RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11003
(96 letters)
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 77.7 bits (192), Expect = 6e-20
Identities = 52/58 (89%), Positives = 57/58 (98%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGEVDFK 92
DADEI+RLGKRF+KLDLDNSG+LS++EFMSLPELQQNPLVQRVIDIFD DGNGEVDFK
Sbjct: 1 DADEIKRLGKRFKKLDLDNSGSLSVEEFMSLPELQQNPLVQRVIDIFDTDGNGEVDFK 58
Score = 30.3 bits (69), Expect = 0.058
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEF---------MSLPELQQNPLVQRVIDIFDEDG 85
D+ ++L FR D+D G +S E +L + Q +V + I D+DG
Sbjct: 70 KGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDG 129
Query: 86 NGEVDF 91
+G + F
Sbjct: 130 DGRISF 135
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous
protein, calcium-binding protein, NHE1 regulating
protein; 2.70A {Homo sapiens}
Length = 202
Score = 75.9 bits (187), Expect = 8e-19
Identities = 22/58 (37%), Positives = 29/58 (50%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGEVDFK 92
+ RL RFR LD + G LS + + L NPL R+I+ F DG+ VDF
Sbjct: 24 SQASLLRLHHRFRALDRNKKGYLSRMDLQQIGALAVNPLGDRIIESFFPDGSQRVDFP 81
Score = 30.5 bits (69), Expect = 0.045
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 46 FRKLDLDNSGALSIDEF---------MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
F+ DLD G +S E + + E Q + R + DEDG+G V F
Sbjct: 120 FQLYDLDRDGKISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSF 174
Score = 24.7 bits (54), Expect = 5.9
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 32 NKIDADEIRRLGKR-FRKLDLDNSGALSIDEFM 63
++ +++ + R ++ D D GA+S EF
Sbjct: 146 VQVTEEQLENIADRTVQEADEDGDGAVSFVEFT 178
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein;
2.20A {Rattus norvegicus} PDB: 2e30_A
Length = 208
Score = 76.0 bits (187), Expect = 9e-19
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGEVDFK 92
+I RL RF LD +G LS ++F +PEL NPL R+I+ F +G +V+F+
Sbjct: 24 SHSQITRLYSRFTSLDKGENGTLSREDFQRIPELAINPLGDRIINAFFSEGEDQVNFR 81
Score = 32.8 bits (75), Expect = 0.006
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 46 FRKLDLDNSGALSIDEF---------MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
FR DLD +S DE +++ + Q + R I D+DG+ + F
Sbjct: 119 FRLYDLDKDDKISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISF 173
Score = 26.3 bits (58), Expect = 1.4
Identities = 9/44 (20%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 32 NKIDADEIRRLGKR-FRKLDLDNSGALSIDEF---MSLPELQQN 71
I +++ + R ++ D D A+S EF + +++Q
Sbjct: 145 VNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEKVDVEQK 188
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding
domain, structural genomics, structural genomics
consortium, SGC; 2.30A {Homo sapiens}
Length = 91
Score = 60.4 bits (147), Expect = 7e-14
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 27 LNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL-PELQQNPL-VQRVIDIFDED 84
L D +E+ RL F D + SG L +EF +L EL+ P + V D D
Sbjct: 14 LYFQGADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQRLDAD 73
Query: 85 GNGEVDF 91
+G + F
Sbjct: 74 RDGAITF 80
Score = 27.3 bits (61), Expect = 0.38
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 11/44 (25%)
Query: 33 KIDADEIRRLGKR-----------FRKLDLDNSGALSIDEFMSL 65
+++ +E R L F++LD D GA++ EF
Sbjct: 43 RLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARG 86
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound
to SOS3 (EF-hands 1 and 4 FISL motif; 2.10A
{Arabidopsis thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 60.2 bits (146), Expect = 9e-13
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 35 DADEIRRLGKRFRKLD--LDNSGALSIDEF---MSLPELQQNPLVQRVIDIFDEDGNGEV 89
+E+ L + F+KL + + G + +EF + ++N R+ D+FD NG +
Sbjct: 32 TVEEVEALYELFKKLSSSIIDDGLIHKEEFQLALFRNRNRRNLFADRIFDVFDVKRNGVI 91
Query: 90 DFK 92
+F
Sbjct: 92 EFG 94
Score = 32.8 bits (75), Expect = 0.008
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 12/75 (16%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF------------MSLPELQQNPLVQR 76
L + A ++ F+ DL +G + +E + L E +V +
Sbjct: 100 LGVFHPSAPVHEKVKFAFKLYDLRQTGFIEREELKEMVVALLHESELVLSEDMIEVMVDK 159
Query: 77 VIDIFDEDGNGEVDF 91
D +G++D
Sbjct: 160 AFVQADRKNDGKIDI 174
Score = 26.7 bits (59), Expect = 0.97
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDI 80
F + D N G + IDE+ + NP + + + +
Sbjct: 161 FVQADRKNDGKIDIDEWKDF--VSLNPSLIKNMTL 193
>2l4h_A Calcium and integrin-binding protein 1; metal binding protei; NMR
{Homo sapiens} PDB: 2l4i_A 2lm5_A
Length = 214
Score = 58.7 bits (142), Expect = 3e-12
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 35 DADEIRRLGKRFRKL--------DLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDED-G 85
EI +RF +L + + ++ +SLPEL+ NP +R+ +F
Sbjct: 46 TKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPA 105
Query: 86 NGEVDFK 92
+ F+
Sbjct: 106 KDSLSFE 112
Score = 29.8 bits (67), Expect = 0.084
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 13/76 (17%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF-------------MSLPELQQNPLVQ 75
LS+ A + FR D D+ G L+ ++ L + L+
Sbjct: 118 LSVFSDTATPDIKSHYAFRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLID 177
Query: 76 RVIDIFDEDGNGEVDF 91
+++ D D +G ++
Sbjct: 178 NILEESDIDRDGTINL 193
Score = 27.9 bits (62), Expect = 0.47
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 32 NKIDADEIRRLGKR-FRKLDLDNSGALSIDEFM 63
++ A E+++L + D+D G +++ EF
Sbjct: 165 TRLSASEMKQLIDNILEESDIDRDGTINLSEFQ 197
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 57.1 bits (138), Expect = 1e-11
Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 35 DADEIRRLGKRFRKLD--LDNSGALSIDEF---MSLPELQQNPLVQRVIDIFDEDGNGEV 89
EI L + F+K+ + + G ++ +EF + +++ RV D+FD NG +
Sbjct: 43 SVSEIEALYELFKKISSAVIDDGLINKEEFQLALFKTNKKESLFADRVFDLFDTKHNGIL 102
Query: 90 DFK 92
F+
Sbjct: 103 GFE 105
Score = 31.7 bits (72), Expect = 0.017
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 12/75 (16%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF------------MSLPELQQNPLVQR 76
LS+ +A ++ F+ DL G + E M+L + ++ +
Sbjct: 111 LSVFHPNAPIDDKIHFSFQLYDLKQQGFIERQEVKQMVVATLAESGMNLKDTVIEDIIDK 170
Query: 77 VIDIFDEDGNGEVDF 91
+ D +G++D
Sbjct: 171 TFEEADTKHDGKIDK 185
Score = 27.1 bits (60), Expect = 0.78
Identities = 7/35 (20%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDI 80
F + D + G + +E+ SL + ++P + + + +
Sbjct: 172 FEEADTKHDGKIDKEEWRSL--VLRHPSLLKNMTL 204
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2);
EF-hand, calcium-binding protein, guanylyl cyclase
regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 55.6 bits (134), Expect = 3e-11
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 6/62 (9%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDGNGEVD 90
DA +++ K+F L+ SG L + EF ++ N V+ + FD +G+ +D
Sbjct: 20 DAAQLQEWYKKF--LEECPSGTLFMHEFKRFFKVPDNEEATQYVEAMFRAFDTNGDNTID 77
Query: 91 FK 92
F
Sbjct: 78 FL 79
Score = 27.5 bits (61), Expect = 0.59
Identities = 8/37 (21%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFD 82
F +D + G LS++EF+ +++ V +++ +
Sbjct: 154 FLLVDENGDGQLSLNEFVEG--ARRDKWVMKMLQMDL 188
Score = 25.2 bits (55), Expect = 3.3
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 21/67 (31%)
Query: 46 FRKLDLDNSGALSIDEF---------------------MSLPELQQNPLVQRVIDIFDED 84
F+ D D +G + E L +V R+ + DE+
Sbjct: 101 FKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDEN 160
Query: 85 GNGEVDF 91
G+G++
Sbjct: 161 GDGQLSL 167
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR
{Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A
1y1a_A*
Length = 183
Score = 55.2 bits (133), Expect = 5e-11
Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 35 DADEIRRLGKRFRKL--------DLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDED-G 85
EI +RF +L + + ++ +SLPEL+ NP +R+ +F
Sbjct: 15 TKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILSLPELKANPFKERICRVFSTSPA 74
Query: 86 NGEVDFK 92
+ F+
Sbjct: 75 KDSLSFE 81
Score = 29.7 bits (67), Expect = 0.092
Identities = 11/60 (18%), Positives = 23/60 (38%), Gaps = 13/60 (21%)
Query: 46 FRKLDLDNSGALSIDEF-------------MSLPELQQNPLVQRVIDIFDEDGNGEVDFK 92
FR D D+ G L+ ++ L + L+ +++ D D +G ++
Sbjct: 104 FRIFDFDDDGTLNREDLSRLVNCLTGEGEDTRLSASEMKQLIDNILEESDIDRDGTINLS 163
Score = 27.0 bits (60), Expect = 0.84
Identities = 10/50 (20%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 32 NKIDADEIRRLGKR-FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDI 80
++ A E+++L + D+D G +++ EF + + ++P I
Sbjct: 134 TRLSASEMKQLIDNILEESDIDRDGTINLSEFQHV--ISRSPDFASSFKI 181
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 53.2 bits (128), Expect = 2e-10
Identities = 17/68 (25%), Positives = 34/68 (50%), Gaps = 7/68 (10%)
Query: 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQ-----NPLVQRVIDIFDED 84
++ ++ A E + K+F + SG L++ EF L+ N V+++ + FD +
Sbjct: 7 AVEELSATECHQWYKKF--MTECPSGQLTLYEFKQFFGLKNLSPSANKYVEQMFETFDFN 64
Query: 85 GNGEVDFK 92
+G +DF
Sbjct: 65 KDGYIDFM 72
Score = 27.8 bits (62), Expect = 0.37
Identities = 11/57 (19%), Positives = 22/57 (38%), Gaps = 11/57 (19%)
Query: 46 FRKLDLDNSGALSIDEFMSL-----------PELQQNPLVQRVIDIFDEDGNGEVDF 91
F+ D+D +G + E +++ + V D D +G+GE+
Sbjct: 94 FKLYDVDGNGCIDRGELLNIIKAIRAINRCNEAMTAEEFTNMVFDKIDINGDGELSL 150
Score = 27.4 bits (61), Expect = 0.54
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIF 81
F K+D++ G LS++EFM +Q++ ++ ++
Sbjct: 137 FDKIDINGDGELSLEEFMEG--VQKDEVLLDILTRS 170
Score = 24.0 bits (52), Expect = 9.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 46 FRKLDLDNSGALSIDEFMS-LPELQQNPLVQRVIDIF---DEDGNGEVD 90
F D + G + E+++ L + + + Q++ F D DGNG +D
Sbjct: 58 FETFDFNKDGYIDFMEYVAALSLVLKGKVDQKLRWYFKLYDVDGNGCID 106
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 52.5 bits (126), Expect = 6e-10
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDGNG 87
+ E + F + SG ++ EF +L + N + +V + FD + +G
Sbjct: 15 AVPTQETHVWYRTF--MMEYPSGLQTLHEFKTLLGLQGLNQKANKHIDQVYNTFDTNKDG 72
Query: 88 EVDFK 92
VDF
Sbjct: 73 FVDFL 77
Score = 29.8 bits (67), Expect = 0.11
Identities = 11/72 (15%), Positives = 25/72 (34%), Gaps = 12/72 (16%)
Query: 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF----------MSLPELQQNPLVQRVID 79
+ + ++ +L F+ D D +G++ +E L + V
Sbjct: 85 LIMQEKMEQ--KLKWYFKLYDADGNGSIDKNELLDMFMAVQALNGQQTLSPEEFINLVFH 142
Query: 80 IFDEDGNGEVDF 91
D + +GE+
Sbjct: 143 KIDINNDGELTL 154
Score = 29.0 bits (65), Expect = 0.19
Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDI-FDEDGNGEVDFKGK 94
F K+D++N G L+++EF++ + ++ + ++ FD V GK
Sbjct: 141 FHKIDINNDGELTLEEFING--MAKDQDLLEIVYKSFDFSNVLRVICNGK 188
Score = 25.5 bits (56), Expect = 2.5
Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 46 FRKLDLDNSGALSIDEFM-SLPELQQNPLVQRVI---DIFDEDGNGEVDFK 92
+ D + G + EF+ ++ + Q + Q++ ++D DGNG +D
Sbjct: 63 YNTFDTNKDGFVDFLEFIAAVNLIMQEKMEQKLKWYFKLYDADGNGSIDKN 113
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos
taurus} SCOP: a.39.1.5
Length = 193
Score = 52.2 bits (125), Expect = 7e-10
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDGNG 87
EI+ K F + SG LS++EF P + + V FD +G+G
Sbjct: 21 DFTEHEIQEWYKGFLRDC--PSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDG 78
Query: 88 EVDFK 92
+DF+
Sbjct: 79 TIDFR 83
Score = 27.5 bits (61), Expect = 0.50
Identities = 10/35 (28%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDI 80
FR++D + G LS++EF+ + +P + R++
Sbjct: 153 FRQMDTNRDGKLSLEEFIRG--AKSDPSIVRLLQC 185
Score = 27.1 bits (60), Expect = 0.70
Identities = 12/67 (17%), Positives = 22/67 (32%), Gaps = 16/67 (23%)
Query: 41 RLGKRFRKLDLDNSGALSIDEF----------------MSLPELQQNPLVQRVIDIFDED 84
+L F DLD +G +S E M E +++ D +
Sbjct: 100 KLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTPEKRTEKIFRQMDTN 159
Query: 85 GNGEVDF 91
+G++
Sbjct: 160 RDGKLSL 166
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on
protein STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 51.9 bits (124), Expect = 1e-09
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDGNG 87
K +E+ + F K +G ++ +F S+ P+ Q V FD + +G
Sbjct: 29 KFSEEELCSWYQSFLKDC--PTGRITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDG 86
Query: 88 EVDFK 92
+DFK
Sbjct: 87 TLDFK 91
Score = 27.6 bits (61), Expect = 0.52
Identities = 6/35 (17%), Positives = 14/35 (40%), Gaps = 2/35 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDI 80
++ ++ L+ EF+ N + R+I
Sbjct: 163 WKYFGKNDDDKLTEKEFIEG--TLANKEILRLIQF 195
Score = 27.3 bits (60), Expect = 0.78
Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 18/69 (26%)
Query: 41 RLGKRFRKLDLDNSGALSIDEFMSL------------------PELQQNPLVQRVIDIFD 82
+L F D+D +G +S +E + + E +++ F
Sbjct: 108 KLEWAFSLYDVDGNGTISKNEVLEIVMAIFKMITPEDVKLLPDDENTPEKRAEKIWKYFG 167
Query: 83 EDGNGEVDF 91
++ + ++
Sbjct: 168 KNDDDKLTE 176
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal
binding protein; HET: MYR; NMR {Schizosaccharomyces
pombe}
Length = 190
Score = 49.8 bits (119), Expect = 5e-09
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDGNG 87
+ D E+++ K F K SG L+ EF P + + V ++FD D NG
Sbjct: 21 RFDKKELQQWYKGFFKDC--PSGHLNKSEFQKIYKQFFPFGDPSAFAEYVFNVFDADKNG 78
Query: 88 EVDFKG 93
+DFK
Sbjct: 79 YIDFKE 84
Score = 31.7 bits (72), Expect = 0.019
Identities = 8/37 (21%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFD 82
F +D + G L+++EF +++P + + ++D
Sbjct: 153 FNMMDKNKDGQLTLEEFCEG--SKRDPTIVSALSLYD 187
Score = 27.5 bits (61), Expect = 0.55
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 16/67 (23%)
Query: 41 RLGKRFRKLDLDNSGALSIDEF----------------MSLPELQQNPLVQRVIDIFDED 84
+L F+ DLDN+G +S DE + E V ++ ++ D++
Sbjct: 100 KLIWAFQLYDLDNNGLISYDEMLRIVDAIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKN 159
Query: 85 GNGEVDF 91
+G++
Sbjct: 160 KDGQLTL 166
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 48.3 bits (115), Expect = 3e-08
Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDGNG 87
K E++ L + F+ SG ++ + F + P+ + + FD D NG
Sbjct: 60 KFTKKELQILYRGFKNEC--PSGVVNEETFKEIYSQFFPQGDSTTYAHFLFNAFDTDHNG 117
Query: 88 EVDFK 92
V F+
Sbjct: 118 AVSFE 122
Score = 31.0 bits (70), Expect = 0.031
Identities = 11/37 (29%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFD 82
F+K+D + G ++IDEF+ Q++ + R + +F+
Sbjct: 192 FQKMDKNKDGVVTIDEFIES--CQKDENIMRSMQLFE 226
Score = 29.9 bits (67), Expect = 0.084
Identities = 10/62 (16%), Positives = 19/62 (30%), Gaps = 16/62 (25%)
Query: 46 FRKLDLDNSGALSIDEF----------------MSLPELQQNPLVQRVIDIFDEDGNGEV 89
F D++ G ++ +E L E V+ D++ +G V
Sbjct: 144 FNLYDINKDGYITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVV 203
Query: 90 DF 91
Sbjct: 204 TI 205
>3e3r_A Calcyphosin, calcyphosine; human calcyphosine, EF-hand,
phosphoprotein, calcium binding; 2.65A {Homo sapiens}
Length = 204
Score = 47.7 bits (114), Expect = 3e-08
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 31 LNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGN 86
A I+ L + FR+LD D S +L DEF L +L + V +D +G+
Sbjct: 28 CLSRGASGIQGLARFFRQLDRDGSRSLDADEFRQGLAKLGLVLDQAEAEGVCRKWDRNGS 87
Query: 87 GEVDF 91
G +D
Sbjct: 88 GTLDL 92
Score = 32.7 bits (75), Expect = 0.007
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 12/77 (15%)
Query: 27 LNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLV-----------Q 75
L + + F KLD G +++D+ + + +P V +
Sbjct: 96 LRALRPPMSQAREAVIAAAFAKLDRSGDGVVTVDDLRGVYSGRAHPKVRSGEWTEDEVLR 155
Query: 76 RVIDIFDE-DGNGEVDF 91
R +D FD + +G+V
Sbjct: 156 RFLDNFDSSEKDGQVTL 172
Score = 32.7 bits (75), Expect = 0.008
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 7/64 (10%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL--PELQQNP--LVQRVIDIFDEDGNGE 88
+D E + RK D + SG L ++EF+ P + Q ++ D G+G
Sbjct: 69 VLDQAEAEGV---CRKWDRNGSGTLDLEEFLRALRPPMSQAREAVIAAAFAKLDRSGDGV 125
Query: 89 VDFK 92
V
Sbjct: 126 VTVD 129
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 47.5 bits (113), Expect = 3e-08
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDGNGEV 89
E+++ K F K SG L F P V ++FDE+ +G +
Sbjct: 23 TEKEVQQWYKGFIKDC--PSGQLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRI 80
Query: 90 DF 91
+F
Sbjct: 81 EF 82
Score = 31.4 bits (71), Expect = 0.022
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFD 82
F +D + G L++ EF + +P + + + ++D
Sbjct: 153 FAMMDKNADGKLTLQEFQEG--SKADPSIVQALSLYD 187
Score = 29.0 bits (65), Expect = 0.16
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 16/62 (25%)
Query: 46 FRKLDLDNSGALSIDEF----------------MSLPELQQNPLVQRVIDIFDEDGNGEV 89
F+ DLDN G ++ +E + E V R+ + D++ +G++
Sbjct: 105 FKLYDLDNDGYITRNEMLDIVDAIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKL 164
Query: 90 DF 91
Sbjct: 165 TL 166
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 46.8 bits (111), Expect = 7e-08
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDGNG 87
D EI++ K F + SG L+ ++F+ P + +FD+D NG
Sbjct: 21 YFDRREIQQWHKGFLRDC--PSGQLAREDFVKIYKQFFPFGSPEDFANHLFTVFDKDNNG 78
Query: 88 EVDFK 92
+ F+
Sbjct: 79 FIHFE 83
Score = 32.1 bits (73), Expect = 0.015
Identities = 8/37 (21%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFD 82
F+ +D + G +++DEF + +P + ++++D
Sbjct: 153 FKLMDKNEDGYITLDEFREG--SKVDPSIIGALNLYD 187
Score = 27.5 bits (61), Expect = 0.59
Identities = 11/67 (16%), Positives = 26/67 (38%), Gaps = 16/67 (23%)
Query: 41 RLGKRFRKLDLDNSGALSIDEF----------------MSLPELQQNPLVQRVIDIFDED 84
+L F DL++ G ++ DE ++ E V+++ + D++
Sbjct: 100 KLSWAFELYDLNHDGYITFDEMLTIVASVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKN 159
Query: 85 GNGEVDF 91
+G +
Sbjct: 160 EDGYITL 166
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 46.3 bits (110), Expect = 8e-08
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDGNGEV 89
E++ L + F+ SG ++ + F + P + + + FD G V
Sbjct: 16 TKRELQVLYRGFKNEX--PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSV 73
Query: 90 DFK 92
F+
Sbjct: 74 KFE 76
Score = 30.6 bits (69), Expect = 0.045
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFD 82
F+K+D + G +++DEF+ Q++ + R + +F
Sbjct: 146 FQKMDKNKDGIVTLDEFLES--XQEDDNIMRSLQLFQ 180
Score = 30.6 bits (69), Expect = 0.047
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 16/62 (25%)
Query: 46 FRKLDLDNSGALSIDEF----------------MSLPELQQNPLVQRVIDIFDEDGNGEV 89
F D++ G ++ +E L E V D++ +G V
Sbjct: 98 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 157
Query: 90 DF 91
Sbjct: 158 TL 159
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 45.4 bits (107), Expect = 3e-07
Identities = 12/63 (19%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDGNGEV 89
E++ L + F+ SG ++ + F + P + + + FD G V
Sbjct: 49 TKRELQVLYRGFKNEC--PSGVVNEETFKQIYAQFFPHGDASTYAHYLFNAFDTTQTGSV 106
Query: 90 DFK 92
F+
Sbjct: 107 KFE 109
Score = 31.1 bits (70), Expect = 0.035
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFD 82
F+K+D + G +++DEF+ Q++ + R + +F
Sbjct: 179 FQKMDKNKDGIVTLDEFLES--CQEDDNIMRSLQLFQ 213
Score = 30.3 bits (68), Expect = 0.060
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 16/62 (25%)
Query: 46 FRKLDLDNSGALSIDEF----------------MSLPELQQNPLVQRVIDIFDEDGNGEV 89
F D++ G ++ +E L E V D++ +G V
Sbjct: 131 FNLYDINKDGYINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIV 190
Query: 90 DF 91
Sbjct: 191 TL 192
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain
and 4 calmodulin...; transferase, calcium dependent
protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum}
PDB: 3hzt_A* 3dxn_A 3l19_A*
Length = 494
Score = 45.5 bits (108), Expect = 3e-07
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 12/70 (17%)
Query: 34 IDADEIRRLGKRFRKLDLDNSGALSIDEFMS------------LPELQQNPLVQRVIDIF 81
+E + L FR +D + G L E + Q V ++
Sbjct: 340 TSQEETKELTDIFRHIDKNGDGQLDRQELIDGYSKLSGEEVAVFDLPQIESEVDAILGAA 399
Query: 82 DEDGNGEVDF 91
D D NG +D+
Sbjct: 400 DFDRNGYIDY 409
Score = 37.4 bits (87), Expect = 2e-04
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNP--LVQRVIDIFDEDGN 86
+ + + +L F+K D D +G +S+DE S+ L + +I D + +
Sbjct: 417 MDRKSLLSK--DKLESAFQKFDQDGNGKISVDELASVFGLDHLESKTWKEMISGIDSNND 474
Query: 87 GEVDFKG 93
G+VDF+
Sbjct: 475 GDVDFEE 481
Score = 33.1 bits (76), Expect = 0.006
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 24 STELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVID 79
E+ + E+ + D D +G + EF M L ++
Sbjct: 377 GEEVAVFDLPQIESEVDAI---LGAADFDRNGYIDYSEFVTVAMDRKSLLSKDKLESAFQ 433
Query: 80 IFDEDGNG 87
FD+DGNG
Sbjct: 434 KFDQDGNG 441
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 2.00A {Beroe abyssicola}
Length = 208
Score = 44.8 bits (106), Expect = 4e-07
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 13/81 (16%)
Query: 24 STELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL---------- 73
+ ++ + + RL KRF DLD+ G + +DE + P+ + +
Sbjct: 20 GNQWQFNVEDLHPKMLSRLYKRFDTFDLDSDGKMEMDEVLYWPDRMRQLVNATDEQVEKM 79
Query: 74 ---VQRVIDIFDEDGNGEVDF 91
V+ + +
Sbjct: 80 RDAVRVFFLHKGVEPVNGLLR 100
Score = 33.6 bits (77), Expect = 0.004
Identities = 9/48 (18%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 46 FRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDEDGNGEVDF 91
+ LD D G + +DE + + + D D +G+++
Sbjct: 134 YDVLDDDGDGTVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLER 181
Score = 28.6 bits (64), Expect = 0.23
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 11/44 (25%)
Query: 33 KIDADEIRRLGKR-----------FRKLDLDNSGALSIDEFMSL 65
+D DE++ + K F K D D SG L E + L
Sbjct: 144 TVDVDELKTMMKAFDVPQEAAYTFFEKADTDKSGKLERTELVHL 187
Score = 28.2 bits (63), Expect = 0.32
Identities = 10/60 (16%), Positives = 19/60 (31%), Gaps = 15/60 (25%)
Query: 46 FRKLDLDNSGALSIDEFMSL---------------PELQQNPLVQRVIDIFDEDGNGEVD 90
F ++ L ++++ L D+ D+DG+G VD
Sbjct: 87 FLHKGVEPVNGLLREDWVEANRVFAEAERERERRGEPSLIALLSNSYYDVLDDDGDGTVD 146
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural
genomics, structural genomic consortium, SGC,
transferase; HET: ANP; 2.10A {Plasmodium berghei}
Length = 504
Score = 45.1 bits (107), Expect = 4e-07
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 12/69 (17%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMS------------LPELQQNPLVQRVIDIFD 82
+E + L F+KLD + G L E + V ++ D
Sbjct: 350 TLEERKELTDIFKKLDKNGDGQLDKKELIEGYNVLRNFKNELGELKNVEEEVDNILKEVD 409
Query: 83 EDGNGEVDF 91
D NG +++
Sbjct: 410 FDKNGYIEY 418
Score = 36.6 bits (85), Expect = 4e-04
Identities = 14/67 (20%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNP--LVQRVIDIFDEDGN 86
+ + ++ RL + F D D SG ++ +E +L L V+ D++ +
Sbjct: 426 MDKQILFSE--ERLRRAFNLFDTDKSGKITKEELANLFGLTSISEKTWNDVLGEADQNKD 483
Query: 87 GEVDFKG 93
+DF
Sbjct: 484 NMIDFDE 490
Score = 33.5 bits (77), Expect = 0.005
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 7/68 (10%)
Query: 24 STELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVID 79
+ + L K +E+ + +++D D +G + EF M L ++R +
Sbjct: 386 NFKNELGELKNVEEEVDNI---LKEVDFDKNGYIEYSEFISVCMDKQILFSEERLRRAFN 442
Query: 80 IFDEDGNG 87
+FD D +G
Sbjct: 443 LFDTDKSG 450
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, EF hand,
bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma
gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A*
3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A*
3v5t_A* 3ku2_A* 3hx4_A*
Length = 484
Score = 45.1 bits (107), Expect = 5e-07
Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 15/78 (19%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS---------------LPELQQNPL 73
+ DE + L F K+D + G L E + L
Sbjct: 324 MGSKLTSQDETKELTAIFHKMDKNGDGQLDRAELIEGYKELMRMKGQDASMLDASAVEHE 383
Query: 74 VQRVIDIFDEDGNGEVDF 91
V +V+D D D NG +++
Sbjct: 384 VDQVLDAVDFDKNGYIEY 401
Score = 37.4 bits (87), Expect = 2e-04
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNP--LVQRVIDIFDEDGN 86
+ + + RL + FR D DNSG +S E ++ + + V+ D++ +
Sbjct: 409 MDRKTLLSR--ERLERAFRMFDSDNSGKISSTELATIFGVSDVDSETWKSVLSEVDKNND 466
Query: 87 GEVDFKG 93
GEVDF
Sbjct: 467 GEVDFDE 473
Score = 33.5 bits (77), Expect = 0.006
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNG 87
E+ ++ +D D +G + EF M L ++R +FD D +G
Sbjct: 382 HEVDQV---LDAVDFDKNGYIEYSEFVTVAMDRKTLLSRERLERAFRMFDSDNSG 433
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria,
structural genomics consortium, SGC, transfe; 2.10A
{Plasmodium falciparum}
Length = 180
Score = 44.2 bits (105), Expect = 5e-07
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL-VQRVIDIFDEDGNGEVDF 91
+ I+ + + F KLD +++G+LS E + L + + R++ D + G + +
Sbjct: 36 NHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQALDINDRGNITY 92
Score = 28.8 bits (65), Expect = 0.18
Identities = 11/68 (16%), Positives = 22/68 (32%), Gaps = 5/68 (7%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL--PELQQNPLVQRVIDIFDEDGN 86
I++ ++ F K+D D G +S + +SL ++ N +
Sbjct: 100 YRWKNIESTFLKAA---FNKIDKDEDGYISKSDIVSLVHDKVLDNNDIDNFFLSVHSIKK 156
Query: 87 GEVDFKGK 94
G
Sbjct: 157 GIPREHII 164
Score = 27.6 bits (62), Expect = 0.44
Identities = 12/58 (20%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL---PELQQNPLVQRVIDIFDEDGNG 87
I +I R+ + LD+++ G ++ EFM+ + ++ ++ + D+D +G
Sbjct: 69 GIKKWDINRI---LQALDINDRGNITYTEFMAGCYRWKNIESTFLKAAFNKIDKDEDG 123
>3sjs_A URE3-BP sequence specific DNA binding protein; EF-hand, structural
genomics, seattle S genomics center for infectious
disease, ssgcid; 1.90A {Entamoeba histolytica} PDB:
3sia_A 3sib_A
Length = 220
Score = 43.2 bits (102), Expect = 1e-06
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Query: 34 IDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP---LVQRVIDIFDEDGNGEV 89
I D+ R+ + F +D D SG L I+E M R++ IFD D NG +
Sbjct: 45 IPLDQYTRIYQWFMGVDRDRSGTLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHI 104
Query: 90 DFK 92
F
Sbjct: 105 SFY 107
Score = 33.6 bits (77), Expect = 0.004
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 15/72 (20%)
Query: 33 KIDADEIR----RLGKRF---------RKLDLDNSGALSIDEFMSLPELQQNPLVQRVID 79
++ +E+ G R R D D +G +S EFM++ + + +
Sbjct: 67 TLEINELMMGQFPGGIRLSPQTALRMMRIFDTDFNGHISFYEFMAMYKFMEL--AYNLFV 124
Query: 80 IFDEDGNGEVDF 91
+ +G ++
Sbjct: 125 MNARARSGTLEP 136
Score = 32.1 bits (73), Expect = 0.015
Identities = 10/57 (17%), Positives = 15/57 (26%), Gaps = 3/57 (5%)
Query: 38 EIRRLGKRFRKLDLDNSGALSIDEF-MSLPEL--QQNPLVQRVIDIFDEDGNGEVDF 91
+ F SG L E +L +L N ++ G D
Sbjct: 115 FMELAYNLFVMNARARSGTLEPHEILPALQQLGFYINQRTSLLLHRLFARGMAFCDL 171
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 87
Score = 41.4 bits (98), Expect = 2e-06
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDF 91
+EI L + F+ +D DNSG ++ DE L + + ++ ++D D D +G +D+
Sbjct: 20 EEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDY 78
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free
energy, dynamic behaviour, cytoskeleton, metal binding;
2.50A {Entamoeba histolytica}
Length = 66
Score = 40.6 bits (96), Expect = 2e-06
Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDGNGEVDFK 92
F+++D++ GA+S +E + ++ +Q + D DGNGE+D
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQN 56
Score = 26.4 bits (59), Expect = 0.58
Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL 65
+ ++ + F+ +D D +G + +EF
Sbjct: 32 IKNEQLLQLI---FKSIDADGNGEIDQNEFAKF 61
Score = 24.4 bits (54), Expect = 3.4
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 73 LVQRVIDIFDEDGNGEVDFK 92
+ + + D +G+G V ++
Sbjct: 1 MAEALFKEIDVNGDGAVSYE 20
>2hps_A Coelenterazine-binding protein with bound coelent;
bioluminescence, southeast collabora structural
genomics, secsg, structural genomics, PSI; HET: CTZ;
1.72A {Renilla muelleri} PDB: 2hq8_A
Length = 186
Score = 42.4 bits (100), Expect = 2e-06
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 36 ADEIRRLGKRFRKLDLDNSGALSIDEFMSLPEL-------------QQNPLVQRVIDIFD 82
A +R++ R +++D+ G +S +++ + + RV D
Sbjct: 10 AYHLRKMKTRMQRVDVTGDGFISREDYELIAVRIAKIAKLSAEKAEETRQEFLRVADQLG 69
Query: 83 EDGNGEVDF 91
+
Sbjct: 70 LAPGVRISV 78
Score = 35.5 bits (82), Expect = 0.001
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 24 STELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVID 79
+ L + A + + + +D D G +S+ EF ++ + +
Sbjct: 86 TDSLLKMKGEEKAMAVIQSLIMYDCIDTDKDGYVSLPEFKAFLQAVGPDLTDDKAITCFN 145
Query: 80 IFDEDGNGEVDF 91
D + NG++
Sbjct: 146 TLDFNKNGQISR 157
Score = 28.9 bits (65), Expect = 0.18
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 12/76 (15%)
Query: 29 LSLNKIDADEIRR-LGKRFRKLDLDNSGALSIDEFMSL-----------PELQQNPLVQR 76
L+ A+E R+ + +L L +S++E +
Sbjct: 47 AKLSAEKAEETRQEFLRVADQLGLAPGVRISVEEAAVNATDSLLKMKGEEKAMAVIQSLI 106
Query: 77 VIDIFDEDGNGEVDFK 92
+ D D D +G V
Sbjct: 107 MYDCIDTDKDGYVSLP 122
Score = 27.8 bits (62), Expect = 0.51
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 13/46 (28%)
Query: 33 KIDADEIRRLGKR-------------FRKLDLDNSGALSIDEFMSL 65
+ E + + F LD + +G +S DEF+
Sbjct: 118 YVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVT 163
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural
genomics, structural genomics CONS SGC; 2.00A
{Plasmodium falciparum K1}
Length = 197
Score = 42.6 bits (101), Expect = 2e-06
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDF 91
EI L F LD+DNSG LS E + L ++ + + +V+ D + +G++ +
Sbjct: 54 VEINNLRNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDIHQVLRDIDSNASGQIHY 112
Score = 36.0 bits (84), Expect = 5e-04
Identities = 14/71 (19%), Positives = 34/71 (47%), Gaps = 6/71 (8%)
Query: 27 LNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF---MSLPELQQNPL---VQRVIDI 80
L +++K + F+ D+D +G +S++E +++ + + ++
Sbjct: 116 LAATIDKQTYLKKEVCLIPFKFFDIDGNGKISVEELKRIFGRDDIENPLIDKAIDSLLQE 175
Query: 81 FDEDGNGEVDF 91
D +G+GE+DF
Sbjct: 176 VDLNGDGEIDF 186
Score = 25.2 bits (56), Expect = 3.8
Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 7/55 (12%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNG 87
+I ++ R +D + SG + +F + + + FD DGNG
Sbjct: 93 PDIHQV---LRDIDSNASGQIHYTDFLAATIDKQTYLKKEVCLIPFKFFDIDGNG 144
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein
kinase, transferase, calcium-bindin binding, bumped
kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium
parvum} PDB: 3igo_A* 3ncg_A*
Length = 486
Score = 42.7 bits (101), Expect = 3e-06
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 18/81 (22%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF------------------MSLPELQQ 70
++ DE ++L + FRKLD +N G L DE +
Sbjct: 320 MASKLTTLDETKQLTEIFRKLDTNNDGMLDRDELVRGYHEFMRLKGVDSNSLIQNEGSTI 379
Query: 71 NPLVQRVIDIFDEDGNGEVDF 91
+ ++ + D DG+G +++
Sbjct: 380 EDQIDSLMPLLDMDGSGSIEY 400
Score = 35.8 bits (83), Expect = 7e-04
Identities = 16/69 (23%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDED 84
+ + + R+ + F+ D D SG +S E L + + ++ +I+ D +
Sbjct: 408 IDRTILLSR--ERMERAFKMFDKDGSGKISTKELFKLFSQADSSIQMEELESIIEQVDNN 465
Query: 85 GNGEVDFKG 93
+GEVDF
Sbjct: 466 KDGEVDFNE 474
Score = 34.3 bits (79), Expect = 0.003
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNG 87
D+I L LD+D SG++ EF + L ++R +FD+DG+G
Sbjct: 381 DQIDSL---MPLLDMDGSGSIEYSEFIASAIDRTILLSRERMERAFKMFDKDGSG 432
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform
A; EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 40.9 bits (96), Expect = 4e-06
Identities = 10/66 (15%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 31 LNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL----VQRVIDIFDEDGN 86
L+K + + F D + +S +EF ++ + L R+ + +
Sbjct: 15 LHKAVTSHYHAITQEFENFDTMKTNTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAK 74
Query: 87 GEVDFK 92
G + +
Sbjct: 75 GRLKYP 80
Score = 24.7 bits (54), Expect = 4.3
Identities = 6/32 (18%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS 64
+ ++ RL + ++ ++ G L +F+S
Sbjct: 56 ILTDEQFDRL---WNEMPVNAKGRLKYPDFLS 84
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 42.3 bits (99), Expect = 4e-06
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 7/65 (10%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-----LPELQQNPLVQRVIDIFDEDGNG 87
K E++ L + F+ +G + D F P+ + + FD DGNG
Sbjct: 87 KFTKKELQSLYRGFKNEC--PTGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNG 144
Query: 88 EVDFK 92
+ F+
Sbjct: 145 AIHFE 149
Score = 31.2 bits (70), Expect = 0.032
Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFD 82
F+K+D + G ++IDEF+ Q++ + + +F+
Sbjct: 219 FQKMDRNQDGVVTIDEFLET--CQKDENIMNSMQLFE 253
Score = 30.4 bits (68), Expect = 0.052
Identities = 12/67 (17%), Positives = 21/67 (31%), Gaps = 16/67 (23%)
Query: 41 RLGKRFRKLDLDNSGALSIDEF----------------MSLPELQQNPLVQRVIDIFDED 84
+L F D++ G ++ +E L E V+R D +
Sbjct: 166 KLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRN 225
Query: 85 GNGEVDF 91
+G V
Sbjct: 226 QDGVVTI 232
>3k21_A PFCDPK3, calcium-dependent protein kinase 3; calcium kinase
structural genomics malaria, structural genom
consortium, SGC, ATP-binding; 1.15A {Plasmodium
falciparum} PDB: 3o4y_A
Length = 191
Score = 41.9 bits (99), Expect = 4e-06
Identities = 13/63 (20%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL--VQRVIDIFDEDGNGE 88
+ + ++ +L F LD D G ++ ++ L + ++D D DG+G+
Sbjct: 44 QQSNDYDVEKLKSTFLVLDEDGKGYITKEQLKKGLEKDGLKLPYNFDLLLDQIDSDGSGK 103
Query: 89 VDF 91
+D+
Sbjct: 104 IDY 106
Score = 31.5 bits (72), Expect = 0.025
Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 12/72 (16%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL---------PELQQNPLVQRVID 79
L ++ I FR D+DN G ++ E + + V+R+I
Sbjct: 114 LDRKQLSKKLIYCA---FRVFDVDNDGEITTAELAHILYNGNKKGNITQRDVNRVKRMIR 170
Query: 80 IFDEDGNGEVDF 91
D++ +G++DF
Sbjct: 171 DVDKNNDGKIDF 182
Score = 25.7 bits (57), Expect = 2.0
Identities = 14/55 (25%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVI----DIFDEDGNG 87
L ++D D SG + EF++ L + L +++I +FD D +G
Sbjct: 87 YNFDLL---LDQIDSDGSGKIDYTEFIAA-ALDRKQLSKKLIYCAFRVFDVDNDG 137
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix,
structural genomics, protein structure initiative; NMR
{Arabidopsis thaliana} SCOP: a.39.1.5
Length = 67
Score = 39.0 bits (92), Expect = 7e-06
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 7/59 (11%)
Query: 38 EIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDFK 92
+R+ F K D + G LS+DEF + + + D DGNGE++
Sbjct: 2 SAKRV---FEKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNAD 57
Score = 25.9 bits (58), Expect = 0.89
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 13/46 (28%)
Query: 33 KIDADEIRR----LGKR---------FRKLDLDNSGALSIDEFMSL 65
K+ DE R F ++D+D +G L+ DEF S
Sbjct: 17 KLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSC 62
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1;
calmodulin-like domain, EF calcium binding protein,
transferase; 2.00A {Arabidopsis thaliana}
Length = 166
Score = 40.2 bits (95), Expect = 1e-05
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
+EI L + F +D D SG ++ +E L + N + ++ D D +G +D+
Sbjct: 24 EEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQAADVDNSGTIDY 82
Score = 31.7 bits (73), Expect = 0.014
Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 27 LNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNP-LVQRVIDIFDED 84
+ +L+ + L F D D SG ++ DE + E ++ ++ D+D
Sbjct: 86 IAATLHLNKIEREDHLFAAFTYFDKDGSGYITPDELQQACEEFGVEDVRIEELMRDVDQD 145
Query: 85 GNGEVDF 91
+G +D+
Sbjct: 146 NDGRIDY 152
Score = 26.3 bits (59), Expect = 1.3
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 7/55 (12%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF--MSLPELQQNP--LVQRVIDIFDEDGNG 87
EI L + D+DNSG + EF +L + + FD+DG+G
Sbjct: 63 SEILDL---MQAADVDNSGTIDYKEFIAATLHLNKIEREDHLFAAFTYFDKDGSG 114
>1c7v_A CAVP, calcium vector protein; EF-hand family, calcium binding
protein, metal binding protein; NMR {Branchiostoma
lanceolatum} SCOP: a.39.1.5 PDB: 1c7w_A
Length = 81
Score = 37.9 bits (89), Expect = 3e-05
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL----VQRVIDIFDEDGNGEVDF 91
D+ + + F+ D + G + DEF + ++ + PL V+ + DEDGNG +D
Sbjct: 5 DDEEEILRAFKVFDANGDGVIDFDEFKFIMQKVGEEPLTDAEVEEAMKEADEDGNGVIDI 64
>1ij5_A Plasmodial specific LAV1-2 protein; fourty kDa calcium binding
protein, CBP40, metal binding protein; 3.00A {Physarum
polycephalum} SCOP: a.39.1.9 PDB: 1ij6_A
Length = 323
Score = 39.4 bits (92), Expect = 4e-05
Identities = 10/70 (14%), Positives = 25/70 (35%), Gaps = 4/70 (5%)
Query: 26 ELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIF 81
L S + ++ L + F + SG S + L + ++++ +
Sbjct: 108 RLRPSKPMLSEEDTNILRQLFLSSAVSGSGKFSFQDLKQVLAKYADTIPEGPLKKLFVMV 167
Query: 82 DEDGNGEVDF 91
+ D G + +
Sbjct: 168 ENDTKGRMSY 177
Score = 37.1 bits (86), Expect = 3e-04
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 36 ADEIRRLGKRFRKLDLDNSGALSIDEF---MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
A+++ L FRK+D +++G LS EF + + + DED + +V F
Sbjct: 184 ANDLAALVADFRKIDTNSNGTLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGF 242
Score = 33.2 bits (76), Expect = 0.006
Identities = 9/51 (17%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 46 FRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDGNGEVDF 91
+ D D SG LS +E + + + D D + + +
Sbjct: 259 YAFADFDKSGQLSKEEVQKVLEDAHIPESARKKFEHQFSVVDVDDSKSLSY 309
Score = 29.0 bits (65), Expect = 0.19
Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 14/72 (19%)
Query: 33 KIDADEIRR----LGKR--------FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDI 80
+ E R LG FR D D S + E++ L ++ +
Sbjct: 204 TLSRKEFREHFVRLGFDKKSVQDALFRYADEDESDDVGFSEYVHLGLCLLV--LRILYAF 261
Query: 81 FDEDGNGEVDFK 92
D D +G++ +
Sbjct: 262 ADFDKSGQLSKE 273
Score = 27.1 bits (60), Expect = 0.88
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 5/60 (8%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGEVDFK 92
I +++L F ++ D G +S +++ + D + NG + K
Sbjct: 154 TIPEGPLKKL---FVMVENDTKGRMSYITLVAVANDLAA--LVADFRKIDTNSNGTLSRK 208
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium
binding protein, apoptosis, calcium, endoplasmic
reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB:
2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Length = 172
Score = 39.1 bits (92), Expect = 4e-05
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 8/63 (12%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL----VQRVIDIFDEDGNGEV 89
D + + F+++D D SG +S E L P V+ +I +FD + V
Sbjct: 5 DQSFLWNV---FQRVDKDRSGVISDTELQQALSNGTWTPFNPVTVRSIISMFDRENKAGV 61
Query: 90 DFK 92
+F
Sbjct: 62 NFS 64
Score = 34.1 bits (79), Expect = 0.002
Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 39 IRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
I FR D DNSG + +E + +I FD G G++ F
Sbjct: 73 ITDWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAF 129
Score = 30.3 bits (69), Expect = 0.051
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 5/64 (7%)
Query: 28 NLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNG 87
N + + +R + D +N ++ EF + + + Q V +D D +G
Sbjct: 35 NGTWTPFNPVTVRSI---ISMFDRENKAGVNFSEFTGVWKYITD--WQNVFRTYDRDNSG 89
Query: 88 EVDF 91
+D
Sbjct: 90 MIDK 93
Score = 24.5 bits (54), Expect = 5.1
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 15/72 (20%)
Query: 33 KIDADEIRR----LGKR---------FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVID 79
ID +E+++ G R RK D G ++ D+F+ + Q + +
Sbjct: 90 MIDKNELKQALSGFGYRLSDQFHDILIRKFDRQGRGQIAFDDFIQGCIVLQR--LTDIFR 147
Query: 80 IFDEDGNGEVDF 91
+D D +G +
Sbjct: 148 RYDTDQDGWIQV 159
Score = 23.7 bits (52), Expect = 9.8
Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 39 IRRLGKRFRKLDLDNSGA--LSIDEFMSL 65
++RL FR+ D D G +S ++++S+
Sbjct: 139 LQRLTDIFRRYDTDQDGWIQVSYEQYLSM 167
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal
binding protein; NMR {Neanthes diversicolor} SCOP:
a.39.1.5 PDB: 2scp_A
Length = 174
Score = 38.5 bits (90), Expect = 5e-05
Identities = 11/71 (15%), Positives = 26/71 (36%), Gaps = 15/71 (21%)
Query: 36 ADEIRRLGKRFRKLDLDNSGALSIDEFMSLPE-LQQN-----PLVQRVIDIF-------- 81
++++ F ++D D GA++ +F S+ E + + ++D
Sbjct: 2 DLWVQKMKTYFNRIDFDKDGAITRMDFESMAERFAKESEMKAEHAKVLMDSLTGVWDNFL 61
Query: 82 -DEDGNGEVDF 91
G +D
Sbjct: 62 TAVAGGKGIDE 72
Score = 33.5 bits (77), Expect = 0.003
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 46 FRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDEDGNGEVDF 91
FR +D + +S DE+ L + + D D + +G +
Sbjct: 100 FRAVDTNEDNNISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSL 147
Score = 28.9 bits (65), Expect = 0.17
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 11/44 (25%)
Query: 33 KIDADEIRRLGKR-----------FRKLDLDNSGALSIDEFMSL 65
I DE F +D +N G LS++EF+
Sbjct: 110 NISRDEYGIFFGMLGLDKTMAPASFDAIDTNNDGLLSLEEFVIA 153
Score = 28.9 bits (65), Expect = 0.19
Identities = 4/73 (5%), Positives = 18/73 (24%), Gaps = 15/73 (20%)
Query: 33 KIDADEIRRLGKRFRKL------DLDNSGALSIDEFMSL---------PELQQNPLVQRV 77
++ A+ + L + + + F++ + +
Sbjct: 40 EMKAEHAKVLMDSLTGVWDNFLTAVAGGKGIDETTFINSMKEMVKNPEAKSVVEGPLPLF 99
Query: 78 IDIFDEDGNGEVD 90
D + + +
Sbjct: 100 FRAVDTNEDNNIS 112
>1s6i_A CDPK, calcium-dependent protein kinase SK5; EF-hand,
helix-loop-helix, calcium-binding, calmodulin
superfamily, transferase, plant protein; NMR {Glycine
max} SCOP: a.39.1.5
Length = 188
Score = 38.7 bits (91), Expect = 5e-05
Identities = 17/59 (28%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
+EI L + F+ +D DNSG ++ DE L + + ++ ++D D D +G +D+
Sbjct: 7 EEIGGLKELFKMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDY 65
Score = 31.0 bits (71), Expect = 0.029
Identities = 13/73 (17%), Positives = 29/73 (39%), Gaps = 14/73 (19%)
Query: 27 LNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF--------MSLPELQQNPLVQRVI 78
+ +++ + L F D D SG +++DE + + +I
Sbjct: 69 IAATVHLNKLEREENLVSAFSYFDKDGSGYITLDEIQQACKDFGLDDIHIDD------MI 122
Query: 79 DIFDEDGNGEVDF 91
D+D +G++D+
Sbjct: 123 KEIDQDNDGQIDY 135
Score = 25.6 bits (57), Expect = 2.2
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 23/78 (29%)
Query: 33 KIDADEIRRLGKRF-----------RKLDLDNSGALSIDEFMSL------------PELQ 69
I DEI++ K F +++D DN G + EF ++ ++
Sbjct: 98 YITLDEIQQACKDFGLDDIHIDDMIKEIDQDNDGQIDYGEFAAMMRKRKGNGGIGRRTMR 157
Query: 70 QNPLVQRVIDIFDEDGNG 87
+ ++ + + D N
Sbjct: 158 KTLNLRDALGLVDNGSNQ 175
Score = 24.9 bits (55), Expect = 4.5
Identities = 18/72 (25%), Positives = 31/72 (43%), Gaps = 17/72 (23%)
Query: 33 KIDADEI----RRLGKRFRK---------LDLDNSGALSIDEF----MSLPELQQNPLVQ 75
I DE+ +R+G + D+D SG + EF + L +L++ +
Sbjct: 26 TITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTIDYGEFIAATVHLNKLEREENLV 85
Query: 76 RVIDIFDEDGNG 87
FD+DG+G
Sbjct: 86 SAFSYFDKDGSG 97
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated,
SEN membrane targeting, EF-hand, cell projection,
cilium; 2.00A {Trypanosoma cruzi}
Length = 219
Score = 39.1 bits (91), Expect = 5e-05
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 7/71 (9%)
Query: 26 ELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL----VQRVIDI 80
E L L I L F ++D + + +EF +P+L+ +
Sbjct: 118 EFRLMLCYIYDFF--ELTVMFDEIDASGNMLVDEEEFKRAVPKLEAWGAKVEDPAALFKE 175
Query: 81 FDEDGNGEVDF 91
D++G G V F
Sbjct: 176 LDKNGTGSVTF 186
Score = 33.3 bits (76), Expect = 0.005
Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 14/70 (20%)
Query: 36 ADEIRRLGKRFRKLDLDNSGALSIDEFMS--LPELQQNPLVQRVIDIF------------ 81
A+ +R + F+K D + +G L DE S L L+ + RV DI
Sbjct: 44 AEAKQRRIELFKKFDKNETGKLCYDEVYSGCLEVLKLDEFTSRVRDITKRAFDKSRTLGS 103
Query: 82 DEDGNGEVDF 91
+ G DF
Sbjct: 104 KLENKGSEDF 113
Score = 27.6 bits (61), Expect = 0.65
Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 4/45 (8%)
Query: 50 DLDNSGALSIDEFMSLPELQQNPLVQRVI----DIFDEDGNGEVD 90
L+N G+ EF+ + + D D GN VD
Sbjct: 104 KLENKGSEDFVEFLEFRLMLCYIYDFFELTVMFDEIDASGNMLVD 148
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent
kinase, structural genomics, structural GE consortium,
SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Length = 191
Score = 38.0 bits (89), Expect = 9e-05
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 15/70 (21%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMS------------LPELQQNPL---VQRVIDIF 81
+E + L + FR+LD + G L E + + +L + + V ++
Sbjct: 37 EETKELTQIFRQLDNNGDGQLDRKELIEGYRKLMQWKGDTVSDLDSSQIEAEVDHILQSV 96
Query: 82 DEDGNGEVDF 91
D D NG +++
Sbjct: 97 DFDRNGYIEY 106
Score = 35.3 bits (82), Expect = 8e-04
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 27 LNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL--PELQQNPLVQRVIDIFDED 84
+ + ++K RL F++ D D SG ++ +E L + +V+ D++
Sbjct: 110 VTVCMDKQLLLSRERLLAAFQQFDSDGSGKITNEELGRLFGVTEVDDETWHQVLQECDKN 169
Query: 85 GNGEVDF 91
+GEVDF
Sbjct: 170 NDGEVDF 176
Score = 26.9 bits (60), Expect = 1.0
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNG 87
E+ + + +D D +G + EF M L + FD DG+G
Sbjct: 87 AEVDHI---LQSVDFDRNGYIEYSEFVTVCMDKQLLLSRERLLAAFQQFDSDGSG 138
>1jfj_A Ehcabp, calcium-binding protein; EF-hand, helix-loop-helix, metal
binding protein; NMR {Entamoeba histolytica} SCOP:
a.39.1.5 PDB: 1jfk_A 2nxq_A 3px1_A 3qjk_A 2jnx_A 2i18_A
Length = 134
Score = 37.5 bits (88), Expect = 1e-04
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 46 FRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDF 91
F+++D++ GA+S +E + + + + +Q + D DGNGE+D
Sbjct: 6 FKEIDVNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQ 55
Score = 30.6 bits (70), Expect = 0.031
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
+D+ L ++ +D+D G L+ +E S + V + D +G+G +
Sbjct: 70 LSDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQVMKADANGDGYITL 126
Score = 26.3 bits (59), Expect = 1.1
Identities = 10/58 (17%), Positives = 23/58 (39%), Gaps = 10/58 (17%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-------MSLPELQQNPLVQRVIDIFDEDGNG 87
++ + F+ +D D +G + +EF ++ + + D DG+G
Sbjct: 36 QLLQLI---FKSIDADGNGEIDQNEFAKFYGSIQGQDLSDDKIGLKVLYKLMDVDGDG 90
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand,
cross-reactivity; 1.75A {Phleum pratense} SCOP:
a.39.1.10
Length = 78
Score = 36.4 bits (85), Expect = 1e-04
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 6/59 (10%)
Query: 36 ADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL--VQRVIDIFDEDGNGEVDF 91
AD++ R+ F++ D + G +S+ E L L VQR++ D DG+G +DF
Sbjct: 2 ADDMERI---FKRFDTNGDGKISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDF 57
Score = 25.6 bits (57), Expect = 1.5
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL 65
+L ADE++R+ ++D D G + +EF+S
Sbjct: 31 TLGSTSADEVQRM---MAEIDTDGDGFIDFNEFISF 63
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer,
domain-swapping, EF-hand; 1.75A {Chenopodium album}
SCOP: a.39.1.10 PDB: 1h4b_A
Length = 86
Score = 36.5 bits (85), Expect = 1e-04
Identities = 13/62 (20%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPL---VQRVIDIFDEDGNGEV 89
+ +I + F++ D + G +S E + + V+R++ D DG+G +
Sbjct: 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFI 63
Query: 90 DF 91
F
Sbjct: 64 SF 65
Score = 25.3 bits (56), Expect = 1.9
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL 65
+L + DE+RR+ ++D D G +S DEF
Sbjct: 39 TLGSVTPDEVRRM---MAEIDTDGDGFISFDEFTDF 71
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus}
SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Length = 108
Score = 36.5 bits (85), Expect = 2e-04
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 7/63 (11%)
Query: 36 ADEIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPL----VQRVIDIFDEDGNGE 88
++ FR +D D SG L DE F+ + L + ++D D DG+G+
Sbjct: 37 KMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGK 96
Query: 89 VDF 91
+
Sbjct: 97 IGA 99
Score = 23.8 bits (52), Expect = 8.2
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 16/48 (33%)
Query: 34 IDADEIR----RLGKRFRKL------------DLDNSGALSIDEFMSL 65
+D DE++ + R+L D D G + DEF +
Sbjct: 58 LDGDELKYFLQKFQSDARELTESETKSLMDAADNDGDGKIGADEFQEM 105
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR
{Saccharopolyspora erythraea} SCOP: a.39.1.5
Length = 176
Score = 37.0 bits (86), Expect = 2e-04
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 19/75 (25%)
Query: 36 ADEIRRLGKRFRKLDLDNSGALSIDEFMSL--------------PELQQ-----NPLVQR 76
A RL KRF + D D +GAL +F E+Q L
Sbjct: 3 AIASDRLKKRFDRWDFDGNGALERADFEKEAQHIAEAFGKDAGAAEVQTLKNAFGGLFDY 62
Query: 77 VIDIFDEDGNGEVDF 91
+ +G +
Sbjct: 63 LAKEAGVGSDGSLTE 77
Score = 32.8 bits (75), Expect = 0.007
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 46 FRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDEDGNGEVDF 91
D + G ++ DEF + L L + + D +GNGE+
Sbjct: 108 VGMCDKNADGQINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSL 155
Score = 31.3 bits (71), Expect = 0.026
Identities = 7/59 (11%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 46 FRKLDLDNSGALSIDEFMSL------------PELQQNPLVQRVIDIFDEDGNGEVDFK 92
++ + + G+L+ ++F+ + P+V+ ++ + D++ +G+++
Sbjct: 64 AKEAGVGSDGSLTEEQFIRVTENLIFEQGEASFNRVLGPVVKGIVGMCDKNADGQINAD 122
Score = 29.0 bits (65), Expect = 0.16
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 33 KIDADEIRRLGKR-----------FRKLDLDNSGALSIDEFMSL 65
+I+ADE F ++D + +G LS+DE ++
Sbjct: 118 QINADEFAAWLTALGMSKAEAAEAFNQVDTNGNGELSLDELLTA 161
>1wy9_A Allograft inflammatory factor 1; EF-hand, calucium binding, metal
binding protein; 2.10A {Mus musculus} PDB: 2g2b_A
Length = 147
Score = 36.4 bits (84), Expect = 3e-04
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDF 91
++ ++ + DL+ +G + I L +L ++R+I +
Sbjct: 45 SKLEAFKVKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKRLIREVSSGSEETFSY 103
>2d58_A Allograft inflammatory factor 1; EF-hand, metal binding protein;
1.90A {Homo sapiens}
Length = 107
Score = 35.8 bits (83), Expect = 3e-04
Identities = 7/59 (11%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
++ +++ + DL+ +G + I L +L ++++I +
Sbjct: 29 SKLEGFKEKYMEFDLNGNGDIDIMSLKRMLEKLGVPKTHLELKKLIGEVSSGSGETFSY 87
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand
calcium-binding protein; 1.75A {Gallus gallus} SCOP:
a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A
1npq_A 1trf_A
Length = 90
Score = 35.3 bits (82), Expect = 4e-04
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDF 91
+ I F D D G +S E + + L QNP + +I+ DEDG+G +DF
Sbjct: 17 EMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 75
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP,
structural genomics, PSI; 1.95A {Leishmania major}
SCOP: a.39.1.8
Length = 191
Score = 36.1 bits (84), Expect = 5e-04
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 7/62 (11%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP---LVQRVIDIFDEDGNGEVD 90
D E+ FR +D D SGA+S+ E + L ++++ ++D++ +GE+
Sbjct: 25 DNQELMEW---FRAVDTDGSGAISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEIT 81
Query: 91 FK 92
F
Sbjct: 82 FD 83
Score = 35.4 bits (82), Expect = 0.001
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 46 FRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
FRK D G L +E +S Q ++ FD G + F
Sbjct: 99 FRKRDSSGDGRLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGF 148
Score = 34.6 bits (80), Expect = 0.002
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 15/73 (20%)
Query: 33 KIDADE----IRRLGKRFRK---------LDLDNSGALSIDEFMSLPELQQNPLVQRVID 79
I E + G F D ++SG ++ DEF L + ++
Sbjct: 43 AISVPELNAALSSAGVPFSLATTEKLLHMYDKNHSGEITFDEFKDLHHFILS--MREGFR 100
Query: 80 IFDEDGNGEVDFK 92
D G+G +D
Sbjct: 101 KRDSSGDGRLDSN 113
Score = 29.2 bits (66), Expect = 0.16
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 15/72 (20%)
Query: 33 KIDADEIRR----LGKR---------FRKLDLDNSGALSIDEFMSLPELQQNPLVQRVID 79
++D++E+R G + RK D G+L D+++ L V+ V
Sbjct: 109 RLDSNEVRAALLSSGYQVSEQTFQALMRKFDRQRRGSLGFDDYVELSIFVCR--VRNVFA 166
Query: 80 IFDEDGNGEVDF 91
+D + G+V F
Sbjct: 167 FYDRERTGQVTF 178
>2jjz_A Ionized calcium-binding adapter molecule 2; EF-hand, actin
crosslinking, ionized calciu binding adapter molecule 2,
metal-binding protein; 2.15A {Homo sapiens} PDB: 2jjz_B
2vtg_A
Length = 150
Score = 35.6 bits (82), Expect = 7e-04
Identities = 6/59 (10%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
+++ +++ + DL+N G + + + +L ++++I + + +
Sbjct: 47 EKLTAFKEKYMEFDLNNEGEIDLMSLKRMMEKLGVPKTHLEMKKMISEVTGGVSDTISY 105
Score = 26.0 bits (57), Expect = 1.7
Identities = 6/42 (14%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 47 RKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGE 88
++ S +S +F+++ +++ V +++ +F+ N
Sbjct: 93 SEVTGGVSDTISYRDFVNMMLGKRSA-VLKLVMMFEGKANES 133
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent
protein; HET: CZN; 1.60A {Aequorea victoria} SCOP:
a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Length = 191
Score = 35.6 bits (82), Expect = 7e-04
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 14/70 (20%)
Query: 36 ADEIRRLGKRFRKLDLDNSGALSIDEFMS------LPELQQNPL---VQRVIDIFDEDGN 86
I R F LD++++G +S+DE + + L P + G
Sbjct: 12 PRWIGRHKHMFNFLDVNHNGKISLDEMVYKASDIVINNLGATPEQAKRHKDAVEAFFGGA 71
Query: 87 G-----EVDF 91
G E D+
Sbjct: 72 GMKYGVETDW 81
Score = 33.2 bits (76), Expect = 0.006
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 4/70 (5%)
Query: 26 ELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIF 81
EL F +D D +GA+++DE+ + +Q + + +
Sbjct: 95 ELEKYAKNEPTLIRIWGDALFDIVDKDQNGAITLDEWKAYTKAAGIIQSSEDCEETFRVC 154
Query: 82 DEDGNGEVDF 91
D D +G++D
Sbjct: 155 DIDESGQLDV 164
Score = 27.1 bits (60), Expect = 0.70
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 25 TELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL 65
+ + D +E FR D+D SG L +DE
Sbjct: 136 KAAGIIQSSEDCEET------FRVCDIDESGQLDVDEMTRQ 170
>3fwb_A Cell division control protein 31; gene gating, complex, cell
cycle, cell division, mitosis, MR transport, nuclear
pore complex, nucleus, phosphoprotein; 2.50A
{Saccharomyces cerevisiae} PDB: 2gv5_A 2doq_A 3fwc_A
Length = 161
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 19 SSIKPSTELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---V 74
S + S + +++ ++ + + + F D++N G L E +++ L +
Sbjct: 2 SKNRSSLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREI 61
Query: 75 QRVIDIFDEDGNGEVDF 91
+ID +D +G + +
Sbjct: 62 LDLIDEYDSEGRHLMKY 78
Score = 29.1 bits (66), Expect = 0.13
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
DEI+R F+ D D++G +SI L E + ++ +I+ FD DG+GE++
Sbjct: 96 DEIKRA---FQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIEEFDLDGDGEINE 151
Score = 26.4 bits (59), Expect = 1.3
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 18/78 (23%)
Query: 33 KIDADE----IRRLGKRFRK---------LDLDNSGALSIDEFMSLPELQQNPL-----V 74
+D E ++ LG K D + + D+F + + +
Sbjct: 39 FLDYHELKVAMKALGFELPKREILDLIDEYDSEGRHLMKYDDFYIVMGEKILKRDPLDEI 98
Query: 75 QRVIDIFDEDGNGEVDFK 92
+R +FD+D G++ K
Sbjct: 99 KRAFQLFDDDHTGKISIK 116
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein;
1.50A {Streptomyces coelicolor} PDB: 3aka_A
Length = 166
Score = 35.1 bits (81), Expect = 0.001
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 19/74 (25%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMSL--------------PELQQ-----NPLVQRV 77
+ RR+ RF D D +G + +F Q L Q +
Sbjct: 1 EYERRIAARFTTFDQDGNGHIDRSDFSGAAKAMLAEFGVAARSDRGQALYGGAEALWQGL 60
Query: 78 IDIFDEDGNGEVDF 91
I D DG+ +
Sbjct: 61 AGIADRDGDQRITR 74
Score = 32.0 bits (73), Expect = 0.011
Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 46 FRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDEDGNGEVDF 91
D D GA+++ + L L ++ D DG+G+V
Sbjct: 104 LGVADTDGDGAVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVGE 151
Score = 30.9 bits (70), Expect = 0.029
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 11/58 (18%)
Query: 46 FRKLDLDNSGALSIDEFMSL-----------PELQQNPLVQRVIDIFDEDGNGEVDFK 92
D D ++ +EF++ P + + + D DG+G V
Sbjct: 61 AGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAALGVADTDGDGAVTVA 118
Score = 28.9 bits (65), Expect = 0.16
Identities = 6/44 (13%), Positives = 10/44 (22%), Gaps = 11/44 (25%)
Query: 33 KIDADEIRRLGKR-----------FRKLDLDNSGALSIDEFMSL 65
+ + R LD D G + E +
Sbjct: 114 AVTVADTARALTAFGVPEDLARQAAAALDTDGDGKVGETEIVPA 157
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT
calmodulin chimera; calcium sensor, fluorescent protein;
HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A*
3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A*
3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Length = 450
Score = 35.3 bits (81), Expect = 0.001
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
++I + F D D G ++ E + L QNP +Q +I+ D DGNG +DF
Sbjct: 309 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 367
Score = 31.0 bits (70), Expect = 0.043
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
+EIR FR D D +G +S E +L E + V +I D DG+G+V++
Sbjct: 385 EEIREA---FRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 440
Score = 26.4 bits (58), Expect = 1.8
Identities = 17/78 (21%), Positives = 30/78 (38%), Gaps = 18/78 (23%)
Query: 33 KIDADEI----RRLGKRFRK---------LDLDNSGALSIDEF---MSLPELQQNPL--V 74
I E+ R LG+ + +D D +G + EF M+ + +
Sbjct: 328 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI 387
Query: 75 QRVIDIFDEDGNGEVDFK 92
+ +FD+DGNG +
Sbjct: 388 REAFRVFDKDGNGYISAA 405
>2kyc_A Parvalbumin-3, parvalbumin, thymic CPV3; EF-hand protein, calcium
binding protein; NMR {Gallus gallus} PDB: 2kyf_A
Length = 108
Score = 34.2 bits (79), Expect = 0.001
Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 7/70 (10%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPL----VQRVIDIF 81
++ + +L + FR LD D SG + DE F+ E L + +
Sbjct: 30 FQISGMSKKSSSQLKEIFRILDNDQSGFIEEDELKYFLQRFESGARVLTASETKTFLAAA 89
Query: 82 DEDGNGEVDF 91
D DG+G++
Sbjct: 90 DHDGDGKIGA 99
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding
protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP:
a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A
1rjv_A 1rk9_A 1g33_A
Length = 109
Score = 33.8 bits (78), Expect = 0.002
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDE-------FMSLPELQQNPLVQRVIDIF 81
+ + + K F LD D SG + DE F S + ++
Sbjct: 30 FQMVGLKKKSADDVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETKTLMAAG 89
Query: 82 DEDGNGEVDF 91
D+DG+G++
Sbjct: 90 DKDGDGKIGV 99
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR
{Rattus norvegicus} PDB: 2g9b_A
Length = 263
Score = 34.5 bits (79), Expect = 0.002
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 13/71 (18%)
Query: 31 LNKIDADEIRRLGKRFRKLDLDNSGALSIDEF----------MSLPELQQNPLVQRVIDI 80
+ I A + + + D D SG L E L+ +P ++ +D
Sbjct: 10 SSLITASQFFEI---WLHFDADGSGYLEGKELQNLIQELLQARKKAGLELSPEMKTFVDQ 66
Query: 81 FDEDGNGEVDF 91
+ + +G++
Sbjct: 67 YGQRDDGKIGI 77
Score = 33.7 bits (77), Expect = 0.004
Identities = 11/69 (15%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEF------------MSLPELQQNPLVQRVIDIFD 82
K +RK D D+SG + +E ++ + + ++ +FD
Sbjct: 98 QLKSCEEFMKTWRKYDTDHSGFIETEELKNFLKDLLEKANKTVDDTKLAEYTDLMLKLFD 157
Query: 83 EDGNGEVDF 91
+ +G+++
Sbjct: 158 SNNDGKLEL 166
Score = 28.3 bits (63), Expect = 0.31
Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 9/79 (11%)
Query: 23 PSTELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL---------PELQQNPL 73
P E L + + K F D D +G + +E +L EL N +
Sbjct: 174 PVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDENELDALLKDLCEKNKQELDINNI 233
Query: 74 VQRVIDIFDEDGNGEVDFK 92
+I G++
Sbjct: 234 STYKKNIMALSDGGKLYRT 252
Score = 27.5 bits (61), Expect = 0.62
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 26 ELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVID------ 79
EL + K + + + + G + I E + ++N L+
Sbjct: 44 ELLQARKKAGLELSPEMKTFVDQYGQRDDGKIGIVELAHVLPTEENFLLLFRCQQLKSCE 103
Query: 80 -------IFDEDGNGEVDFK 92
+D D +G ++ +
Sbjct: 104 EFMKTWRKYDTDHSGFIETE 123
Score = 25.6 bits (56), Expect = 2.6
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 12/59 (20%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQ------------RVIDIFDEDGNGEVDFK 92
+ D +N G L + E L +Q+N L++ + +++D+DGNG +D
Sbjct: 153 LKLFDSNNDGKLELTEMARLLPVQENFLLKFQGIKMCGKEFNKAFELYDQDGNGYIDEN 211
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus}
SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C
1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A
1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Length = 162
Score = 33.7 bits (78), Expect = 0.003
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
+ I F D D G +S E + L QNP + +I+ DEDG+G +DF
Sbjct: 17 EMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDF 75
Score = 29.1 bits (66), Expect = 0.15
Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
+E+ FR D + G + I+E + E ++ ++ D++ +G +DF
Sbjct: 96 EELA---NCFRIFDKNADGFIDIEELGEILRATGEHVTEEDIEDLMKDSDKNNDGRIDF 151
Score = 27.2 bits (61), Expect = 0.66
Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 21/81 (25%)
Query: 33 KIDADEI----RRLGKRFRK---------LDLDNSGALSIDEFMSL--PELQQNPLVQRV 77
I E+ R LG+ K +D D SG + +EF+ + +++++ +
Sbjct: 36 DISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQMKEDAKGKSE 95
Query: 78 IDI------FDEDGNGEVDFK 92
++ FD++ +G +D +
Sbjct: 96 EELANCFRIFDKNADGFIDIE 116
>2joj_A Centrin protein; N-terminal domain, centrin solution structure,
EF-hand calcium binding protein, cell cycle; NMR
{Euplotes octocarinatus}
Length = 77
Score = 32.5 bits (75), Expect = 0.003
Identities = 10/59 (16%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
++ + + + F D + +G++ E +++ L + + +++ +D +GNG + F
Sbjct: 4 EQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGF 62
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo
sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Length = 153
Score = 33.7 bits (78), Expect = 0.003
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
+EI L + FR+ D D G ++ + + + P + + + + G VDF
Sbjct: 8 EEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDF 66
Score = 28.3 bits (64), Expect = 0.27
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL----VQRVIDIFDEDGNGEV 89
D ++ L FR+ D + G +S E ++ L + + ++ +I D +G+G V
Sbjct: 83 DMIGVKELRDAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRV 142
Query: 90 DF 91
DF
Sbjct: 143 DF 144
Score = 26.3 bits (59), Expect = 1.2
Identities = 12/82 (14%), Positives = 31/82 (37%), Gaps = 22/82 (26%)
Query: 33 KIDADE----IRRLGKRFRK---------LDLDNSGALSIDEFMSL---------PELQQ 70
I+ + +R +G + ++++ G + D+F+ L ++
Sbjct: 27 YINCRDLGNCMRTMGYMPTEMELIELSQQINMNLGGHVDFDDFVELMGPKLLAETADMIG 86
Query: 71 NPLVQRVIDIFDEDGNGEVDFK 92
++ FD +G+GE+
Sbjct: 87 VKELRDAFREFDTNGDGEISTS 108
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand,
helix-loop- helix, nervous system, metal binding
protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Length = 83
Score = 32.6 bits (75), Expect = 0.003
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 10/56 (17%)
Query: 46 FRKLDLDNSGALSIDEF----------MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
F+KLD + G ++ E +L + + ++I + D++ +G++
Sbjct: 13 FKKLDANGDGYVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISK 68
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca
binding, EF-hand, luminescent protein; HET: CZH; 1.10A
{Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A*
1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Length = 195
Score = 33.6 bits (77), Expect = 0.004
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 14/69 (20%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMS------LPELQQNPL---VQRVIDIFDEDGNG 87
I+R F LD++ +G +++DE +S +L+ P +V G G
Sbjct: 17 RWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATPEQTKRHQVCVEAFFRGCG 76
Query: 88 -----EVDF 91
E+ F
Sbjct: 77 MEYGKEIAF 85
Score = 32.0 bits (73), Expect = 0.016
Identities = 15/75 (20%), Positives = 26/75 (34%), Gaps = 5/75 (6%)
Query: 22 KPSTELNLSLNKIDADEIRRLGKR-FRKLDLDNSGALSIDEF----MSLPELQQNPLVQR 76
+ +T + + IR G F D D SG +++DE+ +
Sbjct: 94 QLATSELKKWARNEPTLIREWGDAVFDIFDKDGSGTITLDEWKAYGKISGISPSQEDCEA 153
Query: 77 VIDIFDEDGNGEVDF 91
D D G++D
Sbjct: 154 TFRHCDLDNAGDLDV 168
Score = 23.9 bits (52), Expect = 9.5
Identities = 12/41 (29%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 25 TELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL 65
+S ++ D + FR DLDN+G L +DE
Sbjct: 140 KISGISPSQEDCEAT------FRHCDLDNAGDLDVDEMTRQ 174
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein,
solution structure, backbone dynamic, structural
genomics; NMR {Homo sapiens}
Length = 71
Score = 32.1 bits (74), Expect = 0.005
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNP---LVQRVIDIFDEDGNGEVDF 91
+ L FR D D G +++DE ++ L Q + +I D D +G V++
Sbjct: 3 AGLEDLQVAFRAFDQDGDGHITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNY 61
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin;
EF-hands, calcium, metal binding protein; 2.17A {Bos
taurus} PDB: 2f2p_A
Length = 179
Score = 33.3 bits (77), Expect = 0.005
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
++I + F D D G ++ E + L QNP +Q +I+ D DGNG +DF
Sbjct: 8 EQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 66
Score = 29.8 bits (68), Expect = 0.086
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDE----FMSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
+EIR FR D D +G +S E +L E + V +I D DG+G+V++
Sbjct: 84 EEIREA---FRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNY 139
Score = 25.9 bits (58), Expect = 2.1
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 18/78 (23%)
Query: 33 KIDADEI----RRLGKRFRK---------LDLDNSGALSIDEFMSLPELQQNPL-----V 74
I E+ R LG+ + +D D +G + EF+++ + +
Sbjct: 27 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEI 86
Query: 75 QRVIDIFDEDGNGEVDFK 92
+ +FD+DGNG +
Sbjct: 87 REAFRVFDKDGNGYISAA 104
Score = 24.8 bits (55), Expect = 5.1
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 21/76 (27%)
Query: 33 KIDADEIRR----LGKRF---------RKLDLDNSGALSIDEFMS-----LPELQQNPLV 74
I A E+R LG++ R+ D+D G ++ +EF+
Sbjct: 100 YISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAKGGGGGAAARK 159
Query: 75 QRVID---IFDEDGNG 87
+ + + +
Sbjct: 160 EVIRNKIRAIGKMARV 175
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A
{Kluyveromyces lactis} PDB: 1lkj_A 1f54_A 1f55_A
Length = 147
Score = 32.8 bits (76), Expect = 0.005
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDF 91
++I + F D DNSG++S E + + L +P V +++ D DGN ++F
Sbjct: 8 EQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEF 66
Score = 25.1 bits (56), Expect = 2.9
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 18/78 (23%)
Query: 33 KIDADEI----RRLGKRFRK---------LDLDNSGALSIDEFMSLPELQQNPL-----V 74
I A E+ R LG + +D+D + A+ EF++L Q +
Sbjct: 27 SISASELATVMRSLGLSPSEAEVADLMNEIDVDGNHAIEFSEFLALMSRQLKCNDSEQEL 86
Query: 75 QRVIDIFDEDGNGEVDFK 92
+FD++G+G +
Sbjct: 87 LEAFKVFDKNGDGLISAA 104
Score = 24.7 bits (55), Expect = 4.0
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 8/59 (13%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
E+ F+ D + G +S E S+ E + V ++ DG+GE++
Sbjct: 84 QELLEA---FKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREVS-DGSGEINI 138
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide
compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB:
3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Length = 143
Score = 32.8 bits (76), Expect = 0.006
Identities = 12/59 (20%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
++ + + + F D D +G + + E +++ L P ++++I D++G G+++F
Sbjct: 3 EQKQEIREAFDLFDADGTGTIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNF 61
Score = 29.4 bits (67), Expect = 0.095
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
+EI + F+ D D +G +S L E + +Q +ID D DG+GEV
Sbjct: 79 EEILKA---FKLFDDDETGKISFKNLKRVAKELGENLTDEELQEMIDEADRDGDGEVSE 134
Score = 27.8 bits (63), Expect = 0.38
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 18/78 (23%)
Query: 33 KIDADE----IRRLGKRFRK---------LDLDNSGALSIDEFMSLPELQQNPL-----V 74
ID E +R LG +K +D + +G ++ +F+++ + + +
Sbjct: 22 TIDVKELKVAMRALGFEPKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEI 81
Query: 75 QRVIDIFDEDGNGEVDFK 92
+ +FD+D G++ FK
Sbjct: 82 LKAFKLFDDDETGKISFK 99
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo
pealeii}
Length = 191
Score = 32.9 bits (75), Expect = 0.006
Identities = 8/83 (9%), Positives = 25/83 (30%), Gaps = 20/83 (24%)
Query: 29 LSLNKIDADEIRRLGKRFRKL-DLDNSGALSIDEFMSLPE--------LQQNPLVQRVID 79
++ +++ + ++ + F D ++ G + D+F +
Sbjct: 1 MAAHQLSDFQRNKILRVFNTFYDCNHDGVIEWDDFELAIKKICNLHSWPTDGKKHNEARA 60
Query: 80 IF-----------DEDGNGEVDF 91
DE+ + +V
Sbjct: 61 TLKLIWDGLRKYADENEDEQVTK 83
Score = 32.5 bits (74), Expect = 0.010
Identities = 6/65 (9%), Positives = 14/65 (21%), Gaps = 2/65 (3%)
Query: 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDEDGNG 87
+ + + F D + E+ + D + G
Sbjct: 99 KGESLPEWLTKYMNFMFDVNDTSGDNIIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKT 158
Query: 88 EVDFK 92
V +
Sbjct: 159 MVTRE 163
Score = 29.0 bits (65), Expect = 0.18
Identities = 6/60 (10%), Positives = 19/60 (31%), Gaps = 13/60 (21%)
Query: 46 FRKLDLDNSGALSIDEFMSL-------------PELQQNPLVQRVIDIFDEDGNGEVDFK 92
+ D + ++ +E++ + + + D+ D G+ +D
Sbjct: 70 RKYADENEDEQVTKEEWLKMWAECVKSVEKGESLPEWLTKYMNFMFDVNDTSGDNIIDKH 129
Score = 27.1 bits (60), Expect = 0.70
Identities = 7/44 (15%), Positives = 11/44 (25%), Gaps = 11/44 (25%)
Query: 33 KIDADEIRRLGKR-----------FRKLDLDNSGALSIDEFMSL 65
ID E + F L ++ + F L
Sbjct: 125 IIDKHEYSTVYMSYGIPKSDCDAAFDTLSDGGKTMVTREIFARL 168
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 33.1 bits (75), Expect = 0.006
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 12/70 (17%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEF------------MSLPELQQNPLVQRVIDIFD 82
D K +RK D D+SG +S E +P + + ++ IFD
Sbjct: 99 PLDNSVEFMKIWRKYDADSSGYISAAELKNFLKDLFLQHKKKIPPNKLDEYTDAMMKIFD 158
Query: 83 EDGNGEVDFK 92
++ +G +D
Sbjct: 159 KNKDGRLDLN 168
Score = 32.0 bits (72), Expect = 0.018
Identities = 8/77 (10%), Positives = 27/77 (35%), Gaps = 17/77 (22%)
Query: 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS--------------LPELQQNPLVQ 75
+ +DA ++ ++ D D++G + E + + + + +
Sbjct: 4 AFANLDAAGFLQI---WQHFDADDNGYIEGKELDDFFRHMLKKLQPKDKITDERVQQIKK 60
Query: 76 RVIDIFDEDGNGEVDFK 92
+ +D +G + +
Sbjct: 61 SFMSAYDATFDGRLQIE 77
Score = 28.5 bits (63), Expect = 0.30
Identities = 11/70 (15%), Positives = 23/70 (32%), Gaps = 12/70 (17%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEF------------MSLPELQQNPLVQRVIDIFD 82
+ R K F D+ +GAL E S+ + + ++ D
Sbjct: 191 QVERKRDFEKIFAHYDVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCD 250
Query: 83 EDGNGEVDFK 92
+ +G++
Sbjct: 251 MNKDGKIQKS 260
Score = 25.0 bits (54), Expect = 4.7
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 16/63 (25%)
Query: 46 FRKLDLDNSGALSIDEFMSLPELQQNPLVQ----------------RVIDIFDEDGNGEV 89
+ D + G L +++ + LQ+N L+Q ++ +D G +
Sbjct: 154 MKIFDKNKDGRLDLNDLARILALQENFLLQFKMDASSQVERKRDFEKIFAHYDVSRTGAL 213
Query: 90 DFK 92
+
Sbjct: 214 EGP 216
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal
binding Pro; NMR {Glycine max}
Length = 92
Score = 31.8 bits (73), Expect = 0.008
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 34 IDADEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEV 89
+D D L + F+ D D +G +S E + L + V+++I D DG+G+V
Sbjct: 3 MDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQV 62
Query: 90 DF 91
++
Sbjct: 63 NY 64
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4
PDB: 2pas_A 3pat_A
Length = 110
Score = 31.8 bits (73), Expect = 0.009
Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 10/69 (14%)
Query: 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPL----VQRVIDIFD 82
L + A++++ K F+ +D D SG + +E + L + + D
Sbjct: 35 GLKAMSANDVK---KVFKAIDADASGFIEEEELKFVLKSFAADGRDLTDAETKAFLKAAD 91
Query: 83 EDGNGEVDF 91
+DG+G++
Sbjct: 92 KDGDGKIGI 100
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Length = 94
Score = 31.9 bits (73), Expect = 0.009
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVD 90
D D + + FR D D +G +S E + L + V +I D DG+G+V+
Sbjct: 24 DTDSEEEIREAFRVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVN 83
Query: 91 F 91
+
Sbjct: 84 Y 84
>2sas_A Sarcoplasmic calcium-binding protein; 2.40A {Branchiostoma
lanceolatum} SCOP: a.39.1.5
Length = 185
Score = 32.2 bits (73), Expect = 0.011
Identities = 13/65 (20%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP-LVQRVIDIFDEDGNG 87
S+ + A R+ F+ +D+ G + ++EF + Q V V ++ + G
Sbjct: 95 SVADLPAWCQNRIPFLFKGMDVSGDGIVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKV 154
Query: 88 EVDFK 92
D
Sbjct: 155 TFDLN 159
Score = 28.0 bits (62), Expect = 0.35
Identities = 7/78 (8%), Positives = 27/78 (34%), Gaps = 20/78 (25%)
Query: 34 IDADEIRRLGKRFRK-LDLDNSGALSIDEFMSLPE--------LQQNPLVQRVIDIF--- 81
++ + +++ F LD+++ G++ ++F + + + +
Sbjct: 2 LNDFQKQKIKFTFDFFLDMNHDGSIQDNDFEDMMTRYKEVNKGSLSDADYKSMQASLEDE 61
Query: 82 --------DEDGNGEVDF 91
D + + V +
Sbjct: 62 WRDLKGRADINKDDVVSW 79
Score = 26.8 bits (59), Expect = 1.00
Identities = 4/44 (9%), Positives = 12/44 (27%), Gaps = 11/44 (25%)
Query: 33 KIDADEIRRLGKR-----------FRKLDLDNSGALSIDEFMSL 65
+D +E + K + + ++ + L
Sbjct: 121 IVDLEEFQNYCKNFQLQCADVPAVYNVITDGGKVTFDLNRYKEL 164
Score = 26.4 bits (58), Expect = 1.5
Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 13/60 (21%)
Query: 46 FRKLDLDNSGALSIDEFMSL-------------PELQQNPLVQRVIDIFDEDGNGEVDFK 92
+ D++ +S +E++++ + + D G+G VD +
Sbjct: 66 KGRADINKDDVVSWEEYLAMWEKTIATCKSVADLPAWCQNRIPFLFKGMDVSGDGIVDLE 125
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium
binding, ME binding protein-toxin complex; 2.20A
{Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Length = 169
Score = 32.2 bits (74), Expect = 0.011
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 19 SSIKPSTELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---V 74
+ + + + ++ + + + F D D SG + E +++ L P +
Sbjct: 7 TVVSARRDQKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEI 66
Query: 75 QRVIDIFDEDGNGEVDF 91
+++I D+DG+G +DF
Sbjct: 67 KKMISEIDKDGSGTIDF 83
Score = 29.9 bits (68), Expect = 0.073
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
+EI + FR D DNSG ++I + L E +Q +I D + + E+D
Sbjct: 101 EEILKA---FRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAEADRNDDNEIDE 156
Score = 27.2 bits (61), Expect = 0.75
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 18/78 (23%)
Query: 33 KIDADE----IRRLGKRFRK---------LDLDNSGALSIDEFMSLPELQQNPL-----V 74
IDA E +R LG +K +D D SG + +EF+++ + +
Sbjct: 44 TIDAKELKVAMRALGFEPKKEEIKKMISEIDKDGSGTIDFEEFLTMMTAKMGERDSREEI 103
Query: 75 QRVIDIFDEDGNGEVDFK 92
+ +FD+D +G + K
Sbjct: 104 LKAFRLFDDDNSGTITIK 121
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A
{Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A
1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A
2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B*
2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Length = 148
Score = 32.1 bits (74), Expect = 0.012
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
++I + F D D G ++ E + L QNP +Q +I+ D DGNG +DF
Sbjct: 7 EQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDF 65
Score = 29.4 bits (67), Expect = 0.12
Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 7/59 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
+E+ F+ D D +G +S E +L E + V +I D DG+G +++
Sbjct: 83 EELIEA---FKVFDRDGNGLISAAELRHVMTNLGEKLTDDEVDEMIREADIDGDGHINY 138
Score = 26.3 bits (59), Expect = 1.3
Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 18/78 (23%)
Query: 33 KIDADEI----RRLGKRFRK---------LDLDNSGALSIDEFMSLPELQQNPL-----V 74
I E+ R LG+ + +D D +G + EF+SL + +
Sbjct: 26 TITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLSLMARKMKEQDSEEEL 85
Query: 75 QRVIDIFDEDGNGEVDFK 92
+FD DGNG +
Sbjct: 86 IEAFKVFDRDGNGLISAA 103
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation,
calcium, metal binding protein; 1.95A {Gallus gallus}
PDB: 2kqy_A
Length = 109
Score = 31.5 bits (72), Expect = 0.014
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 10/68 (14%)
Query: 31 LNKIDADEIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPL----VQRVIDIFDE 83
L+ D+I+ K F LD D SG + +E F+ L + + D
Sbjct: 36 LSSKTPDQIK---KVFGILDQDKSGFIEEEELQLFLKNFSSSARVLTSAETKAFLAAGDT 92
Query: 84 DGNGEVDF 91
DG+G++
Sbjct: 93 DGDGKIGV 100
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15);
calcium binding, signaling domain, NPF binding, FW
binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP:
a.39.1.6
Length = 95
Score = 31.2 bits (71), Expect = 0.014
Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 34 IDADEIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDGNGEVD 90
+ E + + F K D D G +S E L L + + D G++
Sbjct: 4 VSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLL-AHIWSLCDTKDCGKLS 62
Query: 91 F 91
Sbjct: 63 K 63
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially
structured protein, CAM-like; NMR {Entamoeba
histolytica} PDB: 2lc5_A
Length = 85
Score = 30.7 bits (70), Expect = 0.020
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
+E + + F+ D DN L+ +E + L NP + ++ +D+D +G+ D
Sbjct: 11 EEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVKDYDKDNSGKFDQ 69
>2bl0_C Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 142
Score = 30.9 bits (71), Expect = 0.025
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPL---VQRVIDIFDEDGNGEVDF 91
D++ + F D + +G ++ + + L + + + D GNG++ F
Sbjct: 3 DQVSEFKEAFELFDSERTGFITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQF 61
Score = 25.5 bits (57), Expect = 2.7
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 18/78 (23%)
Query: 33 KIDADEI----RRLGKRFRK---------LDLDNSGALSIDEFMSLPELQQNPL-----V 74
I + + ++ G R D +G + EF+S+ + +
Sbjct: 22 FITKEGLQTVLKQFGVRVEPAAFNEMFNEADATGNGKIQFPEFLSMMGRRMKQTTSEDIL 81
Query: 75 QRVIDIFDEDGNGEVDFK 92
++ FD +G G +
Sbjct: 82 RQAFRTFDPEGTGYIPKA 99
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding
protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A
2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A
1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Length = 108
Score = 30.2 bits (69), Expect = 0.033
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 31 LNKIDADEIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPL----VQRVIDIFDE 83
L D+++ K F +D D SG + DE F+ L + + D+
Sbjct: 35 LASKSLDDVK---KAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETKAFLADGDK 91
Query: 84 DGNGEVDF 91
DG+G +
Sbjct: 92 DGDGMIGV 99
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand
(helix-loop-helix) calcium binding protein, four-HEL
domain, protein engineering; HET: FME; 1.44A {Bos
taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A
1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A
1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Length = 76
Score = 29.5 bits (67), Expect = 0.041
Identities = 14/63 (22%), Positives = 27/63 (42%), Gaps = 11/63 (17%)
Query: 37 DEIRRLGKRFRKLDLD--NSGALSIDEFMS-LPELQQNPL-----VQRVIDIFDEDGNGE 88
+EI+ F + +S +E + L + L + +I+ D++G+GE
Sbjct: 5 EEIKGA---FEVFAAKEGDPNQISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGE 61
Query: 89 VDF 91
V F
Sbjct: 62 VSF 64
Score = 23.7 bits (52), Expect = 7.6
Identities = 5/31 (16%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEFMSL 65
+ + ++D + G +S +EF+ +
Sbjct: 43 GMSTLDEM---IEEVDKNGDGEVSFEEFLVM 70
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B*
1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B*
1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Length = 166
Score = 30.6 bits (70), Expect = 0.041
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDFK 92
D I F+ LD D G++ + ++ + F D G VD+K
Sbjct: 95 DVIMGA---FKVLDPDGKGSIKKSFLEELLTTGGGRFTPEEIKNMWAAFPPDVAGNVDYK 151
Score = 29.5 bits (67), Expect = 0.11
Identities = 10/61 (16%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 32 NKIDADEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDGNGEVD 90
+ D EI + F +D + G + D+ + + + + +D ++ +G ++
Sbjct: 17 SMFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPIN 76
Query: 91 F 91
F
Sbjct: 77 F 77
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP:
a.39.1.4
Length = 109
Score = 29.9 bits (68), Expect = 0.045
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 7/70 (10%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPL----VQRVIDIF 81
+ + A + K F +D D SG + DE F+ + L + +
Sbjct: 31 FAKVGLTAKSADDIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAETKAFLKAG 90
Query: 82 DEDGNGEVDF 91
D DG+G +
Sbjct: 91 DSDGDGAIGV 100
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform;
phosphorylation, 2D crystalline arrays, myosin
regulation, M light chains, structural protein; 20.00A
{Gallus gallus}
Length = 143
Score = 30.2 bits (69), Expect = 0.048
Identities = 11/60 (18%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDFK 92
D IR F D + SG + D ++ + + V + D G ++
Sbjct: 76 DVIRNA---FACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYREAPIDKKGNFNYV 132
>1xk4_A Calgranulin A; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1mr8_A
Length = 93
Score = 29.4 bits (66), Expect = 0.059
Identities = 9/46 (19%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 52 DNSGALSIDEFMSL-----PELQQNPLVQRVIDIFDEDGNGEVDFK 92
N A+ D+ L P+ + D + +G V+F+
Sbjct: 24 GNFHAVYRDDLKKLLETESPQYIRKKGADVWFKELDINTDGAVNFQ 69
Score = 25.5 bits (56), Expect = 1.7
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 25 TELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL 65
TE + K AD F++LD++ GA++ EF+ L
Sbjct: 40 TESPQYIRKKGADVW------FKELDINTDGAVNFQEFLIL 74
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.060
Identities = 5/26 (19%), Positives = 13/26 (50%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSID 60
+ +++L + D++ AL+I
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIK 43
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal
binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Length = 158
Score = 29.8 bits (68), Expect = 0.066
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 33 KIDADEIRRLGKRFRKLD-LDNSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNG 87
K+ +++++ L FR + + SG +S D+ + L L ++++ID FD GNG
Sbjct: 6 KLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNG 65
Query: 88 EVDF 91
++DF
Sbjct: 66 DIDF 69
Score = 29.1 bits (66), Expect = 0.14
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 7/59 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
E+R + FR D + +G +S D L E + + +ID D DG+G VDF
Sbjct: 91 QELR---EAFRLYDKEGNGYISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDF 146
Score = 25.6 bits (57), Expect = 2.0
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 22/82 (26%)
Query: 33 KIDADEI----RRLGKRFRK---------LDLDNSGALSIDEFMSLPELQQNPLVQRVID 79
++ D+I LG + K D +G + D F + V
Sbjct: 30 RVSTDQIGIILEVLGIQQTKSTIRQLIDEFDPFGNGDIDFDSFKIIGARFLGEEVNPEQM 89
Query: 80 ---------IFDEDGNGEVDFK 92
++D++GNG +
Sbjct: 90 QQELREAFRLYDKEGNGYISTD 111
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP:
a.39.1.1
Length = 78
Score = 28.9 bits (65), Expect = 0.081
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 52 DNSGALSIDEFMSL-----PELQQNP-LVQRVIDIFDEDGNGEVDFK 92
+ LS +E L P L + P + + D++G+GEV F+
Sbjct: 21 GDPNQLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFE 67
Score = 23.8 bits (52), Expect = 6.5
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 46 FRKLDLDNSGALSIDEFMSL 65
F++LD + G +S +EF L
Sbjct: 53 FQELDKNGDGEVSFEEFQVL 72
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein,
regulation, complex, calcium, EF- hand, calmodulin,
ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis
thaliana}
Length = 135
Score = 29.6 bits (67), Expect = 0.090
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPL----VQRVIDIFDEDGNGEV 89
+ + L K F L ++ + + L + Q ++ D DG+G +
Sbjct: 35 VEEFVSELCKGFSLLADPERHLITAESLRRNSGILGIEGMSKEDAQGMVREGDLDGDGAL 94
Query: 90 DF 91
+
Sbjct: 95 NQ 96
Score = 24.6 bits (54), Expect = 4.8
Identities = 2/21 (9%), Positives = 6/21 (28%)
Query: 71 NPLVQRVIDIFDEDGNGEVDF 91
P + ++ E +
Sbjct: 2 EPTEKSMLLETTSTTKMETKY 22
Score = 24.2 bits (53), Expect = 7.2
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 8/68 (11%)
Query: 28 NLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIFD 82
L + + ++ + + R+ DLD GAL+ EF L PE+ ++ +
Sbjct: 68 ILGIEGMSKEDAQGM---VREGDLDGDGALNQTEFCVLMVRLSPEMMEDAETWLEKALTQ 124
Query: 83 EDGNGEVD 90
E N +
Sbjct: 125 ELCNHNLS 132
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal
transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB:
2jc2_A
Length = 198
Score = 29.3 bits (66), Expect = 0.11
Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Query: 24 STELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDE 83
+ + + + R + LD D SG + +EF L + ++ FD
Sbjct: 60 QSGIAGGYKPFNLETCRLM---VSMLDRDMSGTMGFNEFKELWAVLNG--WRQHFISFDT 114
Query: 84 DGNGEVDF 91
D +G VD
Sbjct: 115 DRSGTVDP 122
Score = 28.2 bits (63), Expect = 0.29
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 44 KRFRKLDLDNSGALSIDEFMS-LPELQQNP--------LVQRVIDIFDEDGNGEVDFK 92
+ G + DE L + + ++ + D D +G + F
Sbjct: 36 YGYFAAVAGQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSGTMGFN 93
Score = 26.7 bits (59), Expect = 1.2
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 39 IRRLGKRFRKLDLDNSGA--LSIDEFMSL 65
+R L FR+ D G D+F+
Sbjct: 166 LRALTDSFRRRDTAQQGVVNFPYDDFIQC 194
Score = 26.3 bits (58), Expect = 1.6
Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 21/74 (28%)
Query: 33 KIDADEIRRLGKR-------FRKLDLDNSGALSIDEF--------MSLPELQQNPLVQRV 77
+ +E + L F D D SG + E L N + +R
Sbjct: 89 TMGFNEFKELWAVLNGWRQHFISFDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRY 148
Query: 78 IDIFDEDGNGEVDF 91
NG++ F
Sbjct: 149 ------STNGKITF 156
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light
chain, cell cycle protein; 1.65A {Saccharomyces
cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A
2fce_A
Length = 148
Score = 29.1 bits (66), Expect = 0.12
Identities = 14/66 (21%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 30 SLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDG 85
+ K ++ K F+ D +++G +S+ + L E + V ++ + D
Sbjct: 76 ATTKAKTEDFV---KAFQVFDKESTGKVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDS 132
Query: 86 NGEVDF 91
NGE+D+
Sbjct: 133 NGEIDY 138
Score = 25.2 bits (56), Expect = 2.8
Identities = 11/51 (21%), Positives = 17/51 (33%), Gaps = 5/51 (9%)
Query: 46 FRKLDLDNSGALSIDEF-MSLPELQQNPL---VQRVID-IFDEDGNGEVDF 91
F D GA++ D L + NP VQ +I+ +
Sbjct: 10 FTLFDKKGQGAIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTL 60
Score = 24.5 bits (54), Expect = 5.8
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 24/84 (28%)
Query: 33 KIDADEI----RRLGKRFRK----------LDLDNSGALSIDEF---MSLPELQQNPLVQ 75
I D + R +G L ++ +L++D+ + + E + + +
Sbjct: 20 AIAKDSLGDYLRAIGYNPTNQLVQDIINADSSLRDASSLTLDQITGLIEVNEKELDATTK 79
Query: 76 RVID-------IFDEDGNGEVDFK 92
+ +FD++ G+V
Sbjct: 80 AKTEDFVKAFQVFDKESTGKVSVG 103
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.13
Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 21/87 (24%)
Query: 7 IHEVSNDIKNDWSSI---KPSTELNLSLNKIDADEIRRLGKRFRKLDL--DN----SGAL 57
I + N W + K +T + SLN ++ E R K F +L + + + L
Sbjct: 337 IRDGLATWDN-WKHVNCDKLTTIIESSLNVLEPAEYR---KMFDRLSVFPPSAHIPTILL 392
Query: 58 SI--------DEFMSLPELQQNPLVQR 76
S+ D + + +L + LV++
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKYSLVEK 419
>3a4u_B Multiple coagulation factor deficiency protein 2; lectin, ergic,
ER, golgi, transport, disulfide bond, endopla reticulum,
ER-golgi transport; 1.84A {Homo sapiens} PDB: 2vrg_A
3lcp_C
Length = 143
Score = 28.8 bits (64), Expect = 0.18
Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 16/62 (25%)
Query: 46 FRKLDLDNSGALSIDEFMS----------------LPELQQNPLVQRVIDIFDEDGNGEV 89
F+ D D + L E + + E + ++ V+ D++ +G +
Sbjct: 74 FKMHDYDGNNLLDGLELSTAITHVHKEEGSEQAPLMSEDELINIIDGVLRDDDKNNDGYI 133
Query: 90 DF 91
D+
Sbjct: 134 DY 135
Score = 24.9 bits (54), Expect = 3.7
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 34 IDADEIRRLGKR-FRKLDLDNSGALSIDEFMS 64
+ DE+ + R D +N G + EF
Sbjct: 109 MSEDELINIIDGVLRDDDKNNDGYIDYAEFAK 140
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto;
diacyl lipopeptide, innate immunity, Leu repeat, cell
membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG;
2.90A {Mus musculus}
Length = 562
Score = 29.1 bits (65), Expect = 0.20
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 25 TELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDE-FMSLPELQQ 70
LNLS N + R L + + LDL N+ +SI + L LQ+
Sbjct: 431 LVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQE 477
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP;
2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A
2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A*
1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A*
3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Length = 161
Score = 28.7 bits (65), Expect = 0.21
Identities = 10/59 (16%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
+E+ FR D + G + ++E + E ++ ++ D++ +G +D+
Sbjct: 95 EELS---DLFRMFDKNADGYIDLEELKIMLQATGETITEDDIEELMKDGDKNNDGRIDY 150
Score = 28.7 bits (65), Expect = 0.22
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 37 DEIRRLGKRFRKLDLD-NSGALSIDEF-MSLPELQQNPL---VQRVIDIFDEDGNGEVDF 91
++ F L G++S E + L QNP +Q +ID DEDG+G VDF
Sbjct: 15 EQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDF 74
Score = 26.0 bits (58), Expect = 1.9
Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 21/81 (25%)
Query: 33 KIDADEI----RRLGKRFRK---------LDLDNSGALSIDEFMSL--PELQQNPLVQRV 77
I E+ R LG+ +D D SG + DEF+ + ++ + +
Sbjct: 35 SISTKELGKVMRMLGQNPTPEELQEMIDEVDEDGSGTVDFDEFLVMMVRSMKDDSKGKSE 94
Query: 78 IDI------FDEDGNGEVDFK 92
++ FD++ +G +D +
Sbjct: 95 EELSDLFRMFDKNADGYIDLE 115
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis
semifasciata} SCOP: a.39.1.4
Length = 109
Score = 28.3 bits (64), Expect = 0.22
Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 27 LNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIF-- 81
+L K D ++ + F LD D SG + +E + L
Sbjct: 30 FHLVGLKGKTDA--QVKEVFEILDKDQSGFIEEEELKGVLKGFSAHGRDLNDTETKALLA 87
Query: 82 --DEDGNGEVDF 91
D D +G++
Sbjct: 88 AGDSDHDGKIGA 99
>2h2k_A Protein S100-A13; calcium binding protein, metal binding protein;
2.00A {Homo sapiens} PDB: 1yur_A 1yus_A 1yut_A 1yuu_A
2egd_A 2k8m_B 2ki4_B* 2ki6_C* 2kot_A* 2l5x_B 2cxj_A
Length = 106
Score = 27.9 bits (62), Expect = 0.28
Identities = 9/46 (19%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 53 NSGALSIDEFMSLPE------LQQNPLVQRVIDIFDEDGNGEVDFK 92
+LS++EF L L+ + + D + + E+ F
Sbjct: 37 RKDSLSVNEFKELVTQQLPHLLKDVGSLDEKMKSLDVNQDSELKFN 82
Score = 24.8 bits (54), Expect = 3.5
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 42 LGKRFRKLDLDNSGALSIDEFMSL 65
L ++ + LD++ L +E+ L
Sbjct: 64 LDEKMKSLDVNQDSELKFNEYWRL 87
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould,
EF-hand; 1.75A {Physarum polycephalum}
Length = 145
Score = 27.9 bits (63), Expect = 0.33
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
E+ FR LD + +G + E ++L + + V+ ++ G+G +++
Sbjct: 76 KEMLDA---FRALDKEGNGTIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINY 131
>1alv_A Calpain, S-camld; calcium binding, calmodulin like, domain of
cystein protease; 1.90A {Sus scrofa} SCOP: a.39.1.8
PDB: 1alw_A* 1nx0_A 1nx1_A 1nx2_A 1nx3_A* 1kfu_S 1kfx_S
3bow_B 1u5i_B 1df0_B 3df0_B 1aj5_A 1dvi_A 1np8_A
Length = 173
Score = 28.2 bits (63), Expect = 0.35
Identities = 13/68 (19%), Positives = 32/68 (47%), Gaps = 13/68 (19%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMSL--------PELQQNPL----VQRVIDIFDED 84
+E+R+ + F +L + +S E M++ P+L+ + + ++ + D D
Sbjct: 1 EEVRQFRRLFAQLA-GDDMEVSATELMNILNKVVTRHPDLKTDGFGIDTCRSMVAVMDSD 59
Query: 85 GNGEVDFK 92
G++ F+
Sbjct: 60 TTGKLGFE 67
Score = 27.8 bits (62), Expect = 0.47
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 49 LDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNG 87
+D D +G L +EF L + Q + FD D +G
Sbjct: 56 MDSDTTGKLGFEEFKYLWNNIKK--WQAIYKQFDVDRSG 92
Score = 27.0 bits (60), Expect = 0.79
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 10/69 (14%)
Query: 33 KIDADEIRRLGKR-------FRKLDLDNSGALSIDEF-MSLPEL--QQNPLVQRVIDIFD 82
K+ +E + L +++ D+D SG + E + N + +I
Sbjct: 63 KLGFEEFKYLWNNIKKWQAIYKQFDVDRSGTIGSSELPGAFEAAGFHLNEHLYSMIIRRY 122
Query: 83 EDGNGEVDF 91
D G +DF
Sbjct: 123 SDEGGNMDF 131
Score = 25.1 bits (55), Expect = 3.8
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 39 IRRLGKRFRKLDLDNSGA--LSIDEFMSL 65
+ + + F+ LD D +G ++I E++ L
Sbjct: 141 LDAMFRAFKSLDKDGTGQIQVNIQEWLQL 169
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100
protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2
PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Length = 100
Score = 27.4 bits (61), Expect = 0.35
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 25 TELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL 65
L+ D L F K D + + EF+SL
Sbjct: 37 ENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSL 77
Score = 24.4 bits (53), Expect = 4.9
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 61 EFMSLPELQQNPLVQRVIDIFDEDGNGEVDFK 92
F+S + + + V + D++ + ++DF
Sbjct: 41 NFLSACDKKGTNYLADVFEKKDKNEDKKIDFS 72
>2kax_A Protein S100-A5; EF-hand, calcium binding protien, calcium,
polymorphism, structural genomics, spine2, structural
proteomics in europe, spine; NMR {Homo sapiens} PDB:
2kay_A
Length = 92
Score = 27.4 bits (61), Expect = 0.36
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 6/47 (12%)
Query: 52 DNSGALSIDEFMSL--PELQQNPL----VQRVIDIFDEDGNGEVDFK 92
+ LS E L EL + + ++ D++ + E+DFK
Sbjct: 24 GSKLTLSRKELKELIKKELCLGEMKESSIDDLMKSLDKNSDQEIDFK 70
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal
binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8
PDB: 1k95_A 1f4q_A 1f4o_A
Length = 165
Score = 27.7 bits (62), Expect = 0.37
Identities = 12/61 (19%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 27 LNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGN 86
+N + + + R + LD D++G + + F L + D+DG+
Sbjct: 30 INGTYSPFSLETCRIM---IAMLDRDHTGKMGFNAFKELWAALNA--WKENFMTVDQDGS 84
Query: 87 G 87
G
Sbjct: 85 G 85
Score = 26.9 bits (60), Expect = 0.84
Identities = 10/56 (17%), Positives = 19/56 (33%), Gaps = 10/56 (17%)
Query: 46 FRKLDLDNSGALSIDEFMS-LPELQQNP--------LVQRVIDIFDEDGNGEVDFK 92
F + G + +E L + N + +I + D D G++ F
Sbjct: 6 FSAVA-GQDGEVDAEELQRCLTQSGINGTYSPFSLETCRIMIAMLDRDHTGKMGFN 60
Score = 26.2 bits (58), Expect = 1.6
Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 13/70 (18%)
Query: 33 KIDADEIRRLGKR-------FRKLDLDNSGALSIDEFM----SLPELQQNPLVQRVIDIF 81
K+ + + L F +D D SG + E + + ++ +
Sbjct: 56 KMGFNAFKELWAALNAWKENFMTVDQDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRY 115
Query: 82 DEDGNGEVDF 91
++ G + F
Sbjct: 116 SKN--GRIFF 123
Score = 25.0 bits (55), Expect = 3.5
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 39 IRRLGKRFRKLDLDNSGA--LSIDEFMSL 65
+R L FRK D G+ D+F+
Sbjct: 133 LRALTDFFRKRDHLQQGSANFIYDDFLQG 161
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium
free, signaling protein; HET: MSE; 1.15A {Homo sapiens}
SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A
1jwd_A 2cnp_A 2jtt_A
Length = 90
Score = 27.0 bits (60), Expect = 0.46
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Query: 52 DNSGALSIDEFMSLPELQ-------QNPLVQRVIDIFDEDGNGEVDFK 92
+ LS E L + + Q+ + R+++ D + + EV+F+
Sbjct: 24 GDKHTLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQ 71
Score = 24.7 bits (54), Expect = 3.5
Identities = 3/22 (13%), Positives = 10/22 (45%)
Query: 44 KRFRKLDLDNSGALSIDEFMSL 65
+ LD + ++ E+++
Sbjct: 55 RLMEDLDRNKDQEVNFQEYVTF 76
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases,
like, EF-hand, structural genomics, structural genomics
CON SGC, hydrolase; 1.80A {Homo sapiens}
Length = 174
Score = 27.6 bits (61), Expect = 0.52
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 39 IRRLGKRFRKLDLDNSGA-LSIDEFMSL 65
+ + K FR L D G L+ E+MSL
Sbjct: 143 LEAMAKTFRNLSKDGKGLYLTEMEWMSL 170
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand;
NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Length = 140
Score = 27.1 bits (61), Expect = 0.59
Identities = 10/76 (13%), Positives = 25/76 (32%), Gaps = 16/76 (21%)
Query: 33 KIDADE----IRRLGKR-----FRKLDLDNSGALSIDEF---MSLPELQQNPLVQRVI-- 78
+I +R G+ +++ + +++F ++ P P
Sbjct: 21 RIPKTSIGDLLRACGQNPTLAEITEIESTLPAEVDMEQFLQVLNRPNGFDMPGDPEEFVK 80
Query: 79 --DIFDEDGNGEVDFK 92
+FD+D G +
Sbjct: 81 GFQVFDKDATGMIGVG 96
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 27.3 bits (61), Expect = 0.59
Identities = 10/65 (15%), Positives = 20/65 (30%), Gaps = 13/65 (20%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNP--------LVQRVIDIFDEDGNG 87
D + F + G + DE L + + ++ + D D +G
Sbjct: 2 DPLYGY---FASVA-GQDGQIDADELQRCLTQSGIAGGYKPFNLETCRLMVSMLDRDMSG 57
Query: 88 EVDFK 92
+ F
Sbjct: 58 TMGFN 62
Score = 27.3 bits (61), Expect = 0.68
Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 49 LDLDNSGALSIDEFMSL-PELQQNPLVQRVIDIFDEDGNGEVDF 91
LD D SG + +EF L L ++ FD D +G VD
Sbjct: 51 LDRDMSGTMGFNEFKELWAVLNG---WRQHFISFDSDRSGTVDP 91
Score = 25.8 bits (57), Expect = 2.0
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 11/69 (15%)
Query: 33 KIDADEIRRLGKR-------FRKLDLDNSGALSIDEFM----SLPELQQNPLVQRVIDIF 81
+ +E + L F D D SG + E ++ V + +
Sbjct: 58 TMGFNEFKELWAVLNGWRQHFISFDSDRSGTVDPQELQKALTTMGFRLNPQTVNSIAKRY 117
Query: 82 DEDGNGEVD 90
G D
Sbjct: 118 STSGKITFD 126
Score = 25.0 bits (55), Expect = 3.4
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 39 IRRLGKRFRKLDLDNSGA--LSIDEFMSL 65
+R L FR+ D G S D+F+
Sbjct: 135 LRALTDSFRRRDSAQQGMVNFSYDDFIQC 163
>2lnk_A Protein S100-A4; EF-hand, calcium binding, all alpha, metal
binding protein, binding protein; NMR {Homo sapiens}
PDB: 3c1v_A
Length = 113
Score = 27.2 bits (60), Expect = 0.61
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 52 DNSGALSIDEFMSL-----PELQQNPL----VQRVIDIFDEDGNGEVDFK 92
+ L+ E L P Q+++ D + + EVDF+
Sbjct: 36 GDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQ 85
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15,
EPS15; EH domain, EF-hand, solution structure, S100
protein; NMR {Mus musculus} SCOP: a.39.1.6
Length = 99
Score = 26.7 bits (59), Expect = 0.67
Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 29 LSLNKIDADEIRRLGKRFRKLDLDNSGALSIDE---FMSLPELQQNPLVQRVIDIFDEDG 85
LSL ++ + K +R+++ N+G + + F+ L L ++ D+ D DG
Sbjct: 1 LSLTQL-SSGNPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLIL-GKIWDLADTDG 58
Query: 86 NGEVDFKG 93
G + +
Sbjct: 59 KGVLSKQE 66
>1qxp_A MU-like calpain; M-calpain, MU-calpain, catalytic triad, Ca(2+)
requirement, hydrolase chimera; 2.80A {Rattus
norvegicus} SCOP: a.39.1.8 a.39.1.8 b.14.1.1 d.3.1.3
Length = 900
Score = 27.4 bits (60), Expect = 0.80
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 39 IRRLGKRFRKLDLDNSGA--LSIDEFMSL 65
+ + + FR LD + +G ++I E++ L
Sbjct: 868 LDAMFRAFRSLDKNGTGQIQVNIQEWLQL 896
Score = 26.7 bits (58), Expect = 1.3
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 49 LDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGEVD 90
+D D +G L +EF L + Q + F+ D +G +
Sbjct: 783 MDSDTTGKLGFEEFKYLWNNIKKW--QGIYKRFETDRSGTIG 822
Score = 26.3 bits (57), Expect = 1.7
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 20/74 (27%)
Query: 33 KIDADEIRRLGKR-------FRKLDLDNSGALSIDEF--------MSLPELQQNPLVQRV 77
K+ E L R FRK DLD SG++S E LP +V R
Sbjct: 593 KLGLVEFNILWNRIRNYLTIFRKFDLDKSGSMSAYEMRMAIEAAGFKLPCQLHQVIVAR- 651
Query: 78 IDIFDEDGNGEVDF 91
F D +DF
Sbjct: 652 ---FA-DDELIIDF 661
Score = 26.3 bits (57), Expect = 2.0
Identities = 12/72 (16%), Positives = 26/72 (36%), Gaps = 16/72 (22%)
Query: 33 KIDADEIRRLGKR-------FRKLDLDNSGALSIDEFMSLPELQQ------NPLVQRVID 79
K+ +E + L +++ + D SG + +E + + +I
Sbjct: 790 KLGFEEFKYLWNNIKKWQGIYKRFETDRSGTIGSNELPGA--FEAAGFHLNQHIYSMIIR 847
Query: 80 IFDEDGNGEVDF 91
+ D G +DF
Sbjct: 848 RYS-DETGNMDF 858
>3zwh_A Protein S100-A4; Ca-binding protein-motor protein complex, S100
proteins, EF-; 1.94A {Homo sapiens}
Length = 104
Score = 26.4 bits (58), Expect = 0.85
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 52 DNSGALSIDEFMSL-----PELQQNPL----VQRVIDIFDEDGNGEVDFK 92
+ L+ E L P Q+++ D + + EVDF+
Sbjct: 27 GDKFKLNKSELKELLTRELPSWLGKRTDEAAFQKLMSNLDSNRDNEVDFQ 76
Score = 23.7 bits (51), Expect = 9.9
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 42 LGKRFRKLDLDNSGALSIDEFMSL 65
K LD + + E+
Sbjct: 58 FQKLMSNLDSNRDNEVDFQEYCVF 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor
complex, structural genomics, protein structure
initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens}
SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Length = 461
Score = 26.8 bits (60), Expect = 0.93
Identities = 5/34 (14%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 25 TELNLSLNKIDADEIRRLG---KRFRKLDLDNSG 55
L++ ++ L ++ + + LD+ G
Sbjct: 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG 39
>2wcb_A Protein S100-A12; calcium signalling, HOST-parasite response,
metal binding PR; 1.73A {Homo sapiens} PDB: 1odb_A*
2wc8_A 2wcf_A 2wce_A 1e8a_A 1gqm_A
Length = 95
Score = 26.3 bits (58), Expect = 1.0
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 9/50 (18%)
Query: 52 DNSGALSIDEFMSL-----PELQQNPL----VQRVIDIFDEDGNGEVDFK 92
+ LS E L +N + + D + + +VDF+
Sbjct: 26 GHFDTLSKGELKQLLTKELANTIKNIKDKAVIDEIFQGLDANQDEQVDFQ 75
Score = 24.0 bits (52), Expect = 6.6
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 42 LGKRFRKLDLDNSGALSIDEFMSL 65
+ + F+ LD + + EF+SL
Sbjct: 57 IDEIFQGLDANQDEQVDFQEFISL 80
>3nso_A Protein S100-A3; EF-hand, Ca2+, Zn2+ binding, metal binding
protein; 1.45A {Homo sapiens} PDB: 3nsi_A 1kso_A 3nsk_A
3nsl_A
Length = 101
Score = 26.4 bits (58), Expect = 1.0
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 60 DEFMSLPELQQNP-LVQRVIDIFDEDGNGEVDFK 92
E + + + + + D + + EVDF
Sbjct: 40 KELATWTPTEFRECDYNKFMSVLDTNKDCEVDFV 73
Score = 23.7 bits (51), Expect = 8.7
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 42 LGKRFRKLDLDNSGALSIDEFMSL 65
K LD + + E++
Sbjct: 55 YNKFMSVLDTNKDCEVDFVEYVRS 78
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II,
calcium/phospholipid binding protein,
calcium-phospholipid protein complex; 2.25A {Homo
sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Length = 96
Score = 25.9 bits (57), Expect = 1.2
Identities = 8/49 (16%), Positives = 20/49 (40%), Gaps = 9/49 (18%)
Query: 53 NSGALSIDEFMSL---------PELQQNPLVQRVIDIFDEDGNGEVDFK 92
+ G L+ ++ L + V +++ D+ +G+V F+
Sbjct: 21 DKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQ 69
Score = 23.6 bits (51), Expect = 10.0
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 42 LGKRFRKLDLDNSGALSIDEFMSL 65
+ K + LD G + F SL
Sbjct: 51 VDKIMKDLDQCRDGKVGFQSFFSL 74
>1w7j_B Myosin light chain 1; motor protein, unconventional myosin, myosin
V, chicken, molecular motor, ATPase, ELC, IQ motif,
muscle protein, ATP-binding; HET: ADP; 2A {Homo sapiens}
SCOP: a.39.1.5 PDB: 1w7i_B* 1oe9_B* 3j04_C 1br1_B*
1br4_B* 1i84_T* 3dtp_C 2w4a_C 2w4g_C 2w4h_C
Length = 151
Score = 26.4 bits (59), Expect = 1.2
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVD 90
+ FR D + +G + E +L E V+ V+ ED NG ++
Sbjct: 82 GQGTYEDYLEGFRVFDKEGNGKVMGAELRHVLTTLGEKMTEEEVETVLA-GHEDSNGCIN 140
Query: 91 FK 92
++
Sbjct: 141 YE 142
Score = 24.5 bits (54), Expect = 5.2
Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMS-LPELQQNPLVQRVIDI-----FDEDGN 86
+ + D++ + F D G + + + L QNP V+ + DE +
Sbjct: 3 EFNKDQLEEFKEAFELFDRVGDGKILYSQCGDVMRALGQNPTNAEVLKVLGNPKSDELKS 62
Query: 87 GEVDF 91
VDF
Sbjct: 63 RRVDF 67
Score = 24.1 bits (53), Expect = 7.4
Identities = 12/63 (19%), Positives = 23/63 (36%), Gaps = 8/63 (12%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEFMSL-----PELQQNPL--VQRVIDIFDEDGNGEV 89
E+ ++ K D S + + F+ + Q +FD++GNG+V
Sbjct: 46 AEVLKVLGNP-KSDELKSRRVDFETFLPMLQAVAKNRGQGTYEDYLEGFRVFDKEGNGKV 104
Query: 90 DFK 92
Sbjct: 105 MGA 107
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle,
myosin subfragment 2, heavy meromyosin, essential light
chain; 20.00A {Avicularia avicularia}
Length = 196
Score = 26.5 bits (59), Expect = 1.3
Identities = 13/60 (21%), Positives = 19/60 (31%), Gaps = 8/60 (13%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDFK 92
D I F D + G + + E V + + DGNG +D K
Sbjct: 126 DVIV---NAFNLFD-EGDGKCKEETLKRSLTTWGEKFSQDEVDQALSEAPIDGNGLIDIK 181
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell
membrane, hydrolase, MEMB protease, thiol protease,
phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A
1df0_A 1u5i_A 1kfu_L 1kfx_L
Length = 714
Score = 26.7 bits (58), Expect = 1.3
Identities = 9/29 (31%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 39 IRRLGKRFRKLDLDNSGA--LSIDEFMSL 65
+ L K F++LD +N+G L + ++S
Sbjct: 669 LEILFKIFKQLDPENTGTIQLDLISWLSF 697
Score = 25.9 bits (56), Expect = 2.8
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 20/74 (27%)
Query: 33 KIDADEIRRLGKR-------FRKLDLDNSGALSIDEF--------MSLPELQQNPLVQRV 77
K+ E L + +R++D+D SG ++ E LP +V R
Sbjct: 591 KLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNSYEMRKALEEAGFKLPCQLHQVIVAR- 649
Query: 78 IDIFDEDGNGEVDF 91
F D +DF
Sbjct: 650 ---FA-DDELIIDF 659
Score = 25.2 bits (54), Expect = 5.0
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 49 LDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGEVD 90
LD D SG L + EF L + Q++ D D +G ++
Sbjct: 584 LDEDGSGKLGLKEFYIL--WTKIQKYQKIYREIDVDRSGTMN 623
>1xk4_C Calgranulin B; S100 family, heterotetramer, metal binding
protein; HET: FLC; 1.80A {Homo sapiens} SCOP: a.39.1.2
PDB: 1irj_A*
Length = 113
Score = 26.0 bits (57), Expect = 1.4
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 25 TELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL 65
+L L K + +E + + LD + LS +EF+ L
Sbjct: 42 KDLQNFLKKENKNE-KVIEHIMEDLDTNADKQLSFEEFIML 81
Score = 24.5 bits (53), Expect = 5.6
Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 10/51 (19%)
Query: 52 DNSGALSIDEFMSL-----PELQQNPL-----VQRVIDIFDEDGNGEVDFK 92
+ L+ EF L + ++ +++ D + + ++ F+
Sbjct: 26 GHPDTLNQGEFKELVRKDLQNFLKKENKNEKVIEHIMEDLDTNADKQLSFE 76
>3nxa_A Protein S100-A16; S100 family, calcium binding protein, APO,
EF-hand calcium binding proteins, S100 proteins,
protein dynamics, binding protein; 2.10A {Homo sapiens}
PDB: 2l0u_A 2l0v_A 2l50_A 2l51_A
Length = 100
Score = 25.9 bits (57), Expect = 1.5
Identities = 6/57 (10%), Positives = 17/57 (29%), Gaps = 9/57 (15%)
Query: 45 RFRKLDLDNSGALSIDEFMSL-----PELQQNPLVQRVIDIF----DEDGNGEVDFK 92
++ +S F + + + ++ D D + +G + F
Sbjct: 19 KYVSKYSLVKNKISKSSFREMLQKELNHMLSDTGNRKAADKLIQNLDANHDGRISFD 75
Score = 23.6 bits (51), Expect = 9.6
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 46 FRKLDLDNSGALSIDEFMSL 65
+ LD ++ G +S DE+ +L
Sbjct: 61 IQNLDANHDGRISFDEYWTL 80
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine
kinase), PHYB1; bacteriophytochrome chromophore binding
domain; HET: LBV; 1.79A {Rhodopseudomonas palustris}
Length = 327
Score = 26.5 bits (58), Expect = 1.5
Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 3/66 (4%)
Query: 27 LNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEFMSL--PELQQNPLVQRV-IDIFDE 83
L L + D + + R A +++ + E+++ RV I F
Sbjct: 117 LELEPPQRDVRYPQAFFRSVRSAIRRLQAAETLESACAAAAQEVREITGFDRVMIYRFAS 176
Query: 84 DGNGEV 89
D +GEV
Sbjct: 177 DFSGEV 182
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural
genomics, PSI-B protein structure initiative, NEW YORK
structural genomics consortium; 1.54A {Homo sapiens}
PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Length = 93
Score = 25.5 bits (56), Expect = 1.6
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 52 DNSGALSIDEFMSL-----PELQQNPL----VQRVIDIFDEDGNGEVDFK 92
+ L+ E L P Q+++ D + + EVDF+
Sbjct: 24 GDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLDSNRDNEVDFQ 73
Score = 24.0 bits (52), Expect = 7.5
Identities = 4/24 (16%), Positives = 7/24 (29%)
Query: 42 LGKRFRKLDLDNSGALSIDEFMSL 65
K LD + + E+
Sbjct: 55 FQKLMSNLDSNRDNEVDFQEYCVF 78
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain,
receptor, PAS domain, chromophore, sensory transduction;
HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Length = 520
Score = 26.2 bits (57), Expect = 1.7
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 67 ELQQNPLVQRV-IDIFDEDGNGEV 89
E+++ RV + FDE+ +G+V
Sbjct: 163 EVRRMTGFDRVMLYRFDENNHGDV 186
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta
7 linker; phosphorylation, cytosolic,
transferase-transferase inhibitor complex; HET: DB8;
3.55A {Homo sapiens}
Length = 444
Score = 26.1 bits (58), Expect = 1.9
Identities = 6/47 (12%), Positives = 10/47 (21%), Gaps = 1/47 (2%)
Query: 46 FRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
L D S ++ L Q +G+
Sbjct: 388 HIHLMGDESACIAYIRITQYLDAGGIPRTAQSEETRVWHRRDGKWQI 434
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z
1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z
3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z
2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Length = 156
Score = 25.6 bits (57), Expect = 2.0
Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 18/78 (23%)
Query: 33 KIDADE----IRRLG--------KRFRKLDLDNSGALSIDEFMSL--PELQQNPLVQRVI 78
+DA + R LG +L +EF+ +
Sbjct: 27 AVDAFKLGDVCRCLGINPRNEDVFAVGGTHKMGEKSLPFEEFLPAYEGLMDCEQGTFADY 86
Query: 79 ----DIFDEDGNGEVDFK 92
FD +G G +
Sbjct: 87 MEAFKTFDREGQGFISGA 104
Score = 24.4 bits (54), Expect = 6.5
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 33 KIDADEIRRLGKRFRKLDL--DNSGALSIDEF-MSLPELQQNP---LVQRVIDIFDEDGN 86
K+ DEI L F D GA+ + L NP V V + G
Sbjct: 2 KLSQDEIDDLKDVFELFDFWDGRDGAVDAFKLGDVCRCLGINPRNEDVFAVGGT-HKMGE 60
Query: 87 GEVDF 91
+ F
Sbjct: 61 KSLPF 65
Score = 24.4 bits (54), Expect = 7.0
Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 6/65 (9%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFD--EDGN 86
+ + F+ D + G +S E +L E + V +I + D ED
Sbjct: 77 DCEQGTFADYMEAFKTFDREGQGFISGAELRHVLTALGERLSDEDVDEIIKLTDLQEDLE 136
Query: 87 GEVDF 91
G V +
Sbjct: 137 GNVKY 141
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor
supressor, CAL binding protein; 1.30A {Homo sapiens}
PDB: 2rgi_A 4duq_A
Length = 98
Score = 25.6 bits (56), Expect = 2.1
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 9/50 (18%)
Query: 52 DNSGALSIDEFMSL-----PELQQNPLVQRVID----IFDEDGNGEVDFK 92
+ LS E L P + + + DE+ + +VDF+
Sbjct: 25 GDKFKLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSLDENSDQQVDFQ 74
>2y5i_A S100Z, S100 calcium binding protein Z; metal-binding protein,
EF-hand, calcium regulation, oligomer neuronal
development, spine2; 2.03A {Danio rerio}
Length = 99
Score = 25.6 bits (56), Expect = 2.2
Identities = 11/50 (22%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 52 DNSGALSIDEFMSL-----PELQQNP----LVQRVIDIFDEDGNGEVDFK 92
+ LS E L + + LV+++++ D + + EVDF
Sbjct: 24 GDKYKLSKGELKELLNAELTDFLMSQKDPMLVEKIMNDLDSNKDNEVDFN 73
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer,
X-type four-helix bundle, metal binding protein; NMR
{Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A
2kbm_A 2l0p_A 2jpt_A
Length = 93
Score = 25.1 bits (55), Expect = 2.2
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 60 DEFMSLPELQQNP-LVQRVIDIFDEDGNGEVDFK 92
E S ++Q++ V +++ DE+G+GEVDF+
Sbjct: 39 TELSSFLDVQKDADAVDKIMKELDENGDGEVDFQ 72
Score = 23.6 bits (51), Expect = 9.3
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 42 LGKRFRKLDLDNSGALSIDEFMSL 65
+ K ++LD + G + EF+ L
Sbjct: 54 VDKIMKELDENGDGEVDFQEFVVL 77
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase;
structural genomics; 2.30A {Campylobacter jejuni subsp}
Length = 266
Score = 25.7 bits (57), Expect = 2.2
Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 33 KIDADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVIDIFDEDGNGEVDFK 92
+ D DE+ RL + F+ L + +L E Q++ V+++ E G ++
Sbjct: 205 RFDKDEVDRLSRAFKTLFRQG---DLKENAKNLLENQESENVKKMCHFILETKRGIPVYR 261
Query: 93 GK 94
GK
Sbjct: 262 GK 263
>1j55_A S-100P protein; metal binding protein; 2.00A {Homo sapiens} SCOP:
a.39.1.2 PDB: 1ozo_A
Length = 95
Score = 25.2 bits (55), Expect = 2.4
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 9/50 (18%)
Query: 52 DNSGALSIDEFMSL-----PELQQNPLVQRVIDIF----DEDGNGEVDFK 92
++ L+ E L P Q+ + +D D +G+ +VDF
Sbjct: 23 GSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKDLDANGDAQVDFS 72
>1z3e_A Regulatory protein SPX; bacterial transcription regulation,
disulfide stress; 1.50A {Bacillus subtilis} SCOP:
c.47.1.12 PDB: 3gfk_A 3ihq_A
Length = 132
Score = 25.3 bits (56), Expect = 2.5
Identities = 9/39 (23%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 39 IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNP-LVQR 76
I K F+KL+++ ++ + + L + ++P L++R
Sbjct: 58 ISTRSKVFQKLNVNVE-SMPLQDLYRL--INEHPGLLRR 93
>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold,
structural genomics, BSG structure funded by NIH; 1.89A
{Aquifex aeolicus} SCOP: d.92.1.15
Length = 150
Score = 25.7 bits (57), Expect = 2.6
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 23 PSTELNLSLNKIDADEIRRLGKRFRKLD 50
+ EL++ + D EIR L K +RK D
Sbjct: 39 NNVELSVYI--TDDQEIRELNKTYRKKD 64
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral
signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A
{Homo sapiens}
Length = 372
Score = 25.8 bits (57), Expect = 2.6
Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 19 SSIKPSTELNLSLNKIDADEIRRLG---KRFRKLDLDN 53
S E+NL+ ++D +R L R RKL L
Sbjct: 98 SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL 135
>2ool_A Sensor protein; bacteriophytochrome, photoconversion,
photoreceptor, biliver signaling protein; HET: LBV;
2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1
d.110.3.9
Length = 337
Score = 25.7 bits (56), Expect = 2.8
Identities = 6/24 (25%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 67 ELQQNPLVQRV-IDIFDEDGNGEV 89
E+++ R+ + F D +G+V
Sbjct: 172 EVRRITGFDRIKVYQFAADWSGQV 195
>1qls_A S100C protein, calgizzarin; metal-binding protein/inhibitor, S100
family, EF-hand protein, complex (ligand/annexin),
ligand of annexin II; 2.3A {Sus scrofa} SCOP: a.39.1.2
PDB: 1nsh_A
Length = 99
Score = 24.8 bits (54), Expect = 3.1
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 52 DNSGALSIDEFMSL-----PELQQNPLVQRVID----IFDEDGNGEVDFK 92
N+ +S EF+ QN V+D D D +G++DF+
Sbjct: 27 GNNTKISKTEFLIFMNTELAAFTQNQKDPGVLDRMMKKLDLDSDGQLDFQ 76
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding
protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A
1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X*
3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A*
3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Length = 92
Score = 24.8 bits (54), Expect = 3.3
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 52 DNSGALSIDEFMSL---------PELQQNPLVQRVIDIFDEDGNGEVDFK 92
+ L E L E+++ +V +V++ D +G+GE DF+
Sbjct: 23 GDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSNGDGECDFQ 72
>1rw1_A Conserved hypothetical protein YFFB; thioredoxin fold, structure
2 function project, S2F, structu genomics, unknown
function; HET: MSE IPA; 1.02A {Pseudomonas aeruginosa}
SCOP: c.47.1.12
Length = 114
Score = 24.8 bits (55), Expect = 3.4
Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 43 GKRFRKLDLDNSGALSIDEFMSLPELQQNP-LVQR 76
G FRKLD L + + L + P +++R
Sbjct: 59 GTTFRKLDEAQKADLDEAKAIEL--MLAQPSMIKR 91
>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein
structure initiative, nysgxrc target T842, PFAM family
UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15
Length = 155
Score = 25.3 bits (56), Expect = 3.4
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 21 IKPSTELNLSLNKIDADEIRRLGKRFRKLD 50
+ +E+ + + +D E L +R D
Sbjct: 35 FQEESEVTIRV--VDTAESHSLNLTYRGKD 62
>1snl_A Nucleobindin 1, calnuc; EF-hand, calcium-binding, metal binding
protein; NMR {Homo sapiens} SCOP: a.39.1.7
Length = 103
Score = 24.9 bits (54), Expect = 3.5
Identities = 5/32 (15%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 33 KIDADEIRRLGKR-FRKLDLDNSGALSIDEFM 63
+ +E R+ + + +D + ++++EF+
Sbjct: 64 REMEEERLRMREHVMKNVDTNQDRLVTLEEFL 95
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling
protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB:
3c2w_A* 3g6o_A* 3ibr_A*
Length = 505
Score = 25.4 bits (55), Expect = 3.6
Identities = 9/25 (36%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 66 PELQQNPLVQRV-IDIFDEDGNGEV 89
EL++ RV F D +GEV
Sbjct: 149 DELRRMTGYDRVMAYRFRHDDSGEV 173
>3l78_A Regulatory protein SPX; transcription, transcriptional factor,
disulfide bond, redox-active center, transcription
regulati; 1.90A {Streptococcus mutans}
Length = 120
Score = 24.8 bits (55), Expect = 3.7
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 39 IRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNP-LVQR 76
I K F+KLD+D LS+ E ++L + +NP L++R
Sbjct: 57 ISTRSKVFQKLDIDVD-ELSVSELINL--ISKNPSLLRR 92
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP,
hydrolase, protein structure initiative, S2F, structure
2 function project; NMR {Haemophilus influenzae}
Length = 154
Score = 24.9 bits (55), Expect = 3.9
Identities = 6/29 (20%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 22 KPSTELNLSLNKIDADEIRRLGKRFRKLD 50
E+ + + +D E L +R D
Sbjct: 36 GNEVEMTVRI--VDEAESHELNLTYRGKD 62
>1tvi_A Hypothetical UPF0054 protein TM1509; alpha + beta, mixed
4-stranded beta sheet, four helix bundle, structural
genomics; NMR {Thermotoga maritima} SCOP: d.92.1.15
Length = 172
Score = 25.0 bits (55), Expect = 3.9
Identities = 9/30 (30%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 21 IKPSTELNLSLNKIDADEIRRLGKRFRKLD 50
+N+ L + DEI+ L ++FR D
Sbjct: 50 EIGDVHVNVIL--VSEDEIKELNQQFRGQD 77
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A
{Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y
1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y
3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y
2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Length = 156
Score = 24.8 bits (55), Expect = 4.1
Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 37 DEIRRLGKRFRKLDLDNSGALSIDEF----MSLPELQQNPLVQRVIDIFDEDGNGEVDFK 92
+ IR F D + L+I+ ++ + ++ +G G+ D+
Sbjct: 87 ETIR---NAFAMFDEQETKKLNIEYIKDLLENMGDNFNKDEMRMTFKEAPVEG-GKFDYV 142
>4dxt_A SUN domain-containing protein 2; beta-sandwich, LINC complex,
structural protein; 2.22A {Homo sapiens} PDB: 3unp_A
4dxr_A* 4dxs_A*
Length = 198
Score = 25.0 bits (54), Expect = 4.3
Identities = 5/29 (17%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 63 MSLPELQQNPLVQRVIDIFDEDGNGEVDF 91
++ ++ +V++ + + ED G D+
Sbjct: 4 VTEEQVHH--IVKQALQRYSEDRIGLADY 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1,
lipopeptide, innate immunity, glycoPro immune response,
inflammatory response, leucine-rich repeat membrane,
receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Length = 520
Score = 25.2 bits (55), Expect = 4.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 25 TELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDE-FMSLPELQQ 70
LN+S N + R L R + LDL ++ SI + + L LQ+
Sbjct: 402 LSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQE 448
>3ppe_A Vascular endothelial cadherin; extracellular cadherin (EC)
domain, beta barrel, IG-domain L domain swapped dimer
interface; 2.10A {Gallus gallus}
Length = 203
Score = 24.6 bits (54), Expect = 5.1
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 63 MSLPELQQNPLVQRVIDIFDEDGNGEV 89
M + E +PL V + GN
Sbjct: 7 MHIREEIDSPLPHHVGKLTSSVGNKNA 33
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion,
structural genomics, PSI, protein structur initiative,
structural genomics of pathogenic protozoa CONS SGPP;
1.70A {Plasmodium falciparum} PDB: 2auc_A
Length = 146
Score = 24.5 bits (54), Expect = 5.2
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 2/60 (3%)
Query: 35 DADEIRRLGKRFRKLDLDNSGALSIDEF-MSLPELQQNPLVQRVIDIFDE-DGNGEVDFK 92
D D + L K F D + +G L+ + L Q ID + +D+K
Sbjct: 79 DKDNVEELIKMFAHFDNNCTGYLTKSQMKNILTTWGDALTDQEAIDALNAFSSEDNIDYK 138
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory
light chain LC-2, mantle muscle; rigor-like, squid,
contractIle protein; 2.60A {Todarodes pacificus} PDB:
2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Length = 159
Score = 24.5 bits (54), Expect = 5.6
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 19/79 (24%)
Query: 33 KIDADEI----RRLG--------KRFRKLDLDNSGALSIDEFMSLPELQQNPLVQRVID- 79
+DA ++ R LG + A ++E + + E + D
Sbjct: 27 DVDAAKVGDLLRCLGMNPTEAQVHQHGGTKKMGEKAYKLEEILPIYEEMSSKDTGTAADE 86
Query: 80 ------IFDEDGNGEVDFK 92
FD +G G +
Sbjct: 87 FMEAFKTFDREGQGLISSA 105
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain,
phycocyanobilin, PCB, bacteriophytochrome,
cyanobacterial phytochrome, kinase; HET: CYC; NMR
{Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A*
Length = 172
Score = 24.5 bits (54), Expect = 6.0
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 81 FDEDGNGEV 89
FD +G+G V
Sbjct: 26 FDPEGHGTV 34
>3gkx_A Putative ARSC family related protein; ARSC family protein,
structural genomi 2, protein structure initiative;
2.20A {Bacteroides fragilis}
Length = 120
Score = 24.1 bits (53), Expect = 6.2
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 4/40 (10%)
Query: 39 IRRLGKRFRKLDL-DNSGALSIDEFMSLPELQQNP-LVQR 76
G +++L L ++ +E ++L L N LV+R
Sbjct: 61 FNTSGVVYKELKLSSKLPTMTEEEQIAL--LATNGKLVKR 98
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor,
fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus
radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A*
2o9b_A* 1ztu_A*
Length = 343
Score = 24.6 bits (53), Expect = 6.6
Identities = 5/9 (55%), Positives = 5/9 (55%)
Query: 81 FDEDGNGEV 89
F D GEV
Sbjct: 192 FAPDATGEV 200
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain,
phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB:
2lb9_A*
Length = 208
Score = 24.2 bits (53), Expect = 6.9
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 81 FDEDGNGEV 89
FD +G+G V
Sbjct: 56 FDPEGHGTV 64
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat,
asymmetric homodimer, glycoprotein, immune system; HET:
NAG FUC; 26.00A {Homo sapiens}
Length = 844
Score = 24.8 bits (54), Expect = 7.0
Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 7/73 (9%)
Query: 6 YIHEVSNDIKNDWSSIKPSTELNLSLNKIDADEIRRLGKRFRKLDLDNSGALSIDEF--- 62
Y++ + + + ++++ L+L+ N++ L LD+ + L+ +
Sbjct: 491 YLNSLPPGVFSHLTALR---GLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPNPDVFV 547
Query: 63 -MSLPELQQNPLV 74
+S+ ++ N +
Sbjct: 548 SLSVLDITHNKFI 560
>4eho_A Bacteriophytochrome, PAS/PAC sensor; photoreceptor,
bacteriopbhytochrome; HET: MSE BLA; 2.90A
{Rhodopseudomonas palustris tie-1}
Length = 635
Score = 24.4 bits (52), Expect = 7.7
Identities = 7/9 (77%), Positives = 8/9 (88%)
Query: 81 FDEDGNGEV 89
FDE G+GEV
Sbjct: 172 FDEQGHGEV 180
>1nub_A Basement membrane protein BM-40; extracellular module,
glycoprotein, anti-adhesive protein, C binding,
site-directed mutagenesis; HET: NAG; 2.80A {Homo
sapiens} SCOP: a.39.1.3 g.3.11.3 g.68.1.1 PDB: 2v53_A*
1bmo_A*
Length = 229
Score = 24.1 bits (51), Expect = 8.0
Identities = 8/47 (17%), Positives = 16/47 (34%), Gaps = 11/47 (23%)
Query: 28 NLSLNKIDADEIRRLGKRFRKL-----------DLDNSGALSIDEFM 63
+ + E+ L + DLDN +++DE+
Sbjct: 167 HPIDGYLSHTELAPLRAPLIPMEHCTTRFFETCDLDNDKYIALDEWA 213
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 24.3 bits (52), Expect = 8.2
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 25 TELNLSLNKIDA--DEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQ 69
T L+LS N++ A + L + L ++ ++D +LP LQ
Sbjct: 466 THLDLSHNRLRALPPALAAL-RCLEVLQASDNALENVDGVANLPRLQ 511
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase;
HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB:
3cgz_A 3cgy_A
Length = 152
Score = 24.1 bits (53), Expect = 8.3
Identities = 5/29 (17%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 34 IDADEIRRLGKRFRKLDLDNSGA---LSI 59
I + + R +++D G L++
Sbjct: 86 IPLSKREVIFDRGQRVDTLRPGQGVGLAV 114
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like
receptor, MD-2, LPS, leucine-rich repeat, glycoprotein,
immune response; HET: NAG BMA FUL; 1.90A {Eptatretus
burgeri}
Length = 306
Score = 24.2 bits (53), Expect = 9.6
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 25 TELNLSLNKIDADEIRRLG----KRFRKLDLDNSGALSIDE-FMSLPELQQ 70
T+L+LS N + + LDL +G +++ F+ L +L+
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEH 105
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148,
structural genomics, PSI-2, protein structure
initiative; 2.10A {Legionella pneumophila subsp}
Length = 362
Score = 24.3 bits (53), Expect = 9.6
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 25 TELNLSLNKID-------ADEIRRLGKRFRKLDLDNSGALSIDEFMSLPELQQNP 72
++ + +I ++ IR L + L N + + + E P
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIP 341
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.390
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,551,269
Number of extensions: 85200
Number of successful extensions: 1106
Number of sequences better than 10.0: 1
Number of HSP's gapped: 887
Number of HSP's successfully gapped: 533
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)