4.0 64 33-96 224-289 (737)
65 cd05022 S-100A13 S-100A13: S-1 96.8 0.0014 3E-08 36.8 2.5 29 40-68 47-76 (89)
66 KOG3555|consensus 96.5 0.0037 8.1E-08 43.1 3.5 63 33-95 243-305 (434)
67 cd00051 EFh EF-hand, calcium b 96.4 0.0039 8.4E-08 31.0 2.6 46 19-64 15-60 (63)
68 cd05026 S-100Z S-100Z: S-100Z 96.3 0.0037 8.1E-08 35.2 2.3 60 9-68 15-82 (93)
69 KOG2562|consensus 96.2 0.0042 9E-08 44.2 2.8 58 38-95 276-338 (493)
70 cd05030 calgranulins Calgranul 96.2 0.0068 1.5E-07 33.8 3.2 48 20-67 26-79 (88)
71 cd00052 EH Eps15 homology doma 96.2 0.0083 1.8E-07 31.0 3.2 54 8-64 3-57 (67)
72 cd05023 S-100A11 S-100A11: S-1 96.1 0.0034 7.4E-08 35.2 1.5 49 20-68 27-81 (89)
73 cd05029 S-100A6 S-100A6: S-100 96.1 0.0047 1E-07 34.5 2.1 29 40-68 51-80 (88)
74 smart00054 EFh EF-hand, calciu 96.0 0.0061 1.3E-07 25.4 1.7 22 74-95 2-23 (29)
75 KOG1029|consensus 95.8 0.0054 1.2E-07 46.3 1.8 61 35-95 190-252 (1118)
76 cd00213 S-100 S-100: S-100 dom 95.8 0.015 3.2E-07 32.1 3.1 29 39-67 50-79 (88)
77 KOG4065|consensus 95.7 0.0069 1.5E-07 35.7 1.7 61 33-95 62-140 (144)
78 cd05025 S-100A1 S-100A1: S-100 95.6 0.012 2.6E-07 32.8 2.3 28 40-67 52-80 (92)
79 cd05027 S-100B S-100B: S-100B 95.5 0.01 2.3E-07 33.1 1.8 29 39-67 50-79 (88)
80 KOG4578|consensus 95.3 0.0049 1.1E-07 42.3 0.1 57 39-95 332-393 (421)
81 cd05031 S-100A10_like S-100A10 95.2 0.014 3.1E-07 32.7 1.8 30 39-68 50-80 (94)
82 cd00252 SPARC_EC SPARC_EC; ext 94.7 0.041 8.8E-07 32.4 2.9 25 40-64 80-104 (116)
83 smart00027 EH Eps15 homology d 94.4 0.026 5.7E-07 31.7 1.6 46 16-64 22-68 (96)
84 KOG0042|consensus 94.2 0.019 4.2E-07 42.1 0.8 64 32-95 585-652 (680)
85 cd05024 S-100A10 S-100A10: A s 93.8 0.055 1.2E-06 30.5 2.0 31 38-68 46-77 (91)
86 KOG2643|consensus 93.7 0.009 1.9E-07 42.4 -1.6 44 52-95 211-256 (489)
87 KOG0998|consensus 93.6 0.094 2E-06 40.4 3.5 63 33-95 276-340 (847)
88 KOG4666|consensus 93.4 0.037 8.1E-07 38.1 1.0 56 39-94 295-353 (412)
89 PF08726 EFhand_Ca_insen: Ca2+ 93.2 0.13 2.8E-06 27.5 2.8 51 40-95 6-64 (69)
90 PF09279 EF-hand_like: Phospho 92.7 0.059 1.3E-06 29.4 1.0 54 41-95 1-64 (83)
91 KOG0035|consensus 92.6 0.12 2.7E-06 39.8 2.9 64 32-95 739-811 (890)
92 KOG2243|consensus 92.0 0.1 2.3E-06 42.5 1.9 52 44-95 4061-4115(5019)
93 KOG0377|consensus 92.0 0.16 3.4E-06 36.6 2.6 56 40-95 464-570 (631)
94 PF14658 EF-hand_9: EF-hand do 91.9 0.33 7.1E-06 25.8 3.2 27 40-66 35-63 (66)
95 PRK12309 transaldolase/EF-hand 91.8 0.21 4.6E-06 35.3 3.1 33 34-66 351-384 (391)
96 KOG0751|consensus 91.7 0.17 3.7E-06 36.9 2.6 45 50-94 84-130 (694)
97 KOG2562|consensus 91.7 0.046 1E-06 39.1 -0.2 60 36-95 347-419 (493)
98 PF14788 EF-hand_10: EF hand; 91.6 0.21 4.5E-06 25.2 2.1 26 39-64 20-45 (51)
99 KOG2643|consensus 91.2 0.32 7E-06 34.8 3.5 57 38-95 316-379 (489)
100 KOG0169|consensus 91.1 0.2 4.4E-06 37.9 2.6 60 36-95 132-195 (746)
101 KOG0751|consensus 91.0 0.22 4.8E-06 36.3 2.6 59 38-96 31-98 (694)
102 KOG4251|consensus 89.1 0.6 1.3E-05 31.3 3.3 54 41-94 237-303 (362)
103 PF12763 EF-hand_4: Cytoskelet 88.7 0.65 1.4E-05 26.8 2.9 25 40-64 43-67 (104)
104 PF00046 Homeobox: Homeobox do 83.4 3.8 8.3E-05 20.3 3.9 43 32-79 5-49 (57)
105 KOG1707|consensus 79.7 2.4 5.2E-05 31.7 3.1 33 33-65 308-340 (625)
106 KOG4347|consensus 79.7 2.5 5.4E-05 31.9 3.2 52 41-93 556-611 (671)
107 KOG1029|consensus 79.2 4.9 0.00011 31.3 4.6 60 34-94 10-71 (1118)
108 KOG4004|consensus 78.8 1.6 3.6E-05 28.3 1.8 52 43-94 190-244 (259)
109 PF05517 p25-alpha: p25-alpha 78.5 3 6.6E-05 25.6 2.9 53 43-95 2-64 (154)
110 KOG2871|consensus 77.9 1.7 3.8E-05 30.7 1.9 57 39-95 308-369 (449)
111 KOG4666|consensus 76.3 2.5 5.4E-05 29.5 2.2 51 40-90 259-314 (412)
112 cd00086 homeodomain Homeodomai 74.8 8.4 0.00018 18.9 4.2 43 33-80 6-50 (59)
113 PF12486 DUF3702: ImpA domain 74.4 4.9 0.00011 24.7 3.0 46 36-81 65-115 (148)
114 PF05042 Caleosin: Caleosin re 71.9 2.9 6.4E-05 26.4 1.6 34 40-73 7-41 (174)
115 KOG3866|consensus 71.6 1 2.2E-05 31.2 -0.5 54 43-96 247-320 (442)
116 PF12174 RST: RCD1-SRO-TAF4 (R 71.0 7.7 0.00017 20.7 2.9 44 23-69 11-55 (70)
117 PF09069 EF-hand_3: EF-hand; 70.1 7.1 0.00015 22.0 2.8 54 39-95 2-70 (90)
118 KOG2301|consensus 69.7 1.4 3.1E-05 36.4 -0.1 41 33-73 1410-1451(1592)
119 PF05042 Caleosin: Caleosin re 65.1 13 0.00027 23.6 3.4 54 39-93 95-159 (174)
120 PF03979 Sigma70_r1_1: Sigma-7 64.7 6.6 0.00014 21.4 2.0 41 40-82 7-49 (82)
121 PF00404 Dockerin_1: Dockerin 59.8 7 0.00015 15.8 1.1 15 50-64 1-15 (21)
122 TIGR01565 homeo_ZF_HD homeobox 59.1 21 0.00045 18.4 3.1 38 31-73 5-47 (58)
123 PF08414 NADPH_Ox: Respiratory 58.0 19 0.00042 20.7 3.1 54 38-93 28-85 (100)
124 smart00389 HOX Homeodomain. DN 54.7 25 0.00053 17.0 4.1 43 33-80 6-50 (56)
125 KOG1955|consensus 54.0 14 0.00031 27.5 2.6 27 38-64 263-289 (737)
126 KOG0041|consensus 53.5 23 0.0005 23.3 3.2 38 27-64 121-159 (244)
127 COG5562 Phage envelope protein 51.9 3.2 7E-05 25.1 -0.7 15 81-95 81-95 (137)
128 KOG1707|consensus 50.9 27 0.00058 26.5 3.6 33 32-64 187-219 (625)
129 KOG0040|consensus 50.3 20 0.00043 30.5 3.0 44 40-83 2296-2345(2399)
130 PF07492 Trehalase_Ca-bi: Neut 49.7 12 0.00027 16.6 1.1 18 76-93 3-20 (30)
131 PF09068 EF-hand_2: EF hand; 49.0 16 0.00035 21.7 2.0 24 41-64 98-121 (127)
132 KOG0169|consensus 48.2 35 0.00076 26.5 3.9 53 39-92 171-224 (746)
133 KOG1954|consensus 47.3 21 0.00045 25.9 2.5 53 42-95 446-500 (532)
134 PF09851 SHOCT: Short C-termin 46.6 28 0.0006 15.3 2.8 22 37-64 3-24 (31)
135 PF14513 DAG_kinase_N: Diacylg 42.6 6.2 0.00013 24.0 -0.5 40 55-94 6-54 (138)
136 KOG0843|consensus 42.1 45 0.00097 21.4 3.2 44 30-78 105-150 (197)
137 PF10664 NdhM: Cyanobacterial 41.5 40 0.00087 19.5 2.6 42 35-80 40-85 (108)
138 TIGR02787 codY_Gpos GTP-sensin 40.3 89 0.0019 21.1 4.5 50 29-81 172-222 (251)
139 PF06163 DUF977: Bacterial pro 37.8 29 0.00064 20.8 1.8 36 32-68 3-38 (127)
140 KOG0493|consensus 36.5 53 0.0011 22.5 3.0 44 31-79 250-295 (342)
141 KOG0998|consensus 36.4 24 0.00053 27.8 1.7 58 38-95 9-68 (847)
142 PF14297 DUF4373: Domain of un 36.4 57 0.0012 17.7 2.8 30 33-62 57-86 (87)
143 PF13720 Acetyltransf_11: Udp 35.3 79 0.0017 17.2 3.3 48 32-82 26-75 (83)
144 PF07879 PHB_acc_N: PHB/PHA ac 33.7 27 0.00059 18.4 1.1 19 47-65 10-28 (64)
145 PF03250 Tropomodulin: Tropomo 33.1 65 0.0014 19.9 2.8 24 30-53 20-43 (147)
146 KOG1264|consensus 33.1 43 0.00094 26.8 2.5 62 33-94 136-202 (1267)
147 PF01023 S_100: S-100/ICaBP ty 32.5 65 0.0014 15.4 2.6 27 38-64 4-32 (44)
148 TIGR02574 stabl_TIGR02574 puta 32.4 76 0.0016 16.3 2.7 33 34-66 28-61 (63)
149 PF05383 La: La domain; Inter 31.9 79 0.0017 16.2 3.8 22 44-65 19-40 (61)
150 PF08100 Dimerisation: Dimeris 29.5 48 0.001 16.4 1.6 34 46-79 12-48 (51)
151 KOG2278|consensus 29.4 90 0.002 20.0 3.1 37 49-85 27-64 (207)
152 PF01885 PTS_2-RNA: RNA 2'-pho 29.3 42 0.00091 21.3 1.7 31 50-80 26-60 (186)
153 PRK00819 RNA 2'-phosphotransfe 28.4 70 0.0015 20.3 2.5 41 51-91 28-69 (179)
154 PF06569 DUF1128: Protein of u 27.0 58 0.0013 17.5 1.7 36 32-69 31-67 (71)
155 PF08963 DUF1878: Protein of u 24.8 67 0.0015 18.9 1.8 52 28-79 32-90 (113)
156 PRK05289 UDP-N-acetylglucosami 24.7 2.1E+02 0.0046 19.0 4.4 56 32-89 202-258 (262)
157 COG1043 LpxA Acyl-[acyl carrie 23.7 2.4E+02 0.0053 19.1 4.4 54 31-87 202-257 (260)
158 KOG0488|consensus 23.3 1.3E+02 0.0028 20.8 3.3 45 29-78 174-220 (309)
159 PF01325 Fe_dep_repress: Iron 23.3 1.2E+02 0.0026 15.4 3.4 55 34-94 2-57 (60)
No 1
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.36 E-value=5.1e-13 Score=82.12 Aligned_cols=77 Identities=27% Similarity=0.470 Sum_probs=64.6
Q ss_pred ccCCCchHHHHHhccCC-HHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccc
Q psy11003 19 SSIKPSTELNLSLNKID-ADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKG 93 (96)
Q Consensus 19 ~~~~~~~~l~~~~~~~~-~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~e 93 (96)
..+....++.++..... ....++++++|+.||+|++|+|+..+++. +..+|...+ ++.+++.++.+++|.|+|++
T Consensus 70 ~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~e 149 (160)
T COG5126 70 ETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEE 149 (160)
T ss_pred CccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHH
Confidence 34566677776665553 23467899999999999999999999999 898988764 99999999999999999999
Q ss_pred cc
Q psy11003 94 KL 95 (96)
Q Consensus 94 Fl 95 (96)
|+
T Consensus 150 F~ 151 (160)
T COG5126 150 FK 151 (160)
T ss_pred HH
Confidence 96
No 2
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.35 E-value=6e-13 Score=70.64 Aligned_cols=55 Identities=33% Similarity=0.617 Sum_probs=48.0
Q ss_pred HHHHHHhhhCCCCCCceeHHHHcC-chhcCCC--HH-----HHHHHHHhCCCCCCeeeccccc
Q psy11003 41 RLGKRFRKLDLDNSGALSIDEFMS-LPELQQN--PL-----VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 41 ~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~--~~-----~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+|+.+|+.+|++++|+|+.+|++. +..++.. .. ++.+++.+|.+++|.|+|+||+
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~ 63 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFL 63 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHh
Confidence 578999999999999999999999 7776642 11 7778999999999999999996
No 3
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=99.29 E-value=8.5e-12 Score=70.99 Aligned_cols=63 Identities=19% Similarity=0.298 Sum_probs=57.5
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.++.+++..++.+|..+|++++|.|+.++++. ++..+.... ++.++..+|.+++|.|+|++|+
T Consensus 3 ~ls~~~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~~~~~~ev~~i~~~~d~~~~g~I~~~eF~ 67 (96)
T smart00027 3 AISPEDKAKYEQIFRSLDKNQDGTVTGAQAKPILLKSGLPQTLLAKIWNLADIDNDGELDKDEFA 67 (96)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCCcCHHHHH
Confidence 36788999999999999999999999999999 888776655 9999999999999999999997
No 4
>KOG0027|consensus
Probab=99.27 E-value=2.5e-12 Score=78.57 Aligned_cols=77 Identities=26% Similarity=0.364 Sum_probs=61.9
Q ss_pred ccCCCchHHHHHhccCC---H--HHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCee
Q psy11003 19 SSIKPSTELNLSLNKID---A--DEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEV 89 (96)
Q Consensus 19 ~~~~~~~~l~~~~~~~~---~--~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i 89 (96)
+.+...+++..+..... . ...+.++++|+.||++++|+|+.+||+. |..+|...+ ++.+++.+|.+++|.|
T Consensus 59 g~I~~~eF~~l~~~~~~~~~~~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~~~~~~e~~~mi~~~d~d~dg~i 138 (151)
T KOG0027|consen 59 GTIDFEEFLDLMEKLGEEKTDEEASSEELKEAFRVFDKDGDGFISASELKKVLTSLGEKLTDEECKEMIREVDVDGDGKV 138 (151)
T ss_pred CeEcHHHHHHHHHhhhcccccccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCCcCCHHHHHHHHHhcCCCCCCeE
Confidence 33555566555554332 1 1356899999999999999999999999 888887664 8999999999999999
Q ss_pred eccccc
Q psy11003 90 DFKGKL 95 (96)
Q Consensus 90 ~~~eFl 95 (96)
+|++|+
T Consensus 139 ~f~ef~ 144 (151)
T KOG0027|consen 139 NFEEFV 144 (151)
T ss_pred eHHHHH
Confidence 999996
No 5
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.27 E-value=6.1e-12 Score=70.81 Aligned_cols=59 Identities=19% Similarity=0.309 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhhhCC-CCCCceeHHHHcC-chh-cCCC----HHHHHHHHHhCCCCCCeeeccccc
Q psy11003 37 DEIRRLGKRFRKLDL-DNSGALSIDEFMS-LPE-LQQN----PLVQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 37 ~~~~~l~~~F~~~D~-~~~G~i~~~el~~-l~~-l~~~----~~~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.-+..+..+|+.||+ +++|+|+.+||+. +.+ +|.. ..++.+++.+|.+++|.|+|+||+
T Consensus 5 ~ai~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~ 70 (89)
T cd05022 5 KAIETLVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFW 70 (89)
T ss_pred HHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHH
Confidence 346789999999999 9999999999999 766 7743 349999999999999999999996
No 6
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.26 E-value=6e-12 Score=77.41 Aligned_cols=65 Identities=28% Similarity=0.522 Sum_probs=59.3
Q ss_pred HhccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 30 ~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
..++++++++++++++|..+|++++|+|+.++|.. ++.+|.+++ +.+++..+|. +.+.|+|.+|+
T Consensus 10 ~~~~~t~~qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl 78 (160)
T COG5126 10 TFTQLTEEQIQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFL 78 (160)
T ss_pred hcccCCHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHH
Confidence 34578999999999999999999999999999999 888888765 8999999998 88999999996
No 7
>KOG0027|consensus
Probab=99.23 E-value=1.5e-11 Score=75.19 Aligned_cols=62 Identities=34% Similarity=0.617 Sum_probs=58.0
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 34 IDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
++..++..++.+|..+|++++|+|+..++.. ++.+|.+|+ +..++..+|.+++|.|++++|+
T Consensus 2 ~~~~~~~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~ 67 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFL 67 (151)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence 4677889999999999999999999999999 999999876 9999999999999999999996
No 8
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.22 E-value=1.4e-11 Score=69.24 Aligned_cols=58 Identities=24% Similarity=0.437 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhC-CCCCC-ceeHHHHcC-chh-----cCCCH--H-HHHHHHHhCCCCCCeeeccccc
Q psy11003 38 EIRRLGKRFRKLD-LDNSG-ALSIDEFMS-LPE-----LQQNP--L-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 38 ~~~~l~~~F~~~D-~~~~G-~i~~~el~~-l~~-----l~~~~--~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
-+..++++|+.|| ++++| +|+.++++. |.. +|..+ . ++++++.+|.+++|.|+|++|+
T Consensus 6 ~~~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~ 74 (88)
T cd05027 6 AMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFM 74 (88)
T ss_pred HHHHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 4678999999998 89999 599999999 777 67543 3 9999999999999999999996
No 9
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=99.08 E-value=1.2e-10 Score=61.53 Aligned_cols=53 Identities=28% Similarity=0.350 Sum_probs=47.7
Q ss_pred HHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 43 GKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 43 ~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+++|..+|++++|.|+.+|++. +..+|.... ++.++..+|.+++|.|+|++|+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~g~~~~~~~~i~~~~d~~~~g~i~~~ef~ 56 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKSGLPRSVLAQIWDLADTDKDGKLDKEEFA 56 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCCcCCHHHHH
Confidence 5789999999999999999999 877776444 8999999999999999999996
No 10
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=99.06 E-value=2.7e-10 Score=64.57 Aligned_cols=58 Identities=26% Similarity=0.454 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhhC-CCCCC-ceeHHHHcC-chh-cC----CC--H-HHHHHHHHhCCCCCCeeeccccc
Q psy11003 38 EIRRLGKRFRKLD-LDNSG-ALSIDEFMS-LPE-LQ----QN--P-LVQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 38 ~~~~l~~~F~~~D-~~~~G-~i~~~el~~-l~~-l~----~~--~-~~~~~~~~~d~~~~g~i~~~eFl 95 (96)
-+..+.++|..|| +|++| +|+.+||+. +.. ++ .. . .++.+++.+|.+++|.|+|+||+
T Consensus 8 a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~ 76 (93)
T cd05026 8 AMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFV 76 (93)
T ss_pred HHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHH
Confidence 4678999999999 78998 599999999 644 22 21 2 29999999999999999999996
No 11
>KOG0041|consensus
Probab=99.06 E-value=1.5e-10 Score=73.20 Aligned_cols=63 Identities=22% Similarity=0.413 Sum_probs=59.2
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.++..+++.+...|..+|.+.||+|+..||+. |.++|.+.+ ++.++.++|.|.+|+|+|.||+
T Consensus 92 eFsrkqIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfrefl 158 (244)
T KOG0041|consen 92 EFSRKQIKDAESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFL 158 (244)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHH
Confidence 46789999999999999999999999999999 889998877 8999999999999999999986
No 12
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=99.05 E-value=4.3e-10 Score=66.12 Aligned_cols=60 Identities=22% Similarity=0.275 Sum_probs=51.4
Q ss_pred CHHHHHHHHHHHhhhCCCCCCceeHHHHcCchhcCCC-HHHHHHHHHhCCCCCCeeeccccc
Q psy11003 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQN-PLVQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 35 ~~~~~~~l~~~F~~~D~~~~G~i~~~el~~l~~l~~~-~~~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.+.....+...|..+|.|++|+|+.+|+..+. +... .-+..++..+|.+++|.||++||+
T Consensus 43 ~~~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~ 103 (116)
T cd00252 43 YPMCKDPVGWMFNQLDGNYDGKLSHHELAPIR-LDPNEHCIKPFFESCDLDKDGSISLDEWC 103 (116)
T ss_pred hHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHH-ccchHHHHHHHHHHHCCCCCCCCCHHHHH
Confidence 45677899999999999999999999999844 3322 238899999999999999999996
No 13
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=99.02 E-value=2.7e-10 Score=63.69 Aligned_cols=60 Identities=25% Similarity=0.364 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhhCC--CCCCceeHHHHcC-chh-cCCC-------HHHHHHHHHhCCCCCCeeeccccc
Q psy11003 36 ADEIRRLGKRFRKLDL--DNSGALSIDEFMS-LPE-LQQN-------PLVQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 36 ~~~~~~l~~~F~~~D~--~~~G~i~~~el~~-l~~-l~~~-------~~~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+++++.++.+|..+|+ +++|+|+.+++.. +.. +|.. ..++.++..+|.+++|.|+|++|+
T Consensus 4 ~~~~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~ 74 (88)
T cd00213 4 EKAIETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFL 74 (88)
T ss_pred HHHHHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHH
Confidence 4578899999999999 8999999999999 654 4432 229999999999999999999996
No 14
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=99.02 E-value=3.4e-10 Score=63.57 Aligned_cols=60 Identities=18% Similarity=0.310 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhhhCC-CC-CCceeHHHHcC-ch---hcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 36 ADEIRRLGKRFRKLDL-DN-SGALSIDEFMS-LP---ELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 36 ~~~~~~l~~~F~~~D~-~~-~G~i~~~el~~-l~---~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.+.+..+...|..||. ++ +|+|+.+||+. +. .+|..++ ++++++.+|.+++|.|+|+||+
T Consensus 6 e~~~~~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv 74 (88)
T cd05029 6 DQAIGLLVAIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYV 74 (88)
T ss_pred HHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHH
Confidence 3457789999999998 67 89999999999 75 3565443 9999999999999999999996
No 15
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=99.01 E-value=4.1e-10 Score=63.84 Aligned_cols=58 Identities=21% Similarity=0.383 Sum_probs=48.9
Q ss_pred HHHHHHHHHhhhCC-CC-CCceeHHHHcC-chh-----cCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 38 EIRRLGKRFRKLDL-DN-SGALSIDEFMS-LPE-----LQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 38 ~~~~l~~~F~~~D~-~~-~G~i~~~el~~-l~~-----l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
-...+..+|..+|. ++ +|+|+.+|++. +.. +|..++ ++.+++.+|.+++|.|+|++|+
T Consensus 6 ~~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~ 74 (94)
T cd05031 6 AMESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFV 74 (94)
T ss_pred HHHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 35679999999997 87 69999999999 664 333332 9999999999999999999996
No 16
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=99.01 E-value=4.6e-10 Score=63.36 Aligned_cols=57 Identities=28% Similarity=0.472 Sum_probs=48.6
Q ss_pred HHHHHHHHhhhC-CCCCCc-eeHHHHcC-chh-cCC------CH-HHHHHHHHhCCCCCCeeeccccc
Q psy11003 39 IRRLGKRFRKLD-LDNSGA-LSIDEFMS-LPE-LQQ------NP-LVQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 39 ~~~l~~~F~~~D-~~~~G~-i~~~el~~-l~~-l~~------~~-~~~~~~~~~d~~~~g~i~~~eFl 95 (96)
++.++++|..|| ++++|+ |+.+|++. +.. +|. .. .++.+++.+|.+++|.|+|++|+
T Consensus 8 ~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~ 75 (92)
T cd05025 8 METLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFV 75 (92)
T ss_pred HHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHH
Confidence 567999999997 999995 99999999 754 442 12 29999999999999999999996
No 17
>PTZ00184 calmodulin; Provisional
Probab=99.01 E-value=2.5e-10 Score=68.52 Aligned_cols=63 Identities=32% Similarity=0.591 Sum_probs=36.8
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.++.++++.++..|..+|.+++|.|+.+++.. +..++..+. +..++..+|.+++|.|+|++|+
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 70 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFL 70 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHH
Confidence 34555566666666666666666666666666 444443221 5556666666666666666654
No 18
>PTZ00183 centrin; Provisional
Probab=99.00 E-value=6.6e-10 Score=67.49 Aligned_cols=64 Identities=27% Similarity=0.511 Sum_probs=50.4
Q ss_pred ccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
..+++.++.++..+|..+|++++|.|+..++.. +..+|..+. +..++..+|.+++|.|+|++|+
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~ 76 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFL 76 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHH
Confidence 356778888888888888888888888888888 766654322 7788888888888888888885
No 19
>KOG0034|consensus
Probab=98.95 E-value=9.5e-10 Score=69.47 Aligned_cols=75 Identities=23% Similarity=0.307 Sum_probs=57.0
Q ss_pred CCCchHHHHHhccCCHH-HHHHHHHHHhhhCCCCCCceeHHHHcC-chhc-C--CC--HH-----HHHHHHHhCCCCCCe
Q psy11003 21 IKPSTELNLSLNKIDAD-EIRRLGKRFRKLDLDNSGALSIDEFMS-LPEL-Q--QN--PL-----VQRVIDIFDEDGNGE 88 (96)
Q Consensus 21 ~~~~~~l~~~~~~~~~~-~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l-~--~~--~~-----~~~~~~~~d~~~~g~ 88 (96)
+....+.....-..+.. ..++++=+|+.||.+++|+|+.+|+.+ +..+ + .. .. ++.++.++|.++||.
T Consensus 84 v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~ 163 (187)
T KOG0034|consen 84 VDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGK 163 (187)
T ss_pred cCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCc
Confidence 45555555554443333 336999999999999999999999999 6543 2 12 11 899999999999999
Q ss_pred eeccccc
Q psy11003 89 VDFKGKL 95 (96)
Q Consensus 89 i~~~eFl 95 (96)
|+|+||+
T Consensus 164 IsfeEf~ 170 (187)
T KOG0034|consen 164 ISFEEFC 170 (187)
T ss_pred CcHHHHH
Confidence 9999996
No 20
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.92 E-value=2.8e-09 Score=59.98 Aligned_cols=59 Identities=29% Similarity=0.495 Sum_probs=48.7
Q ss_pred HHHHHHHHHHhh-hCCCCCC-ceeHHHHcC-chhc-----C--CCH-HHHHHHHHhCCCCCCeeeccccc
Q psy11003 37 DEIRRLGKRFRK-LDLDNSG-ALSIDEFMS-LPEL-----Q--QNP-LVQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 37 ~~~~~l~~~F~~-~D~~~~G-~i~~~el~~-l~~l-----~--~~~-~~~~~~~~~d~~~~g~i~~~eFl 95 (96)
..+..+...|.. +|++++| .|+.+||+. +... + ..+ .++.+++.+|.+++|.|+|+||+
T Consensus 6 ~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 6 RCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred HHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 457789999999 7788876 999999999 6432 1 222 39999999999999999999996
No 21
>KOG0037|consensus
Probab=98.89 E-value=2.7e-09 Score=68.17 Aligned_cols=94 Identities=23% Similarity=0.352 Sum_probs=72.1
Q ss_pred ceeehhhhhhhhhhc-cccCCCchHHHHHhc-------cCCHHH-------HHHHHHHHhhhCCCCCCceeHHHHcC-ch
Q psy11003 3 NFVYIHEVSNDIKND-WSSIKPSTELNLSLN-------KIDADE-------IRRLGKRFRKLDLDNSGALSIDEFMS-LP 66 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~-------~~~~~~-------~~~l~~~F~~~D~~~~G~i~~~el~~-l~ 66 (96)
+++...++.++++|. +++...+++...+.. .+..+| ++.++..|+.+|+|++|.|+.+||+. |.
T Consensus 72 g~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~ 151 (221)
T KOG0037|consen 72 GRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALT 151 (221)
T ss_pred ccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHH
Confidence 567788888888865 444555555443332 122333 45789999999999999999999999 99
Q ss_pred hcCCCHH---HHHHHHHhCCCCCCeeecccccC
Q psy11003 67 ELQQNPL---VQRVIDIFDEDGNGEVDFKGKLL 96 (96)
Q Consensus 67 ~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl~ 96 (96)
.+|..+. .+.+++.+|..++|.|.|++|++
T Consensus 152 ~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~ 184 (221)
T KOG0037|consen 152 QLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQ 184 (221)
T ss_pred HcCcCCCHHHHHHHHHHhccccCCceeHHHHHH
Confidence 9998654 78899999988899999999963
No 22
>KOG0044|consensus
Probab=98.85 E-value=3.4e-09 Score=67.16 Aligned_cols=83 Identities=18% Similarity=0.221 Sum_probs=59.4
Q ss_pred hhhhccccCCCchHHHHHhccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chh----cCC---C-----HH--HHHH
Q psy11003 13 DIKNDWSSIKPSTELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPE----LQQ---N-----PL--VQRV 77 (96)
Q Consensus 13 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~----l~~---~-----~~--~~~~ 77 (96)
.-.+.++.+...+.+.++.......-.+++...|+.||.|++|+|+.+|+.. +.. .+. + +. +..+
T Consensus 73 fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~i 152 (193)
T KOG0044|consen 73 FDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKI 152 (193)
T ss_pred hcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHH
Confidence 3344455566666555554433333445677789999999999999999888 422 221 1 22 8999
Q ss_pred HHHhCCCCCCeeeccccc
Q psy11003 78 IDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 78 ~~~~d~~~~g~i~~~eFl 95 (96)
|+.+|.++||.|+++||+
T Consensus 153 f~k~D~n~Dg~lT~eef~ 170 (193)
T KOG0044|consen 153 FSKMDKNKDGKLTLEEFI 170 (193)
T ss_pred HHHcCCCCCCcccHHHHH
Confidence 999999999999999996
No 23
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.85 E-value=2.4e-09 Score=54.79 Aligned_cols=54 Identities=35% Similarity=0.613 Sum_probs=47.3
Q ss_pred HHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 42 LGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 42 l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+..+|..+|.+++|.|+.+++.. +..++.... +..++..++.+++|.|++++|+
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~ 59 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFL 59 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHH
Confidence 57889999999999999999999 777765433 8889999999999999999986
No 24
>PTZ00184 calmodulin; Provisional
Probab=98.80 E-value=6e-09 Score=62.46 Aligned_cols=57 Identities=23% Similarity=0.442 Sum_probs=49.0
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
...+..+|..+|.+++|+|+.+++.. +..++.... +..++..+|.+++|.|+|+||+
T Consensus 83 ~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~ 143 (149)
T PTZ00184 83 EEEIKEAFKVFDRDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADVDGDGQINYEEFV 143 (149)
T ss_pred HHHHHHHHHhhCCCCCCeEeHHHHHHHHHHHCCCCCHHHHHHHHHhcCCCCCCcCcHHHHH
Confidence 35688999999999999999999999 766654332 8889999999999999999996
No 25
>PTZ00183 centrin; Provisional
Probab=98.78 E-value=5e-09 Score=63.59 Aligned_cols=56 Identities=29% Similarity=0.428 Sum_probs=48.7
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCH--H-HHHHHHHhCCCCCCeeeccccc
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP--L-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~--~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+.+..+|..+|++++|+|+.+++.. +..++... . +..++..+|.+++|.|+|++|+
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~l~~~~~~~~~~~~d~~~~g~i~~~ef~ 149 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKELGETITDEELQEMIDEADRNGDGEISEEEFY 149 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 5688999999999999999999999 76666433 2 8899999999999999999985
No 26
>PF14658 EF-hand_9: EF-hand domain
Probab=98.77 E-value=3.9e-09 Score=55.94 Aligned_cols=53 Identities=25% Similarity=0.555 Sum_probs=47.2
Q ss_pred HHHhhhCCCCCCceeHHHHcC-chhcCC-CHH---HHHHHHHhCCCCC-CeeecccccC
Q psy11003 44 KRFRKLDLDNSGALSIDEFMS-LPELQQ-NPL---VQRVIDIFDEDGN-GEVDFKGKLL 96 (96)
Q Consensus 44 ~~F~~~D~~~~G~i~~~el~~-l~~l~~-~~~---~~~~~~~~d~~~~-g~i~~~eFl~ 96 (96)
.+|..+|+++.|.|+.++++. |+.++. .|. ++.+.+++|+++. |.|+++.|++
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~ 60 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLA 60 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHH
Confidence 369999999999999999999 888876 554 9999999999888 9999999973
No 27
>KOG0028|consensus
Probab=98.77 E-value=9.6e-09 Score=62.94 Aligned_cols=63 Identities=17% Similarity=0.454 Sum_probs=56.7
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.+++++.++++.+|..||++++|+|..+||+. ++.+|..+. +.+++...|.++.|.|+|++|+
T Consensus 26 ~l~~~q~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~ 92 (172)
T KOG0028|consen 26 ELTEEQKQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFR 92 (172)
T ss_pred cccHHHHhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHH
Confidence 34677789999999999999999999999977 999998765 8889999999999999999986
No 28
>KOG0031|consensus
Probab=98.76 E-value=7.6e-09 Score=63.06 Aligned_cols=88 Identities=19% Similarity=0.225 Sum_probs=74.3
Q ss_pred hhhhhhhhhccccCCCchHHHHHhccCC-HHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhC
Q psy11003 8 HEVSNDIKNDWSSIKPSTELNLSLNKID-ADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFD 82 (96)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d 82 (96)
.++..++.+.+++|+...+|+.+...++ ....+.+..+|..||+++.|.|..+.++. |...|...+ |+.+++.+.
T Consensus 68 ~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~gDr~~~eEV~~m~r~~p 147 (171)
T KOG0031|consen 68 EELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMGDRFTDEEVDEMYREAP 147 (171)
T ss_pred HHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhcccCCHHHHHHHHHhCC
Confidence 4566677777888899899988887774 22356799999999999999999999999 888887654 999999999
Q ss_pred CCCCCeeeccccc
Q psy11003 83 EDGNGEVDFKGKL 95 (96)
Q Consensus 83 ~~~~g~i~~~eFl 95 (96)
.+..|.++|..|+
T Consensus 148 ~d~~G~~dy~~~~ 160 (171)
T KOG0031|consen 148 IDKKGNFDYKAFT 160 (171)
T ss_pred cccCCceeHHHHH
Confidence 9999999999886
No 29
>KOG0028|consensus
Probab=98.72 E-value=7.2e-09 Score=63.47 Aligned_cols=75 Identities=25% Similarity=0.319 Sum_probs=62.0
Q ss_pred CCCchHHHHHhccCCHH-HHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 21 IKPSTELNLSLNKIDAD-EIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 21 ~~~~~~l~~~~~~~~~~-~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+....+...+...+... ..++++.+|+.+|-|++|.|+..+|+. ...||++.+ ++.++.++|.+++|.|+-++|+
T Consensus 86 i~fe~f~~~mt~k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvakeLgenltD~El~eMIeEAd~d~dgevneeEF~ 165 (172)
T KOG0028|consen 86 ITFEDFRRVMTVKLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKELGENLTDEELMEMIEEADRDGDGEVNEEEFI 165 (172)
T ss_pred echHHHHHHHHHHHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHHhCccccHHHHHHHHHHhcccccccccHHHHH
Confidence 55555555544444322 467899999999999999999999999 789999876 8999999999999999999995
No 30
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.68 E-value=9e-09 Score=52.44 Aligned_cols=43 Identities=30% Similarity=0.550 Sum_probs=36.6
Q ss_pred CCCceeHHHHcC-chhcCCC-H--H-HHHHHHHhCCCCCCeeeccccc
Q psy11003 53 NSGALSIDEFMS-LPELQQN-P--L-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 53 ~~G~i~~~el~~-l~~l~~~-~--~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.+|.|+.++|+. +..+|.. + . ++.++..+|.+++|.|+|+||+
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~ 48 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFI 48 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHH
Confidence 379999999999 8666655 3 3 9999999999999999999996
No 31
>KOG0034|consensus
Probab=98.68 E-value=2.6e-08 Score=63.01 Aligned_cols=64 Identities=52% Similarity=0.881 Sum_probs=58.8
Q ss_pred cCCHHHHHHHHHHHhhhCCC-CCCceeHHHHcCchhcCCCHHHHHHHHHhCCCCCCe-eecccccC
Q psy11003 33 KIDADEIRRLGKRFRKLDLD-NSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGE-VDFKGKLL 96 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~-~~G~i~~~el~~l~~l~~~~~~~~~~~~~d~~~~g~-i~~~eFl~ 96 (96)
.++..|+..|+..|..+|++ ++|+++.+++..++.+..+|..+++++.++.+++|. |+|++|+.
T Consensus 26 ~fs~~EI~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~ 91 (187)
T KOG0034|consen 26 QFSANEIERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVR 91 (187)
T ss_pred ccCHHHHHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHH
Confidence 48999999999999999999 999999999999888888888999999999988887 99999973
No 32
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.61 E-value=3.6e-08 Score=44.29 Aligned_cols=27 Identities=30% Similarity=0.655 Sum_probs=23.0
Q ss_pred HHHHHHhhhCCCCCCceeHHHHcC-chh
Q psy11003 41 RLGKRFRKLDLDNSGALSIDEFMS-LPE 67 (96)
Q Consensus 41 ~l~~~F~~~D~~~~G~i~~~el~~-l~~ 67 (96)
+++.+|+.+|+|++|+|+.+||+. +.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 467899999999999999999988 554
No 33
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=98.60 E-value=4.8e-08 Score=57.24 Aligned_cols=64 Identities=17% Similarity=0.227 Sum_probs=46.5
Q ss_pred ccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcCchhcCCCHH--HHHHHHHhCCCCCCeeeccccc
Q psy11003 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL--VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~l~~l~~~~~--~~~~~~~~d~~~~g~i~~~eFl 95 (96)
..........+...|..+|.|++|.++.+|+..+...-.++. ++.+++.+|.++||.|+..||.
T Consensus 46 ~~~~~~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 46 SSSYSECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPLMPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHTGGGGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTTSTTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred ccchhhhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHHhhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 334455667889999999999999999999999655223333 8999999999999999999985
No 34
>KOG0031|consensus
Probab=98.59 E-value=4.1e-08 Score=59.89 Aligned_cols=59 Identities=17% Similarity=0.359 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.+++.|+++++++|..+|.|++|.|..++|+. +..+|..++ ++.++.+ ..|.|+|--|+
T Consensus 25 mf~q~QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~E----a~gPINft~FL 87 (171)
T KOG0031|consen 25 MFDQSQIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMKE----APGPINFTVFL 87 (171)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHh----CCCCeeHHHHH
Confidence 46889999999999999999999999999999 888886643 5555543 34566665554
No 35
>KOG0030|consensus
Probab=98.52 E-value=3.8e-08 Score=59.12 Aligned_cols=63 Identities=24% Similarity=0.334 Sum_probs=52.6
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCC--CCCeeeccccc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDED--GNGEVDFKGKL 95 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~--~~g~i~~~eFl 95 (96)
.++++++.+++++|..||..++|.|+.++... |+.+|.+|+ +.+.+.....+ +-..|+|++|+
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fL 72 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRTGDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFL 72 (152)
T ss_pred ccCcchHHHHHHHHHHHhccCcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHH
Confidence 35677889999999999999999999999999 999999997 66666655554 34688998885
No 36
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=98.50 E-value=1.8e-07 Score=54.05 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=53.2
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.+++++.+++..+|..+|+ ++|+|+-++.+. +...+.... +..++..+|.+++|.++++||+
T Consensus 3 ~ls~~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~ 66 (104)
T PF12763_consen 3 KLSPEEKQKYDQIFQSLDP-QDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFA 66 (104)
T ss_dssp --SCCHHHHHHHHHHCTSS-STTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHH
Confidence 4577889999999999996 589999999999 777777765 9999999999999999999996
No 37
>KOG0030|consensus
Probab=98.49 E-value=9.7e-08 Score=57.37 Aligned_cols=67 Identities=18% Similarity=0.292 Sum_probs=53.9
Q ss_pred HHHhccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 28 NLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
..++.+-.+-..+.+.+..+.||++++|.|+..+|+. |..+|..++ ++.++. .-.|++|.|+|++|+
T Consensus 76 q~vaknk~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttlGekl~eeEVe~Lla-g~eD~nG~i~YE~fV 146 (152)
T KOG0030|consen 76 QQVAKNKDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTLGEKLTEEEVEELLA-GQEDSNGCINYEAFV 146 (152)
T ss_pred HHHHhccccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHHHhhccHHHHHHHHc-cccccCCcCcHHHHH
Confidence 3444443344567899999999999999999999999 899998876 777776 455788999999997
No 38
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.47 E-value=2e-07 Score=52.21 Aligned_cols=59 Identities=19% Similarity=0.385 Sum_probs=48.5
Q ss_pred HHHHHHHHHHhhhCCC--CCCceeHHHHcC-ch-hcCCC-------HHHHHHHHHhCCCCCCeeeccccc
Q psy11003 37 DEIRRLGKRFRKLDLD--NSGALSIDEFMS-LP-ELQQN-------PLVQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 37 ~~~~~l~~~F~~~D~~--~~G~i~~~el~~-l~-~l~~~-------~~~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+-+..+...|..++.. .+|.|+.+||+. +. .++.. ..++.+++.+|.+++|.|+|++|+
T Consensus 5 ~~i~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~ 74 (88)
T cd05030 5 KAIETIINVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFL 74 (88)
T ss_pred HHHHHHHHHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHH
Confidence 3467889999999865 489999999999 64 44432 229999999999999999999996
No 39
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=98.42 E-value=2.2e-07 Score=42.20 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=24.4
Q ss_pred HHHHHHhhhCCCCCCceeHHHHcC-ch-hcC
Q psy11003 41 RLGKRFRKLDLDNSGALSIDEFMS-LP-ELQ 69 (96)
Q Consensus 41 ~l~~~F~~~D~~~~G~i~~~el~~-l~-~l~ 69 (96)
+++.+|+.+|++++|+|+.+|++. +. .+|
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~~~lG 31 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILRKSLG 31 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHHHHTT
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHHHhcC
Confidence 478999999999999999999999 76 454
No 40
>PLN02964 phosphatidylserine decarboxylase
Probab=98.36 E-value=6.8e-07 Score=65.49 Aligned_cols=63 Identities=19% Similarity=0.222 Sum_probs=48.2
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCH--H-HHHHHHHhCCCCCCeeeccccc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP--L-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~--~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
..+..+...+.++|..+|.+++|.|+.+||.. +..++... . +..+|+.+|.+++|.|+++||.
T Consensus 172 ~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~ 238 (644)
T PLN02964 172 DPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELA 238 (644)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHH
Confidence 34455555688888888888899999999888 66665322 2 8888888898888999888874
No 41
>PLN02964 phosphatidylserine decarboxylase
Probab=98.35 E-value=4.5e-07 Score=66.38 Aligned_cols=60 Identities=22% Similarity=0.330 Sum_probs=51.3
Q ss_pred ccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcC-CCHH------HHHHHHHhCCCCCCeeeccccc
Q psy11003 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQ-QNPL------VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~-~~~~------~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+.++.+|+++++++|..+|++++|.+ +.. +..+| ..++ ++++++.+|.+++|.|+++||+
T Consensus 135 t~f~~kqi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl 202 (644)
T PLN02964 135 FDFVTQEPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFS 202 (644)
T ss_pred hhccHHHHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHH
Confidence 56788999999999999999999997 666 67777 2332 6899999999999999999996
No 42
>KOG0044|consensus
Probab=98.19 E-value=1.7e-06 Score=54.98 Aligned_cols=56 Identities=21% Similarity=0.383 Sum_probs=29.6
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-chhc-CCCHH--HHHHHHHhCCCCCCeeeccccc
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-LPEL-QQNPL--VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l~~l-~~~~~--~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.-...+|+.+|.+++|.|+..|+.. +..+ ...+. ++..|+.+|.+++|.|+++|++
T Consensus 64 ~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rGt~eekl~w~F~lyD~dgdG~It~~Eml 123 (193)
T KOG0044|consen 64 KYAELVFRTFDKNKDGTIDFLEFICALSLTSRGTLEEKLKWAFRLYDLDGDGYITKEEML 123 (193)
T ss_pred HHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCCcHHHHhhhhheeecCCCCceEcHHHHH
Confidence 3445556666666666666666555 4222 22222 4455555666666666665543
No 43
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.18 E-value=2e-06 Score=48.43 Aligned_cols=57 Identities=19% Similarity=0.457 Sum_probs=45.6
Q ss_pred HHHHHHHHHhhhCCCCCCceeHHHHcC-c-hhcC------CCHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 38 EIRRLGKRFRKLDLDNSGALSIDEFMS-L-PELQ------QNPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 38 ~~~~l~~~F~~~D~~~~G~i~~~el~~-l-~~l~------~~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
-+..+...|..|.. ..|.++..||+. | .+++ ..+. ++++++..|.++||.|+|+||+
T Consensus 6 ai~~lI~~FhkYaG-~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~ 71 (91)
T cd05024 6 SMEKMMLTFHKFAG-EKNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFF 71 (91)
T ss_pred HHHHHHHHHHHHcC-CCCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHH
Confidence 46778899999984 367999999999 5 2222 1233 9999999999999999999996
No 44
>KOG0036|consensus
Probab=98.16 E-value=3.5e-06 Score=58.57 Aligned_cols=57 Identities=21% Similarity=0.381 Sum_probs=52.0
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
..++.++|...|.++||.|..+|+.. +..+|.+.+ +.++++.+|+++++.|+++||-
T Consensus 81 E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~gi~l~de~~~k~~e~~d~~g~~~I~~~e~r 141 (463)
T KOG0036|consen 81 ELELYRIFQSIDLEHDGKIDPNEIWRYLKDLGIQLSDEKAAKFFEHMDKDGKATIDLEEWR 141 (463)
T ss_pred HHHHHHHHhhhccccCCccCHHHHHHHHHHhCCccCHHHHHHHHHHhccCCCeeeccHHHH
Confidence 35799999999999999999999999 999998775 8889999999999999999873
No 45
>KOG0038|consensus
Probab=98.15 E-value=5.5e-06 Score=50.49 Aligned_cols=68 Identities=31% Similarity=0.572 Sum_probs=59.5
Q ss_pred HHHhccCCHHHHHHHHHHHhhhCCCC-----CC------ceeHHHHcCchhcCCCHHHHHHHHHhCCCCCCeeeccccc
Q psy11003 28 NLSLNKIDADEIRRLGKRFRKLDLDN-----SG------ALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~F~~~D~~~-----~G------~i~~~el~~l~~l~~~~~~~~~~~~~d~~~~g~i~~~eFl 95 (96)
...|+.++.+++-+++..|..+.|+- .| .++.+.+.+|+++..+|.-+++...++.||.|.++|++|+
T Consensus 16 YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~ri~e~FSeDG~GnlsfddFl 94 (189)
T KOG0038|consen 16 YQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRRICEVFSEDGRGNLSFDDFL 94 (189)
T ss_pred hcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHHHHHHhccCCCCcccHHHHH
Confidence 35688999999999999999998742 33 6788888889999999999999999999999999999997
No 46
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=98.10 E-value=2.5e-06 Score=36.93 Aligned_cols=23 Identities=35% Similarity=0.697 Sum_probs=18.6
Q ss_pred HHHHHhhhCCCCCCceeHHHHcC
Q psy11003 42 LGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 42 l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
|++.|+.+|.|++|.|+.+|+.+
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHH
Confidence 46788888888888888888765
No 47
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.09 E-value=3.3e-06 Score=58.86 Aligned_cols=48 Identities=23% Similarity=0.401 Sum_probs=43.1
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcCchhcCCCHHHHHHHHHhCCCCCCeeeccccc
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~l~~l~~~~~~~~~~~~~d~~~~g~i~~~eFl 95 (96)
...+..+|+.+|.+++|+|+.+|+.. .+.+|..+|.+++|.|+++||.
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~---------~~~~F~~~D~d~DG~Is~eEf~ 380 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG---------SDAVFDALDLNHDGKITPEEMR 380 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH---------HHHHHHHhCCCCCCCCcHHHHH
Confidence 45689999999999999999999942 5788999999999999999995
No 48
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.08 E-value=2.6e-06 Score=38.13 Aligned_cols=22 Identities=32% Similarity=0.694 Sum_probs=20.5
Q ss_pred HHHHHHHhCCCCCCeeeccccc
Q psy11003 74 VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 74 ~~~~~~~~d~~~~g~i~~~eFl 95 (96)
++.+|+.+|.+++|.|+++||+
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~ 23 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFK 23 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHH
Confidence 5789999999999999999996
No 49
>KOG0046|consensus
Probab=98.01 E-value=7.4e-06 Score=58.52 Aligned_cols=65 Identities=22% Similarity=0.450 Sum_probs=55.6
Q ss_pred HhccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCH----H--HHHHHHHhCCCCCCeeeccccc
Q psy11003 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP----L--VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 30 ~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~----~--~~~~~~~~d~~~~g~i~~~eFl 95 (96)
..+++|..+...+++.|...| +++|+|+..++.. +.+.+... . ++.++...+.+.+|.|+|++|+
T Consensus 9 ~~~~~tq~El~~l~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~ 80 (627)
T KOG0046|consen 9 LQSQLTQEELRELKEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFV 80 (627)
T ss_pred hcccccHHHHHHHHHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHH
Confidence 345789999999999999999 9999999999998 65544332 2 8888899999999999999996
No 50
>KOG4223|consensus
Probab=98.00 E-value=1.2e-05 Score=54.30 Aligned_cols=59 Identities=27% Similarity=0.541 Sum_probs=49.6
Q ss_pred HHHHHHHHHhhhCCCCCCceeHHHHcC-c-hhcCCCHH---HHHHHHHhCCCCCCeeecccccC
Q psy11003 38 EIRRLGKRFRKLDLDNSGALSIDEFMS-L-PELQQNPL---VQRVIDIFDEDGNGEVDFKGKLL 96 (96)
Q Consensus 38 ~~~~l~~~F~~~D~~~~G~i~~~el~~-l-~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl~ 96 (96)
.+.+-...|+..|.|++|.++.+||.. | |+-...+. +...+...|.+++|+|+++||+.
T Consensus 161 m~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfig 224 (325)
T KOG4223|consen 161 MIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIG 224 (325)
T ss_pred HHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHh
Confidence 355678999999999999999999999 6 55444443 78888999999999999999973
No 51
>KOG0036|consensus
Probab=97.96 E-value=1.1e-05 Score=56.10 Aligned_cols=61 Identities=25% Similarity=0.462 Sum_probs=51.0
Q ss_pred CHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCC-H--H-HHHHHHHhCCCCCCeeeccccc
Q psy11003 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQN-P--L-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 35 ~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~-~--~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.++...+++..|..+|.+++|.++..++.+ +..+..+ + . ...++..+|.+.+|.++|+||.
T Consensus 9 ~~er~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~ 74 (463)
T KOG0036|consen 9 DEERDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFK 74 (463)
T ss_pred cHHHHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHH
Confidence 455567899999999999999999999998 6655433 2 2 7889999999999999999984
No 52
>KOG0377|consensus
Probab=97.83 E-value=9.9e-06 Score=57.08 Aligned_cols=55 Identities=29% Similarity=0.456 Sum_probs=45.7
Q ss_pred HHHHHHhhhCCCCCCceeHHHHcC-chhcCCC----HH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 41 RLGKRFRKLDLDNSGALSIDEFMS-LPELQQN----PL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 41 ~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~----~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.|..+|+.+|.|++|.|+.+||++ +.-++.. .+ +-++-+.+|.++||.|++.||+
T Consensus 548 ~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfL 610 (631)
T KOG0377|consen 548 SLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFL 610 (631)
T ss_pred hHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHH
Confidence 478899999999999999999999 5443322 21 7778888999999999999996
No 53
>KOG0037|consensus
Probab=97.80 E-value=2.7e-05 Score=50.09 Aligned_cols=56 Identities=25% Similarity=0.353 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHHHHHHHHHhCCCCCCeeecccc
Q psy11003 36 ADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPLVQRVIDIFDEDGNGEVDFKGK 94 (96)
Q Consensus 36 ~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~~~~~~~~~d~~~~g~i~~~eF 94 (96)
..-++.++.+...||.+++|.|..+||+. ...+.. |+.+|+.+|.|++|.|+..|+
T Consensus 90 ~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i~~---Wr~vF~~~D~D~SG~I~~sEL 146 (221)
T KOG0037|consen 90 PFSIETCRLMISMFDRDNSGTIGFKEFKALWKYINQ---WRNVFRTYDRDRSGTIDSSEL 146 (221)
T ss_pred CCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHHH---HHHHHHhcccCCCCcccHHHH
Confidence 33455566667777777777777777777 444433 777777788888887777664
No 54
>KOG4251|consensus
Probab=97.68 E-value=2.2e-05 Score=51.69 Aligned_cols=57 Identities=21% Similarity=0.316 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcC-ch-hcCCCHH-----HHHHHHHhCCCCCCeeeccccc
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMS-LP-ELQQNPL-----VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~-l~-~l~~~~~-----~~~~~~~~d~~~~g~i~~~eFl 95 (96)
-.++..+|...|.+.+|+|+..|+++ +. ....+.. -+-.|+..|++++|.|+|+||-
T Consensus 100 rrklmviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 100 RRKLMVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHHHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 46799999999999999999999999 53 3333222 4567888999999999999984
No 55
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.64 E-value=4.9e-05 Score=32.76 Aligned_cols=22 Identities=27% Similarity=0.638 Sum_probs=19.6
Q ss_pred HHHHHHHhCCCCCCeeeccccc
Q psy11003 74 VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 74 ~~~~~~~~d~~~~g~i~~~eFl 95 (96)
++.+|+.+|.+++|.|+++||.
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~ 22 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQ 22 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHH
Confidence 4678999999999999999984
No 56
>KOG0040|consensus
Probab=97.51 E-value=8.9e-05 Score=58.65 Aligned_cols=63 Identities=19% Similarity=0.452 Sum_probs=56.4
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCH----------HHHHHHHHhCCCCCCeeecccccC
Q psy11003 34 IDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP----------LVQRVIDIFDEDGNGEVDFKGKLL 96 (96)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~----------~~~~~~~~~d~~~~g~i~~~eFl~ 96 (96)
.|.++..++.-+|..||++.+|.++-++|+. |+.+|++. +++.++..+|++.+|.|+..+|++
T Consensus 2247 VtEe~L~EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~vDP~r~G~Vsl~dY~a 2320 (2399)
T KOG0040|consen 2247 VTEEQLKEFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLVDPNRDGYVSLQDYMA 2320 (2399)
T ss_pred CCHHHHHHHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhcCCCCcCcccHHHHHH
Confidence 4778889999999999999999999999999 89888765 378899999999999999999863
No 57
>KOG0038|consensus
Probab=97.50 E-value=3.5e-05 Score=47.03 Aligned_cols=56 Identities=23% Similarity=0.356 Sum_probs=45.3
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-chhcC---CCHH-----HHHHHHHhCCCCCCeeeccccc
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-LPELQ---QNPL-----VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~---~~~~-----~~~~~~~~d~~~~g~i~~~eFl 95 (96)
-+..=+|+.+|=|++++|...++.. +.++- .... .++++.+.|.||+|++++.||-
T Consensus 108 lK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe 172 (189)
T KOG0038|consen 108 LKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFE 172 (189)
T ss_pred hhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHH
Confidence 3556689999999999999999988 65542 2222 6889999999999999999983
No 58
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.48 E-value=0.00012 Score=38.31 Aligned_cols=55 Identities=22% Similarity=0.232 Sum_probs=36.0
Q ss_pred hhhhhhhccccCCCchHHHHHhccC---CHHH-HHHHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 10 VSNDIKNDWSSIKPSTELNLSLNKI---DADE-IRRLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 10 ~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~-~~~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
|...-.+.++.+..++....+.... +.++ .+.+..+|+.+|++++|.|+.+|+..
T Consensus 6 F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~ 64 (66)
T PF13499_consen 6 FKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLN 64 (66)
T ss_dssp HHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHH
T ss_pred HHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhc
Confidence 4433334444455555555444333 2444 34678889999999999999999875
No 59
>KOG4223|consensus
Probab=97.38 E-value=0.00015 Score=49.18 Aligned_cols=93 Identities=18% Similarity=0.223 Sum_probs=63.6
Q ss_pred ceeehhhhhhhhhhccccCCCchHHHHHhccCC----HH-HHHHHHHHHhhhCCCCCCceeHHHHcC-c-hhcCCCHH--
Q psy11003 3 NFVYIHEVSNDIKNDWSSIKPSTELNLSLNKID----AD-EIRRLGKRFRKLDLDNSGALSIDEFMS-L-PELQQNPL-- 73 (96)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~-~~~~l~~~F~~~D~~~~G~i~~~el~~-l-~~l~~~~~-- 73 (96)
-+|+.+.+..+-+|..+.+...+.+.-+...-. ++ -+.+-...+...|+|++|+++.+|++. + +.--....
T Consensus 199 ~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~epeWv~~Ere~F~~~~DknkDG~L~~dEl~~WI~P~~~d~A~~E 278 (325)
T KOG4223|consen 199 DIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEPEWVLTEREQFFEFRDKNKDGKLDGDELLDWILPSEQDHAKAE 278 (325)
T ss_pred HHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCcccccccHHHHHHHhhcCCCCccCHHHHhcccCCCCccHHHHH
Confidence 345566666666677777777766654443331 11 122334667788999999999999999 4 44322232
Q ss_pred HHHHHHHhCCCCCCeeeccccc
Q psy11003 74 VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 74 ~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.+.++...|.+++|++|++|-+
T Consensus 279 A~hL~~eaD~dkD~kLs~eEIl 300 (325)
T KOG4223|consen 279 ARHLLHEADEDKDGKLSKEEIL 300 (325)
T ss_pred HHHHhhhhccCccccccHHHHh
Confidence 8889999999999999998854
No 60
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=97.23 E-value=0.00026 Score=29.98 Aligned_cols=23 Identities=35% Similarity=0.670 Sum_probs=19.9
Q ss_pred HHHHHhhhCCCCCCceeHHHHcC
Q psy11003 42 LGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 42 l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
++.+|..+|.+++|.|+.+++..
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~ 24 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKD 24 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHH
Confidence 56788999999999999999887
No 61
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.23 E-value=0.00027 Score=35.61 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=25.4
Q ss_pred eeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 57 LSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 57 i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
++.+|++. |+.++..+. ...+|+.+|..++|.+..+||.
T Consensus 2 msf~Evk~lLk~~NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~ 44 (51)
T PF14788_consen 2 MSFKEVKKLLKMMNIEMDDEYARQLFQECDKSQSGRLEGEEFE 44 (51)
T ss_dssp BEHHHHHHHHHHTT----HHHHHHHHHHH-SSSSSEBEHHHHH
T ss_pred CCHHHHHHHHHHHccCcCHHHHHHHHHHhcccCCCCccHHHHH
Confidence 56777777 676666554 7778888888888888777764
No 62
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.00 E-value=0.00068 Score=34.07 Aligned_cols=23 Identities=43% Similarity=0.821 Sum_probs=21.8
Q ss_pred HHHHHhhhCCCCCCceeHHHHcC
Q psy11003 42 LGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 42 l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
+..+|..+|.+++|+|+.+||..
T Consensus 27 ~~~l~~~~D~~~~G~I~~~EF~~ 49 (54)
T PF13833_consen 27 VDRLFREFDTDGDGYISFDEFIS 49 (54)
T ss_dssp HHHHHHHHTTSSSSSEEHHHHHH
T ss_pred HHHHHHhcccCCCCCCCHHHHHH
Confidence 88999999999999999999987
No 63
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.96 E-value=0.00073 Score=30.29 Aligned_cols=22 Identities=32% Similarity=0.724 Sum_probs=18.9
Q ss_pred HHHHHHHhCCCCCCeeeccccc
Q psy11003 74 VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 74 ~~~~~~~~d~~~~g~i~~~eFl 95 (96)
++.+|+.+|.+++|.|+.+||.
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~ 23 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELR 23 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHH
Confidence 5688999999999999999985
No 64
>KOG1955|consensus
Probab=96.79 E-value=0.0021 Score=46.27 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=54.9
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHHhCCCCCCeeecccccC
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDGNGEVDFKGKLL 96 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~d~~~~g~i~~~eFl~ 96 (96)
+++++|-+.+.+-|+.+-+|-+|+|+-+--+. +.+-..... +..+|..+|.+.||.++..|||+
T Consensus 224 ~IT~EQReYYvnQFrtvQpDp~gfisGsaAknFFtKSklpi~ELshIWeLsD~d~DGALtL~EFcA 289 (737)
T KOG1955|consen 224 QITPEQREYYVNQFRTVQPDPHGFISGSAAKNFFTKSKLPIEELSHIWELSDVDRDGALTLSEFCA 289 (737)
T ss_pred ccCHHHHHHHHhhhhcccCCcccccccHHHHhhhhhccCchHHHHHHHhhcccCccccccHHHHHh
Confidence 46889999999999999999999999888888 555444443 88899999999999999999985
No 65
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.77 E-value=0.0014 Score=36.83 Aligned_cols=29 Identities=31% Similarity=0.621 Sum_probs=25.9
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-chhc
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-LPEL 68 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l~~l 68 (96)
..+.++++.+|.|++|.|+++||.. +..+
T Consensus 47 ~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 47 EGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 6799999999999999999999988 6554
No 66
>KOG3555|consensus
Probab=96.48 E-value=0.0037 Score=43.12 Aligned_cols=63 Identities=17% Similarity=0.140 Sum_probs=52.7
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcCchhcCCCHHHHHHHHHhCCCCCCeeeccccc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~l~~l~~~~~~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.+.+.-...+..+|..+|.+.+|.++.+|+..+-.-+.++=++.+|..+|...||.|+-.||+
T Consensus 243 s~~p~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~ldknE~CikpFfnsCD~~kDg~iS~~EWC 305 (434)
T KOG3555|consen 243 SILPICKDSLGWMFNKLDTNYDLLLDQSELRAIELDKNEACIKPFFNSCDTYKDGSISTNEWC 305 (434)
T ss_pred ccCcchhhhhhhhhhccccccccccCHHHhhhhhccCchhHHHHHHhhhcccccCccccchhh
Confidence 345566788999999999999999999999986443444449999999999999999998886
No 67
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.40 E-value=0.0039 Score=30.99 Aligned_cols=46 Identities=15% Similarity=0.248 Sum_probs=30.2
Q ss_pred ccCCCchHHHHHhccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 19 SSIKPSTELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 19 ~~~~~~~~l~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
+.+........+.....+...+.+..+|..+|++++|.|+.+++..
T Consensus 15 g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~ 60 (63)
T cd00051 15 GTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLE 60 (63)
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 3345554444443322223345667789999999999999999875
No 68
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.28 E-value=0.0037 Score=35.18 Aligned_cols=60 Identities=13% Similarity=0.155 Sum_probs=38.0
Q ss_pred hhhhhhhh-cccc-CCCchHHHHHhccC----C-HHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhc
Q psy11003 9 EVSNDIKN-DWSS-IKPSTELNLSLNKI----D-ADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPEL 68 (96)
Q Consensus 9 ~~~~~~~~-~~~~-~~~~~~l~~~~~~~----~-~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l 68 (96)
.|..+.+. .++. ++..+....+...+ + ......+..+++.+|.+++|.|+.+||.. +..+
T Consensus 15 ~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 15 IFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 34444433 3332 55555555443322 1 12345788899999999999999999998 5544
No 69
>KOG2562|consensus
Probab=96.25 E-value=0.0042 Score=44.23 Aligned_cols=58 Identities=17% Similarity=0.303 Sum_probs=42.4
Q ss_pred HHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHHHHHHHHHh----CCCCCCeeeccccc
Q psy11003 38 EIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPLVQRVIDIF----DEDGNGEVDFKGKL 95 (96)
Q Consensus 38 ~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~~~~~~~~~----d~~~~g~i~~~eFl 95 (96)
....++-.|-.+|+|++|.|+.++|+. --.......++++|..+ -...+|+++|++|+
T Consensus 276 ~f~viy~kFweLD~Dhd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv 338 (493)
T KOG2562|consen 276 HFYVIYCKFWELDTDHDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFV 338 (493)
T ss_pred HHHHHHHHHhhhccccccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHH
Confidence 333455568899999999999999998 43333333489999833 33567889999986
No 70
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.24 E-value=0.0068 Score=33.76 Aligned_cols=48 Identities=21% Similarity=0.312 Sum_probs=32.8
Q ss_pred cCCCchHHHHHhccCCHHH-----HHHHHHHHhhhCCCCCCceeHHHHcC-chh
Q psy11003 20 SIKPSTELNLSLNKIDADE-----IRRLGKRFRKLDLDNSGALSIDEFMS-LPE 67 (96)
Q Consensus 20 ~~~~~~~l~~~~~~~~~~~-----~~~l~~~F~~~D~~~~G~i~~~el~~-l~~ 67 (96)
.+...+....+...++..- .+.+..+|+.+|.+++|.|+.++|.. +..
T Consensus 26 ~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 26 TLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred cCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 3555544444433332222 46788899999999999999999988 543
No 71
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.19 E-value=0.0083 Score=30.97 Aligned_cols=54 Identities=15% Similarity=0.071 Sum_probs=34.1
Q ss_pred hhhhhhhhhccccCCCchHHHHHhc-cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 8 HEVSNDIKNDWSSIKPSTELNLSLN-KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
..|...-.+.++.+...+....+.. .++ .+.+..+|..+|++++|.|+.+++..
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~g~~---~~~~~~i~~~~d~~~~g~i~~~ef~~ 57 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKSGLP---RSVLAQIWDLADTDKDGKLDKEEFAI 57 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHcCCC---HHHHHHHHHHhcCCCCCcCCHHHHHH
Confidence 3455444444444555444433322 223 34577889999999999999999987
No 72
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.12 E-value=0.0034 Score=35.17 Aligned_cols=49 Identities=22% Similarity=0.440 Sum_probs=33.5
Q ss_pred cCCCchHHHHHhccCC-----HHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhc
Q psy11003 20 SIKPSTELNLSLNKID-----ADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPEL 68 (96)
Q Consensus 20 ~~~~~~~l~~~~~~~~-----~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l 68 (96)
.+...+....+...++ ......+..+++.+|.|++|.|+.+||.. +..+
T Consensus 27 ~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 27 QLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred eECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 3555555444444432 12345678899999999999999999998 5544
No 73
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.11 E-value=0.0047 Score=34.50 Aligned_cols=29 Identities=21% Similarity=0.442 Sum_probs=24.1
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-chhc
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-LPEL 68 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l~~l 68 (96)
+++.++++.+|.+++|.|+.+||.. +..+
T Consensus 51 ~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 51 AEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 4667778899999999999999988 5543
No 74
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=95.95 E-value=0.0061 Score=25.38 Aligned_cols=22 Identities=32% Similarity=0.777 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCCCeeeccccc
Q psy11003 74 VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 74 ~~~~~~~~d~~~~g~i~~~eFl 95 (96)
++.+|..+|.+++|.|++.+|.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~ 23 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFK 23 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHH
Confidence 4678999999999999999985
No 75
>KOG1029|consensus
Probab=95.81 E-value=0.0054 Score=46.33 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 35 ~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+.....+++..|+.+|+...|++|-..-+. |...+.... +-.++...|.|+||+++.+||+
T Consensus 190 p~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfi 252 (1118)
T KOG1029|consen 190 PQHNKLKYRQLFNALDKTRSGYLSGQQARSALGQSGLPQNQLAHIWTLSDVDGDGKLSADEFI 252 (1118)
T ss_pred cchhhhHHHHHhhhcccccccccccHHHHHHHHhcCCchhhHhhheeeeccCCCCcccHHHHH
Confidence 344556889999999999999999988888 766666554 7778888899999999999995
No 76
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=95.75 E-value=0.015 Score=32.09 Aligned_cols=29 Identities=21% Similarity=0.505 Sum_probs=24.6
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcC-chh
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMS-LPE 67 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~-l~~ 67 (96)
.+.+..++..+|.+++|.|+.++|.. +..
T Consensus 50 ~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~ 79 (88)
T cd00213 50 PEAVDKIMKDLDVNKDGKVDFQEFLVLIGK 79 (88)
T ss_pred HHHHHHHHHHhccCCCCcCcHHHHHHHHHH
Confidence 45688889999999999999999988 544
No 77
>KOG4065|consensus
Probab=95.72 E-value=0.0069 Score=35.72 Aligned_cols=61 Identities=23% Similarity=0.328 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chh------cCC-CH------H----HHHHHHHhCCCCCCeeecccc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPE------LQQ-NP------L----VQRVIDIFDEDGNGEVDFKGK 94 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~------l~~-~~------~----~~~~~~~~d~~~~g~i~~~eF 94 (96)
.+|+++.+ -..|+..|-|++|.++--|+.. +.- .|- ++ . ++.+++.-|.++||.|+|.||
T Consensus 62 ~mtpeqlq--fHYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEf 139 (144)
T KOG4065|consen 62 KMTPEQLQ--FHYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEF 139 (144)
T ss_pred hCCHHHHh--hhhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHH
Confidence 34555543 3568999999999999888877 522 111 11 1 455566668899999999999
Q ss_pred c
Q psy11003 95 L 95 (96)
Q Consensus 95 l 95 (96)
+
T Consensus 140 l 140 (144)
T KOG4065|consen 140 L 140 (144)
T ss_pred H
Confidence 6
No 78
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.57 E-value=0.012 Score=32.84 Aligned_cols=28 Identities=21% Similarity=0.482 Sum_probs=24.2
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-chh
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-LPE 67 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l~~ 67 (96)
+.+..+|+.+|++++|.|+.++|.. +..
T Consensus 52 ~~v~~i~~~~D~d~~G~I~f~eF~~l~~~ 80 (92)
T cd05025 52 DAVDKIMKELDENGDGEVDFQEFVVLVAA 80 (92)
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 5688889999999999999999988 544
No 79
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=95.48 E-value=0.01 Score=33.11 Aligned_cols=29 Identities=28% Similarity=0.432 Sum_probs=24.4
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcC-chh
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMS-LPE 67 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~-l~~ 67 (96)
.+.+.++++.+|++++|.|+.++|.. +..
T Consensus 50 ~~~v~~~i~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 50 QEVVDKVMETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 35588888899999999999999988 543
No 80
>KOG4578|consensus
Probab=95.30 E-value=0.0049 Score=42.32 Aligned_cols=57 Identities=12% Similarity=0.240 Sum_probs=45.6
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcCchhc---CCCHH--HHHHHHHhCCCCCCeeeccccc
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMSLPEL---QQNPL--VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~l~~l---~~~~~--~~~~~~~~d~~~~g~i~~~eFl 95 (96)
...++..|..+|+|.++.|...|.+-++.+ ..++. .+++++.+|.++|..|++.|++
T Consensus 332 eRvv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~ 393 (421)
T KOG4578|consen 332 ERVVHWYFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWR 393 (421)
T ss_pred hheeeeeeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHh
Confidence 335788899999999999999997764322 22333 8899999999999999999985
No 81
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=95.23 E-value=0.014 Score=32.70 Aligned_cols=30 Identities=27% Similarity=0.501 Sum_probs=25.1
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcC-chhc
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMS-LPEL 68 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l 68 (96)
.+.+..+++.+|.+++|.|+.++|.. +..+
T Consensus 50 ~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~~ 80 (94)
T cd05031 50 PMAVDKIMKDLDQNRDGKVNFEEFVSLVAGL 80 (94)
T ss_pred HHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35688888999999999999999998 5543
No 82
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=94.72 E-value=0.041 Score=32.38 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.2
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
..+..+|..+|.|++|.||.+|+..
T Consensus 80 ~~~~~f~~~~D~n~Dg~IS~~Ef~~ 104 (116)
T cd00252 80 HCIKPFFESCDLDKDGSISLDEWCY 104 (116)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHH
Confidence 4457899999999999999999988
No 83
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=94.42 E-value=0.026 Score=31.68 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=30.7
Q ss_pred hccccCCCchHHHHHhc-cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 16 NDWSSIKPSTELNLSLN-KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 16 ~~~~~~~~~~~l~~~~~-~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
+..+.+...+...++.. .++. +.+..+|..+|.+++|.|+.++|..
T Consensus 22 d~~G~Is~~el~~~l~~~~~~~---~ev~~i~~~~d~~~~g~I~~~eF~~ 68 (96)
T smart00027 22 NQDGTVTGAQAKPILLKSGLPQ---TLLAKIWNLADIDNDGELDKDEFAL 68 (96)
T ss_pred CCCCeEeHHHHHHHHHHcCCCH---HHHHHHHHHhcCCCCCCcCHHHHHH
Confidence 34444555444443322 2343 3567788899999999999999998
No 84
>KOG0042|consensus
Probab=94.21 E-value=0.019 Score=42.10 Aligned_cols=64 Identities=23% Similarity=0.297 Sum_probs=54.4
Q ss_pred ccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCC--HH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQN--PL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~--~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
-.++++++...+..|..+|.++.|+++..+... |...+.+ .. .++++++.+...+|.+...||.
T Consensus 585 i~~~~~~~~~~~~rf~~lD~~k~~~~~i~~v~~vlk~~~~~~d~~~~~~~l~ea~~~~~g~v~l~e~~ 652 (680)
T KOG0042|consen 585 IKLTPEDFLRRKTRFAFLDADKKAYQAIADVLKVLKSENVGWDEDRLHEELQEADENLNGFVELREFL 652 (680)
T ss_pred cccCHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhcceeeHHHHH
Confidence 356899999999999999999999999999999 8776533 33 8888999998889999988874
No 85
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.80 E-value=0.055 Score=30.53 Aligned_cols=31 Identities=23% Similarity=0.380 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhhCCCCCCceeHHHHcC-chhc
Q psy11003 38 EIRRLGKRFRKLDLDNSGALSIDEFMS-LPEL 68 (96)
Q Consensus 38 ~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l 68 (96)
....+.+++..+|.|++|.|+++|+.. +..+
T Consensus 46 d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 46 DPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 446789999999999999999999998 5554
No 86
>KOG2643|consensus
Probab=93.66 E-value=0.009 Score=42.39 Aligned_cols=44 Identities=30% Similarity=0.447 Sum_probs=34.0
Q ss_pred CCCCceeHHHHcC-chhcCCCHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 52 DNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 52 ~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+.+|-|+.+|+.- +.-|..+.. .+-.|+.+|.|++|-|+.+||-
T Consensus 211 g~~GLIsfSdYiFLlTlLS~p~~~F~IAFKMFD~dgnG~IdkeEF~ 256 (489)
T KOG2643|consen 211 GESGLISFSDYIFLLTLLSIPERNFRIAFKMFDLDGNGEIDKEEFE 256 (489)
T ss_pred CCCCeeeHHHHHHHHHHHccCcccceeeeeeeecCCCCcccHHHHH
Confidence 4589999999888 544544332 6667888999999999999984
No 87
>KOG0998|consensus
Probab=93.55 E-value=0.094 Score=40.43 Aligned_cols=63 Identities=19% Similarity=0.281 Sum_probs=54.3
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.+++.+...+.++|...|.+++|.|+..+... +..-|.... +...+..+|....|.+++.+|+
T Consensus 276 ~vsp~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~~gl~~~~l~~~w~l~d~~n~~~ls~~ef~ 340 (847)
T KOG0998|consen 276 KVSPSDKQKYSKIFSQVDKDNDGSISSNEARNIFLPFGLSKPRLAHVWLLADTQNTGTLSKDEFA 340 (847)
T ss_pred ccChHHHHHHHHHHHhccccCCCcccccccccccccCCCChhhhhhhhhhcchhccCcccccccc
Confidence 45778889999999999999999999999999 655665554 8888999999999999999875
No 88
>KOG4666|consensus
Probab=93.39 E-value=0.037 Score=38.15 Aligned_cols=56 Identities=7% Similarity=0.074 Sum_probs=40.1
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcCchh--cCCC-HHHHHHHHHhCCCCCCeeecccc
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMSLPE--LQQN-PLVQRVIDIFDEDGNGEVDFKGK 94 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~l~~--l~~~-~~~~~~~~~~d~~~~g~i~~~eF 94 (96)
..-++-+|+.|+.+.||++...+|-.+.+ +|.. ..+-.+|...++..+|+|++++|
T Consensus 295 ~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~~l~v~~lf~~i~q~d~~ki~~~~f 353 (412)
T KOG4666|consen 295 PVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVEVLRVPVLFPSIEQKDDPKIYASNF 353 (412)
T ss_pred HHHHHHHHHhcccccccccchHHHHHHHHHhcCcceeeccccchhhhcccCcceeHHHH
Confidence 34467778888888888888877777433 3432 22677888888888888888887
No 89
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=93.22 E-value=0.13 Score=27.55 Aligned_cols=51 Identities=18% Similarity=0.251 Sum_probs=33.0
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHHHHHHHHHhCC----C---CCCeeeccccc
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPLVQRVIDIFDE----D---GNGEVDFKGKL 95 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~~~~~~~~~d~----~---~~g~i~~~eFl 95 (96)
+++..+|+.+ .++.++||.++|++ |..-. .+-+...+.+ + ..|.++|..|+
T Consensus 6 eqv~~aFr~l-A~~KpyVT~~dLr~~l~pe~----aey~~~~Mp~~~~~~~~~~~~~~DY~~f~ 64 (69)
T PF08726_consen 6 EQVEEAFRAL-AGGKPYVTEEDLRRSLTPEQ----AEYCISRMPPYEGPDGDAIPGAYDYESFT 64 (69)
T ss_dssp HHHHHHHHHH-CTSSSCEEHHHHHHHS-CCC----HHHHHCCSEC--SSS----TTEEECHHHH
T ss_pred HHHHHHHHHH-HcCCCcccHHHHHHHcCcHH----HHHHHHHCcccCCCCcCCCCCCcCHHHHH
Confidence 4678899999 67789999999998 63321 2233333322 1 23678888886
No 90
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=92.65 E-value=0.059 Score=29.37 Aligned_cols=54 Identities=22% Similarity=0.419 Sum_probs=38.6
Q ss_pred HHHHHHhhhCCCCCCceeHHHHcC-chhc-CC---CHH-HHHHHHHhCCC----CCCeeeccccc
Q psy11003 41 RLGKRFRKLDLDNSGALSIDEFMS-LPEL-QQ---NPL-VQRVIDIFDED----GNGEVDFKGKL 95 (96)
Q Consensus 41 ~l~~~F~~~D~~~~G~i~~~el~~-l~~l-~~---~~~-~~~~~~~~d~~----~~g~i~~~eFl 95 (96)
++..+|..+.. +.+.++.++|.. |..- +. ... +..++..+.++ ..+.++++.|.
T Consensus 1 ei~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~ 64 (83)
T PF09279_consen 1 EIEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFT 64 (83)
T ss_dssp HHHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHH
T ss_pred CHHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHH
Confidence 46788999966 799999999999 7442 22 233 77777776443 36788888875
No 91
>KOG0035|consensus
Probab=92.62 E-value=0.12 Score=39.75 Aligned_cols=64 Identities=19% Similarity=0.099 Sum_probs=50.2
Q ss_pred ccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH--------HHHHHHHhCCCCCCeeeccccc
Q psy11003 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL--------VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~--------~~~~~~~~d~~~~g~i~~~eFl 95 (96)
...++....++++.|+.+++...|..+.+++.. +..+|.+.. +..+....|..+.|++++.+|.
T Consensus 739 k~~sQ~v~~ElrAle~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ 811 (890)
T KOG0035|consen 739 KGTSQYVLDELRALENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFE 811 (890)
T ss_pred cchhHHHHHHHHHHHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHH
Confidence 334566788999999999999999999999999 888876543 4445555566677899998875
No 92
>KOG2243|consensus
Probab=92.01 E-value=0.1 Score=42.52 Aligned_cols=52 Identities=17% Similarity=0.353 Sum_probs=41.2
Q ss_pred HHHhhhCCCCCCceeHHHHcC-chhcC-CCHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 44 KRFRKLDLDNSGALSIDEFMS-LPELQ-QNPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 44 ~~F~~~D~~~~G~i~~~el~~-l~~l~-~~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+.|+.+|+|+.|.|+..+|.. +.... ...+ ++-++.-...|.+..++|++|+
T Consensus 4061 dtfkeydpdgkgiiskkdf~kame~~k~ytqse~dfllscae~dend~~~y~dfv 4115 (5019)
T KOG2243|consen 4061 DTFKEYDPDGKGIISKKDFHKAMEGHKHYTQSEIDFLLSCAEADENDMFDYEDFV 4115 (5019)
T ss_pred ccchhcCCCCCccccHHHHHHHHhccccchhHHHHHHHHhhccCccccccHHHHH
Confidence 468899999999999999999 75432 2223 7777777777888899999996
No 93
>KOG0377|consensus
Probab=91.98 E-value=0.16 Score=36.61 Aligned_cols=56 Identities=29% Similarity=0.493 Sum_probs=40.5
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-c---hhcCCC------------------------------------H-------
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-L---PELQQN------------------------------------P------- 72 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l---~~l~~~------------------------------------~------- 72 (96)
..|.+.|+.+|++..|+++.+.-.. + ..++.+ .
T Consensus 464 sdL~~eF~~~D~~ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetLY 543 (631)
T KOG0377|consen 464 SDLEDEFRKYDPKKSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETLY 543 (631)
T ss_pred hHHHHHHHhcChhhcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHHH
Confidence 4688999999999999998776333 1 111100 0
Q ss_pred ----HHHHHHHHhCCCCCCeeeccccc
Q psy11003 73 ----LVQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 73 ----~~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+++.+|+.+|.|.+|.|+.+||.
T Consensus 544 r~ks~LetiF~~iD~D~SG~isldEF~ 570 (631)
T KOG0377|consen 544 RNKSSLETIFNIIDADNSGEISLDEFR 570 (631)
T ss_pred hchhhHHHHHHHhccCCCCceeHHHHH
Confidence 04678889999999999999995
No 94
>PF14658 EF-hand_9: EF-hand domain
Probab=91.89 E-value=0.33 Score=25.78 Aligned_cols=27 Identities=22% Similarity=0.521 Sum_probs=23.3
Q ss_pred HHHHHHHhhhCCCCC-CceeHHHHcC-ch
Q psy11003 40 RRLGKRFRKLDLDNS-GALSIDEFMS-LP 66 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~-G~i~~~el~~-l~ 66 (96)
.+|+.+.+.+||++. |.|+.+.|.. |+
T Consensus 35 ~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 35 SELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred HHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 378888899999998 9999999987 54
No 95
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.83 E-value=0.21 Score=35.30 Aligned_cols=33 Identities=27% Similarity=0.413 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-ch
Q psy11003 34 IDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LP 66 (96)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~ 66 (96)
++.++......+|..+|.|++|.|+.+||+. +.
T Consensus 351 Is~~E~~~~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 351 ITREEWLGSDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred CcHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 3455555568899999999999999999998 53
No 96
>KOG0751|consensus
Probab=91.71 E-value=0.17 Score=36.89 Aligned_cols=45 Identities=31% Similarity=0.544 Sum_probs=27.2
Q ss_pred CCCCCCceeHHHHcCchhcCCCHH--HHHHHHHhCCCCCCeeecccc
Q psy11003 50 DLDNSGALSIDEFMSLPELQQNPL--VQRVIDIFDEDGNGEVDFKGK 94 (96)
Q Consensus 50 D~~~~G~i~~~el~~l~~l~~~~~--~~~~~~~~d~~~~g~i~~~eF 94 (96)
|..+||-|+++|++.+..+-+.|+ ....|.-+|..++|.+++++|
T Consensus 84 D~tKDglisf~eF~afe~~lC~pDal~~~aFqlFDr~~~~~vs~~~~ 130 (694)
T KOG0751|consen 84 DQTKDGLISFQEFRAFESVLCAPDALFEVAFQLFDRLGNGEVSFEDV 130 (694)
T ss_pred hhcccccccHHHHHHHHhhccCchHHHHHHHHHhcccCCCceehHHH
Confidence 345566777777766544444443 455666667777777776665
No 97
>KOG2562|consensus
Probab=91.68 E-value=0.046 Score=39.13 Aligned_cols=60 Identities=23% Similarity=0.383 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCceeHHHHcC-c-------hhcCCCHH-----HHHHHHHhCCCCCCeeeccccc
Q psy11003 36 ADEIRRLGKRFRKLDLDNSGALSIDEFMS-L-------PELQQNPL-----VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 36 ~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l-------~~l~~~~~-----~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+.....+.=+|+.+|.+++|.++..|++- . ...+..+- +.+++..+-+...++|+.++|.
T Consensus 347 k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk 419 (493)
T KOG2562|consen 347 KDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLK 419 (493)
T ss_pred CCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHh
Confidence 33445688899999999999999998776 2 22343321 5556666666667889988875
No 98
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=91.57 E-value=0.21 Score=25.17 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=21.9
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
......+|+..|++++|.+..+|+..
T Consensus 20 ~~yA~~LFq~~D~s~~g~Le~~Ef~~ 45 (51)
T PF14788_consen 20 DEYARQLFQECDKSQSGRLEGEEFEE 45 (51)
T ss_dssp HHHHHHHHHHH-SSSSSEBEHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCccHHHHHH
Confidence 34567899999999999999999987
No 99
>KOG2643|consensus
Probab=91.24 E-value=0.32 Score=34.85 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhhCCCCCCceeHHHHcC-c-hhcCCCHH-----HHHHHHHhCCCCCCeeeccccc
Q psy11003 38 EIRRLGKRFRKLDLDNSGALSIDEFMS-L-PELQQNPL-----VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 38 ~~~~l~~~F~~~D~~~~G~i~~~el~~-l-~~l~~~~~-----~~~~~~~~d~~~~g~i~~~eFl 95 (96)
|.+-+.--|..+|+..+|.|+..+|-. | ...+.+.. ++++-+.++.+ +..|+++||.
T Consensus 316 q~Eil~lEF~~~~~~~~g~Ise~DFA~~lL~~a~~n~~~k~~~lkrvk~kf~~~-~~gISl~Ef~ 379 (489)
T KOG2643|consen 316 QEEILELEFERFDKGDSGAISEVDFAELLLAYAGVNSKKKHKYLKRVKEKFKDD-GKGISLQEFK 379 (489)
T ss_pred HHHHHHHHHHHhCcccccccCHHHHHHHHHHHcccchHhHHHHHHHHHHhccCC-CCCcCHHHHH
Confidence 344567779999999999999999999 4 33333332 67777777766 4459999885
No 100
>KOG0169|consensus
Probab=91.09 E-value=0.2 Score=37.87 Aligned_cols=60 Identities=18% Similarity=0.317 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH---HHHHHHHhCCCCCCeeeccccc
Q psy11003 36 ADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 36 ~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.....++..+|...|++++|.++..+... +..+..... ...+|++++..+++++.+++|+
T Consensus 132 ~~~~~wi~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~ 195 (746)
T KOG0169|consen 132 SRREHWIHSIFQEADKNKNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFV 195 (746)
T ss_pred chHHHHHHHHHHHHccccccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHH
Confidence 34467899999999999999999999988 676655443 7888888887888888877764
No 101
>KOG0751|consensus
Probab=90.95 E-value=0.22 Score=36.34 Aligned_cols=59 Identities=17% Similarity=0.340 Sum_probs=40.0
Q ss_pred HHHHHHHHHh---hhCCCCCCceeHHHHcC--chhcCC---CHHHHHHHH-HhCCCCCCeeecccccC
Q psy11003 38 EIRRLGKRFR---KLDLDNSGALSIDEFMS--LPELQQ---NPLVQRVID-IFDEDGNGEVDFKGKLL 96 (96)
Q Consensus 38 ~~~~l~~~F~---~~D~~~~G~i~~~el~~--l~~l~~---~~~~~~~~~-~~d~~~~g~i~~~eFl~ 96 (96)
+.++|+.+|- ..++++..+.+.+++.+ +.-.+. ++++.+++. ..|.-+||-|+|+||++
T Consensus 31 ~~~eLr~if~~~as~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~a 98 (694)
T KOG0751|consen 31 DPKELRSIFLKYASIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRA 98 (694)
T ss_pred ChHHHHHHHHHHhHHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHH
Confidence 4455555555 44678888999999998 443333 334444444 45778899999999974
No 102
>KOG4251|consensus
Probab=89.11 E-value=0.6 Score=31.31 Aligned_cols=54 Identities=24% Similarity=0.276 Sum_probs=39.7
Q ss_pred HHHHHHhhhCCCCCCceeHHHHcC-chh-----cCCCHH-------HHHHHHHhCCCCCCeeecccc
Q psy11003 41 RLGKRFRKLDLDNSGALSIDEFMS-LPE-----LQQNPL-------VQRVIDIFDEDGNGEVDFKGK 94 (96)
Q Consensus 41 ~l~~~F~~~D~~~~G~i~~~el~~-l~~-----l~~~~~-------~~~~~~~~d~~~~g~i~~~eF 94 (96)
-+.++.+.+|+|++..++..+|+. ... -|++.. .++.-..+|.+.+|.++++|.
T Consensus 237 mVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeEL 303 (362)
T KOG4251|consen 237 MVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEEL 303 (362)
T ss_pred HHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHH
Confidence 467888999999999999999999 332 233333 233444578899999998874
No 103
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=88.74 E-value=0.65 Score=26.76 Aligned_cols=25 Identities=32% Similarity=0.546 Sum_probs=22.2
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
+.|..++...|.+++|+++.+||..
T Consensus 43 ~~L~~IW~LaD~~~dG~L~~~EF~i 67 (104)
T PF12763_consen 43 DVLAQIWNLADIDNDGKLDFEEFAI 67 (104)
T ss_dssp HHHHHHHHHH-SSSSSEEEHHHHHH
T ss_pred HHHHHHHhhhcCCCCCcCCHHHHHH
Confidence 5688999999999999999999987
No 104
>PF00046 Homeobox: Homeobox domain not present here.; InterPro: IPR001356 The homeobox domain was first identified in a number of drosophila homeotic and segmentation proteins, but is now known to be well-conserved in many other animals, including vertebrates [, , ]. Hox genes encode homeodomain-containing transcriptional regulators that operate differential genetic programs along the anterior-posterior axis of animal bodies []. The domain binds DNA through a helix-turn-helix (HTH) structure. The HTH motif is characterised by two alpha-helices, which make intimate contacts with the DNA and are joined by a short turn. The second helix binds to DNA via a number of hydrogen bonds and hydrophobic interactions, which occur between specific side chains and the exposed bases and thymine methyl groups within the major groove of the DNA []. The first helix helps to stabilise the structure. The motif is very similar in sequence and structure in a wide range of DNA-binding proteins (e.g., cro and repressor proteins, homeotic proteins, etc.). One of the principal differences between HTH motifs in these different proteins arises from the stereo-chemical requirement for glycine in the turn which is needed to avoid steric interference of the beta-carbon with the main chain: for cro and repressor proteins the glycine appears to be mandatory, while for many of the homeotic and other DNA-binding proteins the requirement is relaxed.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2DA3_A 1LFB_A 2LFB_A 2ECB_A 2DA5_A 3D1N_O 3A03_A 2XSD_C 3CMY_A 1AHD_P ....
Probab=83.43 E-value=3.8 Score=20.27 Aligned_cols=43 Identities=16% Similarity=0.201 Sum_probs=33.4
Q ss_pred ccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHH
Q psy11003 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVID 79 (96)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~ 79 (96)
..+++.+...|...|.. +.+.+.++... ...+|.... +..+|.
T Consensus 5 ~~~t~~q~~~L~~~f~~-----~~~p~~~~~~~la~~l~l~~~~V~~WF~ 49 (57)
T PF00046_consen 5 TRFTKEQLKVLEEYFQE-----NPYPSKEEREELAKELGLTERQVKNWFQ 49 (57)
T ss_dssp SSSSHHHHHHHHHHHHH-----SSSCHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH-----hccccccccccccccccccccccccCHH
Confidence 35788999999999995 67888888888 466777766 777765
No 105
>KOG1707|consensus
Probab=79.70 E-value=2.4 Score=31.69 Aligned_cols=33 Identities=39% Similarity=0.532 Sum_probs=29.4
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcCc
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL 65 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~l 65 (96)
.+++.-++.+.+.|..+|.|+||.++.+|+..+
T Consensus 308 ELs~~~~~Fl~~~f~~~D~d~Dg~L~p~El~~L 340 (625)
T KOG1707|consen 308 ELSPKGYRFLVDVFEKFDRDNDGALSPEELKDL 340 (625)
T ss_pred eccHHHHHHHHHHHHhccCCCCCCcCHHHHHHH
Confidence 356777889999999999999999999999983
No 106
>KOG4347|consensus
Probab=79.68 E-value=2.5 Score=31.87 Aligned_cols=52 Identities=25% Similarity=0.360 Sum_probs=38.7
Q ss_pred HHHHHHhhhCCCCCCceeHHHHcC-chhcCC--CHH-HHHHHHHhCCCCCCeeeccc
Q psy11003 41 RLGKRFRKLDLDNSGALSIDEFMS-LPELQQ--NPL-VQRVIDIFDEDGNGEVDFKG 93 (96)
Q Consensus 41 ~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~--~~~-~~~~~~~~d~~~~g~i~~~e 93 (96)
-+.+.|+.+|.+.+|.++..++.. |..+.- ... +.-+++-.+.+++ ..+.++
T Consensus 556 ~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~ 611 (671)
T KOG4347|consen 556 FLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREE 611 (671)
T ss_pred HHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-cccccc
Confidence 478999999999999999999999 755432 222 6667777787776 555443
No 107
>KOG1029|consensus
Probab=79.24 E-value=4.9 Score=31.31 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=47.7
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHHhCCCCCCeeecccc
Q psy11003 34 IDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDGNGEVDFKGK 94 (96)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~d~~~~g~i~~~eF 94 (96)
.|.++-.+....|..+-+ +.|+|+-..-+. +.+.+.+.. +-.++...|.|.||+++..||
T Consensus 10 vT~~Er~K~~~qF~~Lkp-~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~Ef 71 (1118)
T KOG1029|consen 10 VTDEERQKHDAQFGQLKP-GQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREF 71 (1118)
T ss_pred cchHHHHHHHHHHhccCC-CCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHH
Confidence 456666777777877766 479999999888 666666554 788999999999999998888
No 108
>KOG4004|consensus
Probab=78.81 E-value=1.6 Score=28.32 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=38.3
Q ss_pred HHHHhhhCC-CCCCceeHHHHcCchhcCCCHH--HHHHHHHhCCCCCCeeecccc
Q psy11003 43 GKRFRKLDL-DNSGALSIDEFMSLPELQQNPL--VQRVIDIFDEDGNGEVDFKGK 94 (96)
Q Consensus 43 ~~~F~~~D~-~~~G~i~~~el~~l~~l~~~~~--~~~~~~~~d~~~~g~i~~~eF 94 (96)
...|-.+|. -.+|++|-.|+.-++.--.++. +...|..+|.+.||.|+.+||
T Consensus 190 ~wqf~qld~~p~d~~~sh~el~pl~ap~ipme~c~~~f~e~cd~~nd~~ial~ew 244 (259)
T KOG4004|consen 190 HWQFGQLDQHPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEW 244 (259)
T ss_pred eeeeccccCCCccccccccccccccCCcccHHhhchhhhhcccCCCCCceeHHHh
Confidence 344666664 3489999888887544333333 788999999999999999887
No 109
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=78.45 E-value=3 Score=25.60 Aligned_cols=53 Identities=13% Similarity=0.239 Sum_probs=33.1
Q ss_pred HHHHhhh---CCCCCCceeHHHHcC-chhcCC-----CHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 43 GKRFRKL---DLDNSGALSIDEFMS-LPELQQ-----NPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 43 ~~~F~~~---D~~~~G~i~~~el~~-l~~l~~-----~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+.+|..| -+.+...++-..+.. ++..+. ... ++-+|..+-..+...|+|++|+
T Consensus 2 ~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~ 64 (154)
T PF05517_consen 2 EAVFKAFASFGKKNGTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFL 64 (154)
T ss_dssp HHHHHHHHCSSTSTSSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHH
T ss_pred HHHHHHHHHhcCCccccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHH
Confidence 3444444 355566778888888 544332 222 7888888766666779999985
No 110
>KOG2871|consensus
Probab=77.87 E-value=1.7 Score=30.72 Aligned_cols=57 Identities=18% Similarity=0.285 Sum_probs=38.1
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcC-chhcC---CCHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMS-LPELQ---QNPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~---~~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
-+.+++.|..+|+.++|+|+.+-++. +..+. ..+. +--+-..+|+.+-|-|-.++|+
T Consensus 308 s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~N~~vse~a~v~l~~~~l~pE~~~iil~~d~l 369 (449)
T KOG2871|consen 308 SEQLRRNFHAYDPEDNNFISCSGLQIVMTALNRLVSEPAYVMLMRQPLDPESLGIILLEDFL 369 (449)
T ss_pred CHHHHhhhhccCccCCCeeecHHHHHHHHHhcccccCHHHHHHhcCccChhhcceEEecccc
Confidence 46799999999999999999999998 65554 1222 3333333555555655555543
No 111
>KOG4666|consensus
Probab=76.25 E-value=2.5 Score=29.54 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=40.0
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCH---H-HHHHHHHhCCCCCCeee
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP---L-VQRVIDIFDEDGNGEVD 90 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~---~-~~~~~~~~d~~~~g~i~ 90 (96)
+.+...|..||.+++|.++..+... +.-+...+ . ++-.|+.++.+.||.+.
T Consensus 259 d~l~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~g 314 (412)
T KOG4666|consen 259 DKLAPTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISG 314 (412)
T ss_pred hhhhhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccc
Confidence 6789999999999999999988777 64443332 2 77888889988888654
No 112
>cd00086 homeodomain Homeodomain; DNA binding domains involved in the transcriptional regulation of key eukaryotic developmental processes; may bind to DNA as monomers or as homo- and/or heterodimers, in a sequence-specific manner.
Probab=74.79 E-value=8.4 Score=18.86 Aligned_cols=43 Identities=21% Similarity=0.198 Sum_probs=32.9
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHH
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDI 80 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~ 80 (96)
.+++.+...|...|.. +.+.+.+++.. ...+|.... +..+|..
T Consensus 6 ~~~~~~~~~Le~~f~~-----~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (59)
T cd00086 6 RFTPEQLEELEKEFEK-----NPYPSREEREELAKELGLTERQVKIWFQN 50 (59)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 4678888899999997 56888888888 466777665 7777753
No 113
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=74.38 E-value=4.9 Score=24.71 Aligned_cols=46 Identities=15% Similarity=0.349 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhCCCCCCceeHHHHcC-c----hhcCCCHHHHHHHHHh
Q psy11003 36 ADEIRRLGKRFRKLDLDNSGALSIDEFMS-L----PELQQNPLVQRVIDIF 81 (96)
Q Consensus 36 ~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l----~~l~~~~~~~~~~~~~ 81 (96)
..+++.+.+....+|+.+.+|+|.++++. + ..++..+.++..++.+
T Consensus 65 ~~~Lq~L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P~Ee~Lrql 115 (148)
T PF12486_consen 65 MTQLQQLADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVPLEEQLRQL 115 (148)
T ss_pred HHHHHHHHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 35677888888999999999999999999 5 2233333355545444
No 114
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=71.89 E-value=2.9 Score=26.39 Aligned_cols=34 Identities=18% Similarity=0.123 Sum_probs=27.3
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL 73 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~ 73 (96)
..|+.-..-+|+|+||.|.+.|--. ++.+|.++.
T Consensus 7 T~LQqHvaFFDrd~DGiI~P~dTy~GFraLGf~~~ 41 (174)
T PF05042_consen 7 TVLQQHVAFFDRDKDGIIYPWDTYQGFRALGFGIL 41 (174)
T ss_pred cHHhhhhceeCCCCCeeECHHHHHHHHHHhCCCHH
Confidence 3456666778999999999999877 888887764
No 115
>KOG3866|consensus
Probab=71.62 E-value=1 Score=31.21 Aligned_cols=54 Identities=24% Similarity=0.269 Sum_probs=39.0
Q ss_pred HHHHhhhCCCCCCceeHHHHcCc--hh---cCC--CHH-------------HHHHHHHhCCCCCCeeecccccC
Q psy11003 43 GKRFRKLDLDNSGALSIDEFMSL--PE---LQQ--NPL-------------VQRVIDIFDEDGNGEVDFKGKLL 96 (96)
Q Consensus 43 ~~~F~~~D~~~~G~i~~~el~~l--~~---l~~--~~~-------------~~~~~~~~d~~~~g~i~~~eFl~ 96 (96)
+..|...|.|++|++...++..| .. +.. +.. -..+++.+|.+.|.-|+.+||++
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~ 320 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLN 320 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHh
Confidence 45778888999999999998873 11 111 111 24467788999999999999974
No 116
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=71.02 E-value=7.7 Score=20.73 Aligned_cols=44 Identities=14% Similarity=0.261 Sum_probs=33.3
Q ss_pred CchHHHHHhccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcC
Q psy11003 23 PSTELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQ 69 (96)
Q Consensus 23 ~~~~l~~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~ 69 (96)
....+.++...+++.....+...|..|- .+.|+.++|.+ ++..-
T Consensus 11 F~~L~~~l~~~l~~~~~~~l~~~Y~~~k---~~kIsR~~fvr~lR~IV 55 (70)
T PF12174_consen 11 FPMLFSALSKHLPPSKMDLLQKHYEEFK---KKKISREEFVRKLRQIV 55 (70)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHH
Confidence 3445567777888888888877777654 68999999999 87753
No 117
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=70.06 E-value=7.1 Score=21.96 Aligned_cols=54 Identities=13% Similarity=0.161 Sum_probs=30.7
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcC-ch-------hcCCCHH-------HHHHHHHhCCCCCCeeeccccc
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMS-LP-------ELQQNPL-------VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~-l~-------~l~~~~~-------~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.++++-+|+.+ .|.+|.++...|.. |. .+|+.+. ++..|.... ....|+-++|+
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl 70 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFL 70 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHH
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHH
Confidence 36788899988 57799999887766 42 2444332 677777652 34457766665
No 118
>KOG2301|consensus
Probab=69.70 E-value=1.4 Score=36.44 Aligned_cols=41 Identities=10% Similarity=0.264 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL 73 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~ 73 (96)
.+++.+.+.+++++..+|++..|+|+.+++.. ++.+..++.
T Consensus 1410 ~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~ 1451 (1592)
T KOG2301|consen 1410 GLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLD 1451 (1592)
T ss_pred cCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccc
Confidence 35677899999999999999999999999999 666655443
No 119
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=65.13 E-value=13 Score=23.61 Aligned_cols=54 Identities=17% Similarity=0.269 Sum_probs=35.9
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcC-chhcCC--CHH--------HHHHHHHhCCCCCCeeeccc
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQ--NPL--------VQRVIDIFDEDGNGEVDFKG 93 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~--~~~--------~~~~~~~~d~~~~g~i~~~e 93 (96)
-+++.++|..+++.+.+.+|..|+.. +..-.. .+. +.-++. +-.+.+|.++.++
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~-L~~d~dG~l~Ke~ 159 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYI-LAKDKDGFLSKED 159 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHH-HHcCcCCcEeHHH
Confidence 46789999999999999999999999 543221 111 222332 2346678777654
No 120
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=64.68 E-value=6.6 Score=21.38 Aligned_cols=41 Identities=27% Similarity=0.440 Sum_probs=22.5
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHHhC
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFD 82 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~d 82 (96)
..++++....- ..|+||.+++.. |+.....+. ++.++..+.
T Consensus 7 ~~i~~Li~~gK--~~G~lT~~eI~~~L~~~~~~~e~id~i~~~L~ 49 (82)
T PF03979_consen 7 EAIKKLIEKGK--KKGYLTYDEINDALPEDDLDPEQIDEIYDTLE 49 (82)
T ss_dssp HHHHHHHHHHH--HHSS-BHHHHHHH-S-S---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--hcCcCCHHHHHHHcCccCCCHHHHHHHHHHHH
Confidence 34444444432 378999999999 886666665 666666654
No 121
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=59.82 E-value=7 Score=15.84 Aligned_cols=15 Identities=13% Similarity=0.353 Sum_probs=9.3
Q ss_pred CCCCCCceeHHHHcC
Q psy11003 50 DLDNSGALSIDEFMS 64 (96)
Q Consensus 50 D~~~~G~i~~~el~~ 64 (96)
|.|++|.|+.-++..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 457777777666543
No 122
>TIGR01565 homeo_ZF_HD homeobox domain, ZF-HD class. This model represents a class of homoebox domain that differs substantially from the typical homoebox domain described in pfam model pfam00046. It is found in both C4 and C3 plants.
Probab=59.06 E-value=21 Score=18.36 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=27.4
Q ss_pred hccCCHHHHHHHHHHHhhhCCCCCCc----eeHHHHcC-chhcCCCHH
Q psy11003 31 LNKIDADEIRRLGKRFRKLDLDNSGA----LSIDEFMS-LPELQQNPL 73 (96)
Q Consensus 31 ~~~~~~~~~~~l~~~F~~~D~~~~G~----i~~~el~~-l~~l~~~~~ 73 (96)
.+.+|++|.+.+.+.|.. .|+ .+..+... ...+|....
T Consensus 5 RT~Ft~~Q~~~Le~~fe~-----~~y~~~~~~~~~r~~la~~lgl~~~ 47 (58)
T TIGR01565 5 RTKFTAEQKEKMRDFAEK-----LGWKLKDKRREEVREFCEEIGVTRK 47 (58)
T ss_pred CCCCCHHHHHHHHHHHHH-----cCCCCCCCCHHHHHHHHHHhCCCHH
Confidence 357899999999999986 666 67666666 455665543
No 123
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=57.97 E-value=19 Score=20.67 Aligned_cols=54 Identities=17% Similarity=0.231 Sum_probs=33.5
Q ss_pred HHHHHHHHHhhhCCCCCCceeHHHHcCchhcCCCHH-HHHHHHHhCC---CCCCeeeccc
Q psy11003 38 EIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL-VQRVIDIFDE---DGNGEVDFKG 93 (96)
Q Consensus 38 ~~~~l~~~F~~~D~~~~G~i~~~el~~l~~l~~~~~-~~~~~~~~d~---~~~g~i~~~e 93 (96)
....+...|..+-. +|+++.+.|..+-.+..... ..++|..+-. -....|+.+|
T Consensus 28 ~W~~VE~RFd~La~--dG~L~rs~Fg~CIGM~dSkeFA~eLFdALaRrr~i~~~~I~k~e 85 (100)
T PF08414_consen 28 GWKEVEKRFDKLAK--DGLLPRSDFGECIGMKDSKEFAGELFDALARRRGIKGDSITKDE 85 (100)
T ss_dssp -HHHHHHHHHHH-B--TTBEEGGGHHHHHT--S-HHHHHHHHHHHHHHTT--SSEE-HHH
T ss_pred CHHHHHHHHHHhCc--CCcccHHHHHHhcCCcccHHHHHHHHHHHHHhcCCccCCcCHHH
Confidence 47788999999988 89999999999666665554 5666665422 1134566554
No 124
>smart00389 HOX Homeodomain. DNA-binding factors that are involved in the transcriptional regulation of key developmental processes
Probab=54.71 E-value=25 Score=16.98 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=31.0
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHH
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDI 80 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~ 80 (96)
.+++.+...|...|.. +.+.+.++... ...+|.... +..+|..
T Consensus 6 ~~~~~~~~~L~~~f~~-----~~~P~~~~~~~la~~~~l~~~qV~~WF~n 50 (56)
T smart00389 6 SFTPEQLEELEKEFQK-----NPYPSREEREELAAKLGLSERQVKVWFQN 50 (56)
T ss_pred cCCHHHHHHHHHHHHh-----CCCCCHHHHHHHHHHHCcCHHHHHHhHHH
Confidence 4678888889988874 33778888888 466777665 7777753
No 125
>KOG1955|consensus
Probab=53.96 E-value=14 Score=27.49 Aligned_cols=27 Identities=33% Similarity=0.584 Sum_probs=25.4
Q ss_pred HHHHHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 38 EIRRLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 38 ~~~~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
.+.+|..++.+-|-+++|.++..||..
T Consensus 263 pi~ELshIWeLsD~d~DGALtL~EFcA 289 (737)
T KOG1955|consen 263 PIEELSHIWELSDVDRDGALTLSEFCA 289 (737)
T ss_pred chHHHHHHHhhcccCccccccHHHHHh
Confidence 578999999999999999999999987
No 126
>KOG0041|consensus
Probab=53.47 E-value=23 Score=23.25 Aligned_cols=38 Identities=29% Similarity=0.390 Sum_probs=28.4
Q ss_pred HHHHhccCCHH-HHHHHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 27 LNLSLNKIDAD-EIRRLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 27 l~~~~~~~~~~-~~~~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
|..+...+... .--.++......|.|.+|.||..++.-
T Consensus 121 LK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflL 159 (244)
T KOG0041|consen 121 LKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLL 159 (244)
T ss_pred HHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHH
Confidence 34444445433 345789999999999999999999877
No 127
>COG5562 Phage envelope protein [General function prediction only]
Probab=51.87 E-value=3.2 Score=25.12 Aligned_cols=15 Identities=13% Similarity=0.297 Sum_probs=9.8
Q ss_pred hCCCCCCeeeccccc
Q psy11003 81 FDEDGNGEVDFKGKL 95 (96)
Q Consensus 81 ~d~~~~g~i~~~eFl 95 (96)
...+..|+.+|+|||
T Consensus 81 l~~~qsGqttF~ef~ 95 (137)
T COG5562 81 LRRHQSGQTTFEEFC 95 (137)
T ss_pred HHHHhcCCccHHHHH
Confidence 344556777777776
No 128
>KOG1707|consensus
Probab=50.86 E-value=27 Score=26.48 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=28.1
Q ss_pred ccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
..+.+.-+..|.++|..-|.|++|.++-.|+-.
T Consensus 187 qelkp~~v~al~RIFki~D~d~D~~Lsd~Eln~ 219 (625)
T KOG1707|consen 187 QELKPRCVKALKRIFKISDSDNDGALSDAELND 219 (625)
T ss_pred ccccHHHHHHHHHHHhhhccccccccchhhhhH
Confidence 345566678899999999999999999988877
No 129
>KOG0040|consensus
Probab=50.27 E-value=20 Score=30.51 Aligned_cols=44 Identities=14% Similarity=0.308 Sum_probs=31.0
Q ss_pred HHHHHHHhhhCCCCCCceeHHHHcC-chh-cCCCH----HHHHHHHHhCC
Q psy11003 40 RRLGKRFRKLDLDNSGALSIDEFMS-LPE-LQQNP----LVQRVIDIFDE 83 (96)
Q Consensus 40 ~~l~~~F~~~D~~~~G~i~~~el~~-l~~-l~~~~----~~~~~~~~~d~ 83 (96)
-.+.++....||+.+|+|+..++.. |-. -..+. .++..|+.++.
T Consensus 2296 p~fe~~ld~vDP~r~G~Vsl~dY~afmi~~ETeNI~s~~eIE~AfraL~a 2345 (2399)
T KOG0040|consen 2296 PEFEEILDLVDPNRDGYVSLQDYMAFMISKETENILSSEEIEDAFRALDA 2345 (2399)
T ss_pred hhHHHHHHhcCCCCcCcccHHHHHHHHHhcccccccchHHHHHHHHHhhc
Confidence 3688888999999999999999988 522 11111 26666666665
No 130
>PF07492 Trehalase_Ca-bi: Neutral trehalase Ca2+ binding domain; InterPro: IPR011120 Neutral trehalases mobilise trehalose accumulated by fungal cells as a protective and storage carbohydrate. This family represents a calcium-binding domain similar to EF hand. Residues 97 and 108 in O42893 from SWISSPROT have been implicated in this interaction. It is thought that this domain may provide a general mechanism for regulating neutral trehalase activity in yeasts and filamentous fungi [].; GO: 0004555 alpha,alpha-trehalase activity, 0005509 calcium ion binding, 0005993 trehalose catabolic process, 0005737 cytoplasm
Probab=49.74 E-value=12 Score=16.58 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=11.6
Q ss_pred HHHHHhCCCCCCeeeccc
Q psy11003 76 RVIDIFDEDGNGEVDFKG 93 (96)
Q Consensus 76 ~~~~~~d~~~~g~i~~~e 93 (96)
.++..-|.|++-+|+.++
T Consensus 3 ~LL~qEDTDgn~qITIeD 20 (30)
T PF07492_consen 3 SLLEQEDTDGNFQITIED 20 (30)
T ss_pred hHhhccccCCCcEEEEec
Confidence 455556777777777654
No 131
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=48.99 E-value=16 Score=21.73 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=14.9
Q ss_pred HHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 41 RLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 41 ~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
-+-.....||++++|.|+.-.++.
T Consensus 98 ~ln~Ll~vyD~~rtG~I~vls~Kv 121 (127)
T PF09068_consen 98 LLNWLLNVYDSQRTGKIRVLSFKV 121 (127)
T ss_dssp HHHHHHHHH-TT--SEEEHHHHHH
T ss_pred HHHHHHHHhCCCCCCeeehhHHHH
Confidence 355666777888888888777765
No 132
>KOG0169|consensus
Probab=48.23 E-value=35 Score=26.51 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=35.6
Q ss_pred HHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHHHHHHHHHhCCCCCCeeecc
Q psy11003 39 IRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPLVQRVIDIFDEDGNGEVDFK 92 (96)
Q Consensus 39 ~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~~~~~~~~~d~~~~g~i~~~ 92 (96)
...++..|+..+..++|.+...++.. -..++..+.+..+|..+..+ .+.++.+
T Consensus 171 ~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rpev~~~f~~~s~~-~~~ls~~ 224 (746)
T KOG0169|consen 171 ESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRPEVYFLFVQYSHG-KEYLSTD 224 (746)
T ss_pred HHHHHHHHHHHHhhccceehHHHHHHHHHhhccCchHHHHHHHHhCC-CCccCHH
Confidence 45677888888888888888888888 55666656666666655443 4444433
No 133
>KOG1954|consensus
Probab=47.32 E-value=21 Score=25.88 Aligned_cols=53 Identities=17% Similarity=0.137 Sum_probs=37.8
Q ss_pred HHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 42 LGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 42 l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
.-++|..+.+- +|+++-..-+. |-....+.+ +-++++..|.|.||.++=+||.
T Consensus 446 yde~fy~l~p~-~gk~sg~~ak~~mv~sklpnsvlgkiwklad~d~dg~ld~eefa 500 (532)
T KOG1954|consen 446 YDEIFYTLSPV-NGKLSGRNAKKEMVKSKLPNSVLGKIWKLADIDKDGMLDDEEFA 500 (532)
T ss_pred hHhhhhccccc-CceeccchhHHHHHhccCchhHHHhhhhhhcCCcccCcCHHHHH
Confidence 55677777664 68888766666 544333333 7788999999999999888873
No 134
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=46.63 E-value=28 Score=15.27 Aligned_cols=22 Identities=23% Similarity=0.551 Sum_probs=15.1
Q ss_pred HHHHHHHHHHhhhCCCCCCceeHHHHcC
Q psy11003 37 DEIRRLGKRFRKLDLDNSGALSIDEFMS 64 (96)
Q Consensus 37 ~~~~~l~~~F~~~D~~~~G~i~~~el~~ 64 (96)
.++..+...+. +|.||.+|+..
T Consensus 3 ~~L~~L~~l~~------~G~IseeEy~~ 24 (31)
T PF09851_consen 3 DRLEKLKELYD------KGEISEEEYEQ 24 (31)
T ss_pred HHHHHHHHHHH------cCCCCHHHHHH
Confidence 34556666665 68888888875
No 135
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=42.61 E-value=6.2 Score=23.99 Aligned_cols=40 Identities=28% Similarity=0.511 Sum_probs=16.7
Q ss_pred CceeHHHHcCchhcCC-C-HHHHHHHHHhCCCC-------CCeeecccc
Q psy11003 55 GALSIDEFMSLPELQQ-N-PLVQRVIDIFDEDG-------NGEVDFKGK 94 (96)
Q Consensus 55 G~i~~~el~~l~~l~~-~-~~~~~~~~~~d~~~-------~g~i~~~eF 94 (96)
+.++..||.+|-+... . ..+++++.++..+| .+.|+|+-|
T Consensus 6 ~~lsp~eF~qLq~y~eys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF 54 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEYSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGF 54 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----HHHHHHHH-HTSGGGGGEETTEE-HHHH
T ss_pred eccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCcCHHHH
Confidence 4556666666422111 1 12666666664322 346666665
No 136
>KOG0843|consensus
Probab=42.12 E-value=45 Score=21.45 Aligned_cols=44 Identities=14% Similarity=0.123 Sum_probs=32.4
Q ss_pred HhccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcCc-hhcCCCHH-HHHHH
Q psy11003 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQNPL-VQRVI 78 (96)
Q Consensus 30 ~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~l-~~l~~~~~-~~~~~ 78 (96)
..+.++.+|+.+|...|. +++||.-.|=++| ..|+...+ |+-||
T Consensus 105 ~RT~ft~~Ql~~LE~~F~-----~~~Yvvg~eR~~LA~~L~LsetQVkvWF 150 (197)
T KOG0843|consen 105 IRTAFTPEQLLKLEHAFE-----GNQYVVGAERKQLAQSLSLSETQVKVWF 150 (197)
T ss_pred cccccCHHHHHHHHHHHh-----cCCeeechHHHHHHHHcCCChhHhhhhh
Confidence 445789999999999997 4889988887774 55666555 44444
No 137
>PF10664 NdhM: Cyanobacterial and plastid NDH-1 subunit M; InterPro: IPR018922 The NADH dehydrogenase I complex shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in plants is believed to be plastoquinone. The NADH dehydrogenase I complex couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. This entry represents subunit M of the NADH dehydrogenase I complex in cyanobacteria and plant chloroplasts []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=41.45 E-value=40 Score=19.46 Aligned_cols=42 Identities=10% Similarity=0.375 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHhhhCCCCCCceeHHHHcC--chhcCCCHH--HHHHHHH
Q psy11003 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMS--LPELQQNPL--VQRVIDI 80 (96)
Q Consensus 35 ~~~~~~~l~~~F~~~D~~~~G~i~~~el~~--l~~l~~~~~--~~~~~~~ 80 (96)
+.+-+++++..|+.+=....| +++.. |+.+|.... ++.++..
T Consensus 40 ~~~~l~kVy~~F~eLVe~~~G----~~LtdYnLRrIGSdLE~~iR~LLq~ 85 (108)
T PF10664_consen 40 NEEALQKVYRKFDELVESYAG----EDLTDYNLRRIGSDLEHFIRSLLQA 85 (108)
T ss_pred CHHHHHHHHHHHHHHHHhhcC----CCchhhhHHHhccHHHHHHHHHHHC
Confidence 455677788888776555555 35555 677776665 6677663
No 138
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=40.31 E-value=89 Score=21.07 Aligned_cols=50 Identities=14% Similarity=0.296 Sum_probs=34.5
Q ss_pred HHhccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcCchhcCCCHH-HHHHHHHh
Q psy11003 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL-VQRVIDIF 81 (96)
Q Consensus 29 ~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~l~~l~~~~~-~~~~~~~~ 81 (96)
.....+|=++.+.++++++.++.+ +|.++..++-. ++|...+ +++.++.+
T Consensus 172 ~Ai~tLSySEleAv~~IL~~L~~~-egrlse~eLAe--rlGVSRs~ireAlrkL 222 (251)
T TIGR02787 172 MAINTLSYSELEAVEHIFEELDGN-EGLLVASKIAD--RVGITRSVIVNALRKL 222 (251)
T ss_pred HHHHhccHhHHHHHHHHHHHhccc-cccccHHHHHH--HHCCCHHHHHHHHHHH
Confidence 334457888999999999998764 69999998886 3333333 44444443
No 139
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.81 E-value=29 Score=20.82 Aligned_cols=36 Identities=17% Similarity=0.268 Sum_probs=24.4
Q ss_pred ccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcCchhc
Q psy11003 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPEL 68 (96)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~l~~l 68 (96)
..+|+++-+++....-.+-+ .+|.+|..++..+..+
T Consensus 3 ~~~T~eer~eLk~rIvElVR-e~GRiTi~ql~~~TGa 38 (127)
T PF06163_consen 3 RVFTPEEREELKARIVELVR-EHGRITIKQLVAKTGA 38 (127)
T ss_pred CcCCHHHHHHHHHHHHHHHH-HcCCccHHHHHHHHCC
Confidence 45677777766665555544 3799999998874443
No 140
>KOG0493|consensus
Probab=36.47 E-value=53 Score=22.45 Aligned_cols=44 Identities=20% Similarity=0.279 Sum_probs=31.7
Q ss_pred hccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcCc-hhcCCCHH-HHHHHH
Q psy11003 31 LNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQNPL-VQRVID 79 (96)
Q Consensus 31 ~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~l-~~l~~~~~-~~~~~~ 79 (96)
.+.|+.+|+++|+.-|+. +-|++.+--+.| .+|+.+.. ++-||.
T Consensus 250 RTAFtaeQL~RLK~EF~e-----nRYlTEqRRQ~La~ELgLNEsQIKIWFQ 295 (342)
T KOG0493|consen 250 RTAFTAEQLQRLKAEFQE-----NRYLTEQRRQELAQELGLNESQIKIWFQ 295 (342)
T ss_pred cccccHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHhCcCHHHhhHHhh
Confidence 456889999999999985 668877665554 56777665 555554
No 141
>KOG0998|consensus
Probab=36.44 E-value=24 Score=27.78 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHHhCCCCCCeeeccccc
Q psy11003 38 EIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDGNGEVDFKGKL 95 (96)
Q Consensus 38 ~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~d~~~~g~i~~~eFl 95 (96)
+...+...|+.+|+.++|.|+..+-.. +..-+...- +-.++...|..+.|.++...|.
T Consensus 9 ~q~~~~~~~~~~d~~~~G~i~g~~a~~f~~~s~L~~qvl~qiws~~d~~~~g~l~~q~f~ 68 (847)
T KOG0998|consen 9 GQPLFDQYFKSADPQGDGRITGAEAVAFLSKSGLPDQVLGQIWSLADSSGKGFLNRQGFY 68 (847)
T ss_pred ccchHHHhhhccCcccCCcccHHHhhhhhhccccchhhhhccccccccccCCcccccccc
Confidence 346677899999999999999999888 555444333 5566777787777888777764
No 142
>PF14297 DUF4373: Domain of unknown function (DUF4373)
Probab=36.43 E-value=57 Score=17.74 Aligned_cols=30 Identities=10% Similarity=0.351 Sum_probs=23.6
Q ss_pred cCCHHHHHHHHHHHhhhCCCCCCceeHHHH
Q psy11003 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEF 62 (96)
Q Consensus 33 ~~~~~~~~~l~~~F~~~D~~~~G~i~~~el 62 (96)
..+.+.++++..-|..||.+..|.++...+
T Consensus 57 ~~~~~~v~~II~~~~LF~~~~~~iltS~~I 86 (87)
T PF14297_consen 57 GVSEEYVEEIINEYGLFDIEEYGILTSEGI 86 (87)
T ss_pred CcCHHHHHHHHHHhCCcccCCCcEEechhh
Confidence 467888888888888999888777776654
No 143
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=35.31 E-value=79 Score=17.23 Aligned_cols=48 Identities=25% Similarity=0.470 Sum_probs=31.9
Q ss_pred ccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chh-cCCCHHHHHHHHHhC
Q psy11003 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPE-LQQNPLVQRVIDIFD 82 (96)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~-l~~~~~~~~~~~~~d 82 (96)
..++++++..++++|+.+=..+ .+.++-.. +.. .+..+.++.++.-+.
T Consensus 26 ~Gfs~~~i~~l~~ayr~l~~~~---~~~~~a~~~l~~~~~~~~~v~~~~~Fi~ 75 (83)
T PF13720_consen 26 RGFSKEEISALRRAYRILFRSG---LTLEEALEELEEEYPDSPEVREIVDFIR 75 (83)
T ss_dssp TTS-HHHHHHHHHHHHHHHTSS---S-HHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHhCC---CCHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 4589999999999999876532 46666666 655 555676666665443
No 144
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=33.73 E-value=27 Score=18.38 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=16.3
Q ss_pred hhhCCCCCCceeHHHHcCc
Q psy11003 47 RKLDLDNSGALSIDEFMSL 65 (96)
Q Consensus 47 ~~~D~~~~G~i~~~el~~l 65 (96)
+.+|...+.+|+.+++.+|
T Consensus 10 RLYDT~~s~YiTL~di~~l 28 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQL 28 (64)
T ss_pred ccccCCCceeEeHHHHHHH
Confidence 4678899999999999994
No 145
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=33.12 E-value=65 Score=19.87 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=20.7
Q ss_pred HhccCCHHHHHHHHHHHhhhCCCC
Q psy11003 30 SLNKIDADEIRRLGKRFRKLDLDN 53 (96)
Q Consensus 30 ~~~~~~~~~~~~l~~~F~~~D~~~ 53 (96)
+...+|++++++|..-...+|+++
T Consensus 20 lL~~LS~EEL~~L~~el~e~DPd~ 43 (147)
T PF03250_consen 20 LLAKLSPEELEELENELEEMDPDN 43 (147)
T ss_pred HHHhCCHHHHHHHHHHHHhhCCCc
Confidence 445789999999999999999975
No 146
>KOG1264|consensus
Probab=33.10 E-value=43 Score=26.76 Aligned_cols=62 Identities=16% Similarity=0.263 Sum_probs=42.8
Q ss_pred cCCHHHHH-HHHHHHhhhCCCCCCceeHHHHcC-chhcCCCHH-HHHHHHHh--CCCCCCeeecccc
Q psy11003 33 KIDADEIR-RLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIF--DEDGNGEVDFKGK 94 (96)
Q Consensus 33 ~~~~~~~~-~l~~~F~~~D~~~~G~i~~~el~~-l~~l~~~~~-~~~~~~~~--d~~~~g~i~~~eF 94 (96)
.+++.+++ .++..+...|......|+..+++. +++.+...+ .+.+...+ |.-..+.++|++|
T Consensus 136 a~~p~qI~~wlrk~~ysvd~~~~~~isard~k~~l~qvn~k~~~~kfl~e~~ted~~~k~dlsf~~f 202 (1267)
T KOG1264|consen 136 APTPLQIERWLRKQIYSVDQTRENSISARDLKTILPQVNFKVSSAKFLKEKFTEDGARKDDLSFEQF 202 (1267)
T ss_pred CCChHHHHHHHHhhheeccchhhhheeHHhhhcccccceEEechHHHHHHHHhHhhhccccccHHHH
Confidence 34566665 678888888988888899999999 888776554 22222333 3334567888877
No 147
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=32.49 E-value=65 Score=15.36 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhCC--CCCCceeHHHHcC
Q psy11003 38 EIRRLGKRFRKLDL--DNSGALSIDEFMS 64 (96)
Q Consensus 38 ~~~~l~~~F~~~D~--~~~G~i~~~el~~ 64 (96)
-+..+...|..|.. .....++..|++.
T Consensus 4 ai~~iI~vFhkYa~~~Gd~~~Lsk~Elk~ 32 (44)
T PF01023_consen 4 AIETIIDVFHKYAGKEGDKDTLSKKELKE 32 (44)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSEEHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCCeEcHHHHHH
Confidence 35678888888863 3366899999998
No 148
>TIGR02574 stabl_TIGR02574 putative addiction module component, TIGR02574 family. Members of this family are bacterial proteins, typically are about 75 amino acids long, always found as part of a pair (at least) of two small genes. The other in the pair always belongs to a subfamily of the larger family pfam05016 (although not necessarily scoring above the designated cutoff), which contains plasmid stabilization proteins. It is likely that this protein and its pfam05016 member partner comprise some form of addiction module, although these gene pairs usually are found on the bacterial main chromosome.
Probab=32.40 E-value=76 Score=16.25 Aligned_cols=33 Identities=18% Similarity=0.265 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-ch
Q psy11003 34 IDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LP 66 (96)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~ 66 (96)
++....+.+.+.+..+..+....++.+++.. ++
T Consensus 28 ~~~~~~~el~~R~~~~~~g~~~~i~~eev~~~ir 61 (63)
T TIGR02574 28 LTEAQKAELDRRLADYKADPSKASPWEEVRARIR 61 (63)
T ss_pred CCHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHH
Confidence 3566777888888888888888888888776 43
No 149
>PF05383 La: La domain; InterPro: IPR006630 Human Ro ribonucleoproteins (RNPs) are composed of one of the four small Y RNAs and at least two proteins, Ro60 and La. The La protein is a 47 kDa polypeptide that frequently acts as an autoantigen in systemic lupus erythematosus and Sjogren's syndrome []. In the nucleus, La acts as a RNA polymerase III (RNAP III) transcription factor, while in the cytoplasm, La acts as a translation factor []. In the nucleus, La binds to the 3'UTR of nascent RNAP III transcripts to assist in folding and maturation []. In the cytoplasm, La recognises specific classes of mRNAs that contain a 5'-terminal oligopyrimidine (5'TOP) motif known to control protein synthesis []. The specific recognition is mediated by the N-terminal domain of La, which comprises a La motif and a RNA recognition motif (RRM). The La motif adopts an alpha/beta fold that comprises a winged-helix motif []. Homologous La domain-containing proteins have been identified in a wide range of organisms except Archaea, bacteria and viruses [].; PDB: 1S29_A 1YTY_B 2VOO_B 1S7A_A 2VOP_A 2VON_B 1ZH5_B 2VOD_A 2CQK_A.
Probab=31.87 E-value=79 Score=16.19 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=16.7
Q ss_pred HHHhhhCCCCCCceeHHHHcCc
Q psy11003 44 KRFRKLDLDNSGALSIDEFMSL 65 (96)
Q Consensus 44 ~~F~~~D~~~~G~i~~~el~~l 65 (96)
-....++.+.+|+|+.+.+..+
T Consensus 19 fL~~~~~~~~~g~Vpi~~i~~F 40 (61)
T PF05383_consen 19 FLRSQMDSNPDGWVPISTILSF 40 (61)
T ss_dssp HHHHHHCTTTTTBEEHHHHTTS
T ss_pred HHHHHHHhcCCCcEeHHHHHch
Confidence 3445567778999999998884
No 150
>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases. It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....
Probab=29.45 E-value=48 Score=16.43 Aligned_cols=34 Identities=24% Similarity=0.439 Sum_probs=18.4
Q ss_pred HhhhCCCCCCceeHHHHcC-chhcCCC-HH-HHHHHH
Q psy11003 46 FRKLDLDNSGALSIDEFMS-LPELQQN-PL-VQRVID 79 (96)
Q Consensus 46 F~~~D~~~~G~i~~~el~~-l~~l~~~-~~-~~~~~~ 79 (96)
|+.+.+.++|.+|.+|+.. ++..... +. ++++++
T Consensus 12 ~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR 48 (51)
T PF08100_consen 12 PDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMR 48 (51)
T ss_dssp HHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHH
Confidence 3334344468899999988 7742222 22 566654
No 151
>KOG2278|consensus
Probab=29.37 E-value=90 Score=20.05 Aligned_cols=37 Identities=14% Similarity=0.455 Sum_probs=22.8
Q ss_pred hCCCCCCceeHHHHcCchhcCC-CHHHHHHHHHhCCCC
Q psy11003 49 LDLDNSGALSIDEFMSLPELQQ-NPLVQRVIDIFDEDG 85 (96)
Q Consensus 49 ~D~~~~G~i~~~el~~l~~l~~-~~~~~~~~~~~d~~~ 85 (96)
+.-++||+++.+++..+++... +-+++++.+..+.+.
T Consensus 27 L~m~~dGfvpv~~lL~lnq~r~~~~t~ddi~riVk~nd 64 (207)
T KOG2278|consen 27 LNMRGDGFVPVEDLLNLNQFRGANHTIDDIRRIVKRND 64 (207)
T ss_pred ccccCCCceEHHHHhccchhcccCCcHHHHHHHHhccc
Confidence 3457899999999999655432 223444444444433
No 152
>PF01885 PTS_2-RNA: RNA 2'-phosphotransferase, Tpt1 / KptA family; InterPro: IPR002745 The final step of tRNA splicing in Saccharomyces cerevisiae (Baker's yeast) requires 2'-phosphotransferase (Tpt1) to transfer the 2'-phosphate from ligated tRNA to NAD, producing mature tRNA and ADP ribose-1' '-2' '-cyclic phosphate. Yeast and Mus musculus (Mouse) Tpt1 protein and bacterial KptA protein can catalyze the conversion of the generated intermediate to both product and the original substrate, these enzymes likely use the same reaction mechanism. Step 1 of this reaction is strikingly similar to the ADP-ribosylation of proteins catalyzed by a number of bacterial toxins. KptA, a functional Tpt1 protein homologue from Escherichia coli is strikingly similar to yeast Tpt1 in its kinetic parameters, although E. coli is not known to have a 2'-phosphorylated RNA substrate [,].; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation; PDB: 1WFX_A.
Probab=29.31 E-value=42 Score=21.33 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=15.7
Q ss_pred CCCCCCceeHHHHcC-chhcCCCHH---HHHHHHH
Q psy11003 50 DLDNSGALSIDEFMS-LPELQQNPL---VQRVIDI 80 (96)
Q Consensus 50 D~~~~G~i~~~el~~-l~~l~~~~~---~~~~~~~ 80 (96)
..+.+|+++.+++.. +..-+...+ ++++...
T Consensus 26 ~~d~~G~v~v~dLL~~~~~~~~~~t~~~i~~vV~~ 60 (186)
T PF01885_consen 26 VMDPDGWVSVDDLLRALRFKGLWVTEEDIREVVET 60 (186)
T ss_dssp ---TT--EEHHHHHHHHHHT-TT--HHHHHHHHHH
T ss_pred ccCCCCCEeHHHHHHHHHHcCCCCCHHHHHHHHhh
Confidence 356799999999998 554444444 5555544
No 153
>PRK00819 RNA 2'-phosphotransferase; Reviewed
Probab=28.44 E-value=70 Score=20.29 Aligned_cols=41 Identities=20% Similarity=0.365 Sum_probs=22.2
Q ss_pred CCCCCceeHHHHcC-chhcCCCHHHHHHHHHhCCCCCCeeec
Q psy11003 51 LDNSGALSIDEFMS-LPELQQNPLVQRVIDIFDEDGNGEVDF 91 (96)
Q Consensus 51 ~~~~G~i~~~el~~-l~~l~~~~~~~~~~~~~d~~~~g~i~~ 91 (96)
.|.+|+++.+++.. +...+...+.+.+-+.+..|..+...+
T Consensus 28 ld~~G~v~v~~Ll~~~~~~~~~~t~~~l~~vV~~d~K~Rf~l 69 (179)
T PRK00819 28 LDEEGWVDIDALIEALAKAYKWVTRELLEAVVESDDKGRFEI 69 (179)
T ss_pred cCCCCCEEHHHHHHHHHHccCCCCHHHHHHHHHcCCCcceEe
Confidence 36699999999998 643332223333333333333444433
No 154
>PF06569 DUF1128: Protein of unknown function (DUF1128); InterPro: IPR009507 This family consists of several short, hypothetical bacterial proteins of unknown function.
Probab=26.96 E-value=58 Score=17.51 Aligned_cols=36 Identities=14% Similarity=0.202 Sum_probs=24.6
Q ss_pred ccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC-chhcC
Q psy11003 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQ 69 (96)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~-l~~l~ 69 (96)
..++...-+.|+++|...-+ .+..|.+|... ..+||
T Consensus 31 ~~f~~~~yedl~diy~~V~~--K~~fS~sEm~aI~~ELG 67 (71)
T PF06569_consen 31 EDFSEEKYEDLKDIYEMVMS--KDSFSPSEMQAIAEELG 67 (71)
T ss_pred HhCChhhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHH
Confidence 34566666777777777655 67788888877 45554
No 155
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=24.81 E-value=67 Score=18.90 Aligned_cols=52 Identities=13% Similarity=0.226 Sum_probs=28.7
Q ss_pred HHHhccCCHHHHHHHHHHHhhhCC-----CCCCceeHHHHcC-c-hhcCCCHHHHHHHH
Q psy11003 28 NLSLNKIDADEIRRLGKRFRKLDL-----DNSGALSIDEFMS-L-PELQQNPLVQRVID 79 (96)
Q Consensus 28 ~~~~~~~~~~~~~~l~~~F~~~D~-----~~~G~i~~~el~~-l-~~l~~~~~~~~~~~ 79 (96)
.++...+++++.+++.+....++. ...|.+.+.-+-. . ..+..+..+...+.
T Consensus 32 LvI~~~Ltkeevee~~~lce~l~ee~~~QKAeG~v~F~pLl~~F~~~L~~~L~~~eti~ 90 (113)
T PF08963_consen 32 LVIRKGLTKEEVEEFLRLCEELSEELEEQKAEGFVIFDPLLAQFAGMLHEKLDVHETIE 90 (113)
T ss_dssp HHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHS-TTS-HHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHhhcCccCCHHHHHH
Confidence 355667889999988888887775 3478888777766 3 44555544444433
No 156
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=24.69 E-value=2.1e+02 Score=18.96 Aligned_cols=56 Identities=20% Similarity=0.386 Sum_probs=33.1
Q ss_pred ccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcCch-hcCCCHHHHHHHHHhCCCCCCee
Q psy11003 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLP-ELQQNPLVQRVIDIFDEDGNGEV 89 (96)
Q Consensus 32 ~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~l~-~l~~~~~~~~~~~~~d~~~~g~i 89 (96)
..++++++..++++|+.+=+. |.-..+.+.++. .....+.++.+++-+...+-|.+
T Consensus 202 ~~~~~~~~~~i~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~rg~~ 258 (262)
T PRK05289 202 RGFSREEIHALRRAYKLLYRS--GLTLEEALEELAEEYPDSPEVKEILDFIESSKRGII 258 (262)
T ss_pred CCCCHHHHHHHHHHHHHHHHc--CccHHHHHHHHHhhccCCHHHHHHHHHHhcCCCCCC
Confidence 358899999999999977652 332233333333 33445556666666554444443
No 157
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=23.67 E-value=2.4e+02 Score=19.12 Aligned_cols=54 Identities=26% Similarity=0.403 Sum_probs=34.0
Q ss_pred hccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcC--chhcCCCHHHHHHHHHhCCCCCC
Q psy11003 31 LNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS--LPELQQNPLVQRVIDIFDEDGNG 87 (96)
Q Consensus 31 ~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~--l~~l~~~~~~~~~~~~~d~~~~g 87 (96)
...++++++..|+++|+.+=+. -.+.+|-.. +......+.++.+.+-+.....|
T Consensus 202 Rrgf~~e~i~alr~ayk~lfr~---~~~~~e~~~~i~~~~~~~~~v~~~~dFi~~s~r~ 257 (260)
T COG1043 202 RRGFSREEIHALRKAYKLLFRS---GLTLREALEEIAEEYADNPEVKEFIDFIASSSRG 257 (260)
T ss_pred ccCCCHHHHHHHHHHHHHHeeC---CCCHHHHHHHHHHHhcCChHHHHHHHHHhhcccc
Confidence 3467899999999999977542 234444444 34455666676666655544443
No 158
>KOG0488|consensus
Probab=23.29 E-value=1.3e+02 Score=20.84 Aligned_cols=45 Identities=24% Similarity=0.288 Sum_probs=32.5
Q ss_pred HHhccCCHHHHHHHHHHHhhhCCCCCCceeHHHHcCc-hhcCCCHH-HHHHH
Q psy11003 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQNPL-VQRVI 78 (96)
Q Consensus 29 ~~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~l-~~l~~~~~-~~~~~ 78 (96)
...+.||..|+.+|.+.|.. ..|++..|=..| ..||..-. |+-||
T Consensus 174 ksRTaFT~~Ql~~LEkrF~~-----QKYLS~~DR~~LA~~LgLTdaQVKtWf 220 (309)
T KOG0488|consen 174 KSRTAFSDHQLFELEKRFEK-----QKYLSVADRIELAASLGLTDAQVKTWF 220 (309)
T ss_pred cchhhhhHHHHHHHHHHHHH-----hhcccHHHHHHHHHHcCCchhhHHHHH
Confidence 34557899999999999985 679999988774 55665433 44444
No 159
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=23.25 E-value=1.2e+02 Score=15.35 Aligned_cols=55 Identities=16% Similarity=0.323 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHhhhCCCCCCceeHHHHcCchhcCCCH-HHHHHHHHhCCCCCCeeecccc
Q psy11003 34 IDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNP-LVQRVIDIFDEDGNGEVDFKGK 94 (96)
Q Consensus 34 ~~~~~~~~l~~~F~~~D~~~~G~i~~~el~~l~~l~~~~-~~~~~~~~~d~~~~g~i~~~eF 94 (96)
+++...+.|+.+|.... ..+.++..++-+ .++..+ ++-++++.+.. .|-|.++.+
T Consensus 2 Lt~~~e~YL~~Iy~l~~--~~~~v~~~~iA~--~L~vs~~tvt~ml~~L~~--~GlV~~~~y 57 (60)
T PF01325_consen 2 LTESEEDYLKAIYELSE--EGGPVRTKDIAE--RLGVSPPTVTEMLKRLAE--KGLVEYEPY 57 (60)
T ss_dssp CSCHHHHHHHHHHHHHH--CTSSBBHHHHHH--HHTS-HHHHHHHHHHHHH--TTSEEEETT
T ss_pred CCcHHHHHHHHHHHHHc--CCCCccHHHHHH--HHCCChHHHHHHHHHHHH--CCCEEecCC
Confidence 34455677888888776 578888888875 233333 35555555543 355655543
Done!