Query psy11008
Match_columns 96
No_of_seqs 96 out of 98
Neff 2.6
Searched_HMMs 29240
Date Fri Aug 16 15:49:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11008.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11008hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wi9_A Protein C20ORF116 homol 99.9 4.1E-28 1.4E-32 160.9 1.4 48 1-48 24-71 (72)
2 1ub9_A Hypothetical protein PH 97.5 0.0006 2E-08 41.2 6.9 55 2-56 34-91 (100)
3 3cuo_A Uncharacterized HTH-typ 97.4 0.00062 2.1E-08 41.2 6.8 55 2-56 42-96 (99)
4 2kko_A Possible transcriptiona 97.2 0.00092 3.1E-08 42.9 6.1 60 2-61 42-101 (108)
5 3jth_A Transcription activator 97.1 0.0023 7.7E-08 39.5 6.8 55 2-56 40-94 (98)
6 3f6v_A Possible transcriptiona 97.0 0.0027 9.1E-08 43.8 7.3 68 2-69 75-142 (151)
7 3f6o_A Probable transcriptiona 96.9 0.0028 9.6E-08 40.9 6.3 55 2-56 35-89 (118)
8 2oqg_A Possible transcriptiona 96.9 0.0036 1.2E-07 38.9 6.5 55 2-56 38-92 (114)
9 1r1u_A CZRA, repressor protein 96.8 0.0043 1.5E-07 39.2 6.5 55 2-56 43-97 (106)
10 3pqk_A Biofilm growth-associat 96.8 0.0035 1.2E-07 39.1 5.7 55 2-56 40-94 (102)
11 1tbx_A ORF F-93, hypothetical 96.8 0.0064 2.2E-07 37.4 6.7 51 5-55 33-83 (99)
12 1u2w_A CADC repressor, cadmium 96.7 0.0051 1.8E-07 40.1 6.1 55 2-56 60-114 (122)
13 2cg4_A Regulatory protein ASNC 96.7 0.0063 2.2E-07 40.3 6.6 55 2-56 26-92 (152)
14 2pn6_A ST1022, 150AA long hypo 96.6 0.004 1.4E-07 40.9 5.3 55 2-56 21-88 (150)
15 2qvo_A Uncharacterized protein 96.6 0.011 3.6E-07 36.7 6.9 54 2-55 34-87 (95)
16 3df8_A Possible HXLR family tr 96.5 0.012 4.3E-07 38.0 6.9 54 2-56 46-106 (111)
17 3tgn_A ADC operon repressor AD 96.5 0.004 1.4E-07 39.4 4.5 52 2-53 55-109 (146)
18 2hzt_A Putative HTH-type trans 96.4 0.013 4.6E-07 37.2 6.6 43 2-44 31-77 (107)
19 1q1h_A TFE, transcription fact 96.4 0.0047 1.6E-07 38.9 4.4 50 2-51 37-92 (110)
20 2hr3_A Probable transcriptiona 96.4 0.017 5.7E-07 36.5 7.0 54 2-55 54-110 (147)
21 3oop_A LIN2960 protein; protei 96.4 0.019 6.6E-07 36.4 7.2 55 2-56 55-112 (143)
22 2jsc_A Transcriptional regulat 96.4 0.0071 2.4E-07 39.2 5.3 53 2-54 38-90 (118)
23 1lj9_A Transcriptional regulat 96.3 0.021 7.2E-07 35.9 7.2 53 2-54 47-102 (144)
24 1r1t_A Transcriptional repress 96.3 0.014 4.7E-07 38.5 6.5 55 2-56 63-117 (122)
25 2dbb_A Putative HTH-type trans 96.3 0.012 4E-07 38.9 6.0 55 2-56 27-92 (151)
26 2pjp_A Selenocysteine-specific 96.2 0.026 9E-07 37.1 7.5 68 2-84 24-91 (121)
27 3eco_A MEPR; mutlidrug efflux 96.1 0.027 9.2E-07 35.4 6.9 55 2-56 51-108 (139)
28 3s2w_A Transcriptional regulat 96.1 0.028 9.5E-07 36.5 7.1 55 2-56 68-125 (159)
29 1sfx_A Conserved hypothetical 96.1 0.02 6.7E-07 34.2 5.9 49 2-50 38-88 (109)
30 1jgs_A Multiple antibiotic res 96.1 0.063 2.2E-06 33.5 8.4 54 2-55 52-108 (138)
31 2heo_A Z-DNA binding protein 1 96.0 0.007 2.4E-07 36.7 3.8 36 2-39 29-64 (67)
32 2p5v_A Transcriptional regulat 96.0 0.013 4.4E-07 39.3 5.3 55 2-56 28-95 (162)
33 3k0l_A Repressor protein; heli 96.0 0.027 9.4E-07 36.7 6.8 55 2-56 64-121 (162)
34 2nnn_A Probable transcriptiona 96.0 0.026 8.9E-07 35.1 6.4 53 2-54 56-111 (140)
35 3bdd_A Regulatory protein MARR 96.0 0.026 8.7E-07 35.2 6.3 48 2-49 49-99 (142)
36 2lkp_A Transcriptional regulat 96.0 0.025 8.4E-07 35.8 6.2 55 2-56 49-103 (119)
37 3cjn_A Transcriptional regulat 96.0 0.038 1.3E-06 35.6 7.2 52 2-53 70-124 (162)
38 3bja_A Transcriptional regulat 96.0 0.023 7.7E-07 35.3 5.9 53 2-54 51-106 (139)
39 2rdp_A Putative transcriptiona 95.9 0.036 1.2E-06 35.1 7.0 54 2-55 60-116 (150)
40 2eth_A Transcriptional regulat 95.9 0.039 1.3E-06 35.5 7.1 52 2-53 62-116 (154)
41 3bj6_A Transcriptional regulat 95.9 0.043 1.5E-06 34.8 7.2 53 2-54 58-113 (152)
42 2bv6_A MGRA, HTH-type transcri 95.9 0.024 8.4E-07 35.7 5.9 52 2-53 55-109 (142)
43 2w25_A Probable transcriptiona 95.9 0.0062 2.1E-07 40.3 3.2 55 2-56 25-91 (150)
44 3bro_A Transcriptional regulat 95.9 0.028 9.5E-07 35.1 6.1 52 2-53 54-108 (141)
45 2fbi_A Probable transcriptiona 95.9 0.023 7.8E-07 35.5 5.6 53 2-54 54-109 (142)
46 2gxg_A 146AA long hypothetical 95.8 0.051 1.8E-06 34.1 7.3 53 2-54 54-109 (146)
47 3hsr_A HTH-type transcriptiona 95.8 0.03 1E-06 35.7 6.2 55 2-56 54-111 (140)
48 2a61_A Transcriptional regulat 95.8 0.032 1.1E-06 35.0 6.1 52 2-53 51-105 (145)
49 2htj_A P fimbrial regulatory p 95.7 0.0093 3.2E-07 36.2 3.4 43 2-44 18-62 (81)
50 2e1c_A Putative HTH-type trans 95.7 0.013 4.5E-07 40.6 4.6 55 2-56 45-110 (171)
51 1s3j_A YUSO protein; structura 95.7 0.058 2E-06 34.3 7.3 53 2-54 55-110 (155)
52 1z7u_A Hypothetical protein EF 95.7 0.041 1.4E-06 35.1 6.6 45 2-46 39-87 (112)
53 2pg4_A Uncharacterized protein 95.7 0.033 1.1E-06 34.2 6.0 55 2-56 34-90 (95)
54 3nrv_A Putative transcriptiona 95.7 0.026 8.8E-07 35.8 5.6 55 2-56 58-115 (148)
55 2cyy_A Putative HTH-type trans 95.7 0.015 5.2E-07 38.5 4.5 55 2-56 25-90 (151)
56 3deu_A Transcriptional regulat 95.7 0.032 1.1E-06 37.1 6.1 55 2-56 72-129 (166)
57 2fbh_A Transcriptional regulat 95.7 0.044 1.5E-06 34.3 6.4 53 2-54 56-111 (146)
58 2nyx_A Probable transcriptiona 95.6 0.058 2E-06 35.6 7.3 54 2-55 63-119 (168)
59 1i1g_A Transcriptional regulat 95.6 0.031 1.1E-06 36.0 5.8 55 2-56 22-87 (141)
60 2cfx_A HTH-type transcriptiona 95.6 0.034 1.2E-06 36.7 6.0 55 2-56 23-88 (144)
61 3e6m_A MARR family transcripti 95.6 0.055 1.9E-06 35.2 7.0 55 2-56 71-128 (161)
62 2fsw_A PG_0823 protein; alpha- 95.6 0.06 2E-06 34.0 7.0 44 2-45 42-89 (107)
63 3f3x_A Transcriptional regulat 95.6 0.041 1.4E-06 34.9 6.1 55 2-56 54-111 (144)
64 3b73_A PHIH1 repressor-like pr 95.6 0.025 8.6E-07 38.1 5.4 45 2-49 31-77 (111)
65 3g3z_A NMB1585, transcriptiona 95.6 0.043 1.5E-06 34.8 6.1 55 2-56 49-106 (145)
66 1ufm_A COP9 complex subunit 4; 95.5 0.015 5.3E-07 37.5 4.0 42 1-42 33-74 (84)
67 3kp7_A Transcriptional regulat 95.5 0.028 9.5E-07 36.0 5.1 54 2-55 55-113 (151)
68 2fa5_A Transcriptional regulat 95.5 0.033 1.1E-06 35.8 5.5 54 2-55 67-123 (162)
69 3cdh_A Transcriptional regulat 95.5 0.052 1.8E-06 34.7 6.4 54 2-55 61-117 (155)
70 2pex_A Transcriptional regulat 95.4 0.028 9.7E-07 35.9 5.0 48 2-49 65-115 (153)
71 4hbl_A Transcriptional regulat 95.4 0.038 1.3E-06 35.6 5.5 55 2-56 59-116 (149)
72 2f2e_A PA1607; transcription f 95.3 0.082 2.8E-06 35.6 7.3 55 2-56 41-103 (146)
73 3fm5_A Transcriptional regulat 95.3 0.038 1.3E-06 35.3 5.4 55 2-56 58-115 (150)
74 2d1h_A ST1889, 109AA long hypo 95.3 0.083 2.8E-06 31.5 6.6 55 2-56 40-100 (109)
75 2b0l_A GTP-sensing transcripti 95.3 0.05 1.7E-06 35.4 6.0 49 2-50 47-97 (102)
76 2frh_A SARA, staphylococcal ac 95.3 0.034 1.2E-06 35.7 5.1 55 2-56 57-114 (127)
77 3nqo_A MARR-family transcripti 95.3 0.083 2.8E-06 35.9 7.3 55 2-56 61-118 (189)
78 3jw4_A Transcriptional regulat 95.3 0.014 4.9E-07 37.3 3.2 55 2-56 61-118 (148)
79 3bpv_A Transcriptional regulat 95.3 0.038 1.3E-06 34.4 5.1 52 2-53 47-101 (138)
80 2ia0_A Putative HTH-type trans 95.3 0.072 2.5E-06 36.8 7.0 55 2-56 35-107 (171)
81 3ech_A MEXR, multidrug resista 95.3 0.029 9.8E-07 35.6 4.6 54 2-55 55-111 (142)
82 3boq_A Transcriptional regulat 95.2 0.032 1.1E-06 35.8 4.8 54 2-55 66-122 (160)
83 2zkz_A Transcriptional repress 95.2 0.029 9.9E-07 35.3 4.5 52 2-54 45-96 (99)
84 1yyv_A Putative transcriptiona 95.2 0.075 2.6E-06 35.5 6.7 44 2-45 52-99 (131)
85 2qww_A Transcriptional regulat 95.0 0.08 2.7E-06 33.7 6.2 54 2-55 59-117 (154)
86 1qgp_A Protein (double strande 95.0 0.026 9E-07 35.3 3.8 38 2-39 35-72 (77)
87 1z91_A Organic hydroperoxide r 94.9 0.039 1.3E-06 34.8 4.4 49 2-50 58-109 (147)
88 1on2_A Transcriptional regulat 94.9 0.14 4.7E-06 32.8 7.2 48 2-52 26-73 (142)
89 4ev0_A Transcription regulator 94.8 0.03 1E-06 36.9 3.9 49 2-53 167-215 (216)
90 3u2r_A Regulatory protein MARR 94.8 0.053 1.8E-06 35.5 5.1 54 2-55 66-122 (168)
91 3r0a_A Putative transcriptiona 94.8 0.066 2.3E-06 35.0 5.4 54 2-56 46-103 (123)
92 3i4p_A Transcriptional regulat 94.5 0.027 9.1E-07 38.2 3.1 55 2-56 21-89 (162)
93 1ku9_A Hypothetical protein MJ 94.4 0.12 4.2E-06 32.0 5.8 40 2-41 45-87 (152)
94 2fxa_A Protease production reg 94.3 0.14 4.8E-06 35.8 6.5 55 2-56 66-123 (207)
95 2h09_A Transcriptional regulat 94.0 0.3 1E-05 31.8 7.2 49 2-53 58-106 (155)
96 4aik_A Transcriptional regulat 93.9 0.23 8E-06 32.8 6.7 54 2-55 50-106 (151)
97 4b8x_A SCO5413, possible MARR- 93.9 0.3 1E-05 31.9 7.1 52 2-53 55-109 (147)
98 2x4h_A Hypothetical protein SS 93.8 0.26 9E-06 31.3 6.6 47 2-52 35-81 (139)
99 3dv8_A Transcriptional regulat 93.8 0.14 5E-06 33.6 5.4 47 2-51 173-219 (220)
100 1lva_A Selenocysteine-specific 93.7 0.22 7.6E-06 36.5 6.9 67 2-84 161-227 (258)
101 3hrs_A Metalloregulator SCAR; 93.7 0.25 8.6E-06 35.1 7.0 73 2-82 24-96 (214)
102 3txn_A 26S proteasome regulato 93.4 0.078 2.7E-06 42.2 4.2 45 1-45 319-363 (394)
103 3tqn_A Transcriptional regulat 93.1 0.5 1.7E-05 30.4 7.1 47 2-51 37-83 (113)
104 3d0s_A Transcriptional regulat 93.0 0.2 6.9E-06 33.3 5.2 46 2-50 181-226 (227)
105 2zcw_A TTHA1359, transcription 92.9 0.21 7.2E-06 32.9 5.1 47 2-51 150-196 (202)
106 2fbk_A Transcriptional regulat 92.9 0.063 2.1E-06 35.8 2.6 54 2-55 90-146 (181)
107 3fx3_A Cyclic nucleotide-bindi 92.7 0.24 8.1E-06 33.2 5.3 47 2-52 182-228 (237)
108 1j5y_A Transcriptional regulat 92.6 0.28 9.7E-06 33.9 5.8 54 2-55 40-109 (187)
109 1ft9_A Carbon monoxide oxidati 92.4 0.18 6.2E-06 33.7 4.4 48 2-52 167-215 (222)
110 2qq9_A Diphtheria toxin repres 92.3 0.43 1.5E-05 33.9 6.5 52 2-56 28-79 (226)
111 3e6c_C CPRK, cyclic nucleotide 92.2 0.22 7.6E-06 34.0 4.7 48 2-52 181-228 (250)
112 4b4t_R RPN7, 26S proteasome re 92.2 0.16 5.3E-06 39.3 4.3 44 1-44 350-393 (429)
113 1p4x_A Staphylococcal accessor 92.0 0.46 1.6E-05 35.0 6.5 54 2-55 178-234 (250)
114 4a5n_A Uncharacterized HTH-typ 91.9 0.52 1.8E-05 32.1 6.3 55 2-56 43-107 (131)
115 1sd4_A Penicillinase repressor 91.9 1 3.6E-05 28.0 7.3 38 2-40 28-69 (126)
116 1okr_A MECI, methicillin resis 91.8 0.31 1.1E-05 30.3 4.7 47 2-48 28-79 (123)
117 2bgc_A PRFA; bacterial infecti 91.7 0.33 1.1E-05 32.9 5.1 48 2-53 173-222 (238)
118 3b02_A Transcriptional regulat 91.6 0.33 1.1E-05 31.8 4.9 46 2-50 143-188 (195)
119 3ic7_A Putative transcriptiona 91.6 0.26 9.1E-06 32.5 4.4 81 2-86 39-120 (126)
120 3l7w_A Putative uncharacterize 91.5 1.2 4.3E-05 28.3 7.4 54 3-56 31-88 (108)
121 2gau_A Transcriptional regulat 91.4 0.43 1.5E-05 31.8 5.3 47 2-51 184-230 (232)
122 3e97_A Transcriptional regulat 91.3 0.26 9E-06 32.8 4.2 47 2-51 179-225 (231)
123 1qbj_A Protein (double-strande 91.3 0.32 1.1E-05 31.0 4.4 43 2-44 31-73 (81)
124 1uly_A Hypothetical protein PH 91.2 0.76 2.6E-05 32.5 6.8 55 2-56 37-107 (192)
125 2wte_A CSA3; antiviral protein 91.1 0.32 1.1E-05 36.0 4.9 44 2-47 170-213 (244)
126 3cta_A Riboflavin kinase; stru 91.0 0.87 3E-05 32.0 6.9 50 2-51 31-80 (230)
127 3iuo_A ATP-dependent DNA helic 90.9 0.19 6.5E-06 33.7 3.2 72 1-78 35-108 (122)
128 2v7f_A RPS19, RPS19E SSU ribos 90.8 0.21 7.1E-06 35.3 3.4 54 2-56 71-139 (150)
129 4b4t_O 26S proteasome regulato 90.7 0.2 6.9E-06 38.7 3.6 41 2-42 311-351 (393)
130 4b4t_Q 26S proteasome regulato 90.6 0.28 9.7E-06 34.3 3.9 43 1-43 359-401 (434)
131 2co5_A Viral protein F93; vira 90.5 1.5 5.2E-05 28.5 7.2 55 2-56 32-88 (99)
132 1y0u_A Arsenical resistance op 90.4 0.42 1.4E-05 29.3 4.2 39 2-44 47-85 (96)
133 2esh_A Conserved hypothetical 90.1 0.48 1.7E-05 30.6 4.5 58 10-68 46-108 (118)
134 1fx7_A Iron-dependent represso 90.1 0.78 2.7E-05 32.5 5.9 51 2-55 28-78 (230)
135 2v79_A DNA replication protein 90.0 1.5 5.2E-05 29.8 7.2 54 2-56 55-113 (135)
136 2fmy_A COOA, carbon monoxide o 90.0 0.61 2.1E-05 30.9 5.0 45 2-50 171-217 (220)
137 1oyi_A Double-stranded RNA-bin 89.9 0.24 8.1E-06 32.5 2.9 30 2-31 34-63 (82)
138 4b4t_P 26S proteasome regulato 89.8 0.3 1E-05 38.2 3.9 43 1-43 362-404 (445)
139 2jt1_A PEFI protein; solution 89.7 0.45 1.5E-05 30.2 4.1 31 2-32 28-58 (77)
140 3k2z_A LEXA repressor; winged 89.5 0.3 1E-05 33.8 3.3 30 2-31 28-57 (196)
141 4fx0_A Probable transcriptiona 89.5 0.66 2.3E-05 30.5 4.9 52 2-54 56-110 (148)
142 3neu_A LIN1836 protein; struct 89.1 1.3 4.4E-05 29.0 6.1 73 2-81 41-115 (125)
143 1xn7_A Hypothetical protein YH 89.0 0.25 8.5E-06 31.4 2.4 30 2-31 20-49 (78)
144 2g9w_A Conserved hypothetical 89.0 1.7 5.8E-05 28.2 6.6 45 2-46 28-78 (138)
145 2ba3_A NIKA; dimer, bacterial 88.9 0.58 2E-05 26.6 3.8 29 38-82 19-47 (51)
146 2dk8_A DNA-directed RNA polyme 88.7 0.73 2.5E-05 30.2 4.6 38 2-40 33-71 (81)
147 2k9i_A Plasmid PRN1, complete 88.4 0.68 2.3E-05 25.8 3.8 29 39-83 14-42 (55)
148 2k02_A Ferrous iron transport 87.8 0.62 2.1E-05 30.5 3.8 31 2-32 20-50 (87)
149 3ihu_A Transcriptional regulat 87.6 1.3 4.4E-05 30.7 5.6 50 2-52 43-93 (222)
150 1hsj_A Fusion protein consisti 87.4 0.87 3E-05 34.3 4.9 55 2-56 424-481 (487)
151 3lmm_A Uncharacterized protein 87.3 0.58 2E-05 38.7 4.2 83 2-84 448-541 (583)
152 1xmk_A Double-stranded RNA-spe 87.2 0.94 3.2E-05 29.1 4.3 36 2-39 29-65 (79)
153 2hs5_A Putative transcriptiona 87.0 1.3 4.4E-05 31.5 5.4 49 2-51 55-104 (239)
154 1bia_A BIRA bifunctional prote 86.4 0.86 2.9E-05 34.2 4.4 45 2-48 23-74 (321)
155 2fu4_A Ferric uptake regulatio 86.3 1.1 3.9E-05 26.5 4.1 39 2-40 37-80 (83)
156 3by6_A Predicted transcription 86.2 1.8 6.1E-05 28.5 5.4 77 2-83 39-115 (126)
157 3la7_A Global nitrogen regulat 86.1 0.87 3E-05 31.1 3.9 44 2-48 197-240 (243)
158 3hhh_A Transcriptional regulat 85.8 3.9 0.00013 26.8 6.9 63 9-72 43-110 (116)
159 4ham_A LMO2241 protein; struct 85.7 2.3 7.8E-05 27.8 5.7 36 3-39 43-78 (134)
160 2vn2_A DNAD, chromosome replic 85.5 0.74 2.5E-05 30.4 3.2 54 2-56 55-113 (128)
161 4esf_A PADR-like transcription 85.4 5.4 0.00018 26.1 7.4 65 9-74 41-110 (117)
162 1xma_A Predicted transcription 84.9 2.8 9.7E-05 28.5 6.1 48 9-56 73-125 (145)
163 1mkm_A ICLR transcriptional re 84.8 2.3 7.7E-05 30.3 5.8 50 2-54 27-76 (249)
164 2gqq_A Leucine-responsive regu 84.3 0.2 6.7E-06 33.7 0.0 55 2-56 31-99 (163)
165 1yg2_A Gene activator APHA; vi 84.1 2.8 9.7E-05 28.6 5.8 48 9-56 34-86 (179)
166 3tdu_C Cullin-1, CUL-1; E2:E3, 83.9 0.77 2.6E-05 29.4 2.7 41 2-42 37-77 (77)
167 3ri2_A Transcriptional regulat 83.7 6.9 0.00024 26.0 7.5 49 8-56 48-100 (123)
168 3f8m_A GNTR-family protein tra 83.4 1.3 4.4E-05 32.0 4.0 36 2-39 40-75 (248)
169 1iuy_A Cullin-3 homologue; win 82.8 1.2 4E-05 29.4 3.3 41 2-42 52-92 (92)
170 2xvc_A ESCRT-III, SSO0910; cel 82.4 0.99 3.4E-05 28.8 2.7 28 2-29 29-56 (59)
171 3rkx_A Biotin-[acetyl-COA-carb 82.4 2.4 8.2E-05 32.3 5.4 26 2-27 23-48 (323)
172 1pdn_C Protein (PRD paired); p 81.7 1.6 5.4E-05 26.4 3.4 54 2-56 37-91 (128)
173 3ryp_A Catabolite gene activat 81.6 1.5 5E-05 28.5 3.4 37 2-42 171-207 (210)
174 1hw1_A FADR, fatty acid metabo 81.5 1.4 4.7E-05 30.5 3.5 37 2-39 35-71 (239)
175 1p4x_A Staphylococcal accessor 81.2 3.8 0.00013 30.1 5.9 48 2-49 54-104 (250)
176 3o2p_E Cell division control p 80.7 1.7 5.8E-05 28.5 3.5 40 2-42 49-88 (88)
177 2cpg_A REPA protein, transcrip 80.3 2.6 9E-05 22.7 3.7 29 39-83 7-35 (45)
178 2ek5_A Predicted transcription 80.1 4.1 0.00014 27.0 5.3 43 2-47 32-74 (129)
179 2p4w_A Transcriptional regulat 80.0 2.8 9.7E-05 29.9 4.8 32 2-33 32-63 (202)
180 2vlg_A Sporulation kinase A; h 79.7 1.1 3.8E-05 28.0 2.2 23 22-44 5-27 (111)
181 1p6r_A Penicillinase repressor 79.6 3.3 0.00011 24.5 4.3 39 2-41 27-69 (82)
182 1v4r_A Transcriptional repress 79.6 0.72 2.5E-05 28.7 1.4 37 2-39 39-75 (102)
183 3sxy_A Transcriptional regulat 79.4 4.2 0.00014 28.0 5.3 49 2-51 39-88 (218)
184 3dkw_A DNR protein; CRP-FNR, H 79.4 1.7 5.9E-05 28.5 3.2 40 2-44 182-221 (227)
185 2oz6_A Virulence factor regula 79.0 2.6 8.8E-05 27.3 3.9 37 2-42 168-204 (207)
186 2wv0_A YVOA, HTH-type transcri 78.8 2.3 7.7E-05 30.5 3.9 39 2-43 38-76 (243)
187 1xn7_A Hypothetical protein YH 78.7 1.8 6.1E-05 27.4 3.0 19 66-84 9-27 (78)
188 2qlz_A Transcription factor PF 78.5 1.5 5.1E-05 32.4 3.0 42 2-43 29-76 (232)
189 3i71_A Ethanolamine utilizatio 78.2 2 7E-05 28.0 3.2 28 2-29 22-49 (68)
190 4esb_A Transcriptional regulat 77.9 11 0.00037 24.4 6.8 48 9-56 39-91 (115)
191 2v9v_A Selenocysteine-specific 77.7 11 0.00037 23.9 7.1 54 2-56 21-74 (135)
192 1zyb_A Transcription regulator 77.7 2.4 8.3E-05 28.5 3.6 37 2-42 190-226 (232)
193 3f8b_A Transcriptional regulat 77.4 12 0.0004 24.1 7.5 49 8-56 43-96 (116)
194 1r7j_A Conserved hypothetical 77.3 11 0.00036 23.9 6.4 42 2-47 24-65 (95)
195 3c7j_A Transcriptional regulat 77.1 7.4 0.00025 27.6 6.2 29 2-30 53-81 (237)
196 2y75_A HTH-type transcriptiona 77.1 3.5 0.00012 26.3 4.1 52 2-53 30-84 (129)
197 3elk_A Putative transcriptiona 76.9 4.3 0.00015 26.6 4.6 58 10-68 45-107 (117)
198 2z99_A Putative uncharacterize 76.7 6.6 0.00022 29.6 6.1 82 2-83 34-124 (219)
199 1b4a_A Arginine repressor; hel 76.6 2.4 8.2E-05 29.8 3.5 39 2-45 23-67 (149)
200 2lyc_A Spindle and kinetochore 76.5 0.43 1.5E-05 33.7 -0.4 15 40-54 9-23 (130)
201 3bwg_A Uncharacterized HTH-typ 76.3 3 0.0001 29.8 4.0 38 2-42 33-70 (239)
202 2dql_A PEX protein; circadian 75.6 7.8 0.00027 25.1 5.6 49 8-56 52-106 (115)
203 2o0y_A Transcriptional regulat 75.4 7.4 0.00025 27.9 5.9 50 2-54 42-91 (260)
204 2k02_A Ferrous iron transport 75.0 2.2 7.5E-05 27.8 2.7 21 64-84 7-27 (87)
205 1k78_A Paired box protein PAX5 74.7 7.4 0.00025 25.0 5.2 52 2-56 52-106 (149)
206 3cuq_B Vacuolar protein-sortin 74.5 3.9 0.00013 30.1 4.3 59 10-83 114-178 (218)
207 3iwz_A CAP-like, catabolite ac 73.9 3.2 0.00011 27.3 3.3 28 2-29 191-218 (230)
208 2p8t_A Hypothetical protein PH 73.3 8.3 0.00028 28.5 5.8 53 2-59 34-86 (200)
209 1gks_A Cytochrome C551; haloph 73.2 2.1 7E-05 25.1 2.1 29 24-56 49-77 (78)
210 2p5k_A Arginine repressor; DNA 72.2 7.3 0.00025 21.6 4.2 35 2-40 23-62 (64)
211 3kcc_A Catabolite gene activat 72.1 4.2 0.00014 28.1 3.8 37 2-42 221-257 (260)
212 1sfu_A 34L protein; protein/Z- 72.1 4.5 0.00015 26.3 3.7 29 3-31 34-62 (75)
213 2di3_A Bacterial regulatory pr 72.1 2.8 9.7E-05 29.2 2.9 38 3-40 33-73 (239)
214 1nd9_A Translation initiation 71.8 3.7 0.00013 22.2 2.8 22 1-22 5-26 (49)
215 2do7_A Cullin-4B, CUL-4B; heli 71.3 4.1 0.00014 27.3 3.5 35 8-42 61-95 (101)
216 3dr0_A Cytochrome C6; photosyn 70.0 2.9 9.9E-05 24.0 2.2 17 40-56 71-87 (93)
217 1u78_A TC3 transposase, transp 69.9 8.2 0.00028 23.9 4.4 50 2-56 26-75 (141)
218 3edp_A LIN2111 protein; APC883 69.7 4.9 0.00017 28.7 3.8 39 2-43 37-75 (236)
219 2zxy_A Cytochrome C552, cytoch 69.6 2.6 8.9E-05 24.0 1.9 17 40-56 70-86 (87)
220 1k9u_A Polcalcin PHL P 7; poll 69.6 8.3 0.00028 21.3 4.1 47 40-86 19-67 (78)
221 3dmi_A Cytochrome C6; electron 69.4 2.7 9.3E-05 24.2 2.0 39 10-56 44-82 (88)
222 3cu4_A Cytochrome C family pro 69.1 2.8 9.5E-05 24.3 2.0 17 40-56 67-83 (85)
223 1ayg_A Cytochrome C-552; elect 68.4 3.1 0.00011 24.0 2.1 17 40-56 63-79 (80)
224 2g7u_A Transcriptional regulat 68.1 4.7 0.00016 28.8 3.4 39 2-44 33-71 (257)
225 1c53_A Cytochrome C553; electr 67.6 3 0.0001 24.1 1.9 16 40-55 63-78 (79)
226 1gdv_A Cytochrome C6; RED ALGA 66.9 3.2 0.00011 23.6 2.0 17 40-56 64-80 (85)
227 3ph2_B Cytochrome C6; photosyn 66.6 3.3 0.00011 23.6 2.0 16 41-56 66-81 (86)
228 1t6s_A Conserved hypothetical 66.5 17 0.00059 25.8 6.1 82 2-83 26-118 (162)
229 3r4k_A Transcriptional regulat 66.4 5.4 0.00018 28.7 3.5 43 2-47 25-68 (260)
230 1c75_A Cytochrome C-553; heme, 66.4 3.1 0.00011 23.6 1.8 17 40-56 54-70 (71)
231 1bja_A Transcription regulator 65.9 12 0.00042 24.7 4.9 45 2-50 34-79 (95)
232 3akb_A Putative calcium bindin 65.7 3.2 0.00011 25.3 1.9 48 40-88 114-163 (166)
233 2exv_A Cytochrome C-551; alpha 65.6 3.5 0.00012 23.5 1.9 17 40-56 65-81 (82)
234 1kx2_A Mono-heme C-type cytoch 65.3 2.4 8.3E-05 24.9 1.2 17 40-56 64-80 (81)
235 1f1f_A Cytochrome C6; heme, pr 65.0 3.7 0.00013 23.6 2.0 17 40-56 68-84 (89)
236 3dp5_A OMCF, cytochrome C fami 64.6 3.7 0.00013 25.3 2.0 16 41-56 82-97 (99)
237 1cch_A Cytochrome C551; electr 64.4 4.2 0.00014 23.1 2.1 17 40-56 65-81 (82)
238 1a56_A C-551, ferricytochrome 64.1 3.1 0.00011 24.0 1.5 17 40-56 64-80 (81)
239 1ls9_A Cytochrome C6; omega lo 63.9 3.9 0.00013 23.9 2.0 16 41-56 70-85 (91)
240 1c6r_A Cytochrome C6; electron 63.6 4.1 0.00014 23.5 2.0 16 41-56 68-83 (89)
241 3zq7_A KDP operon transcriptio 63.5 9.5 0.00033 23.3 3.8 35 34-83 22-57 (102)
242 3eet_A Putative GNTR-family tr 63.0 6.3 0.00022 28.9 3.3 39 2-43 57-95 (272)
243 1cyi_A Cytochrome C6, cytochro 62.9 4.2 0.00014 23.6 2.0 16 41-56 67-82 (90)
244 1wve_C 4-cresol dehydrogenase 62.8 4.2 0.00014 23.8 2.0 17 40-56 57-73 (80)
245 2d0s_A Cytochrome C, cytochrom 62.6 3.1 0.0001 23.9 1.3 17 40-56 62-78 (79)
246 2zon_G Cytochrome C551; nitrit 62.3 4.7 0.00016 23.4 2.1 17 40-56 69-85 (87)
247 2k5j_A Uncharacterized protein 62.2 10 0.00035 23.7 3.8 30 37-82 12-41 (80)
248 2xrn_A HTH-type transcriptiona 62.0 5.1 0.00017 28.5 2.6 40 2-44 25-65 (241)
249 3rjp_A COVR; winged helix-turn 61.8 11 0.00039 22.7 3.9 35 34-83 16-51 (96)
250 3mn2_A Probable ARAC family tr 61.6 18 0.00061 22.0 4.8 21 1-21 21-41 (108)
251 3chm_A COP9 signalosome comple 61.4 13 0.00043 26.4 4.6 41 2-42 113-155 (169)
252 1nya_A Calerythrin; EF-hand, m 60.8 12 0.00043 22.9 4.0 48 40-88 118-167 (176)
253 3dpl_C Cullin-5; ubiquitin, NE 60.7 4.1 0.00014 31.6 2.1 41 2-42 342-382 (382)
254 2ce0_A Cytochrome C6; chloropl 60.7 5.4 0.00019 23.7 2.2 17 40-56 78-94 (105)
255 1z05_A Transcriptional regulat 60.6 8.2 0.00028 29.3 3.7 28 2-29 57-84 (429)
256 2w48_A Sorbitol operon regulat 60.4 7.5 0.00026 28.6 3.3 28 2-29 25-52 (315)
257 2hoe_A N-acetylglucosamine kin 60.3 7.5 0.00026 29.0 3.4 28 2-29 37-64 (380)
258 1yx7_A Calsensin, LAN3-6 antig 60.2 5.5 0.00019 22.3 2.1 49 40-88 23-80 (83)
259 1cno_A Cytochrome C552; electr 60.1 5.4 0.00018 23.3 2.1 16 41-56 67-82 (87)
260 3l9f_A Putative uncharacterize 59.7 21 0.00072 25.6 5.6 48 9-56 68-120 (204)
261 1tc3_C Protein (TC3 transposas 59.6 4.2 0.00014 20.5 1.3 25 2-26 25-49 (51)
262 1cc5_A Cytochrome C5; electron 59.4 4.6 0.00016 24.2 1.7 16 40-55 67-82 (83)
263 1q80_A SCP, sarcoplasmic calci 58.7 9.3 0.00032 23.6 3.1 47 40-87 110-158 (174)
264 2l4d_A SCO1/SENC family protei 58.5 5.9 0.0002 23.6 2.1 16 41-56 81-96 (110)
265 1w2l_A Cytochrome oxidase subu 58.5 5.5 0.00019 23.3 1.9 15 41-55 83-97 (99)
266 1x93_A Hypothetical protein HP 57.8 10 0.00034 23.9 3.1 28 39-70 6-33 (55)
267 1o57_A PUR operon repressor; p 57.4 46 0.0016 24.9 7.3 51 1-51 26-85 (291)
268 1qx2_A Vitamin D-dependent cal 57.3 9.9 0.00034 20.6 2.8 46 40-85 23-73 (76)
269 3ez2_A Plasmid partition prote 57.1 31 0.0011 25.6 6.2 76 2-77 44-123 (398)
270 2ia2_A Putative transcriptiona 57.0 8.2 0.00028 27.8 3.0 39 2-44 40-78 (265)
271 2xzm_8 RPS25E,; ribosome, tran 56.7 17 0.00057 26.4 4.6 40 3-42 68-107 (143)
272 1z6r_A MLC protein; transcript 56.5 8.3 0.00028 28.8 3.0 28 2-29 34-61 (406)
273 1o5l_A Transcriptional regulat 56.5 2.3 7.9E-05 28.2 0.0 37 2-42 168-204 (213)
274 1ylf_A RRF2 family protein; st 56.2 16 0.00054 24.2 4.1 38 2-40 34-71 (149)
275 1ldj_A Cullin homolog 1, CUL-1 55.9 8.4 0.00029 32.5 3.3 41 2-42 720-760 (760)
276 2jt1_A PEFI protein; solution 55.7 9.4 0.00032 23.9 2.8 13 72-84 23-35 (77)
277 2zzs_A Cytochrome C554; C-type 55.7 7 0.00024 23.4 2.1 17 40-56 86-102 (103)
278 2dk5_A DNA-directed RNA polyme 55.6 16 0.00055 23.2 4.0 32 2-33 40-71 (91)
279 3t5x_A PCI domain-containing p 55.6 11 0.00038 26.8 3.5 42 2-43 145-192 (203)
280 1r8d_A Transcription activator 55.4 36 0.0012 21.4 6.6 46 2-51 6-51 (109)
281 3mq0_A Transcriptional repress 55.1 7.1 0.00024 28.5 2.4 43 1-46 48-90 (275)
282 3li6_A Calcium-binding protein 54.8 16 0.00054 19.3 3.3 46 40-85 16-64 (66)
283 3t8r_A Staphylococcus aureus C 54.1 15 0.00051 24.5 3.7 39 2-40 32-70 (143)
284 2vz4_A Tipal, HTH-type transcr 54.1 38 0.0013 21.3 6.2 46 2-51 5-50 (108)
285 2hgc_A YJCQ protein; SR346, st 54.1 17 0.00057 24.6 4.0 47 5-56 23-76 (102)
286 3cuq_B Vacuolar protein-sortin 53.8 17 0.0006 26.6 4.4 33 2-36 172-204 (218)
287 2z9m_A Response regulator YYCF 53.6 12 0.00041 23.8 3.1 34 34-82 30-64 (120)
288 1lva_A Selenocysteine-specific 53.6 49 0.0017 23.9 6.7 54 2-56 21-74 (258)
289 2ra5_A Putative transcriptiona 52.7 3.3 0.00011 29.8 0.3 37 2-39 44-80 (247)
290 2k27_A Paired box protein PAX- 52.7 9.6 0.00033 24.8 2.5 64 2-68 45-111 (159)
291 1tiz_A Calmodulin-related prot 52.6 12 0.0004 19.7 2.5 46 40-85 17-65 (67)
292 1mz4_A Cytochrome C550; PSII a 52.3 8.1 0.00028 24.6 2.1 16 41-56 107-122 (137)
293 2o03_A Probable zinc uptake re 52.1 30 0.001 22.3 4.9 39 2-40 30-73 (131)
294 3f1p_B ARYL hydrocarbon recept 51.6 7.6 0.00026 22.2 1.7 18 27-44 13-30 (121)
295 2zxj_A Transcriptional regulat 51.2 12 0.00042 24.7 2.9 34 35-83 31-65 (120)
296 2pmu_A Response regulator PHOP 51.2 17 0.00057 22.7 3.4 34 35-83 29-63 (110)
297 3ll8_B Calcineurin subunit B t 51.2 18 0.00061 21.7 3.5 47 40-86 91-145 (155)
298 1f1c_A Cytochrome C549; dimeri 51.1 9 0.00031 23.6 2.1 17 40-56 104-120 (129)
299 2ciw_A Chloroperoxidase; oxido 50.9 3.9 0.00013 32.2 0.5 32 61-92 33-67 (299)
300 1gxq_A PHOB, phosphate regulon 50.8 13 0.00044 23.0 2.8 34 35-83 26-60 (106)
301 3mcr_A NADH dehydrogenase, sub 50.3 17 0.00059 27.3 3.9 45 12-56 77-128 (213)
302 2k4b_A Transcriptional regulat 50.1 32 0.0011 22.0 4.7 39 2-41 53-95 (99)
303 1opc_A OMPR, OMPRC; transcript 49.9 18 0.00063 22.3 3.5 34 35-83 26-60 (110)
304 2k4j_A Putative transcriptiona 49.9 19 0.00066 23.0 3.6 34 35-83 36-70 (115)
305 3a0s_A Sensor protein; PAS-fol 49.9 12 0.0004 19.0 2.1 14 31-44 7-20 (96)
306 2rnn_A E3 SUMO-protein ligase 49.9 29 0.00098 24.1 4.7 47 2-57 46-96 (114)
307 3cuq_C Vacuolar protein-sortin 49.7 71 0.0024 23.1 7.3 61 9-82 68-133 (176)
308 3cuq_A Vacuolar-sorting protei 49.4 18 0.0006 27.5 3.9 64 9-83 114-178 (234)
309 3cp5_A Cytochrome C; electron 49.0 10 0.00034 23.3 2.1 17 40-56 104-120 (124)
310 3u5c_Z RP45, S31, YS23, 40S ri 48.7 19 0.00066 24.8 3.7 40 3-42 64-103 (108)
311 2fe3_A Peroxide operon regulat 48.7 31 0.0011 22.7 4.6 40 2-41 41-85 (145)
312 3v4g_A Arginine repressor; vib 48.6 15 0.0005 27.0 3.2 34 9-46 61-97 (180)
313 2jzy_A Transcriptional regulat 48.6 15 0.0005 23.3 2.9 35 34-83 22-57 (112)
314 2hwv_A DNA-binding response re 48.5 23 0.00079 22.8 3.9 35 34-83 37-72 (121)
315 2qc0_A Uncharacterized protein 48.4 37 0.0013 25.9 5.6 47 2-49 315-361 (373)
316 2hqn_A Putative transcriptiona 48.3 17 0.00057 22.5 3.1 34 35-83 24-58 (109)
317 3ez9_A Para; DNA binding, wing 48.2 20 0.00068 26.8 4.0 75 2-76 47-125 (403)
318 3f1p_A Endothelial PAS domain- 47.6 10 0.00035 21.4 1.8 16 29-44 12-27 (117)
319 3olo_A Two-component sensor hi 47.6 22 0.00074 19.4 3.2 16 29-44 26-41 (118)
320 1g8i_A Frequenin, neuronal cal 47.1 42 0.0014 21.0 4.8 71 3-83 15-89 (190)
321 2k1o_A Putative; repressor, tr 46.9 16 0.00054 23.6 2.8 27 39-69 20-46 (66)
322 1a62_A RHO; transcription term 46.2 21 0.00071 24.4 3.5 32 2-33 15-56 (130)
323 1ywy_A Hypothetical protein PA 46.0 12 0.00041 24.7 2.1 20 31-50 40-59 (74)
324 1rwy_A Parvalbumin alpha; EF-h 45.9 18 0.00061 21.0 2.8 44 40-83 57-106 (109)
325 3zyy_X Iron-sulfur cluster bin 45.9 6.6 0.00023 33.5 1.1 22 13-38 447-468 (631)
326 2zhg_A Redox-sensitive transcr 45.8 68 0.0023 21.8 6.3 44 2-50 15-58 (154)
327 2opo_A Polcalcin CHE A 3; calc 45.7 14 0.00047 20.8 2.2 47 40-86 27-75 (86)
328 3fc7_A HTR-like protein, senso 45.7 15 0.00051 20.4 2.3 14 31-44 34-47 (125)
329 3l09_A Putative transcriptiona 45.5 56 0.0019 24.8 6.2 48 3-50 50-97 (266)
330 1q06_A Transcriptional regulat 45.5 63 0.0021 21.3 6.6 46 2-51 4-49 (135)
331 1i4j_A 50S ribosomal protein L 45.3 8.5 0.00029 25.6 1.4 48 35-82 6-53 (110)
332 1h1o_A Cytochrome C-552; elect 44.8 12 0.00042 24.3 2.1 15 41-55 168-182 (183)
333 2pmy_A RAS and EF-hand domain- 44.7 12 0.00041 21.9 1.9 45 40-85 43-89 (91)
334 2vxz_A Pyrsv_GP04; viral prote 44.1 77 0.0026 23.5 6.5 54 3-56 29-83 (165)
335 3r8s_S 50S ribosomal protein L 43.7 6.6 0.00023 26.2 0.7 48 35-82 6-53 (110)
336 2e1n_A PEX, period extender; c 43.4 27 0.00094 23.6 3.8 49 8-56 64-118 (138)
337 4f3l_A Mclock, circadian locom 43.3 13 0.00046 27.5 2.4 22 22-43 92-113 (361)
338 1u5t_A Appears to BE functiona 43.2 12 0.0004 28.3 2.1 70 2-83 117-191 (233)
339 3o0r_C Nitric oxide reductase 43.1 14 0.00047 23.6 2.1 16 41-56 117-132 (146)
340 1c52_A Cytochrome-C552; electr 43.1 13 0.00044 23.7 2.0 17 40-56 74-90 (131)
341 2obp_A Putative DNA-binding pr 42.3 69 0.0024 20.9 5.7 50 2-52 40-91 (96)
342 2ftc_M Mitochondrial ribosomal 42.1 12 0.00042 24.8 1.8 48 35-82 2-49 (110)
343 3khe_A Calmodulin-like domain 42.1 7.8 0.00027 24.4 0.8 13 71-83 137-149 (191)
344 1xd7_A YWNA; structural genomi 41.7 25 0.00085 23.1 3.2 38 2-40 27-64 (145)
345 3lwf_A LIN1550 protein, putati 41.5 35 0.0012 23.5 4.1 39 2-40 48-86 (159)
346 1qbj_A Protein (double-strande 41.3 18 0.00061 22.7 2.4 31 39-84 5-38 (81)
347 1qn2_A Cytochrome CH; electron 41.2 17 0.00058 21.7 2.2 16 41-56 84-99 (100)
348 4dj3_A Period circadian protei 41.2 8.4 0.00029 29.2 0.9 50 22-76 32-84 (317)
349 3i9v_2 NADH-quinone oxidoreduc 41.1 9.5 0.00032 27.3 1.2 58 4-74 14-78 (181)
350 1uhk_A Aequorin 2, aequorin; E 41.1 37 0.0013 21.1 3.8 48 40-87 125-175 (191)
351 1stz_A Heat-inducible transcri 40.8 22 0.00076 27.3 3.3 28 2-29 40-69 (338)
352 1e29_A Cytochrome C549; electr 40.7 16 0.00053 23.9 2.1 17 40-56 106-122 (135)
353 2rem_A Disulfide oxidoreductas 40.7 41 0.0014 21.7 4.2 53 2-56 115-185 (193)
354 2gpe_A Bifunctional protein PU 40.5 43 0.0015 18.4 3.7 29 39-83 8-36 (52)
355 2qac_A Myosin A tail domain in 40.3 25 0.00086 21.1 2.9 13 69-81 130-142 (146)
356 3iz6_V 40S ribosomal protein S 40.3 17 0.00059 25.0 2.4 39 3-41 65-103 (108)
357 1ccr_A Cytochrome C; electron 40.2 17 0.00057 22.1 2.1 16 41-56 95-110 (112)
358 3luq_A Sensor protein; PAS, hi 39.8 32 0.0011 18.3 3.0 19 26-44 13-31 (114)
359 3qph_A TRMB, A global transcri 39.7 8.7 0.0003 29.4 0.8 45 2-46 36-80 (342)
360 2hye_C Cullin-4A, CUL-4A; beta 39.3 18 0.00063 30.4 2.8 35 8-42 725-759 (759)
361 1i54_A Cytochrome C; zinc-porp 39.3 19 0.00066 21.3 2.2 17 40-56 84-101 (103)
362 2w9k_A Cytochrome C, cytochrom 39.0 16 0.00056 22.3 1.9 16 41-56 97-112 (114)
363 1m70_A Cytochrome C4; electron 38.9 16 0.00054 23.9 1.9 16 40-55 173-188 (190)
364 2ct9_A Calcium-binding protein 38.8 49 0.0017 21.5 4.3 46 40-85 129-182 (208)
365 2jnf_A Troponin C; stretch act 38.3 27 0.00093 21.1 2.8 45 40-84 107-154 (158)
366 2joj_A Centrin protein; N-term 38.1 27 0.00093 18.9 2.6 47 40-86 23-72 (77)
367 1ycc_A Cytochrome C; electron 38.1 20 0.00069 21.5 2.2 17 40-56 89-106 (108)
368 2xig_A Ferric uptake regulatio 38.0 67 0.0023 21.3 5.0 33 9-41 58-90 (150)
369 2b1u_A Calmodulin-like protein 38.0 14 0.00047 19.8 1.3 44 40-83 22-68 (71)
370 3vrd_A FCCA subunit, flavocyto 37.9 13 0.00046 25.0 1.5 16 41-56 158-173 (174)
371 3gpv_A Transcriptional regulat 37.8 90 0.0031 20.9 6.7 46 2-51 20-65 (148)
372 1w5c_T Cytochrome C-550; photo 37.7 18 0.00062 23.8 2.1 17 40-56 132-148 (163)
373 3hh0_A Transcriptional regulat 37.6 91 0.0031 20.9 6.5 46 2-51 8-53 (146)
374 1fpw_A Yeast frequenin, calciu 37.6 63 0.0022 20.1 4.6 41 3-53 15-55 (190)
375 1juo_A Sorcin; calcium-binding 37.3 35 0.0012 22.0 3.4 44 40-83 119-163 (198)
376 2xub_A DNA-directed RNA polyme 37.2 1E+02 0.0035 24.7 6.8 83 2-84 37-126 (534)
377 1mzb_A Ferric uptake regulatio 37.0 53 0.0018 21.3 4.3 40 2-41 38-82 (136)
378 3dgp_A RNA polymerase II trans 36.9 23 0.00078 23.0 2.4 25 32-56 51-75 (80)
379 1co6_A Protein (cytochrome C2) 36.8 20 0.00069 21.6 2.0 15 42-56 86-100 (107)
380 1w7p_D VPS36P, YLR417W; ESCRT- 36.8 37 0.0013 28.8 4.2 38 2-41 512-558 (566)
381 2kdk_A ARYL hydrocarbon recept 36.7 20 0.00067 20.1 1.9 16 29-44 16-31 (121)
382 4f21_A Carboxylesterase/phosph 36.7 19 0.00064 25.3 2.1 37 18-56 205-243 (246)
383 3fg8_A Uncharacterized protein 36.6 21 0.0007 20.7 2.0 15 30-44 26-40 (118)
384 2cqq_A RSGI RUH-037, DNAJ homo 36.5 40 0.0014 20.9 3.4 26 2-27 35-60 (72)
385 3cs1_A Flagellar calcium-bindi 36.5 59 0.002 21.6 4.5 44 40-83 146-193 (219)
386 2lnb_A Z-DNA-binding protein 1 36.5 34 0.0012 22.7 3.3 28 2-29 38-65 (80)
387 3gp4_A Transcriptional regulat 36.4 78 0.0027 21.2 5.2 46 2-51 6-51 (142)
388 1bu3_A Calcium-binding protein 36.3 23 0.0008 20.6 2.2 43 40-82 58-106 (109)
389 3k69_A Putative transcription 36.3 31 0.0011 23.6 3.2 39 2-40 32-70 (162)
390 2zp2_A Kinase A inhibitor; KIP 36.2 15 0.00053 26.0 1.6 20 1-20 17-36 (141)
391 3to7_A Histone acetyltransfera 36.2 34 0.0012 27.0 3.7 45 1-51 211-256 (276)
392 3zbh_A ESXA; unknown function, 36.1 23 0.00077 20.9 2.2 19 38-56 6-24 (99)
393 2lfc_A Fumarate reductase, fla 36.0 24 0.00083 23.7 2.5 26 1-26 98-126 (160)
394 2r78_A Sensor protein; sensory 35.9 36 0.0012 19.6 3.0 19 26-44 21-39 (117)
395 1qys_A TOP7; alpha-beta, novel 35.9 14 0.00048 25.5 1.3 27 31-57 9-44 (106)
396 3mjq_A Uncharacterized protein 35.7 22 0.00076 19.5 2.0 15 30-44 13-27 (126)
397 1gjy_A Sorcin, CP-22, V19; cal 35.7 32 0.0011 21.4 2.9 44 40-83 88-132 (167)
398 1a4p_A S100A10; S100 family, E 35.7 34 0.0012 20.7 3.0 52 29-83 15-75 (96)
399 2jml_A DNA binding domain/tran 35.5 70 0.0024 19.0 5.4 45 2-50 9-54 (81)
400 3gbg_A TCP pilus virulence reg 35.5 40 0.0014 23.2 3.6 57 1-84 188-244 (276)
401 3u1d_A Uncharacterized protein 35.4 1.1E+02 0.0037 21.5 6.0 51 2-52 49-108 (151)
402 2d8n_A Recoverin; structural g 35.4 65 0.0022 20.6 4.5 72 3-84 23-98 (207)
403 3bwl_A Sensor protein; structu 35.4 41 0.0014 18.8 3.2 19 26-44 27-45 (126)
404 1psr_A Psoriasin, S100A7; EF-h 35.4 53 0.0018 19.9 3.9 51 29-82 16-77 (100)
405 3b33_A Sensor protein; structu 35.0 23 0.0008 19.7 2.0 22 23-44 14-35 (115)
406 2c1d_B SOXX; sulfur oxidation, 34.9 19 0.00066 22.9 1.8 17 40-56 119-135 (137)
407 2bec_A Calcineurin B homologou 34.8 38 0.0013 21.7 3.3 47 40-86 130-184 (202)
408 2zfw_A PEX; five alpha-helices 34.8 18 0.00063 24.9 1.8 48 8-55 74-127 (148)
409 1ggw_A Protein (CDC4P); light 34.5 29 0.00099 20.6 2.5 12 70-81 124-135 (140)
410 3sqn_A Conserved domain protei 34.5 87 0.003 24.8 5.9 80 1-82 35-117 (485)
411 1h32_B Cytochrome C, SOXX; ele 34.5 15 0.00052 23.3 1.3 17 40-56 120-136 (138)
412 2gc4_D Cytochrome C-L; electro 34.2 21 0.00072 23.1 2.0 16 41-56 108-123 (147)
413 1qv0_A Obelin, OBL; photoprote 34.0 50 0.0017 20.6 3.7 48 40-87 129-179 (195)
414 2zvf_A Alanyl-tRNA synthetase; 34.0 14 0.00048 24.7 1.1 55 2-56 17-97 (171)
415 2gj3_A Nitrogen fixation regul 34.0 41 0.0014 19.1 3.0 21 24-44 13-33 (120)
416 2kz6_A Uncharacterized protein 33.9 18 0.0006 23.8 1.5 16 30-45 7-22 (102)
417 1u5t_B Defective in vacuolar p 33.4 24 0.00082 25.0 2.3 30 3-34 124-154 (169)
418 3i5g_C Myosin catalytic light 33.4 37 0.0013 22.0 3.0 42 40-81 101-147 (159)
419 1cb1_A Calbindin D9K; calcium- 33.3 28 0.00095 18.8 2.1 46 40-85 25-75 (78)
420 3lyx_A Sensory BOX/ggdef domai 33.2 32 0.0011 18.0 2.3 19 26-44 17-35 (124)
421 1yj7_A ESCJ; mixed alpha/beta, 32.7 1.3E+02 0.0044 21.2 6.9 49 9-57 8-58 (171)
422 2lmt_A Calmodulin-related prot 32.7 55 0.0019 20.2 3.7 42 40-81 99-143 (148)
423 3t76_A VANU, transcriptional r 32.5 71 0.0024 19.7 4.2 37 2-55 41-77 (88)
424 2ccm_A Calexcitin; EF hand, ca 32.4 55 0.0019 20.5 3.6 47 40-86 29-93 (191)
425 3dom_A RNA polymerase II trans 32.4 30 0.001 23.8 2.5 24 33-56 80-103 (108)
426 3fwb_A Cell division control p 32.1 39 0.0013 20.3 2.8 15 70-84 109-123 (161)
427 1bm9_A RTP, TER, replication t 32.1 1.2E+02 0.0042 20.8 6.3 49 7-55 49-106 (122)
428 2zoo_A Probable nitrite reduct 32.0 38 0.0013 25.7 3.3 16 41-56 409-424 (442)
429 3q9v_A DNA-binding response re 32.0 25 0.00084 23.3 2.0 33 35-82 55-88 (133)
430 1k94_A Grancalcin; penta-EF-ha 31.9 33 0.0011 21.2 2.5 15 69-83 116-130 (165)
431 3l4g_A Phenylalanyl-tRNA synth 31.8 9.8 0.00033 31.7 0.0 44 2-45 24-67 (508)
432 3a9f_A Cytochrome C; alpha hel 31.8 27 0.00091 22.5 2.1 18 39-56 74-91 (92)
433 2f33_A Calbindin; EF-hand, Ca2 31.7 40 0.0014 22.1 3.0 45 40-84 207-259 (263)
434 3mwm_A ZUR, putative metal upt 31.7 1.1E+02 0.0037 20.0 5.2 33 9-41 45-77 (139)
435 3gby_A Uncharacterized protein 31.7 29 0.00098 20.9 2.1 10 30-39 103-112 (128)
436 1fse_A GERE; helix-turn-helix 31.4 50 0.0017 18.2 3.0 22 2-23 30-51 (74)
437 1hro_A Cytochrome C2; electron 31.4 22 0.00074 21.4 1.5 18 38-55 86-104 (106)
438 1iru_G 20S proteasome; cell cy 31.3 81 0.0028 22.5 4.8 48 9-56 183-242 (254)
439 2blf_B SORB, sulfite\:cytochro 31.2 29 0.00099 20.9 2.1 17 40-56 64-80 (81)
440 2cy5_A Epidermal growth factor 31.1 34 0.0012 24.1 2.7 34 11-44 29-65 (140)
441 2zjr_P 50S ribosomal protein L 30.9 15 0.00051 25.6 0.8 49 34-82 26-74 (134)
442 2kn2_A Calmodulin; S MAPK phos 30.9 60 0.0021 18.2 3.4 48 40-87 25-75 (92)
443 3no7_A PARB, putative plasmid 30.9 48 0.0016 21.9 3.2 35 38-83 13-47 (80)
444 2qlz_A Transcription factor PF 30.6 65 0.0022 23.5 4.3 41 2-45 182-222 (232)
445 4a0z_A Transcription factor FA 30.6 40 0.0014 23.8 3.1 21 64-84 17-37 (190)
446 1ryp_E 20S proteasome; multica 30.4 54 0.0019 23.0 3.7 48 9-56 182-238 (242)
447 1wdc_C Scallop myosin; calcium 30.4 43 0.0015 20.2 2.8 13 71-83 136-148 (156)
448 2kfs_A Conserved hypothetical 30.4 39 0.0013 24.2 3.0 39 2-46 35-73 (148)
449 2bl0_B Myosin regulatory light 30.3 35 0.0012 20.1 2.3 45 40-84 92-139 (145)
450 3k6e_A CBS domain protein; str 30.3 49 0.0017 21.4 3.2 19 27-45 116-135 (156)
451 2w57_A Ferric uptake regulatio 30.2 83 0.0028 20.8 4.4 33 9-41 49-81 (150)
452 3pm8_A PFCDPK2, calcium-depend 30.0 38 0.0013 22.3 2.7 12 70-81 180-191 (197)
453 2hpk_A Photoprotein berovin; s 29.7 24 0.00081 22.9 1.6 47 40-87 144-192 (208)
454 3qt5_A Mevalonate diphosphate 29.7 1.7E+02 0.0058 21.8 6.5 45 12-56 266-312 (332)
455 1s6c_A KV4 potassium channel-i 29.6 1E+02 0.0035 19.1 7.3 40 2-51 7-46 (183)
456 2b5a_A C.BCLI; helix-turn-heli 29.6 69 0.0024 17.5 3.4 13 41-53 50-62 (77)
457 1avs_A Troponin C; muscle cont 29.4 40 0.0014 19.1 2.4 47 40-86 36-85 (90)
458 1k8u_A S100A6, calcyclin, CACY 29.3 37 0.0012 18.9 2.2 46 40-85 28-79 (90)
459 2vv6_A FIXL, sensor protein FI 29.3 38 0.0013 19.2 2.3 14 31-44 8-21 (119)
460 4hi4_A Aerotaxis transducer AE 29.3 36 0.0012 19.8 2.3 28 17-45 5-34 (121)
461 3bhp_A UPF0291 protein YNZC; N 29.3 28 0.00097 21.8 1.8 30 11-50 2-31 (60)
462 1y7y_A C.AHDI; helix-turn-heli 29.3 56 0.0019 17.7 3.0 12 41-52 53-64 (74)
463 2jvd_A UPF0291 protein YNZC; s 29.2 29 0.00099 21.4 1.8 20 11-30 2-21 (54)
464 3mml_B Allophanate hydrolase s 29.2 21 0.00073 26.6 1.5 20 1-20 116-135 (228)
465 3ox6_A Calcium-binding protein 28.7 45 0.0015 19.7 2.6 45 40-84 104-152 (153)
466 2krc_A DNA-directed RNA polyme 28.7 16 0.00055 24.4 0.6 37 2-44 37-73 (99)
467 2kz2_A Calmodulin, CAM; TR2C, 28.6 54 0.0018 19.3 3.0 43 40-82 45-90 (94)
468 4a0z_A Transcription factor FA 28.6 36 0.0012 24.1 2.5 25 2-26 30-54 (190)
469 2k5e_A Uncharacterized protein 28.6 42 0.0014 20.6 2.5 25 1-25 43-67 (73)
470 3o18_A C-phycocyanin alpha sub 28.5 15 0.00052 25.9 0.5 22 33-56 13-34 (162)
471 1p94_A Plasmid partition prote 28.5 80 0.0027 19.9 3.9 28 39-82 39-66 (76)
472 2hps_A Coelenterazine-binding 28.4 72 0.0025 19.8 3.7 48 40-87 118-168 (186)
473 2qkp_A Uncharacterized protein 28.4 26 0.00088 22.9 1.6 14 31-44 34-47 (151)
474 2k53_A A3DK08 protein; NESG, C 28.3 40 0.0014 20.9 2.4 24 1-24 41-64 (76)
475 2phc_B Uncharacterized protein 28.3 22 0.00077 26.3 1.4 20 1-20 100-119 (225)
476 2xi8_A Putative transcription 28.2 71 0.0024 16.8 3.5 36 2-53 18-53 (66)
477 2vml_A Phycocyanin alpha chain 28.2 16 0.00053 25.8 0.5 22 33-56 13-34 (162)
478 1ucr_A Protein DSVD; dissimila 28.1 55 0.0019 21.6 3.2 27 2-28 25-52 (78)
479 3iz5_K 60S ribosomal protein L 28.0 30 0.001 26.0 2.1 21 1-21 143-163 (206)
480 3q9s_A DNA-binding response re 28.0 1.2E+02 0.0039 20.7 5.0 57 10-81 139-209 (249)
481 3l0f_B C-phycocyanin beta chai 27.9 15 0.0005 26.4 0.4 22 33-56 13-34 (172)
482 2kvc_A Putative uncharacterize 27.9 22 0.00075 24.3 1.2 59 15-91 7-74 (103)
483 2pi2_A Replication protein A 3 27.7 13 0.00044 27.5 0.0 34 2-35 228-262 (270)
484 2c8s_A Cytochrome C-L; HAEM, h 27.6 31 0.0011 23.4 2.0 31 24-57 102-132 (172)
485 1lfp_A Hypothetical protein AQ 27.6 30 0.001 26.5 2.0 57 30-87 163-222 (249)
486 1t3u_A Conserved hypothetical 27.5 73 0.0025 20.1 3.6 29 28-56 7-38 (104)
487 3omt_A Uncharacterized protein 27.4 74 0.0025 17.6 3.3 37 2-54 25-61 (73)
488 3s5o_A 4-hydroxy-2-oxoglutarat 27.3 53 0.0018 24.5 3.4 47 9-56 31-79 (307)
489 3mqq_A Transcriptional regulat 27.3 31 0.0011 19.4 1.7 14 31-44 17-30 (120)
490 1m45_A MLC1P, myosin light cha 27.2 50 0.0017 19.6 2.7 44 40-83 99-145 (148)
491 4f3l_B BMAL1B; BHLH, PAS, circ 27.2 39 0.0013 25.5 2.6 23 22-44 92-115 (387)
492 1ryl_A Hypothetical protein YF 27.1 52 0.0018 23.0 3.1 25 37-61 83-108 (167)
493 4a17_I RPL13A, 60S ribosomal p 27.0 30 0.001 25.7 1.9 22 1-22 137-158 (198)
494 4ds7_A Calmodulin, CAM; protei 27.0 64 0.0022 18.9 3.1 45 40-84 100-146 (147)
495 1kn1_B Allophycocyanin; helix- 26.9 17 0.00058 25.5 0.5 22 33-56 13-34 (161)
496 1jba_A GCAP-2, protein (guanyl 26.8 69 0.0024 20.5 3.5 46 40-85 111-176 (204)
497 1s1e_A KV channel interacting 26.7 1E+02 0.0035 20.7 4.4 46 40-85 141-201 (224)
498 3dd4_A KV channel-interacting 26.6 53 0.0018 22.1 3.0 46 40-85 154-214 (229)
499 2w0n_A Sensor protein DCUS; si 26.6 20 0.00069 19.4 0.7 16 29-44 28-43 (118)
500 1yht_A DSPB; beta barrel, hydr 26.6 1.3E+02 0.0045 23.1 5.5 21 40-60 91-111 (367)
No 1
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.94 E-value=4.1e-28 Score=160.89 Aligned_cols=48 Identities=54% Similarity=0.832 Sum_probs=46.3
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNS 48 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~ 48 (96)
|||||++|||+||+||+||++|+++|+|||||||||||||||++||++
T Consensus 24 LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~eE~~a 71 (72)
T 1wi9_A 24 LEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPSGPSS 71 (72)
T ss_dssp HHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCSSCCC
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHHHhhc
Confidence 589999999999999999999999999999999999999999999864
No 2
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.46 E-value=0.0006 Score=41.18 Aligned_cols=55 Identities=11% Similarity=0.225 Sum_probs=48.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++...+-..|+.|++.|-+...- |.|.+++++|++-...+..++...
T Consensus 34 ~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~~~~ 91 (100)
T 1ub9_A 34 SQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSL 91 (100)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999776 677889999999888887777665
No 3
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.44 E-value=0.00062 Score=41.19 Aligned_cols=55 Identities=13% Similarity=0.277 Sum_probs=50.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..+|++...+-..++.|++.|-+.-.-|.|.++.+++++....+..++.+.
T Consensus 42 ~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l~~~ 96 (99)
T 3cuo_A 42 GELTRITGLSASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATLKNV 96 (99)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHHh
Confidence 5899999999888889999999999999988888889999999999999988764
No 4
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=97.23 E-value=0.00092 Score=42.91 Aligned_cols=60 Identities=15% Similarity=0.258 Sum_probs=52.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhchhch
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGREEL 61 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rgr~~~ 61 (96)
.|||..+|++...+-..++.|++.|-+.-.-|.|.+|.+++++.+..+..++.+...++|
T Consensus 42 ~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~l~~~~~~~~ 101 (108)
T 2kko_A 42 EAIATATGMNLTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFALVQVVADEHL 101 (108)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHHHhhHHh
Confidence 589999999999888999999999999988888888889999999999999988754443
No 5
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=97.10 E-value=0.0023 Score=39.52 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=49.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..+|++...+-..++.|++.|-+.-.-+.|..|.+++++.+..+..++..-
T Consensus 40 ~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l~~~ 94 (98)
T 3jth_A 40 GELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLLHSL 94 (98)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999988888889999999999998887653
No 6
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=97.03 E-value=0.0027 Score=43.82 Aligned_cols=68 Identities=18% Similarity=0.252 Sum_probs=59.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGREELNSVATFIK 69 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~ 69 (96)
.+||..+|++...|-..++.|++.|-|...-|.|.+|.+++++.+..+..++...-...+..+..++.
T Consensus 75 ~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~~~l~~~l~~~~~~~l~~l~~~l~ 142 (151)
T 3f6v_A 75 NNLAAHFPASRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGLAQLRALFDSFWIDELDRLVADAT 142 (151)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHHSCHHHHHHHHHCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999988899999999999999999999999999999999999988776666666655543
No 7
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.93 E-value=0.0028 Score=40.94 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=51.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..+|++...+-..++.|++.|-+...-+.|.+|.+++++.+..+..++...
T Consensus 35 ~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~~~~ 89 (118)
T 3f6o_A 35 SELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWLAEQ 89 (118)
T ss_dssp HHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999999989999999999999999888876
No 8
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.91 E-value=0.0036 Score=38.90 Aligned_cols=55 Identities=22% Similarity=0.211 Sum_probs=48.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..+|++...+-..++.|++.|-+.-.-+.|.+|++++++.+..+..++...
T Consensus 38 ~ela~~l~is~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~~~~~~~~~~~ 92 (114)
T 2oqg_A 38 SSLATRLPVSRQAIAKHLNALQACGLVESVKVGREIRYRALGAELNKTARTLERI 92 (114)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHHHHHHHHHHHH
Confidence 5899999999999999999999999999888888889999999988887776653
No 9
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.83 E-value=0.0043 Score=39.25 Aligned_cols=55 Identities=4% Similarity=0.076 Sum_probs=48.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..+|++...+-..|+.|++.|-+...-+.|..|.+++++.+..+...+...
T Consensus 43 ~ela~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~~ 97 (106)
T 1r1u_A 43 GHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHH 97 (106)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHHH
Confidence 5899999999888889999999999999888877778889999998888877654
No 10
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.78 E-value=0.0035 Score=39.05 Aligned_cols=55 Identities=7% Similarity=0.146 Sum_probs=50.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..+|++...+-..++.|++.|-+.-.-+.|..|..++++.+..+..++.+-
T Consensus 40 ~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~l~~~ 94 (102)
T 3pqk_A 40 GELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNALYTI 94 (102)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHHHHHH
Confidence 5899999999999999999999999999988888899999999999888887654
No 11
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=96.75 E-value=0.0064 Score=37.39 Aligned_cols=51 Identities=18% Similarity=0.163 Sum_probs=44.6
Q ss_pred hhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHh
Q psy11008 5 AALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 5 Aa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
|..++++...+-..|+.|++.|-+.=..|.|.+++++|++-...+......
T Consensus 33 a~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~~~ 83 (99)
T 1tbx_A 33 NAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLKTA 83 (99)
T ss_dssp HTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999877666555443
No 12
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.67 E-value=0.0051 Score=40.13 Aligned_cols=55 Identities=11% Similarity=0.179 Sum_probs=46.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..+|++...+-..|+.|++.|-+...-+.|..|.+++++.+..++.++.+.
T Consensus 60 ~eLa~~l~is~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~~~~l~~~ 114 (122)
T 1u2w_A 60 CDIANILGVTIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEHIRQIMMIALAH 114 (122)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEC----CCEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHHHHHHHHHHHHH
Confidence 5899999999988889999999999998877777789999999999999888765
No 13
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=96.66 E-value=0.0063 Score=40.33 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=44.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccE---EeeCC--Cc----eEEEcH---HHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTG---VIDDR--GK----FIYISQ---EELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltG---ViDDR--GK----fIyIs~---eEl~~Va~fI~~r 56 (96)
.|||..+|++...|-.||+.|++.|.|.+ ++|.+ |. ||.|+- ..++.+++.+.+.
T Consensus 26 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~~~~~~~~~~l~~~ 92 (152)
T 2cg4_A 26 AELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALAKLESL 92 (152)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEESSGGGHHHHHHHHHTC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEECCCCCHHHHHHHHhCC
Confidence 58999999999999999999999999987 45643 43 677762 3588899988876
No 14
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=96.60 E-value=0.004 Score=40.93 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=45.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccE---EeeCC--Cc----eEEEc----HHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTG---VIDDR--GK----FIYIS----QEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltG---ViDDR--GK----fIyIs----~eEl~~Va~fI~~r 56 (96)
.|||..+|++...+-.||+.|++.|-|.+ ++|.+ |. |+.++ ++.++.+++.+.+.
T Consensus 21 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~~~~~~l~~~ 88 (150)
T 2pn6_A 21 DEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKAKYGKNYHVELGNKLAQI 88 (150)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECCCTTHHHHHHHHHHTS
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHHHhCCceEEEEEEEecCChhHHHHHHHHHhcC
Confidence 58999999999999999999999999987 56643 33 67776 56788899888875
No 15
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=96.60 E-value=0.011 Score=36.73 Aligned_cols=54 Identities=11% Similarity=0.097 Sum_probs=44.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.|||..++++.+.+-.-|..|++.|-+.---|.|.++|++|++-...+......
T Consensus 34 ~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~~~~~~~~~ 87 (95)
T 2qvo_A 34 QYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQKIAQQIKSI 87 (95)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHHHHHHHHHH
Confidence 589999999999999999999999999555677889999998876655554443
No 16
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.47 E-value=0.012 Score=38.03 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=46.6
Q ss_pred hhhhhhh-CCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHH------HHHHHHHHHHhh
Q psy11008 2 EDLAALF-RMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQE------ELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F-~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~e------El~~Va~fI~~r 56 (96)
.|||..+ |++...+-.+++.|++.|-++-..+ |..++++|+. .+.+++.|+..-
T Consensus 46 ~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~~l~~l~~w~~~~ 106 (111)
T 3df8_A 46 NDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVRNSLMPLLQYISVL 106 (111)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHHHHHHHHHHHHHHh
Confidence 4899999 9999999999999999999999988 9999999997 466666666543
No 17
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.47 E-value=0.004 Score=39.41 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=41.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI 53 (96)
.|||..++++...+-..|..|++.|-++-.- |-|.+++++|++....+....
T Consensus 55 ~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~~~~~ 109 (146)
T 3tgn_A 55 SELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIAEEHH 109 (146)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHHHHHH
Confidence 5899999999999999999999999999887 678899999999888777765
No 18
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.40 E-value=0.013 Score=37.21 Aligned_cols=43 Identities=14% Similarity=0.254 Sum_probs=38.2
Q ss_pred hhhhhhh-CCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHH
Q psy11008 2 EDLAALF-RMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQE 44 (96)
Q Consensus 2 edLAa~F-~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~e 44 (96)
.|||..+ +++...+-.+++.|++.|-|....| .|..++++|+.
T Consensus 31 ~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~ 77 (107)
T 2hzt_A 31 SELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEY 77 (107)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTT
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECcc
Confidence 5899999 9999999999999999999999887 35678899984
No 19
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=96.39 E-value=0.0047 Score=38.94 Aligned_cols=50 Identities=24% Similarity=0.416 Sum_probs=38.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEE---EcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIY---ISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIy---Is~eEl~~Va~ 51 (96)
.+||..||++...|-..++.|++.|-+...- ..+|.|+| ++++++..+..
T Consensus 37 ~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~~~~~~~~~i~~~~~ 92 (110)
T 1q1h_A 37 EEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIYYWKPNIDQINEILL 92 (110)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEEEEECTHHHHC----
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEEEeecCHHHHHHHHH
Confidence 5899999999999999999999999998652 46788887 78777655443
No 20
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=96.38 E-value=0.017 Score=36.53 Aligned_cols=54 Identities=22% Similarity=0.268 Sum_probs=43.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.+||..++++...+-..|+.|++.|-+.-.- |-|.+++++|++-...+......
T Consensus 54 ~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 110 (147)
T 2hr3_A 54 SELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYGNRAK 110 (147)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHHHHHHHH
Confidence 5899999999999999999999999998774 56899999999887666555443
No 21
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=96.37 E-value=0.019 Score=36.36 Aligned_cols=55 Identities=13% Similarity=0.139 Sum_probs=46.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++.+.+-..|+.|++.|-+.-.- |-|.+++++|++-...+.......
T Consensus 55 ~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 112 (143)
T 3oop_A 55 KEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKETTELRDIV 112 (143)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999876 568899999998877766655443
No 22
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.36 E-value=0.0071 Score=39.23 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=45.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~ 54 (96)
.|||..+|++...+-..++.|++.|-+.-.-+.|+.|.+++++.+..+...+.
T Consensus 38 ~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~~~~~l~ 90 (118)
T 2jsc_A 38 GQLAAHLGLTRSNVSNHLSCLRGCGLVVATYEGRQVRYALADSHLARALGELV 90 (118)
T ss_dssp TTHHHHHSSCHHHHHHHHHHHTTTTSEEEEECSSSEEEEESSHHHHHHHHHCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCceEEEEECCEEEEEEChHHHHHHHHHHH
Confidence 58999999999989999999999999998888888889999987766655443
No 23
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=96.33 E-value=0.021 Score=35.94 Aligned_cols=53 Identities=19% Similarity=0.316 Sum_probs=44.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~ 54 (96)
.|||..++++...+-..|+.|++.|-+.-.- |-|.+++++|++-...+.....
T Consensus 47 ~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 102 (144)
T 1lj9_A 47 EKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIVR 102 (144)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHHHHHHH
Confidence 5899999999999999999999999999887 4578899999987666554443
No 24
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.31 E-value=0.014 Score=38.51 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=47.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.+||..+|++...+-..|+.|++.|-+.-.-+.|+.|.+++++.+..++..+...
T Consensus 63 ~ela~~lgis~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~l~~~~~~l~~~ 117 (122)
T 1r1t_A 63 GDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHHIVALYQNALDH 117 (122)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHHHHHH
Confidence 5899999999888889999999999999888888888899999887777766543
No 25
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=96.26 E-value=0.012 Score=38.87 Aligned_cols=55 Identities=22% Similarity=0.293 Sum_probs=43.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEE---eeCC--Cc----eEEE--cHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGV---IDDR--GK----FIYI--SQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGV---iDDR--GK----fIyI--s~eEl~~Va~fI~~r 56 (96)
.|||..+|++...|-.|++.|++.|.|.++ +|.+ |. ||.| .+...+.+++.+.+.
T Consensus 27 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~~~~~~~~~~~~l~~~ 92 (151)
T 2dbb_A 27 RELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSKVPSDADKVISEISDI 92 (151)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEESSHHHHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEEEEEeCCCCHHHHHHHHHcC
Confidence 589999999999999999999999999764 5543 54 5544 567777888888765
No 26
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=96.20 E-value=0.026 Score=37.08 Aligned_cols=68 Identities=16% Similarity=0.280 Sum_probs=56.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVE 81 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~ 81 (96)
.|||..|++....+.+=+..|..+|.|.=+-+| +|++.+-++..+..|.+. ++..|.+|++|+-+
T Consensus 24 ~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~----~~~~~~~~~~~~~~l~~~-----------~~~~~~it~ae~Rd 88 (121)
T 2pjp_A 24 RDLAKETGTDEQAMRLTLRQAAQQGIITAIVKD----RYYRNDRIVEFANMIRDL-----------DQECGSTCAADFRD 88 (121)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETT----EEEEHHHHHHHHHHHHHH-----------HHHHSSEEHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCC----ceECHHHHHHHHHHHHHH-----------HHHCCCccHHHHHH
Confidence 589999999999999999999999999998776 788888888877766553 45559999999877
Q ss_pred hcc
Q psy11008 82 NSN 84 (96)
Q Consensus 82 ~sN 84 (96)
..+
T Consensus 89 ~lg 91 (121)
T 2pjp_A 89 RLG 91 (121)
T ss_dssp HHT
T ss_pred HHC
Confidence 654
No 27
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=96.11 E-value=0.027 Score=35.38 Aligned_cols=55 Identities=18% Similarity=0.255 Sum_probs=45.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++.+.+-..|+.|++.|-++=.-| -|.++|++|++-...+.......
T Consensus 51 ~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 108 (139)
T 3eco_A 51 NDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIF 108 (139)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHHHHH
Confidence 58999999999999999999999999998754 57899999998877766554443
No 28
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=96.11 E-value=0.028 Score=36.46 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=45.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++.+.+-..|+.|++.|-+.-.- |-|-++|++|++-...+.......
T Consensus 68 ~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 125 (159)
T 3s2w_A 68 ESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLEPDMKKIA 125 (159)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999877 557889999998877766655444
No 29
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=96.10 E-value=0.02 Score=34.22 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=40.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee--CCCceEEEcHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID--DRGKFIYISQEELNSVA 50 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD--DRGKfIyIs~eEl~~Va 50 (96)
.|||..++++...+-..|+.|++.|-|...-+ .|-+|+|+|+.-...+.
T Consensus 38 ~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~~~~ 88 (109)
T 1sfx_A 38 SEIARELDLSARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEKVLK 88 (109)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHHHHH
Confidence 58999999999999999999999999998775 45578888865544333
No 30
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=96.08 E-value=0.063 Score=33.48 Aligned_cols=54 Identities=9% Similarity=0.140 Sum_probs=44.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.+||..++++...+-.-|+.|++.|-+.-.-| -|.+++++|++-...+......
T Consensus 52 ~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 108 (138)
T 1jgs_A 52 VELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAAICEQCHQL 108 (138)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHHHHHHHHHH
Confidence 47999999999999999999999999998764 4778899999877666554433
No 31
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.05 E-value=0.007 Score=36.69 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=31.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFI 39 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfI 39 (96)
.|||..+|++.+.|...|+.|++.|-|.- +.+|+|.
T Consensus 29 ~eLA~~lglsr~tv~~~l~~L~~~G~I~~--~~~G~y~ 64 (67)
T 2heo_A 29 FQLVKKCQVPKKTLNQVLYRLKKEDRVSS--PSPKYWS 64 (67)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTSEEE--EETTEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEec--CCCceEe
Confidence 68999999999999999999999999643 6678763
No 32
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=96.03 E-value=0.013 Score=39.32 Aligned_cols=55 Identities=15% Similarity=0.328 Sum_probs=42.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccE---EeeCC--Cc----eE--EEcHHH--HHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTG---VIDDR--GK----FI--YISQEE--LNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltG---ViDDR--GK----fI--yIs~eE--l~~Va~fI~~r 56 (96)
.|||..+|++...|-.||+.|++.|.|.+ ++|.+ |. || .+.+.. ++.+++.+.+.
T Consensus 28 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~~~~~~l~~~ 95 (162)
T 2p5v_A 28 VELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKW 95 (162)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEECSSTTHHHHHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEEcCCchHHHHHHHHHhcC
Confidence 58999999999999999999999999976 45544 43 33 345644 78888888765
No 33
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=96.01 E-value=0.027 Score=36.72 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=46.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++.+.+-..|..|++.|-|+-.-| -|.++|++|++-...+.......
T Consensus 64 ~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 121 (162)
T 3k0l_A 64 AKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDKLNQCNQVV 121 (162)
T ss_dssp HHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHHHHHHHHHH
Confidence 48999999999999999999999999998864 57889999998877666655443
No 34
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=96.01 E-value=0.026 Score=35.09 Aligned_cols=53 Identities=17% Similarity=0.244 Sum_probs=44.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~ 54 (96)
.|||..++++...+-..|+.|++.|-+.-.- |-|.+++++|++-...+.....
T Consensus 56 ~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 111 (140)
T 2nnn_A 56 NQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLA 111 (140)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHHHHHHH
Confidence 5899999999999999999999999999875 4577899999987666555433
No 35
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=95.98 E-value=0.026 Score=35.21 Aligned_cols=48 Identities=10% Similarity=0.248 Sum_probs=42.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSV 49 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~V 49 (96)
.+||..++++...+-..|+.|++.|-+.-.-| -|.+++++|++-...+
T Consensus 49 ~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~ 99 (142)
T 3bdd_A 49 LALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL 99 (142)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence 58999999999999999999999999998875 6788999999876655
No 36
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=95.97 E-value=0.025 Score=35.77 Aligned_cols=55 Identities=16% Similarity=0.179 Sum_probs=45.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.+||..++++...+-..|+.|++.|.+.-.-|.|+.|..++.+++..++..+.+.
T Consensus 49 ~ela~~l~is~stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~~~~~~~~ 103 (119)
T 2lkp_A 49 TDLAEAIGMEQSAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQLLDEAIYH 103 (119)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHHHHHHHHH
Confidence 5899999998888889999999999998777888888888877777666655544
No 37
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=95.96 E-value=0.038 Score=35.64 Aligned_cols=52 Identities=13% Similarity=0.218 Sum_probs=43.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI 53 (96)
.+||..++++...+-..|+.|++.|-+.-.- |-|.+++++|++-...+....
T Consensus 70 ~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 124 (162)
T 3cjn_A 70 GTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVYDRLW 124 (162)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence 5899999999999999999999999998776 567889999998765554443
No 38
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=95.95 E-value=0.023 Score=35.34 Aligned_cols=53 Identities=11% Similarity=0.194 Sum_probs=44.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~ 54 (96)
.|||..++++...+-..|+.|++.|-+.-.- |-|.+++++|+.-...+.....
T Consensus 51 ~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~~~~~~ 106 (139)
T 3bja_A 51 SKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETKKQVDV 106 (139)
T ss_dssp HHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHHHHHHH
Confidence 5899999999999999999999999998775 4578899999987766655443
No 39
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=95.95 E-value=0.036 Score=35.06 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=42.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.|||..++++...+-..|+.|++.|-+.-.- |-|.+++++|++-...+......
T Consensus 60 ~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 116 (150)
T 2rdp_A 60 GELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERIIEEVIEK 116 (150)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHHHHHHHH
Confidence 5899999999999999999999999998876 45788999999877666554433
No 40
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.92 E-value=0.039 Score=35.54 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=43.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI 53 (96)
.|||..++++...+-..|+.|++.|-++-.- |-|.+++++|++-...+....
T Consensus 62 ~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 116 (154)
T 2eth_A 62 KEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEIL 116 (154)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHHHHHH
Confidence 5899999999999999999999999999877 457889999998766655543
No 41
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=95.91 E-value=0.043 Score=34.80 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=44.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~ 54 (96)
.|||..++++...+-..|+.|++.|-+.-.- |-|.+++++|+.-...+.....
T Consensus 58 ~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 113 (152)
T 3bj6_A 58 PQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAIITAIRA 113 (152)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHHHHHHH
Confidence 5899999999999999999999999998876 4678899999987665555433
No 42
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=95.89 E-value=0.024 Score=35.69 Aligned_cols=52 Identities=10% Similarity=0.163 Sum_probs=44.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI 53 (96)
.+||..++++...+-..|+.|++.|-++=.-| -|.+++++|++....+....
T Consensus 55 ~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (142)
T 2bv6_A 55 KKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS 109 (142)
T ss_dssp HHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred HHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence 58999999999999999999999999998775 67789999998876655543
No 43
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=95.88 E-value=0.0062 Score=40.28 Aligned_cols=55 Identities=18% Similarity=0.358 Sum_probs=43.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCC--C----ceEEEc---HHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDR--G----KFIYIS---QEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDR--G----KfIyIs---~eEl~~Va~fI~~r 56 (96)
.+||..+|++...+-.||+.|++.|.|.+.- |.| | -|+.++ ++..+.+++.+.+.
T Consensus 25 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~~~~~~~~~~~~~~~~l~~~ 91 (150)
T 2w25_A 25 SELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPEAVGHLLSAFVAITPLDPSQPDDAPARLEHI 91 (150)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEESCTTSCCCHHHHHTTC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChhHcccceEEEEEEEEcCCCCHHHHHHHHhcC
Confidence 5899999999999999999999999997654 433 3 267776 55567777777655
No 44
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=95.88 E-value=0.028 Score=35.14 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=43.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI 53 (96)
.+||..++++...+-..|+.|++.|-+.=.-| -|.++|++|++-...+....
T Consensus 54 ~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~~~~~ 108 (141)
T 3bro_A 54 RDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIIL 108 (141)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHH
T ss_pred HHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHHHHHH
Confidence 58999999999999999999999999987764 57789999998755544443
No 45
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.86 E-value=0.023 Score=35.45 Aligned_cols=53 Identities=11% Similarity=0.180 Sum_probs=44.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~ 54 (96)
.+||..++++...+-..|+.|++.|-++-.-| -|.+++++|++-...+.....
T Consensus 54 ~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 109 (142)
T 2fbi_A 54 YQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSG 109 (142)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 58999999999999999999999999998865 478899999987666555433
No 46
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=95.84 E-value=0.051 Score=34.08 Aligned_cols=53 Identities=21% Similarity=0.291 Sum_probs=44.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~ 54 (96)
.|||..++++...+-..|+.|++.|-+.-.-| -|.+++++|++-...+.....
T Consensus 54 ~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~~ 109 (146)
T 2gxg_A 54 AYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETFNKGIE 109 (146)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHHHHHHH
Confidence 58999999999999999999999999998765 577889999987766655443
No 47
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=95.81 E-value=0.03 Score=35.68 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=44.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++.+.+-.-|+.|++.|-++=.- |-|.++|++|++-...+.......
T Consensus 54 ~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 111 (140)
T 3hsr_A 54 KKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIKSPLAEIS 111 (140)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTHHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHHHHHHHHH
Confidence 5899999999999999999999999999875 568899999999877776655444
No 48
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=95.77 E-value=0.032 Score=34.99 Aligned_cols=52 Identities=23% Similarity=0.374 Sum_probs=43.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI 53 (96)
.+||..++++...+-..|+.|++.|-++-.-| -|.+++++|++-...+....
T Consensus 51 ~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~~~~~~~ 105 (145)
T 2a61_A 51 GELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVI 105 (145)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHHHHHHHH
Confidence 58999999999999999999999999998864 46778999998766555443
No 49
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=95.74 E-value=0.0093 Score=36.23 Aligned_cols=43 Identities=12% Similarity=0.223 Sum_probs=34.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEE--eeCCCceEEEcHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGV--IDDRGKFIYISQE 44 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGV--iDDRGKfIyIs~e 44 (96)
.|||..||++...+-..++.|++.|.|... -..+|.|..++++
T Consensus 18 ~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~~ 62 (81)
T 2htj_A 18 AEIAEALAVTDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKGE 62 (81)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESSC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEEChh
Confidence 589999999999999999999999999843 3456667776654
No 50
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=95.74 E-value=0.013 Score=40.61 Aligned_cols=55 Identities=20% Similarity=0.450 Sum_probs=45.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccE---EeeCC--Cc----eE--EEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTG---VIDDR--GK----FI--YISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltG---ViDDR--GK----fI--yIs~eEl~~Va~fI~~r 56 (96)
.|||..+|++...|..||+.|++.|.|.+ ++|.+ |. || .+.++.++.+++.+.+.
T Consensus 45 ~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~~~~~~~~v~~~l~~~ 110 (171)
T 2e1c_A 45 REISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKY 110 (171)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEECTTCHHHHHHHHHTS
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEECcchHHHHHHHHhcC
Confidence 58999999999999999999999999976 35543 54 44 44578899999999876
No 51
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=95.74 E-value=0.058 Score=34.28 Aligned_cols=53 Identities=13% Similarity=0.119 Sum_probs=43.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~ 54 (96)
.+||..++++...+-..|+.|++.|-+.-.- |-|.+++++|++-...+.....
T Consensus 55 ~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 110 (155)
T 1s3j_A 55 SEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLA 110 (155)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHHHHHHH
Confidence 5899999999999999999999999998776 4578899999987665554433
No 52
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=95.74 E-value=0.041 Score=35.15 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=39.7
Q ss_pred hhhhhhh-CCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHH
Q psy11008 2 EDLAALF-RMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEEL 46 (96)
Q Consensus 2 edLAa~F-~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl 46 (96)
.|||..+ +++...+-.+++.|++.|-|....| .|-+++++|+.-.
T Consensus 39 ~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~ 87 (112)
T 1z7u_A 39 GELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGY 87 (112)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHH
Confidence 5899999 9999999999999999999999886 4677889998743
No 53
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=95.73 E-value=0.033 Score=34.19 Aligned_cols=55 Identities=11% Similarity=0.141 Sum_probs=44.4
Q ss_pred hhhhhhhCCChHH-HHHHHHHHHHcCCcc-EEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQS-VIDRIVELQKTGALT-GVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~-vI~RI~eL~~~g~lt-GViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++... +-..|+.|++.|-+. .--|-|.+++++|++-...+.......
T Consensus 34 ~eLa~~l~is~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~~~~~~~~ 90 (95)
T 2pg4_A 34 AEIVKASGVSEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLAECLEKCR 90 (95)
T ss_dssp HHHHHHHCCCHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHHHHHHHHH
Confidence 5899999999999 889999999999998 112458899999998877766655543
No 54
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=95.73 E-value=0.026 Score=35.82 Aligned_cols=55 Identities=9% Similarity=0.084 Sum_probs=42.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++...+-..|+.|++.|-+.-.- |-|.+++++|++-...+.......
T Consensus 58 ~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~~~~~~~~ 115 (148)
T 3nrv_A 58 QKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELYEVASDFA 115 (148)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHHHHHHHHH
Confidence 4899999999999999999999999998774 467999999998877666655443
No 55
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=95.68 E-value=0.015 Score=38.53 Aligned_cols=55 Identities=20% Similarity=0.432 Sum_probs=45.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEE---eeCC--Cc----eE--EEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGV---IDDR--GK----FI--YISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGV---iDDR--GK----fI--yIs~eEl~~Va~fI~~r 56 (96)
.+||..+|++...|-.||+.|++.|.|.+. +|.+ |. |+ .+.++.++.+++.+.+.
T Consensus 25 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~~~~~~~~~~~~l~~~ 90 (151)
T 2cyy_A 25 REISKITGLAESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKVKAGKYSEVASNLAKY 90 (151)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEECTTCHHHHHHHHHTC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEECcccHHHHHHHHhcC
Confidence 589999999999999999999999999763 5543 43 44 45578899999999876
No 56
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=95.67 E-value=0.032 Score=37.13 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=43.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++...+-..|..|++.|-|+=.- |-|.++|++|++-...+.......
T Consensus 72 ~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 129 (166)
T 3deu_A 72 IQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLIAEMEEVI 129 (166)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHHHHHHHHH
T ss_pred HHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 5899999999999999999999999999776 668899999998877766655443
No 57
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=95.66 E-value=0.044 Score=34.26 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=44.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~ 54 (96)
.+||..++++...+-..|+.|++.|-++=.-| -|.+++++|++-...+.....
T Consensus 56 ~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~ 111 (146)
T 2fbh_A 56 RELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEA 111 (146)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHHH
T ss_pred HHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHHHHHHH
Confidence 58999999999999999999999999987764 588899999987766655433
No 58
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=95.64 E-value=0.058 Score=35.56 Aligned_cols=54 Identities=11% Similarity=0.135 Sum_probs=45.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.|||..++++.+.+-..|+.|++.|-|.-.-| -|.+++++|++-...+......
T Consensus 63 ~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~ 119 (168)
T 2nyx_A 63 ATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVRQVTEH 119 (168)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 58999999999999999999999999998765 5778899999887666554433
No 59
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=95.64 E-value=0.031 Score=36.01 Aligned_cols=55 Identities=24% Similarity=0.379 Sum_probs=43.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEE---eeCC--Cc----eE--EEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGV---IDDR--GK----FI--YISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGV---iDDR--GK----fI--yIs~eEl~~Va~fI~~r 56 (96)
.+||..+|++...+-.|++.|++.|-+.+. +|.+ |. |+ .+.++.+..+++.+.+.
T Consensus 22 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~l~~~ 87 (141)
T 1i1g_A 22 TEIAKKLGISETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVDTKPEKLFEVAEKLKEY 87 (141)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEEECGGGHHHHHHHHHHS
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEEECchhHHHHHHHHhcC
Confidence 589999999999999999999999999765 3432 43 22 23678899999999886
No 60
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=95.62 E-value=0.034 Score=36.66 Aligned_cols=55 Identities=16% Similarity=0.431 Sum_probs=44.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEE---eeCC--Cc----eEE--EcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGV---IDDR--GK----FIY--ISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGV---iDDR--GK----fIy--Is~eEl~~Va~fI~~r 56 (96)
.|||..+|++...|-.||+.|++.|.|.+. +|.+ |. |+. +.++.++.++.++.+.
T Consensus 23 ~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~~~~~~~~~~~l~~~ 88 (144)
T 2cfx_A 23 RELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYERFKSYIQTL 88 (144)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEGGGCHHHHHHHHHTC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChhhcCceEEEEEEEEECcccHHHHHHHHhcC
Confidence 589999999999999999999999999864 5644 42 333 4677788898888775
No 61
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=95.62 E-value=0.055 Score=35.20 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=46.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++.+.+-.-|..|++.|-|.=.- |-|.++|++|++-...+.......
T Consensus 71 ~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~ 128 (161)
T 3e6m_A 71 GQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLAEISPLI 128 (161)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHHHHHHHH
Confidence 5899999999999999999999999998765 568899999998877766655543
No 62
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=95.61 E-value=0.06 Score=34.03 Aligned_cols=44 Identities=11% Similarity=0.044 Sum_probs=38.1
Q ss_pred hhhhhhh-CCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHH
Q psy11008 2 EDLAALF-RMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEE 45 (96)
Q Consensus 2 edLAa~F-~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eE 45 (96)
.|||..+ |++...+-.+++.|++.|-+....| .|-.++++|+.-
T Consensus 42 ~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G 89 (107)
T 2fsw_A 42 GELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLG 89 (107)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred HHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccH
Confidence 5899999 5999999999999999999999886 356788999964
No 63
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=95.59 E-value=0.041 Score=34.86 Aligned_cols=55 Identities=13% Similarity=0.121 Sum_probs=46.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++...+-..|+.|++.|-++-.-| -|.+++++|++-...+.......
T Consensus 54 ~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 111 (144)
T 3f3x_A 54 VYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVLLEANEVL 111 (144)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 58999999999999999999999999998875 46779999998877766655444
No 64
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=95.59 E-value=0.025 Score=38.10 Aligned_cols=45 Identities=22% Similarity=0.282 Sum_probs=39.2
Q ss_pred hhhhhhh--CCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHH
Q psy11008 2 EDLAALF--RMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSV 49 (96)
Q Consensus 2 edLAa~F--~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~V 49 (96)
.+||..+ +++.+.|-.|++.|++.|-|... .|| +..||++-..-+
T Consensus 31 ~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~--~rg-~Y~LT~~G~~~l 77 (111)
T 3b73_A 31 KELEDRDEIRISKSSVSRRLKKLADHDLLQPL--ANG-VYVITEEGEAYL 77 (111)
T ss_dssp HHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC--STT-CEEECHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec--CCc-eEEECchHHHHH
Confidence 4799999 99999999999999999999986 678 888999875443
No 65
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=95.56 E-value=0.043 Score=34.79 Aligned_cols=55 Identities=11% Similarity=0.164 Sum_probs=45.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++...+-..|..|++.|-++-.-| -|.++|++|++-...+.......
T Consensus 49 ~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 106 (145)
T 3g3z_A 49 KHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYAAPLTESA 106 (145)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHHHHHHHHH
Confidence 58999999999999999999999999997654 57889999998877665554443
No 66
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=95.53 E-value=0.015 Score=37.54 Aligned_cols=42 Identities=19% Similarity=0.360 Sum_probs=37.7
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
|+.||..|+++.+++-.-|..|..+|+|.|.||.--..|...
T Consensus 33 l~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~ 74 (84)
T 1ufm_A 33 FEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE 74 (84)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEEC
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeC
Confidence 468999999999999999999999999999999877777654
No 67
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=95.50 E-value=0.028 Score=36.04 Aligned_cols=54 Identities=15% Similarity=0.102 Sum_probs=41.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccE-----EeeCCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTG-----VIDDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltG-----ViDDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.|||..++++...+-..|..|++.|-+.- --|-|.++|++|++-...+......
T Consensus 55 ~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~~~~~~~ 113 (151)
T 3kp7_A 55 GQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYIKERKAI 113 (151)
T ss_dssp HHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHHHHHHHH
Confidence 58999999999999999999999999995 3567899999999877666655443
No 68
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=95.49 E-value=0.033 Score=35.84 Aligned_cols=54 Identities=15% Similarity=0.166 Sum_probs=40.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.|||..++++...+-..|+.|++.|-+.-.- |-|.+++++|++-...+......
T Consensus 67 ~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 123 (162)
T 2fa5_A 67 SEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVYETVAPL 123 (162)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 5899999999999999999999999998765 56889999999876665554433
No 69
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=95.46 E-value=0.052 Score=34.74 Aligned_cols=54 Identities=17% Similarity=0.242 Sum_probs=42.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.|||..++++...+-..|+.|++.|-+.-.- |-|.+++++|+.-...+......
T Consensus 61 ~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 117 (155)
T 3cdh_A 61 TRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALAESLVAS 117 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHHHHHHHH
Confidence 5899999999999999999999999998654 56789999999877666554443
No 70
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=95.43 E-value=0.028 Score=35.95 Aligned_cols=48 Identities=15% Similarity=0.238 Sum_probs=38.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSV 49 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~V 49 (96)
.+||..++++...+-..|+.|++.|-+.=.- |-|.+++++|++-...+
T Consensus 65 ~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~ 115 (153)
T 2pex_A 65 SEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALR 115 (153)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGG
T ss_pred HHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHH
Confidence 5899999999999999999999999998776 55888999999865443
No 71
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=95.40 E-value=0.038 Score=35.58 Aligned_cols=55 Identities=9% Similarity=0.198 Sum_probs=43.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++.+.+-.-|..|++.|-|+=.- |-|.++|++|++-...+..+....
T Consensus 59 ~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 116 (149)
T 4hbl_A 59 NSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQEAVFEAI 116 (149)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHHHHHHHHH
Confidence 5899999999999999999999999998765 568899999999888877765544
No 72
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=95.35 E-value=0.082 Score=35.60 Aligned_cols=55 Identities=9% Similarity=0.175 Sum_probs=43.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee--CCCceEEEcHHH------HHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID--DRGKFIYISQEE------LNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD--DRGKfIyIs~eE------l~~Va~fI~~r 56 (96)
.|||..+|++...+-.+|+.|++.|-|....+ |+..++++|+.- +.++.+|..+.
T Consensus 41 ~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~l~~l~~w~~~~ 103 (146)
T 2f2e_A 41 GEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPLLVAIRQWGEDY 103 (146)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999987 554566688853 44555555543
No 73
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=95.35 E-value=0.038 Score=35.34 Aligned_cols=55 Identities=18% Similarity=0.268 Sum_probs=40.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++.+.+-..|+.|++.|-+.-.- |-|.++|++|++-...+.......
T Consensus 58 ~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~ 115 (150)
T 3fm5_A 58 RGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARV 115 (150)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHHHH
Confidence 5899999999999999999999999998754 468899999998887776665544
No 74
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=95.33 E-value=0.083 Score=31.52 Aligned_cols=55 Identities=20% Similarity=0.335 Sum_probs=42.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeC---CC---ceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDD---RG---KFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDD---RG---KfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..+|++...+-..++.|++.|-+.-.-+. +| .++.++++-+..+..++.+.
T Consensus 40 ~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~~~gr~~~~~~l~~~~~~~~~~~~~~~ 100 (109)
T 2d1h_A 40 EELADIFKLSKTTVENSLKKLIELGLVVRTKTEGKKIGRPKYYYSISSNILEKIRNDLLNC 100 (109)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC-------CCEEEEECTTHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccCCCCCCCeeeecCHHHHHHHHHHHHHH
Confidence 589999999999999999999999999987652 13 35668886666666666554
No 75
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=95.33 E-value=0.05 Score=35.45 Aligned_cols=49 Identities=12% Similarity=0.278 Sum_probs=38.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee-CCCceEE-EcHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID-DRGKFIY-ISQEELNSVA 50 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD-DRGKfIy-Is~eEl~~Va 50 (96)
.+||..||++..-|.+.++.|+++|.|.-.-. -+|-|+. ++.+++..+.
T Consensus 47 ~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 47 SKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 58999999999999999999999999876543 3676664 4555555543
No 76
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=95.31 E-value=0.034 Score=35.73 Aligned_cols=55 Identities=13% Similarity=0.285 Sum_probs=45.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEE---eeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGV---IDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGV---iDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++...+-.-|+.|++.|-+.=. -|.|.++|++|++-...+.......
T Consensus 57 ~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~ 114 (127)
T 2frh_A 57 KDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRV 114 (127)
T ss_dssp HHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 589999999999998999999999999864 3568999999999877666555443
No 77
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=95.29 E-value=0.083 Score=35.91 Aligned_cols=55 Identities=13% Similarity=0.178 Sum_probs=46.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.+||..++++.+.+-..|..|++.|-|+-.-| -|.++|++|++-...+.......
T Consensus 61 ~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 118 (189)
T 3nqo_A 61 NNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTG 118 (189)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998875 47789999998877666555443
No 78
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=95.29 E-value=0.014 Score=37.28 Aligned_cols=55 Identities=27% Similarity=0.360 Sum_probs=36.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.|||..++++.+.+-.-|+.|++.|-++=.- |-|.++|++|++-...+.......
T Consensus 61 ~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~ 118 (148)
T 3jw4_A 61 KDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNIF 118 (148)
T ss_dssp HHHHHC------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHHHHH
Confidence 4899999999999999999999999998776 568899999998876666554443
No 79
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=95.28 E-value=0.038 Score=34.38 Aligned_cols=52 Identities=13% Similarity=0.343 Sum_probs=43.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI 53 (96)
.|||..++++...+-..|+.|++.|-+.-.-| -|.+++++|++-...+....
T Consensus 47 ~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~~~~~~~~ 101 (138)
T 3bpv_A 47 DELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGEEIIPLIL 101 (138)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHTHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHHHHHHHHH
Confidence 58999999999999999999999999998765 46788999998765555443
No 80
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=95.26 E-value=0.072 Score=36.76 Aligned_cols=55 Identities=13% Similarity=0.290 Sum_probs=43.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEE---eeCC--C---ceEEE--cHH--------HHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGV---IDDR--G---KFIYI--SQE--------ELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGV---iDDR--G---KfIyI--s~e--------El~~Va~fI~~r 56 (96)
.|||..+|++...|..||+.|++.|.|.+. +|.+ | -|+.| ++. .++.++..+.+.
T Consensus 35 ~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~~~~~~f~~~~~~~~~~~l~~~ 107 (171)
T 2ia0_A 35 SELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGKPVIEDFLERYISYISSTLSAL 107 (171)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESCC--CHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECCccccccchhHHHHHHHHHHCC
Confidence 589999999999999999999999999764 4543 3 25444 444 788888888876
No 81
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=95.26 E-value=0.029 Score=35.63 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=37.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.|||..++++.+.+-..|..|++.|-+.-.-| -|.++|++|++-...+......
T Consensus 55 ~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~ 111 (142)
T 3ech_A 55 QDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIHLHAELI 111 (142)
T ss_dssp HHHHHHHC---CHHHHHHHHHHHTTSEEC----------CCEECHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHHHHHHHHHH
Confidence 58999999999999999999999999988765 5889999999877666655443
No 82
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=95.25 E-value=0.032 Score=35.84 Aligned_cols=54 Identities=15% Similarity=0.210 Sum_probs=42.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.+||..++++...+-..|+.|++.|-|+-.- |-|.+++++|++-...+......
T Consensus 66 ~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~ 122 (160)
T 3boq_A 66 GKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTFKQASEA 122 (160)
T ss_dssp HHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHHHHHHHH
Confidence 5899999999999999999999999998764 56889999999887766554443
No 83
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=95.23 E-value=0.029 Score=35.28 Aligned_cols=52 Identities=6% Similarity=0.250 Sum_probs=45.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~ 54 (96)
.|||..+|++...+-..++.|++. -+..--+.|..|.+++++.+..+..++.
T Consensus 45 ~ela~~l~is~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~~l~ 96 (99)
T 2zkz_A 45 TQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGIIKLLN 96 (99)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHHHHHC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHHHHHH
Confidence 589999999998888999999999 8888888777788889999998888774
No 84
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=95.19 E-value=0.075 Score=35.50 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=38.8
Q ss_pred hhhhhhh-CCChHHHHHHHHHHHHcCCccEEeeC---CCceEEEcHHH
Q psy11008 2 EDLAALF-RMKTQSVIDRIVELQKTGALTGVIDD---RGKFIYISQEE 45 (96)
Q Consensus 2 edLAa~F-~lktq~vI~RI~eL~~~g~ltGViDD---RGKfIyIs~eE 45 (96)
.|||..+ |++...+-.+++.|++.|-|.-..|. |.+++++|+.-
T Consensus 52 ~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G 99 (131)
T 1yyv_A 52 SDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLG 99 (131)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHH
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccH
Confidence 4899999 79999999999999999999998873 67799999863
No 85
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=95.04 E-value=0.08 Score=33.70 Aligned_cols=54 Identities=13% Similarity=0.083 Sum_probs=43.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccE--Ee---eCCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTG--VI---DDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltG--Vi---DDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.+||..++++.+.+-..|..|++.|-+.= .- |-|.+++++|++-...+......
T Consensus 59 ~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~ 117 (154)
T 2qww_A 59 ADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTAN 117 (154)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHHHHHHHHHSC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHHHHHHHHHhh
Confidence 58999999999989899999999999987 44 45677999999887666555433
No 86
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=95.02 E-value=0.026 Score=35.29 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=33.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFI 39 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfI 39 (96)
.+||..+|++...|-.+|..|++.|.|.++-+..|+|.
T Consensus 35 ~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~~~W~ 72 (77)
T 1qgp_A 35 HDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWK 72 (77)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSSCEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCceE
Confidence 58999999999988899999999999999876666653
No 87
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=94.94 E-value=0.039 Score=34.83 Aligned_cols=49 Identities=8% Similarity=0.215 Sum_probs=41.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVA 50 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va 50 (96)
.|||..++++...+-.-|..|++.|-+.-.-| -|.+++++|++-...+.
T Consensus 58 ~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~ 109 (147)
T 1z91_A 58 KKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKE 109 (147)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGG
T ss_pred HHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence 58999999999999999999999999987654 58899999998654433
No 88
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=94.94 E-value=0.14 Score=32.85 Aligned_cols=48 Identities=15% Similarity=0.140 Sum_probs=39.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATF 52 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~f 52 (96)
.|||..++++...|-..|+.|++.|-|.-. +++.+++|+.-...+...
T Consensus 26 ~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~~g~~~~~~~ 73 (142)
T 1on2_A 26 SDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTSKGKKIGKRL 73 (142)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEchhHHHHHHHH
Confidence 589999999999999999999999988754 568999999765554443
No 89
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=94.85 E-value=0.03 Score=36.86 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=40.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI 53 (96)
+|||...|++.+.+-.-+++|+++|.|. . ++|+++-...+.|.++|.++
T Consensus 167 ~~lA~~lg~sr~tvsR~l~~l~~~g~I~--~-~~~~i~i~d~~~L~~~a~~l 215 (216)
T 4ev0_A 167 HELAALAGTSRETVSRVLHALAEEGVVR--L-GPGTVEVREAALLEEIAFGL 215 (216)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEE--E-ETTEEEESCHHHHHHHHTTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEE--e-cCCEEEEeCHHHHHHHhhcc
Confidence 6899999998888888899999999885 2 56777667888888888753
No 90
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=94.83 E-value=0.053 Score=35.51 Aligned_cols=54 Identities=11% Similarity=0.110 Sum_probs=42.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.|||..++++.+.+-.-|..|++.|-|+-.-| -|-++|++|++-...+......
T Consensus 66 ~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 122 (168)
T 3u2r_A 66 LQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGLKLLKDLEEP 122 (168)
T ss_dssp HHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHHHHHHHHHHH
Confidence 58999999999999999999999999998875 5778999999877666655543
No 91
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=94.78 E-value=0.066 Score=35.02 Aligned_cols=54 Identities=19% Similarity=0.340 Sum_probs=40.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee--CC-C-ceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID--DR-G-KFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD--DR-G-KfIyIs~eEl~~Va~fI~~r 56 (96)
.+||..++++...|-..|+.|++.|-+...-+ |+ | .|+|... ....+...|++.
T Consensus 46 ~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~-~~~~~~~~i~~~ 103 (123)
T 3r0a_A 46 DALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIY-SKNQIRNIIQKI 103 (123)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEEC-CHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecC-CHHHHHHHHHHH
Confidence 58999999999999999999999999987543 44 4 3566542 345555555555
No 92
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=94.52 E-value=0.027 Score=38.20 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=43.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccE---EeeCC--Cc----eEEEc--H---HHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTG---VIDDR--GK----FIYIS--Q---EELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltG---ViDDR--GK----fIyIs--~---eEl~~Va~fI~~r 56 (96)
.+||..+|++...|..||+.|++.|.|.| ++|.+ |. ||.|+ + +.++.+++.+.+.
T Consensus 21 ~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v~~~~~~~~~~~~~~l~~~ 89 (162)
T 3i4p_A 21 ADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRTASHSIEWLKRFSEVVSEF 89 (162)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEECCSCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEEcCCChHHHHHHHHHHhcC
Confidence 58999999999999999999999999875 45643 32 55554 2 4588899988876
No 93
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=94.41 E-value=0.12 Score=32.02 Aligned_cols=40 Identities=13% Similarity=0.212 Sum_probs=32.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeC---CCceEEE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDD---RGKFIYI 41 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDD---RGKfIyI 41 (96)
.|||..+|++...+-..++.|++.|-+.-.-|+ |..|+.+
T Consensus 45 ~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~ 87 (152)
T 1ku9_A 45 SDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGERKNYYEAV 87 (152)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCSSCEEEEC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCceEEEeec
Confidence 589999999999999999999999999998642 3334444
No 94
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=94.30 E-value=0.14 Score=35.76 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=45.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.+||..++++...+-..|..|++.|-|.-.-| -|-++|++|++-...+.......
T Consensus 66 ~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~ 123 (207)
T 2fxa_A 66 SEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVFWSLLEEF 123 (207)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHHHHHHHHC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHHHHHHHHH
Confidence 48999999999999999999999999998875 57889999999888777766544
No 95
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=93.97 E-value=0.3 Score=31.77 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=38.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI 53 (96)
.+||..|+++...+-..|+.|++.|-+.- .+|+.+++|+.-...+....
T Consensus 58 ~~la~~l~vs~~tvs~~l~~Le~~Glv~r---~~~~~~~lT~~g~~~~~~~~ 106 (155)
T 2h09_A 58 VDMAARLGVSQPTVAKMLKRLATMGLIEM---IPWRGVFLTAEGEKLAQESR 106 (155)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTCEEE---ETTTEEEECHHHHHHHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHCCCEEE---ecCCceEEChhHHHHHHHHH
Confidence 48999999999999999999999986542 35688999998765554443
No 96
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=93.94 E-value=0.23 Score=32.83 Aligned_cols=54 Identities=17% Similarity=0.224 Sum_probs=45.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.|||..++++.+.+-.-|..|++.|-+.=.-| -|.++|++|++-...+......
T Consensus 50 ~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 106 (151)
T 4aik_A 50 IQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPIIEQVDGV 106 (151)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHHHHHHHH
Confidence 48999999999999999999999999987776 5788999999877665554433
No 97
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=93.88 E-value=0.3 Score=31.94 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=43.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI 53 (96)
.|||..++++.+.+-.-|..|++.|-++=.-| -|.++|++|++-...+....
T Consensus 55 ~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~~ 109 (147)
T 4b8x_A 55 SKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAAT 109 (147)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHHH
Confidence 48999999999999999999999999998776 58899999998876665543
No 98
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=93.85 E-value=0.26 Score=31.29 Aligned_cols=47 Identities=15% Similarity=0.340 Sum_probs=37.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATF 52 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~f 52 (96)
.|||..++++...|-..|+.|++.|-+.-. . +.+++|+.-.......
T Consensus 35 ~ela~~l~is~~tv~~~l~~Le~~Gli~r~--~--~~~~Lt~~g~~~~~~~ 81 (139)
T 2x4h_A 35 NRIAKDLKIAPSSVFEEVSHLEEKGLVKKK--E--DGVWITNNGTRSINYL 81 (139)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T--TEEEECHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCEEec--C--CeEEEChhHHHHHHHH
Confidence 589999999999999999999999887643 2 6799999776544433
No 99
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=93.75 E-value=0.14 Score=33.62 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=38.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
++||...|++.+.+-.-+++|+++|.|.- ++|+++-...+.|.++|.
T Consensus 173 ~~lA~~lg~sr~tvsR~l~~L~~~g~I~~---~~~~i~i~d~~~L~~~a~ 219 (220)
T 3dv8_A 173 ETIANHLGSHREVITRMLRYFQVEGLVKL---SRGKITILDSKRLETLQR 219 (220)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE---ETTEEEESCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEe---CCCEEEEeCHHHHHHHhc
Confidence 68999999988888888999999998752 477777778888888774
No 100
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=93.74 E-value=0.22 Score=36.47 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=57.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVE 81 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~ 81 (96)
.|||..+++...++.+-+..|...|.|+=|-+| +|++.+-++.+++.|++. + ..|.+|++++-.
T Consensus 161 ~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~----~~~~~~~~~~~~~~l~~~-----------~-~~~~it~a~~Rd 224 (258)
T 1lva_A 161 KEVAGSFNLDPSELEELLHYLVREGVLVKINDE----FYWHRQALGEAREVIKNL-----------A-STGPFGLAEARD 224 (258)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSS----BEEEHHHHHHHHHHHHHH-----------H-TTSCBCHHHHHH
T ss_pred HHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCC----eEEcHHHHHHHHHHHHHH-----------H-hcCCcCHHHHHH
Confidence 589999999999998999999999999998776 799999999988888765 4 559999998876
Q ss_pred hcc
Q psy11008 82 NSN 84 (96)
Q Consensus 82 ~sN 84 (96)
..+
T Consensus 225 ~lg 227 (258)
T 1lva_A 225 ALG 227 (258)
T ss_dssp HHT
T ss_pred HhC
Confidence 543
No 101
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=93.72 E-value=0.25 Score=35.06 Aligned_cols=73 Identities=14% Similarity=0.227 Sum_probs=52.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVE 81 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~ 81 (96)
.|||..++++...+-..|+.|++.|-++=. +.+.|++|++-.......+..+ .-+..|+...=-++..+..+
T Consensus 24 ~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~---~~~~i~LT~~G~~~~~~~~~~h-----~~~e~~l~~~lg~~~~e~~~ 95 (214)
T 3hrs_A 24 KEIAQLMQVSPPAVTEMMKKLLAEELLIKD---KKAGYLLTDLGLKLVSDLYRKH-----RLIEVFLVHHLGYTTEEIHE 95 (214)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECHHHHHHHHHHHHHH-----HHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHHHHCCCEEEe---cCCCeEECHHHHHHHHHHHHHH-----HHHHHHHHHHhCCCHHHHHH
Confidence 589999999999999999999999988654 3378999999887766665544 24455555433355554433
Q ss_pred h
Q psy11008 82 N 82 (96)
Q Consensus 82 ~ 82 (96)
.
T Consensus 96 ~ 96 (214)
T 3hrs_A 96 E 96 (214)
T ss_dssp H
T ss_pred H
Confidence 3
No 102
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.38 E-value=0.078 Score=42.18 Aligned_cols=45 Identities=11% Similarity=0.293 Sum_probs=41.1
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEE 45 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eE 45 (96)
++++|..||++.+++-.-+-.|..+|.|.|.||--.+.++++++.
T Consensus 319 l~~iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~ 363 (394)
T 3txn_A 319 VAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEET 363 (394)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCc
Confidence 468999999999999999999999999999999999999997764
No 103
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=93.06 E-value=0.5 Score=30.42 Aligned_cols=47 Identities=11% Similarity=0.180 Sum_probs=37.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
.+||.+||++..-|.+-++.|+++|-|.-+ +|+-.||++-..+.+..
T Consensus 37 ~~La~~~~vSr~tvr~al~~L~~~Gli~~~---~~~G~~V~~~~~~~~~~ 83 (113)
T 3tqn_A 37 RKISTEYQINPLTVSKAYQSLLDDNVIEKR---RGLGMLVKAGARQRLLT 83 (113)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECTTHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEe---cCCeEEEeCCchHHHHH
Confidence 479999999999999999999999987543 67777787765554444
No 104
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=93.03 E-value=0.2 Score=33.31 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=36.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVA 50 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va 50 (96)
+|||...|++.+.+-.-+++|+++|.|.= ++|+++-...+.|.++|
T Consensus 181 ~~lA~~lg~sr~tvsR~l~~l~~~g~I~~---~~~~i~i~d~~~L~~~a 226 (227)
T 3d0s_A 181 EEIAQLVGASRETVNKALADFAHRGWIRL---EGKSVLISDSERLARRA 226 (227)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEE---ETTEEEESCHHHHHHHH
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHCCCEEe---cCCEEEEcCHHHHHHhh
Confidence 58999999998888888999999997642 45665555777787765
No 105
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=92.90 E-value=0.21 Score=32.88 Aligned_cols=47 Identities=26% Similarity=0.339 Sum_probs=37.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
++||...|++.+.+-.-+++|+++|.|. . ++|++.-..++.|.++|.
T Consensus 150 ~~lA~~lg~sr~tvsR~l~~L~~~g~I~--~-~~~~i~i~d~~~L~~~~~ 196 (202)
T 2zcw_A 150 DELAAAVGSVRETVTKVIGELAREGYIR--S-GYGKIQLLDLKGLKELAE 196 (202)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEE--E-ETTEEEESCHHHHHHHHT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEE--e-CCCEEEEeCHHHHHHHhc
Confidence 6899999998888888899999999886 2 456655557777877764
No 106
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=92.86 E-value=0.063 Score=35.82 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=42.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.+||..++++...+-..|+.|++.|-|.-.- |-|.++|++|+.-...+......
T Consensus 90 ~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~ 146 (181)
T 2fbk_A 90 TELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLLPA 146 (181)
T ss_dssp HHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 4899999999999999999999999998774 56788999999877766554443
No 107
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=92.73 E-value=0.24 Score=33.20 Aligned_cols=47 Identities=19% Similarity=0.126 Sum_probs=37.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATF 52 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~f 52 (96)
++||...|++.+.+-.-+++|+++| | . -++|+++-...+.|.++|.+
T Consensus 182 ~~iA~~lg~sr~tvsR~l~~L~~~g-i--~-~~~~~i~I~d~~~L~~~~~~ 228 (237)
T 3fx3_A 182 MLIAGRLGMKPESLSRAFSRLKAAG-V--T-VKRNHAEIEDIALLRDYAES 228 (237)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHGGGT-E--E-CCTTEEEESCHHHHHHHHCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-e--E-eeCCEEEEcCHHHHHHHhcC
Confidence 6899999998888888899999999 5 2 35666555578888887754
No 108
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=92.64 E-value=0.28 Score=33.89 Aligned_cols=54 Identities=19% Similarity=0.206 Sum_probs=38.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCC-ccE----E-eeCCC-ce--EEE-------cHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGA-LTG----V-IDDRG-KF--IYI-------SQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~-ltG----V-iDDRG-Kf--IyI-------s~eEl~~Va~fI~~ 55 (96)
.|||..||++..-|..+|+.|++.|. |.+ . +.... .+ ++. +++|+.++...+..
T Consensus 40 ~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~~~~Gy~l~~~~~~l~~~~~~~~~~~~~~~e~~~l~~~~~~ 109 (187)
T 1j5y_A 40 AQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGGKSGVSRLVAVKHAPEEIKEELLCVVRNGGR 109 (187)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHTCCCEEETTEEECCTTTCSEEEEEEEECCGGGHHHHHHHHHHTTCE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeEEEECCEEEECCcccccceeeeecCccccCHHHHHHHHHhCCC
Confidence 58999999999999999999999998 764 2 12221 11 222 67777777655544
No 109
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=92.45 E-value=0.18 Score=33.68 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=37.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEE-cHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYI-SQEELNSVATF 52 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyI-s~eEl~~Va~f 52 (96)
++||...|++.+.+-.-+++|+++|.|.= .+|+.|.| ..+.|.++|.+
T Consensus 167 ~~lA~~lG~sr~tvsR~l~~L~~~g~I~~---~~~~i~~i~d~~~L~~~~~~ 215 (222)
T 1ft9_A 167 EEIANLIGSSRQTTSTALNSLIKEGYISR---QGRGHYTIPNLVRLKAAADG 215 (222)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTSSEE---CSTTCEECSSHHHHHHTC--
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHCCcEEE---cCCceEEEcCHHHHHHHHhc
Confidence 68999999998888888999999998642 56665555 88888877753
No 110
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=92.29 E-value=0.43 Score=33.88 Aligned_cols=52 Identities=6% Similarity=0.195 Sum_probs=42.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.+||..++++...+-.-|+.|++.|-+.=. +.++|++|++-........+.+
T Consensus 28 ~~la~~l~vs~~tvs~~l~~Le~~GlV~r~---~~~~v~LT~~G~~~~~~~~~~~ 79 (226)
T 2qq9_A 28 ARIAERLEQSGPTVSQTVARMERDGLVVVA---SDRSLQMTPTGRTLATAVMRKH 79 (226)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEC---TTSBEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEe---CCCCeEECHHHHHHHHHHHHHH
Confidence 589999999999999999999999987653 3488999999877766655543
No 111
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=92.23 E-value=0.22 Score=33.95 Aligned_cols=48 Identities=15% Similarity=0.254 Sum_probs=39.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATF 52 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~f 52 (96)
++||...|++.+.+-.-+++|+++|.|.= ++|+++-+..+.|.++|.+
T Consensus 181 ~~iA~~lG~sr~tvsR~l~~L~~~g~I~~---~~~~i~i~d~~~L~~~a~~ 228 (250)
T 3e6c_C 181 KSIGEITGVHHVTVSRVLASLKRENILDK---KKNKIIVYNLGELKHLSEQ 228 (250)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE---CSSEEEESCHHHHHHHHTS
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHCCCeEe---CCCEEEEecHHHHHHHHcc
Confidence 68999999988888888999999987742 5677777788888888776
No 112
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.15 E-value=0.16 Score=39.30 Aligned_cols=44 Identities=14% Similarity=0.213 Sum_probs=39.4
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~e 44 (96)
|+.+|..||++.+++=+-+..|..+|+|.|.||--.+.|+..+.
T Consensus 350 l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~ 393 (429)
T 4b4t_R 350 LKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRP 393 (429)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCC
Confidence 46799999999999999999999999999999988888988754
No 113
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=92.00 E-value=0.46 Score=34.97 Aligned_cols=54 Identities=19% Similarity=0.285 Sum_probs=46.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.|||..++++...+-..|..|++.|-+.=.-| -|.++|++|++-...+......
T Consensus 178 ~eLa~~l~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~~~~~~~~~ 234 (250)
T 1p4x_A 178 KDLIETIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQLLAQ 234 (250)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHHHHHHHHHH
Confidence 48999999999999999999999999998875 5899999999987766655443
No 114
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=91.91 E-value=0.52 Score=32.09 Aligned_cols=55 Identities=5% Similarity=0.078 Sum_probs=46.0
Q ss_pred hhhhhhh-CCChHHHHHHHHHHHHcCCccEEeeC---CCceEEEcHH------HHHHHHHHHHhh
Q psy11008 2 EDLAALF-RMKTQSVIDRIVELQKTGALTGVIDD---RGKFIYISQE------ELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F-~lktq~vI~RI~eL~~~g~ltGViDD---RGKfIyIs~e------El~~Va~fI~~r 56 (96)
.||+... |++...+-.++++|++.|-++=..++ |..++++|+. .+.+++.|-.+.
T Consensus 43 ~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~~ 107 (131)
T 4a5n_A 43 NEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESN 107 (131)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHH
Confidence 5899999 99999999999999999999988763 4567789987 677777776665
No 115
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=91.90 E-value=1 Score=27.99 Aligned_cols=38 Identities=11% Similarity=0.255 Sum_probs=30.7
Q ss_pred hhhhhhhCC----ChHHHHHHHHHHHHcCCccEEeeCCCceEE
Q psy11008 2 EDLAALFRM----KTQSVIDRIVELQKTGALTGVIDDRGKFIY 40 (96)
Q Consensus 2 edLAa~F~l----ktq~vI~RI~eL~~~g~ltGViDDRGKfIy 40 (96)
.|||..++. +...+-.-|..|++.|-|.=.-|+| .|+|
T Consensus 28 ~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~~r-~~~~ 69 (126)
T 1sd4_A 28 NEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKSEN-IYFY 69 (126)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEE
T ss_pred HHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeCCC-eEEE
Confidence 478888874 6677777799999999999998877 6666
No 116
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=91.78 E-value=0.31 Score=30.31 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=35.5
Q ss_pred hhhhhhhC----CChHHHHHHHHHHHHcCCccEEeeCCCc-eEEEcHHHHHH
Q psy11008 2 EDLAALFR----MKTQSVIDRIVELQKTGALTGVIDDRGK-FIYISQEELNS 48 (96)
Q Consensus 2 edLAa~F~----lktq~vI~RI~eL~~~g~ltGViDDRGK-fIyIs~eEl~~ 48 (96)
.|||..++ ++...+-.-|+.|++.|-+.=.-|||-. |+++|++.-..
T Consensus 28 ~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~ 79 (123)
T 1okr_A 28 NNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIK 79 (123)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHH
T ss_pred HHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHH
Confidence 47888888 6678888889999999999988875432 35677765443
No 117
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=91.72 E-value=0.33 Score=32.93 Aligned_cols=48 Identities=15% Similarity=0.188 Sum_probs=38.2
Q ss_pred hhhhhhhCCCh-HHHHHHHHHHHHcCCccEEeeCCCceEEE-cHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKT-QSVIDRIVELQKTGALTGVIDDRGKFIYI-SQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lkt-q~vI~RI~eL~~~g~ltGViDDRGKfIyI-s~eEl~~Va~fI 53 (96)
+|||...|++. +.+-.-+++|+++|.|.= ++|+ |+| .++.|..+|.|+
T Consensus 173 ~~lA~~lG~sr~etvsR~l~~l~~~glI~~---~~~~-i~I~d~~~L~~~~~~~ 222 (238)
T 2bgc_A 173 QELGYSSGIAHSSAVSRIISKLKQEKVIVY---KNSC-FYVQNLDYLKRYAPKL 222 (238)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHTTSEEE---ETTE-EEESCHHHHHHHCHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHCCCEEe---cCCE-EEEeCHHHHHHHhcCC
Confidence 68999999999 788888999999987642 2444 555 788999998884
No 118
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=91.65 E-value=0.33 Score=31.84 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=35.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVA 50 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va 50 (96)
+|||...|++.+.+-.-+++|+++|.|.= ++|++.-..++.|.++|
T Consensus 143 ~~lA~~lg~sr~tvsR~l~~L~~~g~I~~---~~~~i~i~d~~~L~~~~ 188 (195)
T 3b02_A 143 EEIADATASIRESVSKVLADLRREGLIAT---AYRRVYLLDLAALEREA 188 (195)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHTSEEE---ETTEEEECCHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEEe---cCCEEEEeCHHHHHHHh
Confidence 68999999988888888999999997641 35565455677777765
No 119
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=91.58 E-value=0.26 Score=32.50 Aligned_cols=81 Identities=15% Similarity=0.219 Sum_probs=54.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh-chhchhhhhhhhccccceeHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR-GREELNSVATFIKQKGRVSVSELV 80 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r-gr~~~~~~~~~~~~~GRVsi~eL~ 80 (96)
.+||.+||++..-|.+-++.|+++|-|.-. +|+=.||++...+.+....+.+ -|+.+.+.+.-.... .++..++.
T Consensus 39 ~~La~~~~vSr~tvr~Al~~L~~~G~i~~~---~~~G~~V~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~-~~~~~~l~ 114 (126)
T 3ic7_A 39 REYASIVEVNANTVMRSYEYLQSQEVIYNK---RGIGFFVASGAKMLIHSLRKEQFLKEEVGSFFRQLYTL-GISIKEIE 114 (126)
T ss_dssp TTTTTCC-CCSGGGHHHHHHHHTTTSEEEE---TTTEEEECTTHHHHHHHHHHTTCCCCCSHHHHHHHHHT-TCCHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEEEE---cCCccEEccCcHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHH
Confidence 479999999999999999999999987644 6666777777666665555443 344555555544443 35666666
Q ss_pred Hhcccc
Q psy11008 81 ENSNQL 86 (96)
Q Consensus 81 ~~sN~l 86 (96)
+...++
T Consensus 115 ~l~~~~ 120 (126)
T 3ic7_A 115 KMYYEF 120 (126)
T ss_dssp HHHHTH
T ss_pred HHHHHH
Confidence 654443
No 120
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=91.49 E-value=1.2 Score=28.29 Aligned_cols=54 Identities=15% Similarity=0.310 Sum_probs=42.4
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEEeeC-CC---ceEEEcHHHHHHHHHHHHhh
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGVIDD-RG---KFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGViDD-RG---KfIyIs~eEl~~Va~fI~~r 56 (96)
+|+..++++...+-.-+..|++.|-|+...+. .| |+..||+.-.+.+..+...-
T Consensus 31 ~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~ 88 (108)
T 3l7w_A 31 TIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEW 88 (108)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHH
Confidence 35555799999999999999999999998763 23 46669999888887776554
No 121
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=91.42 E-value=0.43 Score=31.79 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=36.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
+|||...|++.+.+-.-+++|+++|.|. -++|+++-+..+.|.++|.
T Consensus 184 ~~lA~~lg~sr~tvsR~l~~l~~~g~I~---~~~~~i~i~d~~~L~~~~~ 230 (232)
T 2gau_A 184 EELATLSNMTVSNAIRTLSTFVSERMLA---LDGKRIKIIDCDRLQKTAR 230 (232)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHTTSEE---EETTEEEESCHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEe---eCCCEEEEeCHHHHHHHhh
Confidence 6899999999888888899999998764 1355555557777777663
No 122
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=91.30 E-value=0.26 Score=32.83 Aligned_cols=47 Identities=13% Similarity=0.193 Sum_probs=37.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
++||...|++.+.+-.-+++|+++|.|. . ++|++.-...+.|.++|.
T Consensus 179 ~~iA~~lg~sr~tvsR~l~~L~~~g~I~--~-~~~~i~i~d~~~L~~~a~ 225 (231)
T 3e97_A 179 QDIMARTSSSRETVSRVLKRLEAHNILE--V-SPRSVTLLDLAALEALSF 225 (231)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEE--E-CSSCEEESCHHHHHHCC-
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHCCcEE--e-cCCEEEEeCHHHHHHHHh
Confidence 6899999998888888899999998875 2 466666667777777665
No 123
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=91.28 E-value=0.32 Score=30.99 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=32.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~e 44 (96)
.+||..+|++...|-.+|..|+++|.|.=+-...|.|.-.++.
T Consensus 31 ~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~ 73 (81)
T 1qbj_A 31 HDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVST 73 (81)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEESSSSCEEEEC---
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcH
Confidence 5899999999999999999999999996443445666544444
No 124
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.20 E-value=0.76 Score=32.53 Aligned_cols=55 Identities=16% Similarity=0.248 Sum_probs=40.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEE---eeCC--------CceEE-EcHH----HHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGV---IDDR--------GKFIY-ISQE----ELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGV---iDDR--------GKfIy-Is~e----El~~Va~fI~~r 56 (96)
.|||..+|++...|-.+|+.|++.|-|.+. .+-+ .-++| |+.+ .+..++..+.+.
T Consensus 37 ~eLA~~lglS~stv~~~l~~Le~~GlI~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~~~~~~~~~ 107 (192)
T 1uly_A 37 SQLSEILGKTPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVFYINLYLGDEELRYIARSRLKT 107 (192)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSEEEECSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeccccccchhhhcCcceEEEEEecCCchhHHHHHHHHHHHh
Confidence 589999999999999999999999999998 3433 12343 5543 456666666654
No 125
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=91.14 E-value=0.32 Score=35.97 Aligned_cols=44 Identities=27% Similarity=0.467 Sum_probs=39.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELN 47 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~ 47 (96)
.|||..+|++...+-.+++.|++.|-+... .|.+.+++|+.-..
T Consensus 170 ~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~ 213 (244)
T 2wte_A 170 TELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLN 213 (244)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHH
Confidence 589999999999999999999999999886 77889999987655
No 126
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=91.04 E-value=0.87 Score=32.02 Aligned_cols=50 Identities=28% Similarity=0.503 Sum_probs=42.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
.++|..++++...+-..|+.||+.|-+.=..|.|++.+.+|++-..-+..
T Consensus 31 s~aA~~L~isq~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~~l~~~ 80 (230)
T 3cta_A 31 SKLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLDVLYT 80 (230)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHHHHHHH
Confidence 47899999988888899999999887777777789999999987655543
No 127
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=90.86 E-value=0.19 Score=33.67 Aligned_cols=72 Identities=15% Similarity=0.328 Sum_probs=50.1
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceE--EEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFI--YISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSE 78 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfI--yIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~e 78 (96)
++++|..=||+...+.+-|.++...|.-..+ ++ || .+++++...+.+++++.|...|..+-..+. |++|-.+
T Consensus 35 leeIA~~R~L~~~TI~~Hl~~~v~~G~~l~i-~~---~i~~~l~~~~~~~I~~~~~~~~~~~Lk~i~e~l~--~~~sy~e 108 (122)
T 3iuo_A 35 LDDIAVSHGLDFPELLSEVETIVYSGTRINI-DY---FINEVMDEDHLEDIFEYFKESTTDSLEEAMQELG--KDYSEEE 108 (122)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTTCCCCC-HH---HHHHHSCHHHHHHHHHHHHHCSCCCHHHHHHHHT--TTSCHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHcCCccCH-HH---HcccccCHHHHHHHHHHHHHcCcccHHHHHHHcc--CcCCHHH
Confidence 4799999999999999999999999963332 21 21 234999999999999985444444333332 3444433
No 128
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=90.78 E-value=0.21 Score=35.29 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=42.5
Q ss_pred hhhhhhhC--------------CChHHHHHHHHHHHHcCCccEEeeCCCceEE-EcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFR--------------MKTQSVIDRIVELQKTGALTGVIDDRGKFIY-ISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~--------------lktq~vI~RI~eL~~~g~ltGViDDRGKfIy-Is~eEl~~Va~fI~~r 56 (96)
.+||..|| .+..-+..-++.|+++|-|.-. -.+|.||- .++++++.+|..|.+.
T Consensus 71 ~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~-~~~G~~Vt~~~~~~l~~ia~~i~~~ 139 (150)
T 2v7f_A 71 ERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV-PGKGRVITPKGRSFLDKIATELKKE 139 (150)
T ss_dssp HHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEE-TTTEEEECHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEe-CCCceEECCCCHHHHHHHHHHHHHH
Confidence 47999999 9888899999999999999754 35677763 3566788888777654
No 129
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.68 E-value=0.2 Score=38.73 Aligned_cols=41 Identities=24% Similarity=0.379 Sum_probs=37.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
++||..++++..+|=+=+-++...|.|.|-||---..|+|+
T Consensus 311 ~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~ 351 (393)
T 4b4t_O 311 EDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTIS 351 (393)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC-
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEE
Confidence 68999999999998888999999999999999988899886
No 130
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.58 E-value=0.28 Score=34.31 Aligned_cols=43 Identities=16% Similarity=0.434 Sum_probs=37.2
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQ 43 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~ 43 (96)
|+++|..|+++.+++-..+..|..+|.|.|.||.--..+.+.+
T Consensus 359 l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~~ 401 (434)
T 4b4t_Q 359 ISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYE 401 (434)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC-
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeCC
Confidence 3679999999999999999999999999999998777777644
No 131
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=90.54 E-value=1.5 Score=28.52 Aligned_cols=55 Identities=11% Similarity=0.182 Sum_probs=46.3
Q ss_pred hhhhhhh--CCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALF--RMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F--~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.+|+..| .++...+---+..|+++|-|+..-+++-||.-||++--+.+.++..+.
T Consensus 32 ~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~ 88 (99)
T 2co5_A 32 SEILKRFDIDISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFF 88 (99)
T ss_dssp HHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhH
Confidence 4666666 577778888899999999999988777789999999999988887765
No 132
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=90.38 E-value=0.42 Score=29.27 Aligned_cols=39 Identities=8% Similarity=0.063 Sum_probs=32.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~e 44 (96)
.|||..++++...+-..++.|++.|-+.-.- | +.+++++
T Consensus 47 ~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~---g-~y~l~~~ 85 (96)
T 1y0u_A 47 EEIMQTLSLSKKQLDYHLKVLEAGFCIERVG---E-RWVVTDA 85 (96)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---T-EEEECTT
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC---C-EEEECCC
Confidence 5899999999999999999999999997543 5 6677764
No 133
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=90.14 E-value=0.48 Score=30.61 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=43.3
Q ss_pred CCh-HHHHHHHHHHHHcCCccEEeeC----CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhh
Q psy11008 10 MKT-QSVIDRIVELQKTGALTGVIDD----RGKFIYISQEELNSVATFIKQRGREELNSVATFI 68 (96)
Q Consensus 10 lkt-q~vI~RI~eL~~~g~ltGViDD----RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~ 68 (96)
++. ..+-.-+..|++.|-|+-..+. +=|+.+||+.-...+..+...- .+-...+..|+
T Consensus 46 is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~l~~~~~~~-~~~~~~~~~~l 108 (118)
T 2esh_A 46 IGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLYLREILRSL-EDMKRRIETLE 108 (118)
T ss_dssp CCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 777 7788889999999999998753 3478899999998888887665 22333444444
No 134
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=90.07 E-value=0.78 Score=32.46 Aligned_cols=51 Identities=10% Similarity=0.218 Sum_probs=42.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
.+||..++++...+-.-|+.|++.|-++=.-| +.|++|+.-...+......
T Consensus 28 ~~La~~l~vs~~tvs~~l~~Le~~GlV~r~~~---~~v~LT~~G~~~~~~~~~~ 78 (230)
T 1fx7_A 28 ARIAERLDQSGPTVSQTVSRMERDGLLRVAGD---RHLELTEKGRALAIAVMRK 78 (230)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEECTT---SCEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCC---ccEEECHHHHHHHHHHHHH
Confidence 58999999999999999999999999876443 6999999877766555443
No 135
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=90.03 E-value=1.5 Score=29.84 Aligned_cols=54 Identities=13% Similarity=0.156 Sum_probs=43.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccE--EeeCCCc---eEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTG--VIDDRGK---FIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltG--ViDDRGK---fIyIs~eEl~~Va~fI~~r 56 (96)
++||..+|++..+|.+.|+.|++.|-|.= ..|..|+ +++++| =+++++.++.+.
T Consensus 55 ~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~p-L~ekL~~~~~~~ 113 (135)
T 2v79_A 55 NQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQP-LWGKLYEYIQLA 113 (135)
T ss_dssp HHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHH-HHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHH-HHHHHHHHHHHH
Confidence 68999999999999999999999999885 5577675 444443 467788887665
No 136
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=90.00 E-value=0.61 Score=30.92 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=34.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCC-CceEEE-cHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDR-GKFIYI-SQEELNSVA 50 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDR-GKfIyI-s~eEl~~Va 50 (96)
+|||...|++.+.+-.-+++|+++|.| .-+ |+.|.| .++.|.++|
T Consensus 171 ~~lA~~lg~sr~tvsR~l~~l~~~g~I----~~~~~~~i~i~d~~~L~~~~ 217 (220)
T 2fmy_A 171 EEIALMLGTTRQTVSVLLNDFKKMGIL----ERVNQRTLLLKDLQKLKEFS 217 (220)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSE----EESSSSEEEESCHHHHHHHC
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHCCCE----EEcCCCEEEEcCHHHHHHHh
Confidence 689999999988888889999999875 332 345666 777777655
No 137
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=89.91 E-value=0.24 Score=32.51 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=27.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGV 31 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGV 31 (96)
.+||.++|++.+.|-.+|..|+++|.|.-.
T Consensus 34 ~eLAk~LgiSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 34 AQLTRQLNMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHSSSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEeC
Confidence 489999999999999999999999988653
No 138
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.80 E-value=0.3 Score=38.19 Aligned_cols=43 Identities=14% Similarity=0.277 Sum_probs=36.9
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQ 43 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~ 43 (96)
++.||..++++.+++-.-+-+|..+|+|.|.||---..|+...
T Consensus 362 l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~ 404 (445)
T 4b4t_P 362 LLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEK 404 (445)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC--
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECC
Confidence 4689999999999999999999999999999996555787654
No 139
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=89.72 E-value=0.45 Score=30.17 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=26.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI 32 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi 32 (96)
.|||..||+++..|-.-+..|++.|.|.=+-
T Consensus 28 ~EIa~~lgvS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 28 RDIADAAGLSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCcEEecC
Confidence 6899999998877777899999999996544
No 140
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=89.55 E-value=0.3 Score=33.83 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=27.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGV 31 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGV 31 (96)
.|||..||++...+-.+++.|++.|-|..-
T Consensus 28 ~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 28 REIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 589999999999888999999999999653
No 141
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=89.46 E-value=0.66 Score=30.50 Aligned_cols=52 Identities=17% Similarity=0.303 Sum_probs=37.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eCCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DDRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DDRGKfIyIs~eEl~~Va~fI~ 54 (96)
.|||..+++..+.+-.-|..|++.|-+. .- |-|.+.|++|++-...+.+...
T Consensus 56 ~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~DrR~~~v~LT~~G~~~~~~~~~ 110 (148)
T 4fx0_A 56 SELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADARCKRIELTAKGRAALQKAVP 110 (148)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSBC------------CCBCHHHHHHHHHHHH
T ss_pred HHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCCCeeEEEECHHHHHHHHHHHH
Confidence 4899999999999999999999999884 33 4588999999988777666543
No 142
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=89.08 E-value=1.3 Score=29.01 Aligned_cols=73 Identities=12% Similarity=0.238 Sum_probs=44.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHH--HHHHHHHHHhhchhchhhhhhhhccccceeHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEE--LNSVATFIKQRGREELNSVATFIKQKGRVSVSEL 79 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eE--l~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL 79 (96)
.+||.+||++..-|.+-++.|+++|.|.-. +|+=.||++.. ...... ..-|..+.+.+.-+...| ++..++
T Consensus 41 ~~La~~~~vSr~tvr~Al~~L~~~G~i~~~---~g~G~~V~~~~~~~~~~~~---~~~~~~le~~~~~~~~~g-~~~~ei 113 (125)
T 3neu_A 41 REMGVKLAVNPNTVSRAYQELERAGYIYAK---RGMGSFVTSDKALFDQLKK---ELADAITERFLEEAKSIG-LDDQTA 113 (125)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECCCHHHHHHHHH---HHHHHHHHHHHHHHHHTT-CCHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCeEEEe---cCCEEEEecCchhhHHHHH---HHHHHHHHHHHHHHHHcC-CCHHHH
Confidence 489999999999999999999999987543 44445554422 221111 111344555555555443 455555
Q ss_pred HH
Q psy11008 80 VE 81 (96)
Q Consensus 80 ~~ 81 (96)
.+
T Consensus 114 ~~ 115 (125)
T 3neu_A 114 IE 115 (125)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 143
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=89.01 E-value=0.25 Score=31.38 Aligned_cols=30 Identities=7% Similarity=0.184 Sum_probs=25.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGV 31 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGV 31 (96)
+|||.+|+++..-+-.=|..|++.|.|.=+
T Consensus 20 ~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 20 AQISQTLNTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 699999999877777779999999998543
No 144
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=88.95 E-value=1.7 Score=28.24 Aligned_cols=45 Identities=18% Similarity=0.267 Sum_probs=32.8
Q ss_pred hhhhhhhC----CChHHHHHHHHHHHHcCCccEEeeCCCceEE--EcHHHH
Q psy11008 2 EDLAALFR----MKTQSVIDRIVELQKTGALTGVIDDRGKFIY--ISQEEL 46 (96)
Q Consensus 2 edLAa~F~----lktq~vI~RI~eL~~~g~ltGViDDRGKfIy--Is~eEl 46 (96)
.|||..++ ++...|-.-|..|++.|-|.=.-|+|...++ +|+++.
T Consensus 28 ~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 28 RQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 47888887 7777788889999999999998887744443 567664
No 145
>2ba3_A NIKA; dimer, bacterial conjugation, relaxase, DNA binding, ribbon- helix-helix, DNA binding protein; NMR {Plasmid R64}
Probab=88.89 E-value=0.58 Score=26.64 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=23.8
Q ss_pred eEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHh
Q psy11008 38 FIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVEN 82 (96)
Q Consensus 38 fIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~ 82 (96)
-|.+|++|.+.+..+.++. | +|++|++..
T Consensus 19 ~vRlt~eE~~~l~~~A~~~---------------g-~s~SeyiR~ 47 (51)
T 2ba3_A 19 TLRFSPVEDETIRKKAEDS---------------G-LTVSAYIRN 47 (51)
T ss_dssp EEEECHHHHHHHHHHHHHH---------------T-CCHHHHHHH
T ss_pred EEEECHHHHHHHHHHHHHh---------------C-CCHHHHHHH
Confidence 3678999999999999999 5 567777654
No 146
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=88.70 E-value=0.73 Score=30.24 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=33.6
Q ss_pred hhhhhhhCC-ChHHHHHHHHHHHHcCCccEEeeCCCceEE
Q psy11008 2 EDLAALFRM-KTQSVIDRIVELQKTGALTGVIDDRGKFIY 40 (96)
Q Consensus 2 edLAa~F~l-ktq~vI~RI~eL~~~g~ltGViDDRGKfIy 40 (96)
+||+.+|.- ..++..+-|+.|.++|+|. ++-..|+.||
T Consensus 33 ~~L~~~~p~~~~~~r~~aIN~LL~~gkie-l~K~~~~liY 71 (81)
T 2dk8_A 33 QVIQNEMPHIEAQQRAVAINRLLSMGQLD-LLRSNTGLLY 71 (81)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHHTSEE-EEECSSSEEE
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHcCCeE-EEecCCeEEE
Confidence 577788764 8899999999999999999 8888899998
No 147
>2k9i_A Plasmid PRN1, complete sequence; plasmid COPY control protein, ribbon helix helix protein, DNA binding protein; NMR {Sulfolobus islandicus} PDB: 3ft7_A
Probab=88.44 E-value=0.68 Score=25.84 Aligned_cols=29 Identities=21% Similarity=0.380 Sum_probs=25.4
Q ss_pred EEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHhc
Q psy11008 39 IYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVENS 83 (96)
Q Consensus 39 IyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~s 83 (96)
|+|+++.++.+..+.++. |+ |.+++++.+
T Consensus 14 vrl~~el~~~l~~~a~~~---------------g~-s~s~~ir~a 42 (55)
T 2k9i_A 14 VYIPQEWHDRLMEIAKEK---------------NL-TLSDVCRLA 42 (55)
T ss_dssp EEECHHHHHHHHHHHHHH---------------TC-CHHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHh---------------CC-CHHHHHHHH
Confidence 789999999999999999 76 888888754
No 148
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=87.79 E-value=0.62 Score=30.48 Aligned_cols=31 Identities=10% Similarity=0.193 Sum_probs=27.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI 32 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi 32 (96)
.|||.+|+++..-+-.=|..|++.|.|.=+-
T Consensus 20 ~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 20 KQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 6999999998777667799999999998875
No 149
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=87.64 E-value=1.3 Score=30.69 Aligned_cols=50 Identities=28% Similarity=0.323 Sum_probs=39.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEE-EcHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIY-ISQEELNSVATF 52 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy-Is~eEl~~Va~f 52 (96)
.+||.+||++..-|.+-++.|+.+|-+.- .--+|-||- +|.+++..+-..
T Consensus 43 ~~La~~lgVSRtpVREAl~~L~~eGlv~~-~~~~G~~V~~~~~~~~~e~~~~ 93 (222)
T 3ihu_A 43 TDLVAHFGVGRNSVREALQRLAAEGIVDL-QRHRGAVIRRLSLQETLDVLDV 93 (222)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE-CSTTCEEECCCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEE-ecCCCeEEecCCHHHHHHHHHH
Confidence 47999999999999999999999998863 345676664 566766665544
No 150
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=87.39 E-value=0.87 Score=34.29 Aligned_cols=55 Identities=13% Similarity=0.266 Sum_probs=45.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.+||...++....+-.-|..|++.|-|+=.-| -|..+|++|++-.+.+.......
T Consensus 424 ~~l~~~~~~~~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~~~~~~~~~~ 481 (487)
T 1hsj_A 424 KEIAKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLISEL 481 (487)
T ss_dssp HHHHHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHHHHHHHHHHH
Confidence 58999999999988889999999999988764 69999999999877665554443
No 151
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=87.34 E-value=0.58 Score=38.69 Aligned_cols=83 Identities=8% Similarity=0.116 Sum_probs=35.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCC-ccEEeeCCCceEEEcHHHHHHH------HHH-HHhhchhch---hhhhhhhcc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGA-LTGVIDDRGKFIYISQEELNSV------ATF-IKQRGREEL---NSVATFIKQ 70 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~-ltGViDDRGKfIyIs~eEl~~V------a~f-I~~rgr~~~---~~~~~~~~~ 70 (96)
.+||..++++...+-..|+.|.+.+. -.|++.-.|...+++++=...+ +.+ ++.++.+.. ..+..|++.
T Consensus 448 ~~la~~l~~s~~~~~~~L~~L~~~~~~~~glie~~g~~y~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~l~~ 527 (583)
T 3lmm_A 448 DVVARGLQSGKEAARNALEAARQTTVAGAPLIIAHDGVWLLGNACREILRKVEPSPFSPVRYLSTDQAELTNAAMLWLSE 527 (583)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHTCEETTEESEEEETTEEEECHHHHHHHTSCC---------------------------
T ss_pred HHHHHHhCcCHHHHHHHHHHHHhhhccccceEEEeCCEEEECHHHHHHhcccccccccccccccCChhHHHHHHHHHHHH
Confidence 47899999999999999999999431 1355555577788998744433 222 444443321 247789999
Q ss_pred ccceeHHHHHHhcc
Q psy11008 71 KGRVSVSELVENSN 84 (96)
Q Consensus 71 ~GRVsi~eL~~~sN 84 (96)
.|++|.+|+++.|.
T Consensus 528 ~g~it~~di~~l~~ 541 (583)
T 3lmm_A 528 VGDLATSDLMAMCG 541 (583)
T ss_dssp --------------
T ss_pred cCCcCHHHHHHHHC
Confidence 99999999999775
No 152
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=87.15 E-value=0.94 Score=29.06 Aligned_cols=36 Identities=11% Similarity=0.202 Sum_probs=29.5
Q ss_pred hhhhhhhCCChH-HHHHHHHHHHHcCCccEEeeCCCceE
Q psy11008 2 EDLAALFRMKTQ-SVIDRIVELQKTGALTGVIDDRGKFI 39 (96)
Q Consensus 2 edLAa~F~lktq-~vI~RI~eL~~~g~ltGViDDRGKfI 39 (96)
.+||..+|++++ .|-.-+..|+++|-+.-. ++|+-+
T Consensus 29 ~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~~--~~gRP~ 65 (79)
T 1xmk_A 29 LNLAKNIGLTKARDINAVLIDMERQGDVYRQ--GTTPPI 65 (79)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHHHHTTSEEEE--CSSSCE
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHCCCEEec--CCCCCC
Confidence 489999999999 888889999999999732 455444
No 153
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=86.95 E-value=1.3 Score=31.51 Aligned_cols=49 Identities=16% Similarity=0.253 Sum_probs=36.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEE-EcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIY-ISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy-Is~eEl~~Va~ 51 (96)
.+||.+||++..-|.+-++.|+.+|-|.- .--+|-||. ++.+++..+-.
T Consensus 55 ~~La~~lgVSRtpVREAL~~L~~eGlv~~-~~~~G~~V~~~~~~~~~el~e 104 (239)
T 2hs5_A 55 PDICAALDVSRNTVREAFQILIEDRLVAH-ELNRGVFVRVPTAEDITELYI 104 (239)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTTEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEE-eCCCeeEEeCCCHHHHHHHHH
Confidence 48999999999999999999999998863 334565553 35555554443
No 154
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=86.43 E-value=0.86 Score=34.25 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=33.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceE-------EEcHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFI-------YISQEELNS 48 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfI-------yIs~eEl~~ 48 (96)
++||.+|+++..-+-..|+.|++.|.+.-- .+|+.. .++++++..
T Consensus 23 ~eLa~~l~vS~~ti~r~l~~L~~~G~~i~~--~~g~GY~l~~~~~~L~~~eI~~ 74 (321)
T 1bia_A 23 EQLGETLGMSRAAINKHIQTLRDWGVDVFT--VPGKGYSLPEPIQLLNAKQILG 74 (321)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTCCCEE--ETTTEEECSSCCCCCCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhCCCcEEE--ecCCCcEEeeccccCCHHHHHH
Confidence 689999999999999999999999987522 244433 356666654
No 155
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=86.31 E-value=1.1 Score=26.51 Aligned_cols=39 Identities=21% Similarity=0.298 Sum_probs=33.4
Q ss_pred hhhhhhh-----CCChHHHHHHHHHHHHcCCccEEeeCCCceEE
Q psy11008 2 EDLAALF-----RMKTQSVIDRIVELQKTGALTGVIDDRGKFIY 40 (96)
Q Consensus 2 edLAa~F-----~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy 40 (96)
+||+..+ +++..-|-.-++.|++.|.|.-+-.+.|+..|
T Consensus 37 ~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~~~~~y 80 (83)
T 2fu4_A 37 EDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVF 80 (83)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGGGCEEE
T ss_pred HHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCCCceEe
Confidence 5889999 89888888889999999999988877777666
No 156
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=86.24 E-value=1.8 Score=28.53 Aligned_cols=77 Identities=17% Similarity=0.202 Sum_probs=44.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVE 81 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~ 81 (96)
.+||..||++..-|.+-++.|+++|.|.- .--+|-||--+.+++..+..| .-|..+.+.+.-....| .+.+++.+
T Consensus 39 ~~La~~~~vSr~tvr~Al~~L~~~Gli~~-~~g~G~~V~~~~~~~~~~~~~---~~r~~le~~~~~~~~~~-~~~~~l~~ 113 (126)
T 3by6_A 39 RETALQEKINPNTVAKAYKELEAQKVIRT-IPGKGTFITGNTASVKNSNQN---RLLADLSQVIAELIKSG-VKGERIKK 113 (126)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTTEEEECSCHHHHHHHHHH---HHHHHHHHHHHHHHHTT-CCHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEE-ecCCeEEEccCchhhhHhHHH---HHHHHHHHHHHHHHHcC-CCHHHHHH
Confidence 47999999999999999999999998753 233454443334443332111 11223444444443333 45555544
Q ss_pred hc
Q psy11008 82 NS 83 (96)
Q Consensus 82 ~s 83 (96)
..
T Consensus 114 l~ 115 (126)
T 3by6_A 114 IV 115 (126)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 157
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=86.05 E-value=0.87 Score=31.06 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=30.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNS 48 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~ 48 (96)
+|||...|++.+.+-.-+++|+++|.|. + ++|+++-+..+.|.+
T Consensus 197 ~~lA~~lG~sr~tvsR~l~~L~~~GlI~--~-~~~~i~I~d~~~L~~ 240 (243)
T 3la7_A 197 QAIAEAIGSTRVTVTRLLGDLREKKMIS--I-HKKKITVHKPVTLSR 240 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEE--E-ETTEEEECC------
T ss_pred HHHHHHHCCcHHHHHHHHHHHHHCCCEE--E-cCCEEEECCHHHHHh
Confidence 6899999999888888899999999876 2 356655556655544
No 158
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=85.77 E-value=3.9 Score=26.80 Aligned_cols=63 Identities=17% Similarity=0.248 Sum_probs=44.8
Q ss_pred CCChHHHHHHHHHHHHcCCccEEee--CCC---ceEEEcHHHHHHHHHHHHhhchhchhhhhhhhcccc
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVID--DRG---KFIYISQEELNSVATFIKQRGREELNSVATFIKQKG 72 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViD--DRG---KfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~G 72 (96)
+++...+-.-+..|++.|-|+...+ +.| ||..||+.-...+..+...- .+-...+..|+..+|
T Consensus 43 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l~~~~~~~-~~~~~~i~~il~~~~ 110 (116)
T 3hhh_A 43 EIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAELADFWQRW-TLLSKQVNKMKKNGG 110 (116)
T ss_dssp SCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHHHHHHHHH-HHHHHHHHHHHHC--
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHHH-HHHHHHHHHHHCcCC
Confidence 6888888899999999999999874 223 56669999999988888766 233344555555544
No 159
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=85.68 E-value=2.3 Score=27.85 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=29.6
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceE
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFI 39 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfI 39 (96)
+||.+||++..-|.+-++.|+++|-|.-. --+|-||
T Consensus 43 ~La~~~gVSr~tVReAl~~L~~eGlv~~~-~g~G~~V 78 (134)
T 4ham_A 43 EFASRIGVNPNTVSKAYQELERQEVIITV-KGKGTFI 78 (134)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSEEEE-TTTEEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCcEEEE-cCcEEEE
Confidence 79999999999999999999999987633 3345554
No 160
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=85.45 E-value=0.74 Score=30.39 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=37.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee--CCCce---EEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID--DRGKF---IYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD--DRGKf---IyIs~eEl~~Va~fI~~r 56 (96)
++||..++++..+|...|+.|++.|-|+=..| |.|+. ..++ -=+++++.|..+.
T Consensus 55 ~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~~g~~~~~Ydl~-pl~~kL~~~~~~~ 113 (128)
T 2vn2_A 55 AELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDEQGIRNEKYTLE-PLWEKLVHHLYTQ 113 (128)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----------CEECH-HHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECCCCcEEEEEehH-HHHHHHHHHHHHH
Confidence 58999999999999999999999999876443 44653 3333 3466777777554
No 161
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=85.39 E-value=5.4 Score=26.07 Aligned_cols=65 Identities=14% Similarity=0.126 Sum_probs=44.9
Q ss_pred CCChHHHHHHHHHHHHcCCccEEeeC----CC-ceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccce
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVIDD----RG-KFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRV 74 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViDD----RG-KfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRV 74 (96)
+++...+-.-+..|++.|-|+...+. +. ||..||+.-...+..+...- ..-...+..++....+.
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~-~~~~~~i~~il~~~~~~ 110 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKW-DFVSSKINVLKSSNSRW 110 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHH-HHHHHHHHHHHTTC---
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHH-HHHHHHHHHHHcccccC
Confidence 78888888999999999999998752 22 45559999998888887665 22233445555544443
No 162
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=84.93 E-value=2.8 Score=28.47 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=40.3
Q ss_pred CCChHHHHHHHHHHHHcCCccEEeeC-----CCceEEEcHHHHHHHHHHHHhh
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVIDD-----RGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViDD-----RGKfIyIs~eEl~~Va~fI~~r 56 (96)
+++...+-..+..|++.|-|+-..+. +-|+..||+.-...+..+....
T Consensus 73 ~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~ 125 (145)
T 1xma_A 73 VIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKYYKQKCEEW 125 (145)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHHHHHHHHHH
T ss_pred CcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHHHHHHHHHH
Confidence 68888888999999999999988653 4578899999888888877665
No 163
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=84.81 E-value=2.3 Score=30.31 Aligned_cols=50 Identities=12% Similarity=0.224 Sum_probs=37.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~ 54 (96)
.|||..+|++...+-.-++.|++.|-+.-. +.|+| ++++.=+.--..+..
T Consensus 27 ~ela~~~gl~~stv~r~l~~L~~~G~v~~~--~~~~Y-~lg~~~~~l~~~~~~ 76 (249)
T 1mkm_A 27 SEIAEKFNMSVSNAYKYMVVLEEKGFVLRK--KDKRY-VPGYKLIEYGSFVLR 76 (249)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEC--TTSCE-EECTHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEEEC--CCCcE-EECHHHHHHHHHHHh
Confidence 589999999888888889999999999874 44555 778765443334443
No 164
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=84.32 E-value=0.2 Score=33.69 Aligned_cols=55 Identities=15% Similarity=0.347 Sum_probs=40.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEe---eC--CCc----eEEE-----cHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVI---DD--RGK----FIYI-----SQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGVi---DD--RGK----fIyI-----s~eEl~~Va~fI~~r 56 (96)
.+||..||++...|.++++.|++.|-+.+.. |. =|. ++.+ +++++..+...+.+.
T Consensus 31 ~eLa~~lgvSr~~vr~al~~L~~~Gli~~~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~l~~~ 99 (163)
T 2gqq_A 31 VELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKL 99 (163)
T ss_dssp TGGGTSSSCCTTTSSSTHHHHHHHTSEEEEEEEECTTTTTCCCEEEEEEECCCCSTTHHHHHHHHHSSC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEEeCCHHHcCCceEEEEEEEeccCChhHHHHHHHHHHhC
Confidence 5899999999999999999999999998643 21 121 1222 466777777777654
No 165
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=84.10 E-value=2.8 Score=28.59 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=39.2
Q ss_pred CCChHHHHHHHHHHHHcCCccEEeeC-----CCceEEEcHHHHHHHHHHHHhh
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVIDD-----RGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViDD-----RGKfIyIs~eEl~~Va~fI~~r 56 (96)
+++...+-.-++.|++.|-|+...+. +=|+..||+.-...+..++..-
T Consensus 34 ~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~~l~~~~~~~ 86 (179)
T 1yg2_A 34 KASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRSALGEWFDQP 86 (179)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHHHHHHHHHSC
T ss_pred CCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHHHHHHHHhCc
Confidence 78899999999999999999987653 2256789999999999988875
No 166
>3tdu_C Cullin-1, CUL-1; E2:E3, ligase-protein binding complex; 1.50A {Homo sapiens} PDB: 3tdz_C
Probab=83.90 E-value=0.77 Score=29.41 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=36.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
+.|...|..+..++-.+|..|.+.+-|.-.-||+..|.|+.
T Consensus 37 ~ql~~rF~p~~~~IKk~IE~LIereYl~R~~~~~~~y~Y~A 77 (77)
T 3tdu_C 37 TQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 77 (77)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred HHHhCcCCCCHHHHHHHHHHHHhhhHhhcCCCCCceEEEeC
Confidence 45778899999999999999999999999888889999973
No 167
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=83.72 E-value=6.9 Score=26.02 Aligned_cols=49 Identities=14% Similarity=0.264 Sum_probs=39.7
Q ss_pred hCCChHHHHHHHHHHHHcCCccEEeeC---CCc-eEEEcHHHHHHHHHHHHhh
Q psy11008 8 FRMKTQSVIDRIVELQKTGALTGVIDD---RGK-FIYISQEELNSVATFIKQR 56 (96)
Q Consensus 8 F~lktq~vI~RI~eL~~~g~ltGViDD---RGK-fIyIs~eEl~~Va~fI~~r 56 (96)
++++...+---+..|++.|-|+...++ +.| |..||+.-...+..+...-
T Consensus 48 ~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~~ 100 (123)
T 3ri2_A 48 IPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQW 100 (123)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 688888888899999999999988643 344 5559999999888887665
No 168
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=83.35 E-value=1.3 Score=32.05 Aligned_cols=36 Identities=19% Similarity=0.350 Sum_probs=31.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFI 39 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfI 39 (96)
.+||.+||++..-|.+-++.|+++|.|.- --+|-|+
T Consensus 40 ~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~g~Gt~V 75 (248)
T 3f8m_A 40 REIAEQFEVARETVRQALRELLIDGRVER--RGRTTVV 75 (248)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTEEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEe--CCCEEEE
Confidence 48999999999999999999999999976 6666665
No 169
>1iuy_A Cullin-3 homologue; winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.34
Probab=82.75 E-value=1.2 Score=29.39 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=35.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
+.|...|..+...+-.||..|.+.+-|.-.-||+..|.|+.
T Consensus 52 ~ql~~rF~p~~~~IKk~IE~LIereYleR~~~d~~~y~Y~A 92 (92)
T 1iuy_A 52 QQLKARFLPSPVVIKKRIEGLIEREYLARTPEDRKVYTYVA 92 (92)
T ss_dssp HHTCSSCCCCHHHHHHHHHHHHHTTSEEECSSCSSEEEEC-
T ss_pred HHHcCCCCCCHHHHHHHHHHHhhhhhhhcCCCCCCeeEecC
Confidence 35667899999999999999999999998888889999974
No 170
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=82.44 E-value=0.99 Score=28.82 Aligned_cols=28 Identities=18% Similarity=0.469 Sum_probs=25.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCcc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALT 29 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~lt 29 (96)
++.|+.||++.++|.+-++.|++.|-|.
T Consensus 29 ~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 29 EHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 5789999999999999999999999763
No 171
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=82.42 E-value=2.4 Score=32.31 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=24.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCC
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGA 27 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ 27 (96)
++||.+||++...|-+.|+.|++.|-
T Consensus 23 ~eLa~~lgvSr~aV~k~i~~L~~~G~ 48 (323)
T 3rkx_A 23 QSIAESLNISRTAVKKVIDQLKLEGC 48 (323)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999997
No 172
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=81.74 E-value=1.6 Score=26.41 Aligned_cols=54 Identities=17% Similarity=0.127 Sum_probs=35.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCC-ceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRG-KFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRG-KfIyIs~eEl~~Va~fI~~r 56 (96)
.++|..||++...|-.-++...+.|.+. ---.+| +--.+++++...|..++++.
T Consensus 37 ~~ia~~lgis~~Tv~~w~~~~~~~g~~~-~~~~~g~~~~~l~~~~~~~i~~~~~~~ 91 (128)
T 1pdn_C 37 CVISRQLRVSHGCVSKILNRYQETGSIR-PGVIGGSKPRIATPEIENRIEEYKRSS 91 (128)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHCCSS-CCCCSCCCCCSSCSTHHHHHHHTTTTC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhhCCcc-cccCCCCCCCcCCHHHHHHHHHHHHhC
Confidence 4789999998766666677777777542 111124 44467888877787777665
No 173
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=81.59 E-value=1.5 Score=28.51 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=29.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
++||...|++.+.+-.-+++|+++|.|. -.|+.|.|-
T Consensus 171 ~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~ 207 (210)
T 3ryp_A 171 QEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVY 207 (210)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEEE
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHCCcEE----eCCCEEEEE
Confidence 6899999998888888899999998765 344556554
No 174
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=81.50 E-value=1.4 Score=30.46 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=29.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFI 39 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfI 39 (96)
.+||.+||++..-|.+-|+.|+.+|-|.= .--+|-|+
T Consensus 35 ~eLa~~~gVSR~tVReAL~~L~~eGlv~~-~~g~G~~V 71 (239)
T 1hw1_A 35 RELSELIGVTRTTLREVLQRLARDGWLTI-QHGKPTKV 71 (239)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE-ETTEEEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCcEEE-ecCCCcEe
Confidence 48999999999999999999999998763 22344444
No 175
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=81.24 E-value=3.8 Score=30.05 Aligned_cols=48 Identities=21% Similarity=0.352 Sum_probs=41.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee---CCCceEEEcHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID---DRGKFIYISQEELNSV 49 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD---DRGKfIyIs~eEl~~V 49 (96)
.|||..++++...+-.-|+.|++.|-|+=.-| .|-.+||+|++-.+.+
T Consensus 54 ~el~~~l~~~~~t~t~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~~ 104 (250)
T 1p4x_A 54 KKIVSDLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI 104 (250)
T ss_dssp HHHHHHSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred HHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHHH
Confidence 48999999998888888999999999998865 5888999999866543
No 176
>3o2p_E Cell division control protein 53; ligase, cell cycle; 2.23A {Saccharomyces cerevisiae} PDB: 3o6b_B
Probab=80.72 E-value=1.7 Score=28.52 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=34.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
+.|...|..+..++-.||..|.+.+-|.-.=|| ..|.|+.
T Consensus 49 ~ql~~rF~p~~~~IKk~IE~LIekeYleR~~~~-~~y~YlA 88 (88)
T 3o2p_E 49 AQSHQRFNAKVSMVKRAIDSLIQKGYLQRGDDG-ESYAYLA 88 (88)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHTTSEEECTTS-SEEEECC
T ss_pred HHHhccCCCCHHHHHHHHHHHHhhhHHhcCCCC-CeEEeeC
Confidence 457788999999999999999999999887556 9999973
No 177
>2cpg_A REPA protein, transcriptional repressor COPG; DNA-binding protein, plasmid, gene regulation; 1.60A {Streptococcus agalactiae} SCOP: a.43.1.3 PDB: 1b01_A* 1ea4_A*
Probab=80.32 E-value=2.6 Score=22.65 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=24.8
Q ss_pred EEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHhc
Q psy11008 39 IYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVENS 83 (96)
Q Consensus 39 IyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~s 83 (96)
|+++++-++.+-.+.++. |+ |.+++++.+
T Consensus 7 v~l~~~l~~~Ld~~a~~~---------------g~-srS~~ir~a 35 (45)
T 2cpg_A 7 ITLSESVLENLEKMAREM---------------GL-SKSAMISVA 35 (45)
T ss_dssp EEEEHHHHHHHHHHHHHH---------------TC-CHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHHH---------------Cc-CHHHHHHHH
Confidence 789999999999999999 75 888887653
No 178
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=80.06 E-value=4.1 Score=27.02 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=33.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELN 47 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~ 47 (96)
.+||..||++..-|.+-++.|+++|-|.- .+|+=.||++-...
T Consensus 32 ~~La~~~gvSr~tVr~Al~~L~~~Gli~~---~~g~G~~V~~~~~~ 74 (129)
T 2ek5_A 32 NELAAFHRINPATARNGLTLLVEAGILYK---KRGIGMFVSAQAPA 74 (129)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHTTTSEEE---ETTTEEEECTTHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEEE---ecCCEEEEecCchH
Confidence 48999999999999999999999998753 35566666654333
No 179
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=80.03 E-value=2.8 Score=29.94 Aligned_cols=32 Identities=13% Similarity=0.377 Sum_probs=29.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID 33 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD 33 (96)
.|||..+|++...+-..++.|++.|-++..-+
T Consensus 32 ~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 32 SELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 48999999999999999999999999999876
No 180
>2vlg_A Sporulation kinase A; histidine kinase, two-component regulatory system, two-component signal transduction, transferase, phosphorylation, SCOD; 1.7A {Bacillus subtilis}
Probab=79.69 E-value=1.1 Score=27.96 Aligned_cols=23 Identities=35% Similarity=0.641 Sum_probs=16.3
Q ss_pred HHHcCCccEEeeCCCceEEEcHH
Q psy11008 22 LQKTGALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 22 L~~~g~ltGViDDRGKfIyIs~e 44 (96)
|+....+--++|..|+|+|+|+.
T Consensus 5 le~~~d~i~v~d~~G~i~yvn~~ 27 (111)
T 2vlg_A 5 LQTKTDIHAVLASNGRIIYISAN 27 (111)
T ss_dssp ----CCEEEEECTTSBEEEECTT
T ss_pred hhcCCCEEEEEcCCCeEEEEChH
Confidence 45566667789999999999975
No 181
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=79.65 E-value=3.3 Score=24.46 Aligned_cols=39 Identities=21% Similarity=0.398 Sum_probs=30.6
Q ss_pred hhhhhhhC----CChHHHHHHHHHHHHcCCccEEeeCCCceEEE
Q psy11008 2 EDLAALFR----MKTQSVIDRIVELQKTGALTGVIDDRGKFIYI 41 (96)
Q Consensus 2 edLAa~F~----lktq~vI~RI~eL~~~g~ltGViDDRGKfIyI 41 (96)
.|||..++ ++...|-.-|..|++.|.|.=.-|.| .|+|-
T Consensus 27 ~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~gr-~~~y~ 69 (82)
T 1p6r_A 27 NEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKEGR-VFVYT 69 (82)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEETT-EEEEE
T ss_pred HHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEecCC-EEEEE
Confidence 47888886 56777788899999999999876655 67773
No 182
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=79.60 E-value=0.72 Score=28.70 Aligned_cols=37 Identities=19% Similarity=0.364 Sum_probs=29.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFI 39 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfI 39 (96)
.+||..||++..-|-.-++.|++.|-|.-+ -.+|.|+
T Consensus 39 ~eLa~~~~vSr~tvr~al~~L~~~Gli~~~-~g~G~~v 75 (102)
T 1v4r_A 39 ADIRAQFGVAAKTVSRALAVLKSEGLVSSR-GALGTVV 75 (102)
T ss_dssp HHHHHHSSSCTTHHHHHTTTTTTSSCCEEE-TTTEEES
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEe-CCCeEEE
Confidence 589999999999999999999999998643 2245444
No 183
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=79.44 E-value=4.2 Score=27.98 Aligned_cols=49 Identities=16% Similarity=0.301 Sum_probs=36.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEE-EcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIY-ISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy-Is~eEl~~Va~ 51 (96)
.+||..||++..-|.+-++.|+.+|-+.=. --+|-||- +|.+++..+-.
T Consensus 39 ~~La~~lgVSRtpVREAL~~L~~eGlv~~~-~~~G~~V~~~~~~~~~el~e 88 (218)
T 3sxy_A 39 RELSEKLGISFTPVRDALLQLATEGLVKVV-PRVGFFVTDVDEKFIRETIE 88 (218)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTSEEEE-TTTEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEe-CCCceEEcCCCHHHHHHHHH
Confidence 489999999999999999999999988633 34555543 35555554443
No 184
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=79.42 E-value=1.7 Score=28.50 Aligned_cols=40 Identities=13% Similarity=0.204 Sum_probs=30.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~e 44 (96)
++||...|++.+.+-.-+++|+++|.|.= ++|+++-...+
T Consensus 182 ~~lA~~lg~sr~tvsR~l~~l~~~g~I~~---~~~~i~i~d~~ 221 (227)
T 3dkw_A 182 QLVAGHLSIQPETFSRIMHRLGDEGIIHL---DGREISILDRE 221 (227)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHHTSEEE---SSSCEEESCST
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCcEEe---cCCEEEEeCHH
Confidence 68999999988888888999999987752 45554333333
No 185
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=79.02 E-value=2.6 Score=27.25 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=28.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
++||...|++.+.+-.-+++|+++|.|. -+|+.|.|.
T Consensus 168 ~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~ 204 (207)
T 2oz6_A 168 QEIGRIVGCSREMVGRVLKSLEEQGLVH----VKGKTMVVF 204 (207)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEEE
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEE
Confidence 6899999998888888899999998764 234445553
No 186
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=78.79 E-value=2.3 Score=30.55 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=30.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQ 43 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~ 43 (96)
.+||.+||++..-|.+-++.|+++|.|.- -+|+=.|+++
T Consensus 38 ~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~~g~G~~V~~ 76 (243)
T 2wv0_A 38 REYAEQFGISRMTVRQALSNLVNEGLLYR---LKGRGTFVSK 76 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE---CTTSCEEECC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEEE---eCCCeEEEeC
Confidence 48999999999999999999999998763 2444444543
No 187
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=78.71 E-value=1.8 Score=27.35 Aligned_cols=19 Identities=16% Similarity=0.478 Sum_probs=13.8
Q ss_pred hhhccccceeHHHHHHhcc
Q psy11008 66 TFIKQKGRVSVSELVENSN 84 (96)
Q Consensus 66 ~~~~~~GRVsi~eL~~~sN 84 (96)
.+++++|+||++||++.-|
T Consensus 9 ~~L~~~g~vsv~eLa~~l~ 27 (78)
T 1xn7_A 9 DLLALRGRMEAAQISQTLN 27 (78)
T ss_dssp HHHHHSCSBCHHHHHHHTT
T ss_pred HHHHHcCCCcHHHHHHHHC
Confidence 3444449999999998654
No 188
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=78.47 E-value=1.5 Score=32.42 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=32.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccE-EeeCC-----CceEEEcH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTG-VIDDR-----GKFIYISQ 43 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltG-ViDDR-----GKfIyIs~ 43 (96)
.+||..+|++...+-..++.|++.|-+.- .-+.+ -+|.++++
T Consensus 29 ~ELa~~lglS~stVs~hL~~Le~aGLV~~~~~~gr~~GRp~~~Y~Lt~ 76 (232)
T 2qlz_A 29 SLLSSKVSVSSTAVAKHLKIMEREGVLQSYEKEERFIGPTKKYYKISI 76 (232)
T ss_dssp SSSCTTCCCCHHHHHHHHHHHHHTTSEEEEEECC-----CEEEEEECC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEeeecCCCCCCccEEEEEcc
Confidence 47999999999999999999999999988 33333 34555544
No 189
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=78.20 E-value=2 Score=28.00 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=25.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCcc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALT 29 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~lt 29 (96)
.++|++|+.+-+...++++.|-..|+|-
T Consensus 22 GEVAA~f~w~Le~ar~aLeqLf~~G~LR 49 (68)
T 3i71_A 22 GEVAAHFGWPLEKARNALEQLFSAGTLR 49 (68)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCcHHHHHHHHHHHHhcchhh
Confidence 3789999999999999999999999874
No 190
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=77.89 E-value=11 Score=24.41 Aligned_cols=48 Identities=19% Similarity=0.362 Sum_probs=38.6
Q ss_pred CCChHHHHHHHHHHHHcCCccEEee--CCC---ceEEEcHHHHHHHHHHHHhh
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVID--DRG---KFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViD--DRG---KfIyIs~eEl~~Va~fI~~r 56 (96)
+++...+-.-++.|++.|-|+...+ +.| ||..||+.-...+..+...-
T Consensus 39 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~ 91 (115)
T 4esb_A 39 FVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQSW 91 (115)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 5788888899999999999999875 223 45569999998888887665
No 191
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=77.75 E-value=11 Score=23.90 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=40.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
++|+...|+..+.+-.-+..|.+.|.+.=+ ++.+...|++.+-++.+.+-|...
T Consensus 21 ~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~l~~~ 74 (135)
T 2v9v_A 21 QEAATRASLSLEETRKLLQSMAAAGQVTLL-RVENDLYAISTERYQAWWQAVTRA 74 (135)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTCEEEE-EETTEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCcEEEE-ecCCCeEEecHHHHHHHHHHHHHH
Confidence 688999999988888889999999996644 432333389999888776666554
No 192
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=77.70 E-value=2.4 Score=28.51 Aligned_cols=37 Identities=27% Similarity=0.430 Sum_probs=29.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
+|||...|++.+.+-.-+++|+++|.|. + ++|+ |.|-
T Consensus 190 ~~lA~~lG~sr~tvsR~l~~l~~~glI~--~-~~~~-i~I~ 226 (232)
T 1zyb_A 190 DDLARCLDDTRLNISKTLNELQDNGLIE--L-HRKE-ILIP 226 (232)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSCE--E-ETTE-EEES
T ss_pred HHHHHHhCCChhHHHHHHHHHHHCCCEE--e-cCCE-EEEe
Confidence 6899999998888888899999999875 2 2444 5553
No 193
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=77.43 E-value=12 Score=24.13 Aligned_cols=49 Identities=10% Similarity=0.220 Sum_probs=39.4
Q ss_pred hCCChHHHHHHHHHHHHcCCccEEee-----CCCceEEEcHHHHHHHHHHHHhh
Q psy11008 8 FRMKTQSVIDRIVELQKTGALTGVID-----DRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 8 F~lktq~vI~RI~eL~~~g~ltGViD-----DRGKfIyIs~eEl~~Va~fI~~r 56 (96)
++++...+-.-+..|++.|-|+...+ .+=||..||+.-.+.+..+...-
T Consensus 43 ~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~ 96 (116)
T 3f8b_A 43 MELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFESW 96 (116)
T ss_dssp CCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHHH
Confidence 47888888889999999999999864 23356679999988888877655
No 194
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=77.27 E-value=11 Score=23.89 Aligned_cols=42 Identities=5% Similarity=-0.088 Sum_probs=34.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELN 47 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~ 47 (96)
.+||...||+...+-.-+..|++.|-+.=. +|+ .++|++-.+
T Consensus 24 t~La~~~~ls~~~~~~~l~~L~~~GLI~~~---~~~-~~LT~kG~~ 65 (95)
T 1r7j_A 24 TRIMYGANLSYALTGRYIKMLMDLEIIRQE---GKQ-YMLTKKGEE 65 (95)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTE-EEECHHHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHCCCeEEE---CCe-eEEChhHHH
Confidence 378999999999999999999999988643 344 679998764
No 195
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=77.09 E-value=7.4 Score=27.65 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=26.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTG 30 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltG 30 (96)
.+||..||++..-|.+-++.|+.+|.+.-
T Consensus 53 ~~La~~lgVSr~~VReAL~~L~~~Glv~~ 81 (237)
T 3c7j_A 53 QELATLFGVSRMPVREALRQLEAQSLLRV 81 (237)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 58999999999999999999999998763
No 196
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=77.06 E-value=3.5 Score=26.35 Aligned_cols=52 Identities=8% Similarity=0.237 Sum_probs=35.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEE-EcHHH--HHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIY-ISQEE--LNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy-Is~eE--l~~Va~fI 53 (96)
++||..++++..-+-+-++.|.+.|-+..+-...|.|.- -.+++ +..|...+
T Consensus 30 ~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~itl~di~~~~ 84 (129)
T 2y75_A 30 KSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDAITAGDIIRVL 84 (129)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESSCGGGCBHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHHCcHHHHHHHH
Confidence 589999999999888889999999998766544455554 33455 33344444
No 197
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=76.91 E-value=4.3 Score=26.55 Aligned_cols=58 Identities=5% Similarity=0.079 Sum_probs=41.1
Q ss_pred CChHHHHHHHHHHHHcCCccEEee--C--CC-ceEEEcHHHHHHHHHHHHhhchhchhhhhhhh
Q psy11008 10 MKTQSVIDRIVELQKTGALTGVID--D--RG-KFIYISQEELNSVATFIKQRGREELNSVATFI 68 (96)
Q Consensus 10 lktq~vI~RI~eL~~~g~ltGViD--D--RG-KfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~ 68 (96)
++...+-.-++.|++.|-++...+ + +. |+..||++-...+..++..- .+-...+..|+
T Consensus 45 i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~~~~-~~~~~~i~~~l 107 (117)
T 3elk_A 45 LPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHSQAL-QLARKIIDDLL 107 (117)
T ss_dssp CCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTSTTH-HHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 777778888999999999998875 2 23 45559999998888876554 22234444454
No 198
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=76.67 E-value=6.6 Score=29.56 Aligned_cols=82 Identities=11% Similarity=0.146 Sum_probs=58.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHH----cCCccEEeeCCCceEEEcHHHHHH-HHHHHHhhchhchhhhh----hhhcccc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQK----TGALTGVIDDRGKFIYISQEELNS-VATFIKQRGREELNSVA----TFIKQKG 72 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~----~g~ltGViDDRGKfIyIs~eEl~~-Va~fI~~rgr~~~~~~~----~~~~~~G 72 (96)
++||..+++...++-+-|.+|.+ .|+=.=+.--.|.|-+.|..|+.. |.+|..+.....|+..+ ..|..++
T Consensus 34 ~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~~~~~~~Ls~aaLEtLaiIAy~Q 113 (219)
T 2z99_A 34 DALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLLDGARTKLTRAALETLAVVAYRQ 113 (219)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhcccccCccCHHHHHHHHHHHHcC
Confidence 68999999998888888888865 344333555678888888888754 45566543334566555 5788889
Q ss_pred ceeHHHHHHhc
Q psy11008 73 RVSVSELVENS 83 (96)
Q Consensus 73 RVsi~eL~~~s 83 (96)
-||..||.+..
T Consensus 114 PITR~eI~~ir 124 (219)
T 2z99_A 114 PVTRARVSAVR 124 (219)
T ss_dssp SEEHHHHHHHH
T ss_pred CcCHHHHHHHH
Confidence 99999998753
No 199
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=76.63 E-value=2.4 Score=29.76 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=28.7
Q ss_pred hhhhhhh-----CCChHHHHHH-HHHHHHcCCccEEeeCCCceEEEcHHH
Q psy11008 2 EDLAALF-----RMKTQSVIDR-IVELQKTGALTGVIDDRGKFIYISQEE 45 (96)
Q Consensus 2 edLAa~F-----~lktq~vI~R-I~eL~~~g~ltGViDDRGKfIyIs~eE 45 (96)
+||+..| ++ ||..|.| |++| | +.=|-+..|+|+|.-+++
T Consensus 23 ~eL~~~L~~~G~~V-tqaTisRDL~eL---~-~vKv~~~~g~~~Y~lp~~ 67 (149)
T 1b4a_A 23 DELVDRLREAGFNV-TQATVSRDIKEM---Q-LVKVPMANGRYKYSLPSD 67 (149)
T ss_dssp HHHHHHHHHTTCCC-CHHHHHHHHHHT---T-CEEEECSSSCEEEECTTC
T ss_pred HHHHHHHHHcCCCc-CHHHHHHHHHHc---C-CeEEECCCCCEEEEeCCC
Confidence 5778887 65 7888877 5555 3 345667789999999775
No 200
>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}
Probab=76.51 E-value=0.43 Score=33.69 Aligned_cols=15 Identities=20% Similarity=0.463 Sum_probs=13.9
Q ss_pred EEcHHHHHHHHHHHH
Q psy11008 40 YISQEELNSVATFIK 54 (96)
Q Consensus 40 yIs~eEl~~Va~fI~ 54 (96)
|||.+|+++|-+|++
T Consensus 9 ~IT~eEF~sIPkYmr 23 (130)
T 2lyc_A 9 QITDEEFKTIPKYQL 23 (130)
T ss_dssp CCCHHHHTTSCHHHH
T ss_pred eecHHHHhccCHHHH
Confidence 899999999999986
No 201
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=76.29 E-value=3 Score=29.76 Aligned_cols=38 Identities=29% Similarity=0.501 Sum_probs=30.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
.+||.+||++..-|.+-++.|+++|.|.-. +|+=.|++
T Consensus 33 ~~La~~~~vSr~tvr~Al~~L~~~g~i~~~---~g~G~~V~ 70 (239)
T 3bwg_A 33 ETLMAQFEVSKSTITKSLELLEQKGAIFQV---RGSGIFVR 70 (239)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEEC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCcEEEe---CCceEEEe
Confidence 489999999999999999999999998642 44444444
No 202
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=75.59 E-value=7.8 Score=25.13 Aligned_cols=49 Identities=18% Similarity=0.277 Sum_probs=40.0
Q ss_pred hCCChHHHHHHHHHHHHcCCccEEeeCC---C---ceEEEcHHHHHHHHHHHHhh
Q psy11008 8 FRMKTQSVIDRIVELQKTGALTGVIDDR---G---KFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 8 F~lktq~vI~RI~eL~~~g~ltGViDDR---G---KfIyIs~eEl~~Va~fI~~r 56 (96)
++++...+---+..|++.|-|+...++. | |+..||++-...+..++..-
T Consensus 52 ~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~ 106 (115)
T 2dql_A 52 YRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARLW 106 (115)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 4688888889999999999999987542 3 79999999888888777554
No 203
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=75.41 E-value=7.4 Score=27.95 Aligned_cols=50 Identities=16% Similarity=0.172 Sum_probs=37.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~ 54 (96)
.|||..+|+....+-.-++.|++.|-+.- |.+| ...+++.=+.--..+..
T Consensus 42 ~eia~~~gl~kstv~r~l~tL~~~G~v~~--~~~~-~Y~lg~~~~~lg~~~~~ 91 (260)
T 2o0y_A 42 KELVEGTKLPKTTVVRLVATMCARSVLTS--RADG-SYSLGPEMLRWVRLAGR 91 (260)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHTTSEEE--CTTS-CEEECHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEE--CCCC-eEEecHHHHHHHHHHHc
Confidence 68999999988888888999999999976 5667 44677765443333433
No 204
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=75.01 E-value=2.2 Score=27.81 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=14.8
Q ss_pred hhhhhccccceeHHHHHHhcc
Q psy11008 64 VATFIKQKGRVSVSELVENSN 84 (96)
Q Consensus 64 ~~~~~~~~GRVsi~eL~~~sN 84 (96)
+..+|+++|+||++||++.-|
T Consensus 7 Il~~L~~~g~vsv~eLA~~l~ 27 (87)
T 2k02_A 7 VRDMLALQGRMEAKQLSARLQ 27 (87)
T ss_dssp HHHHHHHSCSEEHHHHHHHTT
T ss_pred HHHHHHHcCCCcHHHHHHHHC
Confidence 334444449999999998654
No 205
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=74.66 E-value=7.4 Score=24.96 Aligned_cols=52 Identities=15% Similarity=0.229 Sum_probs=36.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeC--CCc-eEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDD--RGK-FIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDD--RGK-fIyIs~eEl~~Va~fI~~r 56 (96)
.++|..||++..-|-.-++...+.|.+ .+. +|+ --.++++....|..++++.
T Consensus 52 ~~iA~~lgis~~TV~rw~~~~~~~G~~---~~~~r~gr~~~~~~~~~~~~I~~~~~~~ 106 (149)
T 1k78_A 52 CDISRQLRVSHGCVSKILGRYYETGSI---KPGVIGGSKPKVATPKVVEKIAEYKRQN 106 (149)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHSCC---CCCCCCCCCCSSSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHcCCC---CccCCCCCCCCCCCHHHHHHHHHHHHhC
Confidence 478999999877766667778877753 221 232 3346888888999998776
No 206
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=74.46 E-value=3.9 Score=30.11 Aligned_cols=59 Identities=10% Similarity=0.182 Sum_probs=43.8
Q ss_pred CChHHHHHHHHHHHHcCCccEEee-CCCce-EEEcHHHHHH----HHHHHHhhchhchhhhhhhhccccceeHHHHHHhc
Q psy11008 10 MKTQSVIDRIVELQKTGALTGVID-DRGKF-IYISQEELNS----VATFIKQRGREELNSVATFIKQKGRVSVSELVENS 83 (96)
Q Consensus 10 lktq~vI~RI~eL~~~g~ltGViD-DRGKf-IyIs~eEl~~----Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~s 83 (96)
++++|+..-++.|+.-|.-.-++. +.|++ |.-.+.|++. |.+++... |.||.++|+++-
T Consensus 114 VSp~Dl~~A~~~l~~Lg~~~~l~~~~sg~~vvqs~~~~~~~~~~~il~~~~~~---------------g~vt~~~la~~l 178 (218)
T 3cuq_B 114 LSPEDLVNACKMLEALKLPLRLRVFDSGVMVIELQSHKEEEMVASALETVSEK---------------GSLTSEEFAKLV 178 (218)
T ss_dssp CCHHHHHHHHHTTTTTTCSEEEEECTTSBEEEEETTCCGGGGHHHHHHHHHHT---------------SCBCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEECCCcEEEEcCCCchHHHHHHHHHHHHHC---------------CCcCHHHHHHHh
Confidence 889999999999999987667777 55774 5555656544 44444444 999999999764
No 207
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=73.87 E-value=3.2 Score=27.28 Aligned_cols=28 Identities=25% Similarity=0.283 Sum_probs=25.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCcc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALT 29 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~lt 29 (96)
+|||...|++.+.+-.-+++|+++|.|.
T Consensus 191 ~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 191 QELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 6899999998888888899999998775
No 208
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=73.34 E-value=8.3 Score=28.53 Aligned_cols=53 Identities=8% Similarity=0.088 Sum_probs=41.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhchh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGRE 59 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rgr~ 59 (96)
-|||..++++...|-+-++.|.+.|-++ .+. +.|++|++-.+ +|.-+..+=|+
T Consensus 34 ~~LA~~LgvS~~SV~~~lkkL~e~GLV~--~~~--~Gv~LTe~G~~-~A~~i~~rhr~ 86 (200)
T 2p8t_A 34 KQISERLELGEGSVRTLLRKLSHLDIIR--SKQ--RGHFLTLKGKE-IRDKLLSMFSE 86 (200)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEE--EC----CEEECHHHHH-HHHHHHTTBCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEE--EeC--CCeEECHHHHH-HHHHHHHHHHH
Confidence 3899999999999999999999999874 333 79999998765 56666666443
No 209
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=73.22 E-value=2.1 Score=25.06 Aligned_cols=29 Identities=14% Similarity=0.259 Sum_probs=20.0
Q ss_pred HcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 24 KTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 24 ~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
..|. |.|-.-+. -+|++|+.+|+.||...
T Consensus 49 ~~G~--~~Mp~~~~--~Lsd~ei~~l~~yi~~~ 77 (78)
T 1gks_A 49 LAGK--GAMPAYDG--RADREDLVKAIEYMLST 77 (78)
T ss_dssp HHCB--TTBCCCBT--TBCHHHHHHHHHHHHTT
T ss_pred HcCC--CCCCCCCC--CCCHHHHHHHHHHHHhh
Confidence 4453 44544332 27999999999999864
No 210
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=72.16 E-value=7.3 Score=21.59 Aligned_cols=35 Identities=17% Similarity=0.399 Sum_probs=25.4
Q ss_pred hhhhhhh-----CCChHHHHHHHHHHHHcCCccEEeeCCCceEE
Q psy11008 2 EDLAALF-----RMKTQSVIDRIVELQKTGALTGVIDDRGKFIY 40 (96)
Q Consensus 2 edLAa~F-----~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy 40 (96)
+||+..| +++..-|-.-++ +.|.+ .+-.+.|.+.|
T Consensus 23 ~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v-~~~~~~~~~~Y 62 (64)
T 2p5k_A 23 DELVDMLKQDGYKVTQATVSRDIK---ELHLV-KVPTNNGSYKY 62 (64)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHH---HHTCE-EEEETTTEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHH---HcCCE-EEecCCCceee
Confidence 5888899 886554444344 66888 88888888777
No 211
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=72.12 E-value=4.2 Score=28.07 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=29.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
++||...|++.+.+-.-+++|+++|.|. -.|+-|.|-
T Consensus 221 ~~lA~~lG~sr~tvsR~l~~L~~~GlI~----~~~~~i~I~ 257 (260)
T 3kcc_A 221 QEIGQIVGCSRETVGRILKMLEDQNLIS----AHGKTIVVY 257 (260)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSEEEEC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCEE----EcCCEEEEE
Confidence 6899999998888888899999998664 345566664
No 212
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=72.10 E-value=4.5 Score=26.27 Aligned_cols=29 Identities=17% Similarity=0.354 Sum_probs=25.4
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEE
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGV 31 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGV 31 (96)
+||.+||++.+++=.-+-.|++.|.+.-+
T Consensus 34 ~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 34 SLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 79999999998866668999999998766
No 213
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=72.08 E-value=2.8 Score=29.24 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=30.6
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEE-eeC--CCceEE
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGV-IDD--RGKFIY 40 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGV-iDD--RGKfIy 40 (96)
+||..||++..-|.+-++.|+.+|-+.=- .-- +|-||-
T Consensus 33 ~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~ 73 (239)
T 2di3_A 33 ALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIIT 73 (239)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEEC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceee
Confidence 89999999999999999999999987520 334 566663
No 214
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=71.75 E-value=3.7 Score=22.24 Aligned_cols=22 Identities=14% Similarity=0.288 Sum_probs=18.2
Q ss_pred ChhhhhhhCCChHHHHHHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVEL 22 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL 22 (96)
+.+||.++|++..++++.++++
T Consensus 5 v~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 5 IKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp TTHHHHHHSSSHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHc
Confidence 3589999999999998877654
No 215
>2do7_A Cullin-4B, CUL-4B; helix-turn-helix motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.32 E-value=4.1 Score=27.34 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=32.5
Q ss_pred hCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 8 FRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 8 F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
|..+...+-.||+.|.+.+-|.-.-||+..|+|+.
T Consensus 61 F~p~~~~IKk~IE~LIereYleR~~~d~~~y~YlA 95 (101)
T 2do7_A 61 FPVKPADLKKRIESLIDRDYMERDKENPNQYNYIA 95 (101)
T ss_dssp SCCCHHHHHHHHHHHHHTTSEEECSSCTTEEEECC
T ss_pred CCCCHHHHHHHHHHHhhhhHHhcCCCCCCeEEEec
Confidence 88899999999999999999999888999999985
No 216
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=70.03 E-value=2.9 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.544 Sum_probs=15.4
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 71 ~ls~~ei~~l~~yl~~l 87 (93)
T 3dr0_A 71 RLSDADIANVAAYIADQ 87 (93)
T ss_dssp TBCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 37999999999999876
No 217
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=69.87 E-value=8.2 Score=23.89 Aligned_cols=50 Identities=6% Similarity=0.015 Sum_probs=34.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.++|..||++..-|-.-++...+.|... ..|+---+|+++...+..+ ...
T Consensus 26 ~~ia~~lgis~~Tv~r~~~~~~~~g~~~----~~gr~~~l~~~~~~~i~~~-~~~ 75 (141)
T 1u78_A 26 HEMSRKISRSRHCIRVYLKDPVSYGTSK----RAPRRKALSVRDERNVIRA-ASN 75 (141)
T ss_dssp HHHHHHHTCCHHHHHHHHHSGGGTTCCC----CCCCCCSSCHHHHHHHHHH-HHH
T ss_pred HHHHHHHCcCHHHHHHHHHcccccCCcC----CCCCCCcCCHHHHHHHHHH-HhC
Confidence 4789999997776666666666655432 2565555788888888777 444
No 218
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=69.67 E-value=4.9 Score=28.72 Aligned_cols=39 Identities=13% Similarity=0.259 Sum_probs=31.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQ 43 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~ 43 (96)
.+||.+||++..-|.+-++.|+++|.|.-. +||=.|+++
T Consensus 37 ~~La~~~~vSr~tvr~Al~~L~~~G~i~~~---~g~G~~V~~ 75 (236)
T 3edp_A 37 TALQEIYSSSRTTIRRAVDLLVEEGLVVRK---NGVGLYVQP 75 (236)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEE---TTTEEEECC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEE---CCceEEEcc
Confidence 489999999999999999999999997653 555555544
No 219
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=69.61 E-value=2.6 Score=23.99 Aligned_cols=17 Identities=35% Similarity=0.497 Sum_probs=14.7
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 70 ~ls~~ei~~l~~yl~sl 86 (87)
T 2zxy_A 70 GLSDAELKALADFILSH 86 (87)
T ss_dssp GCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 47999999999999753
No 220
>1k9u_A Polcalcin PHL P 7; pollen allergen, calcium-binding, EF-hand, cross-reactivity; 1.75A {Phleum pratense} SCOP: a.39.1.10
Probab=69.58 E-value=8.3 Score=21.32 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=30.8
Q ss_pred EEcHHHHHHHHHHHHhhchhchhhhhhhh--ccccceeHHHHHHhcccc
Q psy11008 40 YISQEELNSVATFIKQRGREELNSVATFI--KQKGRVSVSELVENSNQL 86 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~rgr~~~~~~~~~~--~~~GRVsi~eL~~~sN~l 86 (96)
+||.+|+..+..-+..-..+++..+-..+ ...|+|+..|+.....+.
T Consensus 19 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~~ 67 (78)
T 1k9u_A 19 KISLSELTDALRTLGSTSADEVQRMMAEIDTDGDGFIDFNEFISFCNAN 67 (78)
T ss_dssp EECHHHHHHHHHHHHTCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHhCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHC
Confidence 68899988776655422334455544443 357999999998765543
No 221
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=69.45 E-value=2.7 Score=24.15 Aligned_cols=39 Identities=23% Similarity=0.433 Sum_probs=25.1
Q ss_pred CChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 10 MKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 10 lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
++.+.+...| ..|. +.|-.-++ .+|++|+.+|+.||...
T Consensus 44 ~~~~~l~~~i----~~g~--~~Mp~~~~--~ls~~ei~~l~~yl~~~ 82 (88)
T 3dmi_A 44 RTEKSIISQV----TGGK--NAMPAFGG--RLSDEEIANVAAYVLAS 82 (88)
T ss_dssp SSHHHHHHHH----HHCB--TTBCCCTT--TSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHH----HcCc--CCCCCcCC--CCCHHHHHHHHHHHHHH
Confidence 3444454444 3343 34444333 48999999999999876
No 222
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=69.05 E-value=2.8 Score=24.32 Aligned_cols=17 Identities=6% Similarity=0.241 Sum_probs=15.1
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
-+|++|+.+|+.||.+.
T Consensus 67 ~ls~~ei~~l~~yi~~~ 83 (85)
T 3cu4_A 67 MIPPADALKIGEYVVAS 83 (85)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 37999999999999875
No 223
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=68.38 E-value=3.1 Score=24.04 Aligned_cols=17 Identities=18% Similarity=0.296 Sum_probs=15.4
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 63 ~Lsd~ei~~l~~yl~~l 79 (80)
T 1ayg_A 63 NVTDAEAKQLAQWILSI 79 (80)
T ss_dssp CCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 79999999999999864
No 224
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=68.08 E-value=4.7 Score=28.85 Aligned_cols=39 Identities=23% Similarity=0.412 Sum_probs=32.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~e 44 (96)
.|||..+|++...+-.-++.|++.|-+.- |+ |+| .+++.
T Consensus 33 ~eia~~~gl~~stv~r~l~~L~~~G~v~~--~~-~~Y-~Lg~~ 71 (257)
T 2g7u_A 33 AELATEAGLSRPAVRRILLTLQKLGYVAG--SG-GRW-SLTPR 71 (257)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ET-TEE-EECGG
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEe--CC-CEE-EEcHH
Confidence 58999999988888888999999999986 43 555 56665
No 225
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=67.65 E-value=3 Score=24.14 Aligned_cols=16 Identities=25% Similarity=0.536 Sum_probs=14.1
Q ss_pred EEcHHHHHHHHHHHHh
Q psy11008 40 YISQEELNSVATFIKQ 55 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~ 55 (96)
.+|++|+.+|+.||++
T Consensus 63 ~Ls~~ei~~l~~Yl~s 78 (79)
T 1c53_A 63 RYSDEEMKAMADYMSK 78 (79)
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4899999999999975
No 226
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=66.92 E-value=3.2 Score=23.56 Aligned_cols=17 Identities=12% Similarity=0.436 Sum_probs=15.5
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 64 ~ls~~ei~~l~~yl~~~ 80 (85)
T 1gdv_A 64 RLVDEDIEDAANYVLSQ 80 (85)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 48999999999999876
No 227
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=66.60 E-value=3.3 Score=23.57 Aligned_cols=16 Identities=13% Similarity=0.586 Sum_probs=15.0
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+.+|+.||...
T Consensus 66 ls~~ei~~l~~yl~~~ 81 (86)
T 3ph2_B 66 LTDDQIAAVAAYVLDQ 81 (86)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7999999999999876
No 228
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=66.51 E-value=17 Score=25.83 Aligned_cols=82 Identities=13% Similarity=0.242 Sum_probs=56.4
Q ss_pred hhhhhhhC--CChHHHHHHHHHHHH----cCCccEEeeCCCceEEEcHHHHHH-HHHHHHhhchhchhhhh----hhhcc
Q psy11008 2 EDLAALFR--MKTQSVIDRIVELQK----TGALTGVIDDRGKFIYISQEELNS-VATFIKQRGREELNSVA----TFIKQ 70 (96)
Q Consensus 2 edLAa~F~--lktq~vI~RI~eL~~----~g~ltGViDDRGKfIyIs~eEl~~-Va~fI~~rgr~~~~~~~----~~~~~ 70 (96)
++||..++ ++..++-+-|.+|.+ .|+=-=+.--.|.|-+.|..|+.. |..|........|+..| ..|..
T Consensus 26 ~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~~~~~~~~~LS~aaLEtLaiIay 105 (162)
T 1t6s_A 26 QTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQLLAPVIQRRLSRSMLEVLAVVAW 105 (162)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhcccccCccCHHHHHHHHHHHH
Confidence 68999999 888888888888865 244333455678888888888754 44555433223455444 56788
Q ss_pred ccceeHHHHHHhc
Q psy11008 71 KGRVSVSELVENS 83 (96)
Q Consensus 71 ~GRVsi~eL~~~s 83 (96)
++-||.+||.+..
T Consensus 106 ~qPiTR~eI~~ir 118 (162)
T 1t6s_A 106 HQPVTKGEIQQIR 118 (162)
T ss_dssp HCSEEHHHHHHHH
T ss_pred cCCcCHHHHHHHH
Confidence 8999999998753
No 229
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=66.44 E-value=5.4 Score=28.74 Aligned_cols=43 Identities=23% Similarity=0.332 Sum_probs=34.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCC-CceEEEcHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDR-GKFIYISQEELN 47 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDR-GKfIyIs~eEl~ 47 (96)
.|||...||....+-..++.|++.|-+.- |.. |+| .+++.=+.
T Consensus 25 ~eia~~lgl~ksT~~RlL~tL~~~G~v~~--~~~~~~Y-~lG~~~~~ 68 (260)
T 3r4k_A 25 SDLTRLSGMNKATVYRLMSELQEAGFVEQ--VEGARSY-RLGPQVLR 68 (260)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHTTSEEE--CSSSSEE-EECTTHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEE--cCCCCcE-EcCHHHHH
Confidence 58999999999999999999999999974 554 665 56665443
No 230
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=66.43 E-value=3.1 Score=23.58 Aligned_cols=17 Identities=18% Similarity=0.370 Sum_probs=14.9
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 54 ~ls~~ei~~l~~yl~~~ 70 (71)
T 1c75_A 54 IAKGAEAEAVAAWLAEK 70 (71)
T ss_dssp SSCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 47999999999999864
No 231
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=65.92 E-value=12 Score=24.74 Aligned_cols=45 Identities=18% Similarity=0.221 Sum_probs=35.9
Q ss_pred hhhhh-hhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHH
Q psy11008 2 EDLAA-LFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVA 50 (96)
Q Consensus 2 edLAa-~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va 50 (96)
.|||. ..+|....+-.-|+-|+..|-+. -|.++ +.+|++-...+.
T Consensus 34 ~~Lae~~l~~drstvsrnl~~L~r~GlVe--~~~~D--l~LT~~G~~~l~ 79 (95)
T 1bja_A 34 AEVREVHPDLGNAVVNSNIGVLIKKGLVE--KSGDG--LIITGEAQDIIS 79 (95)
T ss_dssp HHHHHTCTTSCHHHHHHHHHHHHTTTSEE--EETTE--EEECHHHHHHHH
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHCCCee--cCCCC--eeeCHhHHHHHH
Confidence 57899 88998877777799999999999 54444 889988766553
No 232
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=65.70 E-value=3.2 Score=25.31 Aligned_cols=48 Identities=15% Similarity=0.162 Sum_probs=29.3
Q ss_pred EEcHHHHHHHHHHHHhhchhchhhhhhhh--ccccceeHHHHHHhccccee
Q psy11008 40 YISQEELNSVATFIKQRGREELNSVATFI--KQKGRVSVSELVENSNQLVT 88 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~rgr~~~~~~~~~~--~~~GRVsi~eL~~~sN~lI~ 88 (96)
+||.+|+..+..-+. -..++++.+-.-+ ...|+||..|++....++..
T Consensus 114 ~i~~~E~~~~l~~~~-~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~~ 163 (166)
T 3akb_A 114 AVTVADTARALTAFG-VPEDLARQAAAALDTDGDGKVGETEIVPAFARYFT 163 (166)
T ss_dssp CCBHHHHHHHHHHTT-CCHHHHHHHHHHHCTTCSSBCCHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHHHHhC-CCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhc
Confidence 588888877654432 2233334333333 35799999999887665544
No 233
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=65.60 E-value=3.5 Score=23.54 Aligned_cols=17 Identities=18% Similarity=0.431 Sum_probs=15.2
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 2exv_A 65 AVSDDEAQTLAKWVLSQ 81 (82)
T ss_dssp CCCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 78999999999999753
No 234
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=65.28 E-value=2.4 Score=24.90 Aligned_cols=17 Identities=12% Similarity=0.323 Sum_probs=14.8
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 64 ~Lsd~ei~~l~~Yi~~~ 80 (81)
T 1kx2_A 64 DCTDEDYKAAIEFMSKA 80 (81)
T ss_dssp SCCHHHHHHHHHHHTSC
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 48999999999999753
No 235
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=64.97 E-value=3.7 Score=23.61 Aligned_cols=17 Identities=18% Similarity=0.421 Sum_probs=15.3
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||+..
T Consensus 68 ~ls~~ei~~l~~yl~~~ 84 (89)
T 1f1f_A 68 RLSPLQIEDVAAYVVDQ 84 (89)
T ss_dssp TSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 37999999999999876
No 236
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=64.60 E-value=3.7 Score=25.25 Aligned_cols=16 Identities=6% Similarity=0.260 Sum_probs=14.7
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+.+|+.||.+.
T Consensus 82 Lsd~ei~~l~~Yi~~~ 97 (99)
T 3dp5_A 82 IPPADALKIGEYVVAS 97 (99)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8999999999999864
No 237
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=64.36 E-value=4.2 Score=23.11 Aligned_cols=17 Identities=18% Similarity=0.294 Sum_probs=15.2
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 65 ~ls~~ei~~l~~yl~~l 81 (82)
T 1cch_A 65 PVTEEEAKILAEWVLSL 81 (82)
T ss_dssp SCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 78999999999999863
No 238
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=64.06 E-value=3.1 Score=23.99 Aligned_cols=17 Identities=18% Similarity=0.309 Sum_probs=15.0
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 64 ~Ls~~ei~~l~~yl~~l 80 (81)
T 1a56_A 64 NVSDADAKALADWILTL 80 (81)
T ss_dssp SSSSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 47999999999999864
No 239
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=63.94 E-value=3.9 Score=23.86 Aligned_cols=16 Identities=6% Similarity=0.598 Sum_probs=15.2
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+.+|+.||.+.
T Consensus 70 ls~~ei~~l~~yl~~~ 85 (91)
T 1ls9_A 70 LDEDDIEAVSNYVYDQ 85 (91)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 8999999999999987
No 240
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=63.58 E-value=4.1 Score=23.52 Aligned_cols=16 Identities=19% Similarity=0.605 Sum_probs=15.1
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+.+|+.||+..
T Consensus 68 ls~~ei~~l~~yl~~~ 83 (89)
T 1c6r_A 68 LDDDEIAAVAAYVYDQ 83 (89)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999999999999876
No 241
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=63.49 E-value=9.5 Score=23.28 Aligned_cols=35 Identities=14% Similarity=0.304 Sum_probs=28.8
Q ss_pred CCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccce-eHHHHHHhc
Q psy11008 34 DRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRV-SVSELVENS 83 (96)
Q Consensus 34 DRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRV-si~eL~~~s 83 (96)
..|+-|.+|+.|+.-++-+++.. |+| |..+|.+..
T Consensus 22 ~~~~~i~Lt~~e~~lL~~L~~~~---------------g~~vsr~~L~~~v 57 (102)
T 3zq7_A 22 RGEEEVHLTPIEFRLLAVLLNNA---------------GKVLTQRQLLNQV 57 (102)
T ss_dssp ETTEEECCCHHHHHHHHHHHHTT---------------TCEEEHHHHHHHH
T ss_pred ECCEEEEcCHHHHHHHHHHHHCC---------------CeeECHHHHHHHh
Confidence 36888999999999999999999 654 888877653
No 242
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=63.02 E-value=6.3 Score=28.89 Aligned_cols=39 Identities=13% Similarity=0.274 Sum_probs=29.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQ 43 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~ 43 (96)
.+||.+||++..-|.+-++.|+++|.|.- -+||=.||++
T Consensus 57 ~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~~g~G~~V~~ 95 (272)
T 3eet_A 57 ARIREEYGVSDTVALEARKVLMAEGLVEG---RSGSGTYVRE 95 (272)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEE---CCC--EEECC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEE---ecCceEEEec
Confidence 47999999999999999999999998653 3444444443
No 243
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=62.89 E-value=4.2 Score=23.58 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=15.1
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+.+|+.||...
T Consensus 67 ls~~ei~~l~~yl~~~ 82 (90)
T 1cyi_A 67 LSEEEIQAVAEYVFKQ 82 (90)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 8999999999999887
No 244
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=62.83 E-value=4.2 Score=23.78 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=15.3
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 57 ~ls~~ei~~l~~yl~~~ 73 (80)
T 1wve_C 57 YVDDESLTQVAEYLSSL 73 (80)
T ss_dssp TSCHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHC
Confidence 37999999999999876
No 245
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=62.56 E-value=3.1 Score=23.90 Aligned_cols=17 Identities=0% Similarity=0.317 Sum_probs=14.8
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 62 ~Ls~~ei~~l~~yl~~l 78 (79)
T 2d0s_A 62 QVAEADIEKIVRWVLTL 78 (79)
T ss_dssp TSCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhC
Confidence 47999999999999753
No 246
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=62.32 E-value=4.7 Score=23.41 Aligned_cols=17 Identities=6% Similarity=0.233 Sum_probs=15.3
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
-+|++|+..|+.||...
T Consensus 69 ~ls~~ei~~l~~yl~~~ 85 (87)
T 2zon_G 69 AADEATLRAAVAYMMDA 85 (87)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 48999999999999875
No 247
>2k5j_A Uncharacterized protein YIIF; structure, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri 5 str}
Probab=62.18 E-value=10 Score=23.69 Aligned_cols=30 Identities=17% Similarity=0.325 Sum_probs=25.2
Q ss_pred ceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHh
Q psy11008 37 KFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVEN 82 (96)
Q Consensus 37 KfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~ 82 (96)
--|+++++.+..+-...+++ | +|.++|++.
T Consensus 12 isI~Lpdel~~~Ld~la~~~---------------g-~srselire 41 (80)
T 2k5j_A 12 ILLDLSNEVIKQLDDLEVQR---------------N-LPRADLLRE 41 (80)
T ss_dssp EEEEECHHHHHHHHHHHHHH---------------T-CCHHHHHHH
T ss_pred EEEECCHHHHHHHHHHHHHh---------------C-CCHHHHHHH
Confidence 45899999999999999999 7 588888764
No 248
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=62.03 E-value=5.1 Score=28.49 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=32.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCC-CceEEEcHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDR-GKFIYISQE 44 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDR-GKfIyIs~e 44 (96)
.|||..+|++...+-.-++.|++.|-+.- |.+ |+| .+++.
T Consensus 25 ~ela~~~gl~~stv~r~l~~L~~~G~v~~--~~~~~~Y-~lg~~ 65 (241)
T 2xrn_A 25 AAIAQLVGLPRSTVQRIINALEEEFLVEA--LGPAGGF-RLGPA 65 (241)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHTTTSEEE--CGGGCEE-EECSH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEE--eCCCCeE-EECHH
Confidence 58999999988888888999999999976 433 555 77764
No 249
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=61.82 E-value=11 Score=22.67 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=29.1
Q ss_pred CCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccc-eeHHHHHHhc
Q psy11008 34 DRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGR-VSVSELVENS 83 (96)
Q Consensus 34 DRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GR-Vsi~eL~~~s 83 (96)
-.|+-|-+|+.|+.-++-++... |+ ||..+|.+..
T Consensus 16 ~~~~~i~Lt~~E~~lL~~L~~~~---------------g~~vsr~~L~~~v 51 (96)
T 3rjp_A 16 RGDDEISLTKREYDLLNILMTNM---------------NRVMTREELLSNV 51 (96)
T ss_dssp ETTEEEECCHHHHHHHHHHHHTT---------------TSCBCHHHHHHHH
T ss_pred ECCEEEEcCHHHHHHHHHHHhCC---------------CeeEcHHHHHHHH
Confidence 46888999999999999999999 65 4888887653
No 250
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=61.61 E-value=18 Score=22.00 Aligned_cols=21 Identities=19% Similarity=0.387 Sum_probs=15.1
Q ss_pred ChhhhhhhCCChHHHHHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVE 21 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~e 21 (96)
+++||..+||+...+-...++
T Consensus 21 ~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 21 IEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHH
Confidence 368888888877666666654
No 251
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=61.35 E-value=13 Score=26.39 Aligned_cols=41 Identities=15% Similarity=0.291 Sum_probs=34.9
Q ss_pred hhhhhhhCCC-hHHHHHHHH-HHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMK-TQSVIDRIV-ELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lk-tq~vI~RI~-eL~~~g~ltGViDDRGKfIyIs 42 (96)
++|+...+++ ..+|=+-|- +....|-+.|-||..-+-++|+
T Consensus 113 ~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~ 155 (169)
T 3chm_A 113 DTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVP 155 (169)
T ss_dssp HHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEE
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEE
Confidence 5789999999 666666666 7888999999999999988887
No 252
>1nya_A Calerythrin; EF-hand, metal binding protein; NMR {Saccharopolyspora erythraea} SCOP: a.39.1.5
Probab=60.75 E-value=12 Score=22.92 Aligned_cols=48 Identities=17% Similarity=0.235 Sum_probs=32.2
Q ss_pred EEcHHHHHHHHHHHHhhchhchhhhhhhh--ccccceeHHHHHHhccccee
Q psy11008 40 YISQEELNSVATFIKQRGREELNSVATFI--KQKGRVSVSELVENSNQLVT 88 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~rgr~~~~~~~~~~--~~~GRVsi~eL~~~sN~lI~ 88 (96)
+||.+|+..+..-+. --.+++..+-..+ ...|+||..|+.....++..
T Consensus 118 ~I~~~e~~~~l~~~g-~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~~ 167 (176)
T 1nya_A 118 QINADEFAAWLTALG-MSKAEAAEAFNQVDTNGNGELSLDELLTAVRDFHF 167 (176)
T ss_dssp EEEHHHHHHHHHHTT-CCHHHHHHHHHHHCTTCSSEEEHHHHHHHHSCCSS
T ss_pred CCCHHHHHHHHHHhC-CCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHhc
Confidence 689999987665432 2233344433332 45799999999999888776
No 253
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=60.68 E-value=4.1 Score=31.64 Aligned_cols=41 Identities=22% Similarity=0.281 Sum_probs=36.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
+.|...|..+..++-.||..|.+.+-|.=.=||+.-|.|+.
T Consensus 342 ~ql~~rF~p~~~~IKk~Ie~LIereYleR~~~d~~~y~YlA 382 (382)
T 3dpl_C 342 EILKNMFLPQKKMIKEQIEWLIEHKYIRRDESDINTFIYMA 382 (382)
T ss_dssp HHTTTTCCCCHHHHHHHHHHHHHTTSEEEETTEEEEEEECC
T ss_pred HHHHhcCCCCHHHHHHHHHHHHhhhhhccCCCCCCeEEEcC
Confidence 45677899999999999999999999998888889999973
No 254
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=60.66 E-value=5.4 Score=23.66 Aligned_cols=17 Identities=29% Similarity=0.532 Sum_probs=15.6
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
-+|++|+.+|+.||+..
T Consensus 78 ~ls~~ei~~l~~yl~~~ 94 (105)
T 2ce0_A 78 RLQDEEIKLLAEFVKFQ 94 (105)
T ss_dssp CBCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 48999999999999876
No 255
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=60.57 E-value=8.2 Score=29.31 Aligned_cols=28 Identities=18% Similarity=0.129 Sum_probs=25.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCcc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALT 29 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~lt 29 (96)
.|||..+||+...|-+++++|++.|.+.
T Consensus 57 ~ela~~~gls~~tv~~~v~~L~~~gli~ 84 (429)
T 1z05_A 57 IDLSKESELAPASITKITRELIDAHLIH 84 (429)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4899999999999999999999998763
No 256
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=60.35 E-value=7.5 Score=28.60 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=25.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCcc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALT 29 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~lt 29 (96)
.|||.+||++..-+-.-+++|+++|.+.
T Consensus 25 ~ela~~l~vS~~tIrRdL~~l~~~G~v~ 52 (315)
T 2w48_A 25 AQIARELGIYRTTISRLLKRGREQGIVT 52 (315)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEE
Confidence 6899999998888778899999999997
No 257
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=60.32 E-value=7.5 Score=29.05 Aligned_cols=28 Identities=14% Similarity=0.159 Sum_probs=25.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCcc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALT 29 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~lt 29 (96)
.|||...||+...|-.++++|++.|-+.
T Consensus 37 ~~la~~~gls~~tv~~~v~~L~~~gli~ 64 (380)
T 2hoe_A 37 VELAEELGLTKTTVGEIAKIFLEKGIVV 64 (380)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 4899999999999999999999998774
No 258
>1yx7_A Calsensin, LAN3-6 antigen; calcium-binding protein EF-hand, helix-loop- helix, nervous system, metal binding protein; NMR {Haemopis marmorata} PDB: 1yx8_A
Probab=60.23 E-value=5.5 Score=22.26 Aligned_cols=49 Identities=14% Similarity=0.404 Sum_probs=30.4
Q ss_pred EEcHHHHHHHHHHHH---hhchhchhh----hhhhh--ccccceeHHHHHHhccccee
Q psy11008 40 YISQEELNSVATFIK---QRGREELNS----VATFI--KQKGRVSVSELVENSNQLVT 88 (96)
Q Consensus 40 yIs~eEl~~Va~fI~---~rgr~~~~~----~~~~~--~~~GRVsi~eL~~~sN~lI~ 88 (96)
+||.+|+..+..-+. .-..+++.. +-..+ ...|+|+..|++.....++.
T Consensus 23 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~I~~~eF~~~~~~~~~ 80 (83)
T 1yx7_A 23 YVTALELQTFMVTLDAYKALSKDKVKEASAKLIKMADKNSDGKISKEEFLNANAELLC 80 (83)
T ss_dssp SCSHHHHHHHHHHHTTCTTTTTTTTHHHHHHHHTTTCSSSCSCCSHHHHHHHHHHHHC
T ss_pred cCcHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHhhHHHHH
Confidence 588999888766553 112334444 33222 35799999999976655543
No 259
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=60.07 E-value=5.4 Score=23.32 Aligned_cols=16 Identities=13% Similarity=0.445 Sum_probs=14.8
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+..|+.||+..
T Consensus 67 ls~~ei~~l~~yl~~l 82 (87)
T 1cno_A 67 LSDADIANLAAYYASN 82 (87)
T ss_dssp CCHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhC
Confidence 7999999999999876
No 260
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=59.70 E-value=21 Score=25.65 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=40.1
Q ss_pred CCChHHHHHHHHHHHHcCCccEEee--CCC---ceEEEcHHHHHHHHHHHHhh
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVID--DRG---KFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViD--DRG---KfIyIs~eEl~~Va~fI~~r 56 (96)
+++...+---++.|+++|-|+.... +.| |+-.||++-...+..++.+-
T Consensus 68 ~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~~ 120 (204)
T 3l9f_A 68 DGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQSD 120 (204)
T ss_dssp ECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHSC
T ss_pred CCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhcc
Confidence 6788888889999999999998764 222 58889999999999999864
No 261
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=59.59 E-value=4.2 Score=20.49 Aligned_cols=25 Identities=4% Similarity=0.074 Sum_probs=18.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcC
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTG 26 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g 26 (96)
.++|..||++..-|-..+....+.|
T Consensus 25 ~~IA~~lgis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 25 HEMSRKISRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp HHHHHHHTCCHHHHHHHHHCSTTTT
T ss_pred HHHHHHHCcCHHHHHHHHhhHHhcC
Confidence 4789999998877777776665554
No 262
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=59.37 E-value=4.6 Score=24.20 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=14.3
Q ss_pred EEcHHHHHHHHHHHHh
Q psy11008 40 YISQEELNSVATFIKQ 55 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~ 55 (96)
.+|++|+.+|+.||.+
T Consensus 67 ~Lsd~ei~~v~~yi~~ 82 (83)
T 1cc5_A 67 DCSDDELKAAIGKMSG 82 (83)
T ss_dssp SCCHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4899999999999975
No 263
>1q80_A SCP, sarcoplasmic calcium-binding protein; all-alpha, metal binding protein; NMR {Neanthes diversicolor} SCOP: a.39.1.5 PDB: 2scp_A
Probab=58.66 E-value=9.3 Score=23.57 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=32.9
Q ss_pred EEcHHHHHHHHHHHHhhchhchhhhhhhh--ccccceeHHHHHHhcccce
Q psy11008 40 YISQEELNSVATFIKQRGREELNSVATFI--KQKGRVSVSELVENSNQLV 87 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~rgr~~~~~~~~~~--~~~GRVsi~eL~~~sN~lI 87 (96)
|||.+|+..+..-+. -..++++.+-..+ ...|+||..|++....+..
T Consensus 110 ~i~~~e~~~~l~~~g-~~~~~~~~~~~~~D~d~dg~i~~~ef~~~~~~~~ 158 (174)
T 1q80_A 110 NISRDEYGIFFGMLG-LDKTMAPASFDAIDTNNDGLLSLEEFVIAGSDFF 158 (174)
T ss_dssp SBCHHHHHHHHHHHT-CCGGGHHHHHHHHCTTCSSSBCHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHcC-CCHHHHHHHHHHhCCCCCceEeHHHHHHHHHHHh
Confidence 689999988776652 2334455544444 3579999999998887765
No 264
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=58.49 E-value=5.9 Score=23.62 Aligned_cols=16 Identities=6% Similarity=0.526 Sum_probs=15.1
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+.+|+.||+..
T Consensus 81 Ls~~ei~~l~~yl~~~ 96 (110)
T 2l4d_A 81 LGDAEVSALISYLEEE 96 (110)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 7999999999999876
No 265
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=58.46 E-value=5.5 Score=23.30 Aligned_cols=15 Identities=40% Similarity=0.691 Sum_probs=14.0
Q ss_pred EcHHHHHHHHHHHHh
Q psy11008 41 ISQEELNSVATFIKQ 55 (96)
Q Consensus 41 Is~eEl~~Va~fI~~ 55 (96)
+|++|+.+|+.||+.
T Consensus 83 ls~~ei~~l~~yl~s 97 (99)
T 1w2l_A 83 LSEREVAALIEFIKQ 97 (99)
T ss_dssp CCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHH
Confidence 799999999999975
No 266
>1x93_A Hypothetical protein HP0222; JHP0208, transcription, regula METJ, MNT, PArg, COPG, REPA; NMR {Helicobacter pylori} SCOP: a.43.1.3
Probab=57.80 E-value=10 Score=23.86 Aligned_cols=28 Identities=32% Similarity=0.608 Sum_probs=21.5
Q ss_pred EEEcHHHHHHHHHHHHhhchhchhhhhhhhcc
Q psy11008 39 IYISQEELNSVATFIKQRGREELNSVATFIKQ 70 (96)
Q Consensus 39 IyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~ 70 (96)
.|.|.||.+.+-+.-. ||..||..|||.
T Consensus 6 ~Y~SkEey~~L~klA~----eE~eSV~sfIKR 33 (55)
T 1x93_A 6 LYFSDEQYQKLEKMAN----EEEESVGSYIKR 33 (55)
T ss_dssp EEECHHHHHHHHHHHH----HTTSCTTHHHHH
T ss_pred EEecHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 6999999988766544 557888888873
No 267
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=57.35 E-value=46 Score=24.95 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=33.6
Q ss_pred ChhhhhhhCCChHHHHHHHH----HHHHcCCccEEee--CCCceEEE---cHHHHHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIV----ELQKTGALTGVID--DRGKFIYI---SQEELNSVAT 51 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~----eL~~~g~ltGViD--DRGKfIyI---s~eEl~~Va~ 51 (96)
|.++|..|+.....+-+=|. .|++.|.=+-... ..|.+.|| |.++.+.+-+
T Consensus 26 l~~~~~~~~~aks~~s~D~~~~~~~~~~~~~~~~~~~~ga~gg~~~~~~~~~~~a~~~~~ 85 (291)
T 1o57_A 26 LTFFSERYESAKSSISEDLTIIKQTFEQQGIGTLLTVPGAAGGVKYIPKMKQAEAEEFVQ 85 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTSEEEEEECSTTCEEEEEECCCHHHHHHHHH
T ss_pred HHHHHHHhccchhhhhhhHHHHHHHHHhcCCceEEEecCCCCceEEcccCCHHHHHHHHH
Confidence 46889999998887777787 8888875322222 45556655 5776655433
No 268
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=57.34 E-value=9.9 Score=20.63 Aligned_cols=46 Identities=26% Similarity=0.338 Sum_probs=29.0
Q ss_pred EEcHHHHHHHHHHHHhh---chhchhhhhhhh--ccccceeHHHHHHhccc
Q psy11008 40 YISQEELNSVATFIKQR---GREELNSVATFI--KQKGRVSVSELVENSNQ 85 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r---gr~~~~~~~~~~--~~~GRVsi~eL~~~sN~ 85 (96)
+|+.+|+..+..-+... ..++++.+-.-+ ...|+|+..|++....+
T Consensus 23 ~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~D~~~~g~i~~~eF~~~~~~ 73 (76)
T 1qx2_A 23 QISKEELKLVMQTLGPSLLKGMSTLDEMIEEVDKNGDGEVSFEEFLVMMKK 73 (76)
T ss_dssp SEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHHCTTCSSEECHHHHHHHHHH
T ss_pred eECHHHHHHHHHHhCCCcCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 48899988776655322 223444444333 35799999999876543
No 269
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=57.12 E-value=31 Score=25.63 Aligned_cols=76 Identities=20% Similarity=0.165 Sum_probs=56.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEE-EcHHHHHHHHHHHHh---hchhchhhhhhhhccccceeHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIY-ISQEELNSVATFIKQ---RGREELNSVATFIKQKGRVSVS 77 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy-Is~eEl~~Va~fI~~---rgr~~~~~~~~~~~~~GRVsi~ 77 (96)
.++|...|++...+-..+.++++.|...|-.-..+...| .|.+++..+...... |....-..+-.+.-.||-|-.+
T Consensus 44 ~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~vIav~s~KGGvGKT 123 (398)
T 3ez2_A 44 AALAKLPLLTRANVDYAVSEMEEKGYVFDKRPAGSSMKYAMSIQNIIDIYEHRGVPKYRDRYSEAYVIFISNLKGGVSKT 123 (398)
T ss_dssp GGGGGSTTCCHHHHHHHHHHHHHHTCCCCEEECSSSEEECBCHHHHHHHHHHTTCCCGGGTCCSCEEEEECCSSSSSSHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhcCCCCCcCCCCCeeeecCCHHHHHHHHHHhcccccCcCCCCCeEEEEEeCCCCccHH
Confidence 478999999998888899999999999997655566666 588888888776521 2222334567788899888443
No 270
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=56.98 E-value=8.2 Score=27.77 Aligned_cols=39 Identities=15% Similarity=0.300 Sum_probs=31.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~e 44 (96)
.|||..+|++...+-.-++.|++.|-+.- | .|+| .+++.
T Consensus 40 ~eia~~~gl~~stv~r~l~tL~~~G~v~~--~-~~~Y-~Lg~~ 78 (265)
T 2ia2_A 40 SDVARATDLTRATARRFLLTLVELGYVAT--D-GSAF-WLTPR 78 (265)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTSEEE--S-SSEE-EECGG
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEe--c-CCEE-EEcHH
Confidence 58999999988888888999999999976 3 3666 56654
No 271
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=56.66 E-value=17 Score=26.37 Aligned_cols=40 Identities=5% Similarity=0.167 Sum_probs=35.6
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
-||..|+++-.-.-.-|++|++.|.|-=|.-.++-.||.-
T Consensus 68 vlseRlkI~gSLARkaLreL~~kGlIk~V~kh~~q~IYTr 107 (143)
T 2xzm_8 68 TVVEKLKVNGSLARQLMRTMADRKLVEKVAKNGNQWVYSV 107 (143)
T ss_dssp HHHHHHCBCHHHHHHHHHHHHHTTSEEEEEEETTEEEEEE
T ss_pred HHHHHhcchHHHHHHHHHHHHHCCCEEEEecCCCeEEEec
Confidence 3778888888888888999999999999999999999974
No 272
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=56.53 E-value=8.3 Score=28.83 Aligned_cols=28 Identities=18% Similarity=0.260 Sum_probs=24.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCcc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALT 29 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~lt 29 (96)
.|||..+||+...|-.++++|++.|-+.
T Consensus 34 ~~la~~~~ls~~tv~~~v~~L~~~g~i~ 61 (406)
T 1z6r_A 34 IDLSRLAQLAPASITKIVHEMLEAHLVQ 61 (406)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCcEE
Confidence 4899999999999999999999987663
No 273
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=56.45 E-value=2.3 Score=28.21 Aligned_cols=37 Identities=24% Similarity=0.445 Sum_probs=0.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
++||...|++.+.+-.-+++|+++|.| +-+++.|+|-
T Consensus 168 ~~lA~~lg~sr~tvsR~l~~L~~~G~I----~~~~~~i~I~ 204 (213)
T 1o5l_A 168 EELSRLFGCARPALSRVFQELEREGYI----EKHGRRIKVL 204 (213)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCeE----EEcCCEEEEe
Confidence 689999999888888888999998765 3334445554
No 274
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=56.19 E-value=16 Score=24.24 Aligned_cols=38 Identities=11% Similarity=0.008 Sum_probs=30.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIY 40 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy 40 (96)
++||..++++..-+-+=++.|.+.|-+..+-. .|-|.-
T Consensus 34 ~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L 71 (149)
T 1ylf_A 34 DYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGL 71 (149)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEe
Confidence 58999999999888888999999999887665 565644
No 275
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=55.95 E-value=8.4 Score=32.48 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=36.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
+.|...|..+..++-.||..|.+.+-|.=.-||+..|.|+.
T Consensus 720 ~ql~~rF~p~~~~IKk~Ie~LIereYl~R~~~~~~~y~YlA 760 (760)
T 1ldj_A 720 TQLSSRFKPRVPVIKKCIDILIEKEYLERVDGEKDTYSYLA 760 (760)
T ss_dssp HHHTTTCCCCHHHHHHHHHHHHHTTSEEECSSSTTEEEECC
T ss_pred HHHhccCCCCHHHHHHHHHHHhhccceeeCCCCCcceeeCC
Confidence 34566799999999999999999999998888899999984
No 276
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=55.69 E-value=9.4 Score=23.93 Aligned_cols=13 Identities=8% Similarity=0.320 Sum_probs=11.2
Q ss_pred cceeHHHHHHhcc
Q psy11008 72 GRVSVSELVENSN 84 (96)
Q Consensus 72 GRVsi~eL~~~sN 84 (96)
|.+|+.||++..+
T Consensus 23 ~~psv~EIa~~lg 35 (77)
T 2jt1_A 23 APVKTRDIADAAG 35 (77)
T ss_dssp SCEEHHHHHHHHT
T ss_pred CCcCHHHHHHHHC
Confidence 8999999998764
No 277
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=55.66 E-value=7 Score=23.36 Aligned_cols=17 Identities=12% Similarity=0.432 Sum_probs=14.6
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||+..
T Consensus 86 ~ls~~ei~~l~~yl~~l 102 (103)
T 2zzs_A 86 LLSDDDIANLAAYYSSL 102 (103)
T ss_dssp TCCHHHHHHHHHHHHHC
T ss_pred hCCHHHHHHHHHHHHhC
Confidence 37999999999999863
No 278
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=55.64 E-value=16 Score=23.25 Aligned_cols=32 Identities=9% Similarity=0.104 Sum_probs=26.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID 33 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD 33 (96)
.|||...+|....+-.-|+.|++.|-|.=+-+
T Consensus 40 keLa~~~~l~~~tvt~iLk~LE~kglIkr~~~ 71 (91)
T 2dk5_A 40 RDVRYKSNLPLTEINKILKNLESKKLIKAVKS 71 (91)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 48999999998888888999999999874443
No 279
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=55.61 E-value=11 Score=26.76 Aligned_cols=42 Identities=14% Similarity=0.267 Sum_probs=34.2
Q ss_pred hhhhhhhC------CChHHHHHHHHHHHHcCCccEEeeCCCceEEEcH
Q psy11008 2 EDLAALFR------MKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQ 43 (96)
Q Consensus 2 edLAa~F~------lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~ 43 (96)
++++..++ ++.+|+-.-+..|..+|.|-|.||...+.+-+|.
T Consensus 145 ~~i~~~l~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk 192 (203)
T 3t5x_A 145 DAFLVALKFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSK 192 (203)
T ss_dssp HHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECS
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECC
Confidence 46666664 3678888889999999999999998888777764
No 280
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=55.38 E-value=36 Score=21.40 Aligned_cols=46 Identities=9% Similarity=0.147 Sum_probs=35.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
.++|..+|+++.- |...++.|-|.-.-.+.|.|-|.|++++..+..
T Consensus 6 ~e~A~~~gvs~~t----LR~ye~~Gll~p~~~~~~g~R~Y~~~dl~~l~~ 51 (109)
T 1r8d_A 6 KQVAEISGVSIRT----LHHYDNIELLNPSALTDAGYRLYSDADLERLQQ 51 (109)
T ss_dssp HHHHHHHSCCHHH----HHHHHHTTSSCCSEECTTCCEEBCHHHHHHHHH
T ss_pred HHHHHHHCcCHHH----HHHHHHCCCCCCCeECCCCCeeeCHHHHHHHHH
Confidence 4789999997543 456678899987765567778889999987653
No 281
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=55.12 E-value=7.1 Score=28.49 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=32.4
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEEL 46 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl 46 (96)
+.|||...||....+-.-++.|++.|-+. -|++|+| .+++.=+
T Consensus 48 l~eia~~lgl~ksTv~RlL~tL~~~G~v~--~~~~~~Y-~LG~~~~ 90 (275)
T 3mq0_A 48 AAELTRFLDLPKSSAHGLLAVMTELDLLA--RSADGTL-RIGPHSL 90 (275)
T ss_dssp HHHHHHHHTCC--CHHHHHHHHHHTTSEE--ECTTSEE-EECTHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHCCCEE--ECCCCcE-EehHHHH
Confidence 35899999999999999999999999996 4566765 4666533
No 282
>3li6_A Calcium-binding protein; calcium signaling protein, assemble free energy, dynamic behaviour, cytoskeleton, metal binding; 2.50A {Entamoeba histolytica}
Probab=54.80 E-value=16 Score=19.29 Aligned_cols=46 Identities=15% Similarity=0.190 Sum_probs=27.8
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHhccc
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVENSNQ 85 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~sN~ 85 (96)
+||.+|+..+..-+... ..+++..+-.-+ ...|+|+..|+.....+
T Consensus 16 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~~g~i~~~ef~~~~~~ 64 (66)
T 3li6_A 16 AVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGS 64 (66)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHTC
T ss_pred cccHHHHHHHHHHccCCCcHHHHHHHHHHHCCCCCCCCCHHHHHHHHHh
Confidence 58888887766544221 123333333332 45799999999887654
No 283
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=54.14 E-value=15 Score=24.47 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=32.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIY 40 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy 40 (96)
++||..++++..-+-.-++.|.+.|-+..+-...|-|.-
T Consensus 32 ~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 70 (143)
T 3t8r_A 32 KSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQL 70 (143)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeee
Confidence 689999999999999999999999998876555555543
No 284
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=54.10 E-value=38 Score=21.31 Aligned_cols=46 Identities=11% Similarity=0.168 Sum_probs=34.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
.++|..+|+++.- |.--++.|-|.-.-.+.|.|=|.|++++..+..
T Consensus 5 ~e~A~~~gvs~~t----LR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~ 50 (108)
T 2vz4_A 5 GQVAGFAGVTVRT----LHHYDDIGLLVPSERSHAGHRRYSDADLDRLQQ 50 (108)
T ss_dssp HHHHHHHTCCHHH----HHHHHHHTSSCCSEECSSCCEEBCHHHHHHHHH
T ss_pred HHHHHHHCcCHHH----HHHHHHCCCCCCCccCCCCCeecCHHHHHHHHH
Confidence 4789999997643 455677799987764556677789999987653
No 285
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=54.06 E-value=17 Score=24.55 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=35.4
Q ss_pred hhhhCCChHHHHHHHHHHHHcCCccEEe--eCCCce-----EEEcHHHHHHHHHHHHhh
Q psy11008 5 AALFRMKTQSVIDRIVELQKTGALTGVI--DDRGKF-----IYISQEELNSVATFIKQR 56 (96)
Q Consensus 5 Aa~F~lktq~vI~RI~eL~~~g~ltGVi--DDRGKf-----IyIs~eEl~~Va~fI~~r 56 (96)
+..+|++-...-+-++.|.++|-|.||- ++ +.. ++||++-++ |++..
T Consensus 23 ~e~l~Ise~~~~~il~~L~d~GyI~Gv~~~~~-~~~i~~~~~~IT~~Gle----YL~EN 76 (102)
T 2hgc_A 23 ENDIGVTEDQFDDAVNFLKREGYIIGVHYSDD-RPHLYKLGPELTEKGEN----YLKEN 76 (102)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHTSEECCEESSS-SEECCSSCCEECHHHHH----HHHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHCCCccceEEEeC-cceeeccCceECHHHHH----HHHHC
Confidence 3457888888888899999999999994 34 444 359998875 55554
No 286
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=53.83 E-value=17 Score=26.59 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=29.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCC
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRG 36 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRG 36 (96)
.+||..||.+..-+.+.+..++++|.+ .+||.+
T Consensus 172 ~~la~~l~ws~~~a~e~L~~~e~~G~l--~~D~~~ 204 (218)
T 3cuq_B 172 EEFAKLVGMSVLLAKERLLLAEKMGHL--CRDDSV 204 (218)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSE--EEEESS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCE--EEECCC
Confidence 579999999999999999999999987 578543
No 287
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=53.64 E-value=12 Score=23.78 Aligned_cols=34 Identities=24% Similarity=0.393 Sum_probs=28.4
Q ss_pred CCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccce-eHHHHHHh
Q psy11008 34 DRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRV-SVSELVEN 82 (96)
Q Consensus 34 DRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRV-si~eL~~~ 82 (96)
-.|+-|.+|+.|+.-++-+++.. |+| |..+|.+.
T Consensus 30 ~~g~~i~Lt~~E~~lL~~L~~~~---------------g~vvsr~~L~~~ 64 (120)
T 2z9m_A 30 KRGEDIELTHREFELFHYLSKHM---------------GQVMTREHLLQT 64 (120)
T ss_dssp ETTEEECCCHHHHHHHHHHHTTT---------------TCCEEHHHHHHH
T ss_pred ECCEEEeCCHHHHHHHHHHHHCC---------------CceEcHHHHHHH
Confidence 36888999999999999999999 664 88887764
No 288
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=53.59 E-value=49 Score=23.88 Aligned_cols=54 Identities=11% Similarity=0.114 Sum_probs=40.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
++|+..+|+..+.+-.-+..|.+.|.+.=+ ++.+...|++.+-++.+.+-|...
T Consensus 21 ~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 74 (258)
T 1lva_A 21 QEAATRASLSLEETRKLLQSMAAAGQVTLL-RVENDLYAISTERYQAWWQAVTRA 74 (258)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-EETTEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCEEEe-ccCCccEEEcHHHHHHHHHHHHHH
Confidence 688999999988888889999999996544 432333389999888777666554
No 289
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=52.66 E-value=3.3 Score=29.78 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=4.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFI 39 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfI 39 (96)
.+||.+||++..-|.+-++.|+++|.|.-. --+|-|+
T Consensus 44 ~~La~~~~vSr~tvr~Al~~L~~~G~i~~~-~g~G~~V 80 (247)
T 2ra5_A 44 IELAARLGLSRPTVRQAIQSLVDKGLLVRR-RGVGTQV 80 (247)
T ss_dssp ------------------------CEEEEE-C------
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEE-cCceeEE
Confidence 489999999999999999999999987542 2345454
No 290
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=52.66 E-value=9.6 Score=24.85 Aligned_cols=64 Identities=11% Similarity=0.122 Sum_probs=38.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeC--CCc-eEEEcHHHHHHHHHHHHhhchhchhhhhhhh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDD--RGK-FIYISQEELNSVATFIKQRGREELNSVATFI 68 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDD--RGK-fIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~ 68 (96)
.++|..||++...|-.-++...+.|.+ .+. .|+ ---++++....|..++++...--+..++..+
T Consensus 45 ~~IA~~lgis~~TV~rwl~r~~~~G~~---~~~~r~gr~~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l 111 (159)
T 2k27_A 45 CDISRQLRVSHGCVSKILGRYYETGSI---RPGVIGGSKPKVATPKVVEKIGDYKRQNPTMFAWEIRDRL 111 (159)
T ss_dssp HHHHHHHTCCSHHHHHHHCCSSTTSCC---CCCCCCCCCCCCCCTTHHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHhcCCc---cCCCCCCCCCCCCCHHHHHHHHHHHHHCccchHHHHHHHH
Confidence 468999999766655555555555542 221 232 3346888888898888776333333344434
No 291
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=52.64 E-value=12 Score=19.72 Aligned_cols=46 Identities=17% Similarity=0.232 Sum_probs=26.4
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHhccc
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVENSNQ 85 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~sN~ 85 (96)
+||.+|+..+..-+... ..+++..+-..+ ...|+|+..|+.....+
T Consensus 17 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~ef~~~~~~ 65 (67)
T 1tiz_A 17 KLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELNADEFTSCIEK 65 (67)
T ss_dssp CEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEECHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 57888887665433211 122333333333 35799999999876544
No 292
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=52.27 E-value=8.1 Score=24.59 Aligned_cols=16 Identities=19% Similarity=0.374 Sum_probs=15.1
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+.+|+.||++.
T Consensus 107 Lsd~ei~alaaYl~~~ 122 (137)
T 1mz4_A 107 LTEKDLVAIAGHILVE 122 (137)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 8999999999999876
No 293
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=52.12 E-value=30 Score=22.31 Aligned_cols=39 Identities=15% Similarity=0.364 Sum_probs=32.1
Q ss_pred hhhhhhh-----CCChHHHHHHHHHHHHcCCccEEeeCCCceEE
Q psy11008 2 EDLAALF-----RMKTQSVIDRIVELQKTGALTGVIDDRGKFIY 40 (96)
Q Consensus 2 edLAa~F-----~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy 40 (96)
+||...+ +++..-|-.-++.|.+.|.+.-+-.+.|+.-|
T Consensus 30 ~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~~~~~y 73 (131)
T 2o03_A 30 QELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDTGESVY 73 (131)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTTSCEEE
T ss_pred HHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCCCceEE
Confidence 4566666 78888888899999999999988888887666
No 294
>3f1p_B ARYL hydrocarbon receptor nuclear translocator; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.0 PDB: 3f1o_B* 3f1n_B 3h7w_B* 3h82_B* 1x0o_A 2hv1_A 4h6j_B 2b02_A* 2k7s_A 2a24_B
Probab=51.58 E-value=7.6 Score=22.20 Aligned_cols=18 Identities=11% Similarity=0.316 Sum_probs=14.0
Q ss_pred CccEEeeCCCceEEEcHH
Q psy11008 27 ALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 27 ~ltGViDDRGKfIyIs~e 44 (96)
.+.-++|..|+|+|+++.
T Consensus 13 d~i~~~d~~g~i~~~n~~ 30 (121)
T 3f1p_B 13 RFISRHNIEGIFTFVDHR 30 (121)
T ss_dssp EEEEEECTTSBEEEECTT
T ss_pred ceEEEECCCceEEEECcc
Confidence 344567899999999974
No 295
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=51.21 E-value=12 Score=24.68 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=29.1
Q ss_pred CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccce-eHHHHHHhc
Q psy11008 35 RGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRV-SVSELVENS 83 (96)
Q Consensus 35 RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRV-si~eL~~~s 83 (96)
.|+-|-+|+.|+.-+.-+++.. |+| |..+|.+..
T Consensus 31 ~g~~i~Lt~~E~~lL~~L~~~~---------------g~vvsre~L~~~v 65 (120)
T 2zxj_A 31 RGEDIELTHREFELFHYLSKHM---------------GQVMTREHLLQTV 65 (120)
T ss_dssp TTEEECCCHHHHHHHHHHHTTT---------------TCCBCHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHhCC---------------CceEcHHHHHHHh
Confidence 6899999999999999999999 776 888887653
No 296
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=51.20 E-value=17 Score=22.74 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=28.4
Q ss_pred CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccce-eHHHHHHhc
Q psy11008 35 RGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRV-SVSELVENS 83 (96)
Q Consensus 35 RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRV-si~eL~~~s 83 (96)
.|+-|-+|+.|+.-++-++... |+| |..+|.+..
T Consensus 29 ~g~~i~Lt~~E~~lL~~L~~~~---------------g~~vsr~~L~~~v 63 (110)
T 2pmu_A 29 AGQPVSLSPTEFTLLRYFVINA---------------GTVLSKPKILDHV 63 (110)
T ss_dssp TTEEECCCHHHHHHHHHHHHTT---------------TSCBCHHHHHHHH
T ss_pred CCEEEecCHHHHHHHHHHHHCC---------------CEEEcHHHHHHHH
Confidence 6788999999999999999999 654 888887654
No 297
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B* 2p6b_B 1aui_B 1m63_B* 1tco_B*
Probab=51.18 E-value=18 Score=21.69 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=30.0
Q ss_pred EEcHHHHHHHHHHH-Hh-hchhchhhhhhh------hccccceeHHHHHHhcccc
Q psy11008 40 YISQEELNSVATFI-KQ-RGREELNSVATF------IKQKGRVSVSELVENSNQL 86 (96)
Q Consensus 40 yIs~eEl~~Va~fI-~~-rgr~~~~~~~~~------~~~~GRVsi~eL~~~sN~l 86 (96)
+||.+|+..+..-+ .. -..++++.+... ....|+||..|+......+
T Consensus 91 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 145 (155)
T 3ll8_B 91 YISNGELFQVLKMMVGNNLKDTQLQQIVDKTIINADKDGDGRISFEEFCAVVGGL 145 (155)
T ss_dssp CBCHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHCTTSSSSBCHHHHHHHHGGG
T ss_pred cCcHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhcc
Confidence 58999998877653 11 123344444333 2357999999999887664
No 298
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=51.06 E-value=9 Score=23.59 Aligned_cols=17 Identities=35% Similarity=0.530 Sum_probs=15.6
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 104 ~Ls~~ei~~l~~Yl~~l 120 (129)
T 1f1c_A 104 NISEDDLYNVAGYILLQ 120 (129)
T ss_dssp SCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 48999999999999876
No 299
>2ciw_A Chloroperoxidase; oxidoreductase, heme, iron, chloride, manganese, pyrrolidone carboxylic acid, glycoprotein, metal-binding; HET: NAG BMA MAN HEM; 1.15A {Caldariomyces fumago} SCOP: a.39.3.1 a.39.3.1 PDB: 1cpo_A* 2civ_A* 2cix_A* 2ciy_A* 2ciz_A* 2cj0_A* 2cj1_A* 2cj2_A* 2cpo_A* 2j18_A* 2j19_A* 2j5m_A*
Probab=50.94 E-value=3.9 Score=32.24 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=27.2
Q ss_pred hhhhhh--hhccccc-eeHHHHHHhcccceecccc
Q psy11008 61 LNSVAT--FIKQKGR-VSVSELVENSNQLVTLIPD 92 (96)
Q Consensus 61 ~~~~~~--~~~~~GR-Vsi~eL~~~sN~lI~L~p~ 92 (96)
||.+|. ||-..|| +|+.+|+..-++..++.|+
T Consensus 33 LNaLANHGyLpR~G~nit~~~l~~al~~~~n~~~~ 67 (299)
T 2ciw_A 33 LNALANHGYIPHDGRAISRETLQNAFLNHMGIANS 67 (299)
T ss_dssp HHHHHHTTSSCTTCEEECHHHHHHHHHHHHCBCHH
T ss_pred HHHHHhcCCcCCCCCccCHHHHHHHHHHhcCCCHH
Confidence 677777 8888899 9999999999988888765
No 300
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=50.78 E-value=13 Score=22.99 Aligned_cols=34 Identities=18% Similarity=0.272 Sum_probs=27.9
Q ss_pred CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccce-eHHHHHHhc
Q psy11008 35 RGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRV-SVSELVENS 83 (96)
Q Consensus 35 RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRV-si~eL~~~s 83 (96)
.|+-|.+|+.|..-++-++... |+| |..+|.+..
T Consensus 26 ~g~~i~Lt~~E~~lL~~L~~~~---------------g~vvsr~~L~~~v 60 (106)
T 1gxq_A 26 GEEPLEMGPTEFKLLHFFMTHP---------------ERVYSREQLLNHV 60 (106)
T ss_dssp TTEECCCCHHHHHHHHHHHHSC---------------SSEECHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHCC---------------CeeEcHHHHHHHH
Confidence 6788889999999999999998 554 777777654
No 301
>3mcr_A NADH dehydrogenase, subunit C; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.65A {Thermobifida fusca}
Probab=50.26 E-value=17 Score=27.29 Aligned_cols=45 Identities=29% Similarity=0.321 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHHcC------CccEEeeCCC-ceEEEcHHHHHHHHHHHHhh
Q psy11008 12 TQSVIDRIVELQKTG------ALTGVIDDRG-KFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 12 tq~vI~RI~eL~~~g------~ltGViDDRG-KfIyIs~eEl~~Va~fI~~r 56 (96)
-++++|+|.+...+. .+..+.-++| -.|+|..+.+..||+|++..
T Consensus 77 ~d~v~d~L~e~l~~~~~~f~~~i~~~~~~~~eltl~V~~e~l~~v~~~Lkd~ 128 (213)
T 3mcr_A 77 FDEVADALERSLKEIGTPYDTAISRVVVDRGEITFHVQREHLLDVATRLRDD 128 (213)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHEEEEEEETTEEEEEECGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhcccccccceeEEEEECCEEEEEEcHHHHHHHHHHHHhC
Confidence 478999998876543 3555555566 45899999999999999986
No 302
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=50.09 E-value=32 Score=22.00 Aligned_cols=39 Identities=23% Similarity=0.308 Sum_probs=28.9
Q ss_pred hhhhhhhCC----ChHHHHHHHHHHHHcCCccEEeeCCCceEEE
Q psy11008 2 EDLAALFRM----KTQSVIDRIVELQKTGALTGVIDDRGKFIYI 41 (96)
Q Consensus 2 edLAa~F~l----ktq~vI~RI~eL~~~g~ltGViDDRGKfIyI 41 (96)
.|||..++. +...|-.-|..|++.|-|.=.-|.| .|+|-
T Consensus 53 ~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~gR-~~~Y~ 95 (99)
T 2k4b_A 53 DEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKEGR-KFVYR 95 (99)
T ss_dssp HHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEETT-EEEEE
T ss_pred HHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeCCC-EEEEE
Confidence 478888875 4566667789999999998776544 67774
No 303
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=49.93 E-value=18 Score=22.31 Aligned_cols=34 Identities=9% Similarity=0.203 Sum_probs=28.2
Q ss_pred CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccc-eeHHHHHHhc
Q psy11008 35 RGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGR-VSVSELVENS 83 (96)
Q Consensus 35 RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GR-Vsi~eL~~~s 83 (96)
.|+-|-+|+.|+.-++-++... |+ ||..+|.+..
T Consensus 26 ~~~~i~Lt~~E~~lL~~L~~~~---------------g~~vsr~~L~~~v 60 (110)
T 1opc_A 26 EDEPMPLTSGEFAVLKALVSHP---------------REPLSRDKLMNLA 60 (110)
T ss_dssp TTEEECCCHHHHHHHHHHHHST---------------TCCEEHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHcC---------------CceEcHHHHHHHH
Confidence 5778889999999999999998 65 4888887654
No 304
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=49.91 E-value=19 Score=22.99 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccce-eHHHHHHhc
Q psy11008 35 RGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRV-SVSELVENS 83 (96)
Q Consensus 35 RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRV-si~eL~~~s 83 (96)
.|+-|-+|+.|+.-++-+++.. |+| |..+|.+..
T Consensus 36 ~g~~i~Lt~~E~~LL~~L~~~~---------------g~vvsre~L~~~v 70 (115)
T 2k4j_A 36 HEKKLDLTRAEYEILSLLISKK---------------GYVFSRESIAIES 70 (115)
T ss_dssp TTEEECSCHHHHHHHHHHHHHC---------------CCEECHHHHHHHT
T ss_pred CCEEEecCHHHHHHHHHHHHcC---------------CcEEcHHHHHHHH
Confidence 5788899999999999999999 654 888887754
No 305
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=49.87 E-value=12 Score=19.02 Aligned_cols=14 Identities=7% Similarity=0.294 Sum_probs=12.2
Q ss_pred EeeCCCceEEEcHH
Q psy11008 31 VIDDRGKFIYISQE 44 (96)
Q Consensus 31 ViDDRGKfIyIs~e 44 (96)
++|..|+++|+++.
T Consensus 7 ~~d~~g~i~~~N~~ 20 (96)
T 3a0s_A 7 TLSKDGRITEWNKK 20 (96)
T ss_dssp EEETTSBEEEECHH
T ss_pred EEcCCCCEeehhHH
Confidence 57999999999875
No 306
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=49.86 E-value=29 Score=24.10 Aligned_cols=47 Identities=13% Similarity=0.135 Sum_probs=36.5
Q ss_pred hhhhhhhCCCh----HHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhc
Q psy11008 2 EDLAALFRMKT----QSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRG 57 (96)
Q Consensus 2 edLAa~F~lkt----q~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rg 57 (96)
.++....||++ +++++||++..+.+. ..| ++.+..+++|...|.+++
T Consensus 46 K~~cr~~GL~~sGkKaeLi~RI~~yl~~~~------~~g---~~D~~rl~ai~~lI~~~~ 96 (114)
T 2rnn_A 46 KDICRSVSFPVSGRKAVLQDLIRNFLQNAL------VVG---KSDPYRVQAVKFLIERIR 96 (114)
T ss_dssp HHHHHHTTCCTTSCHHHHHHHHHHHHHHTT------CTT---CCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcCCcHHHHHHHHHHHHHhcc------ccC---CCCHHHHHHHHHHHHHHh
Confidence 35566677765 899999999988777 222 567899999999999883
No 307
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=49.74 E-value=71 Score=23.09 Aligned_cols=61 Identities=25% Similarity=0.379 Sum_probs=42.6
Q ss_pred CCChHHHHHHHHHHHHcCCccEEeeCCCceEEE---cHHHHH-HHHHHHHhhchhchhhhhhhhccccce-eHHHHHHh
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVIDDRGKFIYI---SQEELN-SVATFIKQRGREELNSVATFIKQKGRV-SVSELVEN 82 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyI---s~eEl~-~Va~fI~~rgr~~~~~~~~~~~~~GRV-si~eL~~~ 82 (96)
+|+.+.+..-+.+|.+.|...=+ |..++-.+| |++|+. .+.+|+...| |+|.| ++.||++-
T Consensus 68 ~Ls~e~~~~il~~L~~~g~aew~-d~~~~~~~I~Wrt~~eWa~~iy~wv~~~G------------~~~sV~TlyEL~~G 133 (176)
T 3cuq_C 68 KLPVESIQIVLEELRKKGNLEWL-DKSKSSFLIMWRRPEEWGKLIYQWVSRSG------------QNNSVFTLYELTNG 133 (176)
T ss_dssp ECCHHHHHHHHHHHHHHTSEEEC-SSSSSEEEECSSCHHHHHHHHHHHHHTTT------------CCSCEEEHHHHHHC
T ss_pred cCCHHHHHHHHHHHHhcCCceee-cCCCCEEEEEeCCHHHHHHHHHHHHHhcC------------CcCcEEEEeeeccC
Confidence 67777777778999999977643 544444444 777774 5788999996 44555 77777764
No 308
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=49.41 E-value=18 Score=27.46 Aligned_cols=64 Identities=28% Similarity=0.338 Sum_probs=44.4
Q ss_pred CCChHHHHHHHHHHHHcCCccEEeeCCCc-eEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHhc
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVIDDRGK-FIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVENS 83 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViDDRGK-fIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~s 83 (96)
-++.+|+..-|+.|..-|.=..|+.=.|+ ||.-.|.|++....-|-+- +..+|.||+++|..+-
T Consensus 114 ~IS~dDi~rAik~L~~LG~g~~v~~~~g~~~VqSvp~el~~D~~~vLel-----------a~~~g~vt~~~L~~~l 178 (234)
T 3cuq_A 114 DVSQDDLIRAIKKLKALGTGFGIIPVGGTYLIQSVPAELNMDHTVVLQL-----------AEKNGYVTVSEIKASL 178 (234)
T ss_dssp SCCHHHHHHHHHHHGGGBTTCEEEEETTEEEEECSCCCCCHHHHHHHHH-----------HTTTSEECHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCeEEEEECCEEEEEeCCCccchHHHHHHHH-----------HHhcCcCcHHHHHHHh
Confidence 46889999999999998864556662255 6666676776655544332 2345999999998653
No 309
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=48.98 E-value=10 Score=23.30 Aligned_cols=17 Identities=18% Similarity=0.454 Sum_probs=15.6
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 104 ~Ls~~ei~~l~~Yl~~l 120 (124)
T 3cp5_A 104 ALSEEQARAILEYLRQV 120 (124)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 68999999999999875
No 310
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=48.73 E-value=19 Score=24.77 Aligned_cols=40 Identities=15% Similarity=0.196 Sum_probs=34.5
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
-||..|+++-.-+-.-|++|++.|.|.=|.-.+.-.||.-
T Consensus 64 vlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYTr 103 (108)
T 3u5c_Z 64 VLVDRLKIGGSLARIALRHLEKEGIIKPISKHSKQAIYTR 103 (108)
T ss_dssp HHHHTTCCCTTHHHHHHHHHSSSSSCEEEECCSSCCEEEC
T ss_pred HhhhhhhhhHHHHHHHHHHHHHCCCEEEEecCCCEEEEec
Confidence 3677788887777788999999999999999999999963
No 311
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=48.66 E-value=31 Score=22.70 Aligned_cols=40 Identities=10% Similarity=0.219 Sum_probs=32.3
Q ss_pred hhhhhhh-----CCChHHHHHHHHHHHHcCCccEEeeCCCceEEE
Q psy11008 2 EDLAALF-----RMKTQSVIDRIVELQKTGALTGVIDDRGKFIYI 41 (96)
Q Consensus 2 edLAa~F-----~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyI 41 (96)
+||...+ +++..-|-.-++.|.+.|.+.-+-.+.|+..|-
T Consensus 41 ~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 85 (145)
T 2fe3_A 41 DDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGDASSRFD 85 (145)
T ss_dssp HHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTTSCCEEE
T ss_pred HHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCCCceEEE
Confidence 4566666 788888888899999999999988887877774
No 312
>3v4g_A Arginine repressor; vibrio vulnificus CMCP6, virulence, type secretion system, center for structural genomics of infecti diseases, csgid; 1.60A {Vibrio vulnificus} PDB: 1aoy_A
Probab=48.63 E-value=15 Score=26.97 Aligned_cols=34 Identities=21% Similarity=0.400 Sum_probs=23.8
Q ss_pred CCC--hHHHHHH-HHHHHHcCCccEEeeCCCceEEEcHHHH
Q psy11008 9 RMK--TQSVIDR-IVELQKTGALTGVIDDRGKFIYISQEEL 46 (96)
Q Consensus 9 ~lk--tq~vI~R-I~eL~~~g~ltGViDDRGKfIyIs~eEl 46 (96)
|+. ||..+.| |++| | +.=|-+..|+|+|.-+++.
T Consensus 61 Gi~viTQATvSRDIkEL---g-lvKv~~~~G~~~Y~lp~~~ 97 (180)
T 3v4g_A 61 GFENINQSKVSRMLTKF---G-AVRTRNAKMEMVYCLPTEL 97 (180)
T ss_dssp TCTTCCHHHHHHHHHHT---T-CEEEECTTSCEEEECC---
T ss_pred CCcccCHHHHHHHHHHc---C-CEEeeCCCCCEEEEeCCcc
Confidence 565 7999988 5655 3 4457789999999988764
No 313
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=48.61 E-value=15 Score=23.25 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=28.5
Q ss_pred CCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccce-eHHHHHHhc
Q psy11008 34 DRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRV-SVSELVENS 83 (96)
Q Consensus 34 DRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRV-si~eL~~~s 83 (96)
..|+-|.+|+.|+.-++-+++.. |+| |..+|.+..
T Consensus 22 ~~g~~i~Lt~~E~~lL~~L~~~~---------------g~vvsre~L~~~v 57 (112)
T 2jzy_A 22 RSGKKIHLTGKEYVLLELLLQRT---------------GEVLPRSLISSLV 57 (112)
T ss_dssp ETTEECCCCHHHHHHHHHHHHTT---------------TSCBCHHHHHHHH
T ss_pred ECCEEEecCHHHHHHHHHHHHCC---------------CceEcHHHHHHHh
Confidence 36788899999999999999999 554 777777654
No 314
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=48.54 E-value=23 Score=22.82 Aligned_cols=35 Identities=23% Similarity=0.390 Sum_probs=28.0
Q ss_pred CCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccce-eHHHHHHhc
Q psy11008 34 DRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRV-SVSELVENS 83 (96)
Q Consensus 34 DRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRV-si~eL~~~s 83 (96)
-.|+-|-+|+.|+.-++-++... |+| |..+|.+..
T Consensus 37 ~~g~~i~Lt~~E~~LL~~L~~~~---------------g~vvsre~L~~~v 72 (121)
T 2hwv_A 37 KRGEKIELTHREFELLYYLAKHI---------------GQVMTREHLLQTV 72 (121)
T ss_dssp ETTEEEECCHHHHHHHHHHHHTT---------------TCCBCHHHHHHHH
T ss_pred ECCEEEECCHHHHHHHHHHHHcC---------------CeEEcHHHHHHHH
Confidence 36788899999999999999999 554 777776653
No 315
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=48.43 E-value=37 Score=25.94 Aligned_cols=47 Identities=15% Similarity=0.166 Sum_probs=35.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSV 49 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~V 49 (96)
++++..+|++.+-+-.-+++|++.|.|.-+-.-|+ .+|+.++=++-+
T Consensus 315 ~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~~~~gR~-~~y~~~~~~~~l 361 (373)
T 2qc0_A 315 QNLVESGLAKRQTASVYLKQLCDIGVLEEVQSGKE-KLFVHPKFVTLM 361 (373)
T ss_dssp HHHHHTSSSCHHHHHHHHHHHHHTTSCEEC--CCS-CEEECHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCcEEEecCCCc-eEEehHHHHHHH
Confidence 57889999998888888999999999987654455 577777655543
No 316
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=48.32 E-value=17 Score=22.48 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=28.5
Q ss_pred CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccc-eeHHHHHHhc
Q psy11008 35 RGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGR-VSVSELVENS 83 (96)
Q Consensus 35 RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GR-Vsi~eL~~~s 83 (96)
.|+-|.+|+.|+.-++-++... |+ ||..+|.+..
T Consensus 24 ~g~~i~Lt~~E~~lL~~L~~~~---------------g~~vsr~~L~~~v 58 (109)
T 2hqn_A 24 KGREVEVKGKPFEVLTHLARHR---------------DQIVSKEQLLDAI 58 (109)
T ss_dssp TTEEEECCCSTHHHHHHHHHHT---------------CSEEEHHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHCC---------------CeeEcHHHHHHHH
Confidence 6788999999999999999999 65 4888887654
No 317
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=48.19 E-value=20 Score=26.77 Aligned_cols=75 Identities=19% Similarity=0.161 Sum_probs=47.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEE-EcHHHHHHHHHHH---HhhchhchhhhhhhhccccceeH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIY-ISQEELNSVATFI---KQRGREELNSVATFIKQKGRVSV 76 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy-Is~eEl~~Va~fI---~~rgr~~~~~~~~~~~~~GRVsi 76 (96)
.++|...|++.+.+-..+.++++.|...|-.-..+.--| +|.+++..+-..- ..|....--.+-.+.-+||-|-.
T Consensus 47 ~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~vIav~s~KGGvGK 125 (403)
T 3ez9_A 47 NAVAKLPKLSRRIVDQAIKEMEEDGYQFNKKQVGNVEQYALTIQNVIDIYAHRKIPKYRDIHKSPYVIFVVNLKGGVSK 125 (403)
T ss_dssp HHHHHSTTCCHHHHHHHHHHHHHTSCCCCEEEETTEEEECBCHHHHHHHHHHTTCCCHHHHSCSCEEEEECCC------
T ss_pred HHHHHHhCCCHHHHHHHHHHHhhcCCCCCcCCCCceeeeccCHHHHHHHHHHhccCCcCCCCCCceEEEEEcCCCCchH
Confidence 478999999988887888999999999888654444444 6888887776541 11111122346678888988743
No 318
>3f1p_A Endothelial PAS domain-containing protein 1; PAS domain, heterodimer, internal cavity, activator, angiogenesis, congenital erythrocytosis; 1.17A {Homo sapiens} SCOP: d.110.3.7 PDB: 3f1o_A* 3f1n_A 3h7w_A* 3h82_A* 1p97_A 2a24_A 4h6j_A
Probab=47.59 E-value=10 Score=21.38 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=13.1
Q ss_pred cEEeeCCCceEEEcHH
Q psy11008 29 TGVIDDRGKFIYISQE 44 (96)
Q Consensus 29 tGViDDRGKfIyIs~e 44 (96)
.-++|..|+++|+++.
T Consensus 12 i~~~d~~g~i~~~n~~ 27 (117)
T 3f1p_A 12 LSEHSMDMKFTYCDDR 27 (117)
T ss_dssp EEEECTTCBEEEECTH
T ss_pred EEEECCCceEEEECcC
Confidence 3467999999999875
No 319
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=47.58 E-value=22 Score=19.35 Aligned_cols=16 Identities=19% Similarity=0.505 Sum_probs=12.9
Q ss_pred cEEeeCCCceEEEcHH
Q psy11008 29 TGVIDDRGKFIYISQE 44 (96)
Q Consensus 29 tGViDDRGKfIyIs~e 44 (96)
.=++|..|+++|+++.
T Consensus 26 i~~~d~~g~i~~~N~~ 41 (118)
T 3olo_A 26 SFCLGDNWQFLYVNDA 41 (118)
T ss_dssp EEEECTTSBEEEECHH
T ss_pred EEEECCCCcEEEEHHH
Confidence 3457999999999874
No 320
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein, EF-hand, calcium ION, metal binding protein; HET: 1PE P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Probab=47.13 E-value=42 Score=21.01 Aligned_cols=71 Identities=14% Similarity=0.162 Sum_probs=32.8
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhc--hhchhhhhhhh--ccccceeHHH
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRG--REELNSVATFI--KQKGRVSVSE 78 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rg--r~~~~~~~~~~--~~~GRVsi~e 78 (96)
.++..+++..+++-.-.+.+-.. +..| +||.+|+..+..-+...| .+++..+-..+ ...|.|+..|
T Consensus 15 ~l~~~~~~~~~~i~~~f~~fd~~-------~~~G---~i~~~e~~~~l~~~~~~~~~~~~~~~~f~~~D~d~~g~i~~~e 84 (190)
T 1g8i_A 15 ELTRKTYFTEKEVQQWYKGFIKD-------CPSG---QLDAAGFQKIYKQFFPFGDPTKFATFVFNVFDENKDGRIEFSE 84 (190)
T ss_dssp HHHHTSSSCHHHHHHHHHHHHHH-------CTTS---EEEHHHHHHHHHHHCTTSCTHHHHHHHHHHHCTTCSSEEEHHH
T ss_pred HHHHccCCCHHHHHHHHHHHHHh-------CCCC---cCCHHHHHHHHHHhCCCCChHHHHHHHHHHHhcCCCCeEeHHH
Confidence 45555666555554444444333 1233 567777766554431101 11222222222 2356677776
Q ss_pred HHHhc
Q psy11008 79 LVENS 83 (96)
Q Consensus 79 L~~~s 83 (96)
+....
T Consensus 85 f~~~~ 89 (190)
T 1g8i_A 85 FIQAL 89 (190)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66544
No 321
>2k1o_A Putative; repressor, transcriptional regulator, D binding, ribbon-helix-helix, HP0564, JHP0511, unknown funct regulation; NMR {Helicobacter pylori}
Probab=46.91 E-value=16 Score=23.64 Aligned_cols=27 Identities=37% Similarity=0.673 Sum_probs=20.3
Q ss_pred EEEcHHHHHHHHHHHHhhchhchhhhhhhhc
Q psy11008 39 IYISQEELNSVATFIKQRGREELNSVATFIK 69 (96)
Q Consensus 39 IyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~ 69 (96)
.|.|.||.+.+-+.-. ||..||..|||
T Consensus 20 ~Y~SkEey~~L~klA~----eE~eSV~sfIK 46 (66)
T 2k1o_A 20 FYLSKEEHDVLRRLAD----EEVESVNSFVK 46 (66)
T ss_dssp EEEEHHHHHHHHHHHH----TTCSCHHHHHH
T ss_pred EEecHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 6999999987765443 45778888876
No 322
>1a62_A RHO; transcription termination, termination, RNA binding domain, transcription regulation, OB fold, F1-ATPase; 1.55A {Escherichia coli BL21} SCOP: a.140.3.1 b.40.4.5 PDB: 1a63_A 2a8v_A 1a8v_A
Probab=46.15 E-value=21 Score=24.35 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=23.7
Q ss_pred hhhhhhhCC------ChHH-HHHHHHHHHHcCCc---cEEee
Q psy11008 2 EDLAALFRM------KTQS-VIDRIVELQKTGAL---TGVID 33 (96)
Q Consensus 2 edLAa~F~l------ktq~-vI~RI~eL~~~g~l---tGViD 33 (96)
.+||..+++ +.++ +...++++.++|.+ +||+|
T Consensus 15 ~eiAk~LgI~~~s~mrKqeLI~~IL~~~~~~~~~~~~~Gvle 56 (130)
T 1a62_A 15 ITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLE 56 (130)
T ss_dssp HHHHHTTTCCCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHcCCCCccccCHHHHHHHHHHHHHhcCCeEEEEEEEE
Confidence 578888875 5677 45667888888854 89988
No 323
>1ywy_A Hypothetical protein PA2021; PAT85, NESG, GFT-structural genomics, PSI, protein STRU initiative, northeast structural genomics consortium; NMR {Pseudomonas aeruginosa} SCOP: b.55.2.1
Probab=46.01 E-value=12 Score=24.74 Aligned_cols=20 Identities=30% Similarity=0.366 Sum_probs=16.3
Q ss_pred EeeCCCceEEEcHHHHHHHH
Q psy11008 31 VIDDRGKFIYISQEELNSVA 50 (96)
Q Consensus 31 ViDDRGKfIyIs~eEl~~Va 50 (96)
|+.=.|+=||||+.|.+++-
T Consensus 40 v~~l~g~Rv~ItEaEAdaLt 59 (74)
T 1ywy_A 40 VLYIDGKRLHISEEDAQRLV 59 (74)
T ss_dssp EEEETTCCEECCHHHHHHHH
T ss_pred EEEEcCcEEeccHHHhhhee
Confidence 44557999999999998764
No 324
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=45.93 E-value=18 Score=21.03 Aligned_cols=44 Identities=18% Similarity=0.283 Sum_probs=25.3
Q ss_pred EEcHHHHHHHHHHHHh----hchhchhhhhhhh--ccccceeHHHHHHhc
Q psy11008 40 YISQEELNSVATFIKQ----RGREELNSVATFI--KQKGRVSVSELVENS 83 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~----rgr~~~~~~~~~~--~~~GRVsi~eL~~~s 83 (96)
|||.+|+..+..-+.. -..+++..+-..+ ...|+|+..|+....
T Consensus 57 ~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~ 106 (109)
T 1rwy_A 57 FIEEDELGSILKGFSSDARDLSAKETKTLMAAGDKDGDGKIGVEEFSTLV 106 (109)
T ss_dssp EECHHHHHTHHHHHCTTCCCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHH
T ss_pred eEcHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHH
Confidence 6888888777665511 1223344333333 346888888887643
No 325
>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}
Probab=45.91 E-value=6.6 Score=33.48 Aligned_cols=22 Identities=36% Similarity=0.761 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHcCCccEEeeCCCce
Q psy11008 13 QSVIDRIVELQKTGALTGVIDDRGKF 38 (96)
Q Consensus 13 q~vI~RI~eL~~~g~ltGViDDRGKf 38 (96)
.=+||-|-+|.+.| +||.+|||
T Consensus 447 SGlid~va~l~~~G----iid~~G~~ 468 (631)
T 3zyy_X 447 SGLIDLLANLKRAG----IIDRSGKI 468 (631)
T ss_dssp HHHHHHHHHHHHHT----SBCTTCCB
T ss_pred hHHHHHHHHHHHCC----CCCCCCcc
Confidence 44677777777655 45555554
No 326
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=45.83 E-value=68 Score=21.77 Aligned_cols=44 Identities=16% Similarity=0.181 Sum_probs=33.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVA 50 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va 50 (96)
.++|..+|+++. -|.--++.|-|.-.-+ .|.|=|.+++++..+.
T Consensus 15 ~e~A~~~gvs~~----TLR~ye~~Gll~p~r~-~~g~R~Y~~~dl~~l~ 58 (154)
T 2zhg_A 15 GEVAKRSGVAVS----ALHFYESKGLITSIRN-SGNQRRYKRDVLRYVA 58 (154)
T ss_dssp HHHHHHHTSCHH----HHHHHHHTTSSCCEEC-TTSCEEBCTTHHHHHH
T ss_pred HHHHHHHCcCHH----HHHHHHHcCCCCcccC-CCCCEEeCHHHHHHHH
Confidence 478899999764 4567788999986544 5667778999988765
No 327
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=45.74 E-value=14 Score=20.76 Aligned_cols=47 Identities=19% Similarity=0.216 Sum_probs=27.5
Q ss_pred EEcHHHHHHHHHHHHhhchhchhhhhhhh--ccccceeHHHHHHhcccc
Q psy11008 40 YISQEELNSVATFIKQRGREELNSVATFI--KQKGRVSVSELVENSNQL 86 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~rgr~~~~~~~~~~--~~~GRVsi~eL~~~sN~l 86 (96)
+||.+|+..+..-+..-..+++..+-.-+ ...|+|+..|+.....+.
T Consensus 27 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~ 75 (86)
T 2opo_A 27 KISSSELGDALKTLGSVTPDEVRRMMAEIDTDGDGFISFDEFTDFARAN 75 (86)
T ss_dssp EEEHHHHHHHHHTTTTCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHC
Confidence 68888887665433211123333333332 357999999998876554
No 328
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=45.66 E-value=15 Score=20.39 Aligned_cols=14 Identities=7% Similarity=0.328 Sum_probs=12.0
Q ss_pred EeeCCCceEEEcHH
Q psy11008 31 VIDDRGKFIYISQE 44 (96)
Q Consensus 31 ViDDRGKfIyIs~e 44 (96)
++|..|+++|+++.
T Consensus 34 ~~d~~g~i~~~N~~ 47 (125)
T 3fc7_A 34 HLTTNGTILSVNPS 47 (125)
T ss_dssp EEETTSBEEEECHH
T ss_pred EEcCCCeEEEECHH
Confidence 46899999999874
No 329
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=45.54 E-value=56 Score=24.76 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=41.5
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHH
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVA 50 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va 50 (96)
+|.+.||++.+.+---+..|.++|.|+..-..|.-|-.+|+.-...+.
T Consensus 50 ~l~~~~Gi~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~~g~~~l~ 97 (266)
T 3l09_A 50 SFVERMGLQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSDSALTQTR 97 (266)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHH
T ss_pred HHHHHcCCCchHHHHHHHHHHHCCCeeeeecCCcceEEECHHHHHHHH
Confidence 578899999999999999999999999987777788889987666553
No 330
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=45.52 E-value=63 Score=21.28 Aligned_cols=46 Identities=17% Similarity=0.283 Sum_probs=34.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
.++|..+|+++. -|.--++.|-|.-.-.+.|.|=|.|++++..+..
T Consensus 4 ~e~A~~~gvs~~----tLR~ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~ 49 (135)
T 1q06_A 4 SDVAKITGLTSK----AIRFYEEKGLVTPPMRSENGYRTYTQQHLNELTL 49 (135)
T ss_dssp HHHHHHHTCCHH----HHHHHHHTTCSCCCEECTTSCEECCHHHHHHHHH
T ss_pred HHHHHHHCcCHH----HHHHHHHCCCCCCCccCCCCCeeeCHHHHHHHHH
Confidence 478999999764 4556788999987754566677789999887653
No 331
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=45.28 E-value=8.5 Score=25.64 Aligned_cols=48 Identities=19% Similarity=0.426 Sum_probs=38.8
Q ss_pred CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHh
Q psy11008 35 RGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVEN 82 (96)
Q Consensus 35 RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~ 82 (96)
+++||.+|+.-+..||+.|+-+--++--..-.|...|+---+..|.++
T Consensus 6 ~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~~~pkkaa~~v~klL~s 53 (110)
T 1i4j_A 6 IARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLES 53 (110)
T ss_dssp EEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHH
T ss_pred EeCCccCCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 589999999999999999998866666667778888887777665543
No 332
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=44.82 E-value=12 Score=24.30 Aligned_cols=15 Identities=20% Similarity=0.543 Sum_probs=13.6
Q ss_pred EcHHHHHHHHHHHHh
Q psy11008 41 ISQEELNSVATFIKQ 55 (96)
Q Consensus 41 Is~eEl~~Va~fI~~ 55 (96)
+|++|+.+|+.||..
T Consensus 168 Ls~~ei~~l~~yl~s 182 (183)
T 1h1o_A 168 ITVAQMKDVAAYLSS 182 (183)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHh
Confidence 799999999999975
No 333
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=44.67 E-value=12 Score=21.87 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=26.6
Q ss_pred EEcHHHHHHHHHHHHhhchhchhhhhhhh--ccccceeHHHHHHhccc
Q psy11008 40 YISQEELNSVATFIKQRGREELNSVATFI--KQKGRVSVSELVENSNQ 85 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~rgr~~~~~~~~~~--~~~GRVsi~eL~~~sN~ 85 (96)
+|+.+|+..+..-+. -..+++..+-.-+ ...|+|+..|+.....+
T Consensus 43 ~I~~~El~~~l~~~g-~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~~ 89 (91)
T 2pmy_A 43 RLEREEFRALCTELR-VRPADAEAVFQRLDADRDGAITFQEFARGFLG 89 (91)
T ss_dssp SEEHHHHHHHHHHTT-CCHHHHHHHHHHHCTTCSSEECHHHHTHHHHH
T ss_pred CCcHHHHHHHHHHcC-cCHHHHHHHHHHhCCCCCCCEeHHHHHHHHHH
Confidence 578888877654332 1223333333322 35789999999876554
No 334
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=44.12 E-value=77 Score=23.51 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=42.5
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHH-HHHHHHHHHhh
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEE-LNSVATFIKQR 56 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eE-l~~Va~fI~~r 56 (96)
.||...|++-..+---|..||++|.+.=|-=-+-.|.-+++++ +++|++|++.-
T Consensus 29 ~Iak~LGlShg~aq~~Ly~LeREG~V~~Vk~GK~ayw~L~~s~y~~kV~dilrel 83 (165)
T 2vxz_A 29 LIQQRLGLSHGRAKALIYVLEKEGRVTRVAFGNVALVCLSMDQYRQLVDGMIREV 83 (165)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHTTSCEEEEETTEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHhcCceEEEEEccEEEEEecHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999998865555566666554 45677777654
No 335
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=43.69 E-value=6.6 Score=26.18 Aligned_cols=48 Identities=19% Similarity=0.308 Sum_probs=37.2
Q ss_pred CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHh
Q psy11008 35 RGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVEN 82 (96)
Q Consensus 35 RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~ 82 (96)
+|+|+.+|+.-+..||+.|+-.--++--..-.|...|+--.+..+.++
T Consensus 6 ~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~f~pkkaa~~v~k~L~s 53 (110)
T 3r8s_S 6 KHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLES 53 (110)
T ss_dssp EEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred EeCCccCcHHHHHHHHHHHcCCcHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 589999999999999999997765565556667777776666665543
No 336
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=43.42 E-value=27 Score=23.56 Aligned_cols=49 Identities=12% Similarity=0.269 Sum_probs=38.3
Q ss_pred hCCChHHHHHHHHHHHHcCCccEEeeC---CC---ceEEEcHHHHHHHHHHHHhh
Q psy11008 8 FRMKTQSVIDRIVELQKTGALTGVIDD---RG---KFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 8 F~lktq~vI~RI~eL~~~g~ltGViDD---RG---KfIyIs~eEl~~Va~fI~~r 56 (96)
++++...+---++.|++.|-|+...++ .| ||..||+.-...+..++..-
T Consensus 64 ~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~~ 118 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLW 118 (138)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 468888888899999999999997653 23 68889998777777766554
No 337
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=43.34 E-value=13 Score=27.53 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=18.3
Q ss_pred HHHcCCccEEeeCCCceEEEcH
Q psy11008 22 LQKTGALTGVIDDRGKFIYISQ 43 (96)
Q Consensus 22 L~~~g~ltGViDDRGKfIyIs~ 43 (96)
|++.+.+.-|+|..|+++|+|+
T Consensus 92 l~a~~~~i~v~~~~G~i~yvs~ 113 (361)
T 4f3l_A 92 LEALDGFFLAIMTDGSIIYVSE 113 (361)
T ss_dssp HHHTTEEEEEEETTSBEEEECT
T ss_pred HHhcCceEEEEcCCccEEEEec
Confidence 5666777778999999999986
No 338
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=43.24 E-value=12 Score=28.35 Aligned_cols=70 Identities=24% Similarity=0.219 Sum_probs=47.3
Q ss_pred hhhhhhh----CCChHHHHHHHHHHHHcCCccEEeeCCCc-eEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeH
Q psy11008 2 EDLAALF----RMKTQSVIDRIVELQKTGALTGVIDDRGK-FIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSV 76 (96)
Q Consensus 2 edLAa~F----~lktq~vI~RI~eL~~~g~ltGViDDRGK-fIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi 76 (96)
+||-..+ -++.+|+..-|+.|..- .=..|++=.|+ ||.-.|.|++....-|-+- +..+|.||+
T Consensus 117 ~el~~~~~r~~~IS~dDi~rAik~L~~L-~gf~v~~v~g~~~vqsvp~el~~D~~~vLe~-----------a~~~g~vt~ 184 (233)
T 1u5t_A 117 QELEKVHFRKLNVGLDDLEKSIDMLKSL-ECFEIFQIRGKKFLRSVPNELTSDQTKILEI-----------CSILGYSSI 184 (233)
T ss_dssp HHHHHTTTTTTTCCHHHHHHHHHHHTTT-CCCCEEEETTEEEECCSSSCCCTTHHHHHHT-----------TTTTSCCBH
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHhhhc-cCeEEEEECCEEEEEeCCCccchHHHHHHHH-----------HHhcCcCcH
Confidence 3444444 47889999999999876 33447773455 6666777777666555433 234699999
Q ss_pred HHHHHhc
Q psy11008 77 SELVENS 83 (96)
Q Consensus 77 ~eL~~~s 83 (96)
++|..+-
T Consensus 185 ~~L~~~l 191 (233)
T 1u5t_A 185 SLLKANL 191 (233)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998653
No 339
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=43.11 E-value=14 Score=23.59 Aligned_cols=16 Identities=25% Similarity=0.549 Sum_probs=15.1
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+.+|+.||+.-
T Consensus 117 Ls~~ei~~l~ayl~~l 132 (146)
T 3o0r_C 117 LSEGQVDDLAEFLKWS 132 (146)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHh
Confidence 7999999999999976
No 340
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=43.07 E-value=13 Score=23.68 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=15.7
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 74 ~Lsd~ei~~l~~Yl~~~ 90 (131)
T 1c52_A 74 QLKDEEIAAVLNHIATA 90 (131)
T ss_dssp TSCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 58999999999999986
No 341
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=42.33 E-value=69 Score=20.85 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=38.9
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEee--CCCceEEEcHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVID--DRGKFIYISQEELNSVATF 52 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViD--DRGKfIyIs~eEl~~Va~f 52 (96)
-+||...+|.-.-+-.-+..|++.|-+.=..+ -|| ++-+|++-...+++.
T Consensus 40 ~eLa~~l~l~~stLsR~l~rLe~~GLV~r~~~~D~R~-~v~LT~~G~~~l~~~ 91 (96)
T 2obp_A 40 PKIAKRAQLPMSVLRRVLTQLQAAGLADVSVEADGRG-HASLTQEGAALAAQL 91 (96)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTSCE-EEEECHHHHHHHHHH
T ss_pred HHHHHHhCCchhhHHHHHHHHHHCCCEEeecCCCCce-eEEECHHHHHHHHHh
Confidence 47888899977777777899999999875444 466 589999988777654
No 342
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=42.13 E-value=12 Score=24.84 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=37.9
Q ss_pred CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHh
Q psy11008 35 RGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVEN 82 (96)
Q Consensus 35 RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~ 82 (96)
.++||.+|+.-+..||+.|+-+--++--..-.|...|+---+..|.++
T Consensus 2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~f~pkkaa~~v~klL~s 49 (110)
T 2ftc_M 2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLE 49 (110)
T ss_pred CcccceeCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 479999999999999999998866666666678777776666666544
No 343
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=42.11 E-value=7.8 Score=24.40 Aligned_cols=13 Identities=23% Similarity=0.281 Sum_probs=6.4
Q ss_pred ccceeHHHHHHhc
Q psy11008 71 KGRVSVSELVENS 83 (96)
Q Consensus 71 ~GRVsi~eL~~~s 83 (96)
.|.||..||.+..
T Consensus 137 ~G~I~~~E~~~~l 149 (191)
T 3khe_A 137 SGKITNEELGRLF 149 (191)
T ss_dssp SSEECHHHHHHHT
T ss_pred cCcCCHHHHHHHH
Confidence 3555555554443
No 344
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=41.65 E-value=25 Score=23.15 Aligned_cols=38 Identities=21% Similarity=0.038 Sum_probs=32.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIY 40 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy 40 (96)
++||..++++..-+-+=+..|.+.|-|..+-. .|-|.-
T Consensus 27 ~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~L 64 (145)
T 1xd7_A 27 EIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASL 64 (145)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCcee
Confidence 68999999999888888999999999988877 666654
No 345
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=41.47 E-value=35 Score=23.47 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=32.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIY 40 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy 40 (96)
++||..++++..-+..=++.|.+.|-+..+-...|-|.-
T Consensus 48 ~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 86 (159)
T 3lwf_A 48 RSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVL 86 (159)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEE
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEe
Confidence 689999999999888889999999999888665555554
No 346
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=41.30 E-value=18 Score=22.70 Aligned_cols=31 Identities=16% Similarity=0.342 Sum_probs=21.6
Q ss_pred EEEcHHHHHHHHHHHHhhchhchhhhhhhhcccc---ceeHHHHHHhcc
Q psy11008 39 IYISQEELNSVATFIKQRGREELNSVATFIKQKG---RVSVSELVENSN 84 (96)
Q Consensus 39 IyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~G---RVsi~eL~~~sN 84 (96)
+-++++--..+-.+|++. | ++|..||++..+
T Consensus 5 ~s~~~~~~~~IL~~L~~~---------------~pg~~~t~~eLA~~Lg 38 (81)
T 1qbj_A 5 LSIYQDQEQRILKFLEEL---------------GEGKATTAHDLSGKLG 38 (81)
T ss_dssp -CHHHHHHHHHHHHHHHH---------------CTTCCBCHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHc---------------CCCCCcCHHHHHHHHC
Confidence 344555556667777777 8 899999988765
No 347
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=41.20 E-value=17 Score=21.70 Aligned_cols=16 Identities=6% Similarity=0.461 Sum_probs=13.8
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
.|++|+.+|+.||+..
T Consensus 84 ~s~~di~~l~aYl~sl 99 (100)
T 1qn2_A 84 SDPKKVDDIIAYLKTK 99 (100)
T ss_dssp CCHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhc
Confidence 3799999999999863
No 348
>4dj3_A Period circadian protein homolog 3; PAS domain, circadian rhythm, protein binding; 2.50A {Mus musculus}
Probab=41.18 E-value=8.4 Score=29.22 Aligned_cols=50 Identities=16% Similarity=0.285 Sum_probs=31.6
Q ss_pred HHHcCCccEEee-CCCceEEEcHHHHHHHHHHHHhhchhch--hhhhhhhccccceeH
Q psy11008 22 LQKTGALTGVID-DRGKFIYISQEELNSVATFIKQRGREEL--NSVATFIKQKGRVSV 76 (96)
Q Consensus 22 L~~~g~ltGViD-DRGKfIyIs~eEl~~Va~fI~~rgr~~~--~~~~~~~~~~GRVsi 76 (96)
|++.+..--|++ |+|+++|+|+. ++.++.-. .++| .|+..|+.+..|-.+
T Consensus 32 L~aldgF~~vvs~~~G~i~yvS~~----~~~~Lg~~-~~el~g~s~~d~ihp~D~~~f 84 (317)
T 4dj3_A 32 SKNTDTFAAVFSFLSGRLVHISEQ----AALILNSK-RGFLKSVHFVDLLAPQDVRAF 84 (317)
T ss_dssp TSCTTEEEEEEETTTCBEEEECTT----HHHHTTCC-HHHHHTSBGGGGBCGGGHHHH
T ss_pred HhccCCEEEEEEcCCcEEEEECCH----HHHHcCCC-HHHHcCCchhhhcChhhHHHH
Confidence 566677777888 57999999974 44444322 2333 356667766665544
No 349
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=41.10 E-value=9.5 Score=27.27 Aligned_cols=58 Identities=17% Similarity=0.292 Sum_probs=41.5
Q ss_pred hhhhhCC--ChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhh-----ccccce
Q psy11008 4 LAALFRM--KTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGREELNSVATFI-----KQKGRV 74 (96)
Q Consensus 4 LAa~F~l--ktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~-----~~~GRV 74 (96)
+-+.+.- +...+|.-++..|+. |=||+++-++.||+.+.-- +-+...||||- +++||-
T Consensus 14 ii~~y~~~~~~~~li~~L~~~Q~~------------~G~l~~~~~~~iA~~l~l~-~~~V~~VatFY~~f~~~P~gk~ 78 (181)
T 3i9v_2 14 TFAKYPPEGRRAAIMPLLRRVQQE------------EGWIRPERIEEIARLVGTT-PTEVMGVASFYSYYQFVPTGKY 78 (181)
T ss_dssp HHTTSCTTCCGGGHHHHHHHHHHH------------HSSCCHHHHHHHHHHHTSC-HHHHHHHHTTCSSCCSSCCCSE
T ss_pred HHHHCCCCCChhHHHHHHHHHHHH------------hCCCCHHHHHHHHHHhCcC-HHHHHHHHhHHhhcCCCCCCCE
Confidence 3344443 455666666666654 2299999999999999766 78899999985 456764
No 350
>1uhk_A Aequorin 2, aequorin; EF-hand motif, complex, luminescent protein; HET: CZN; 1.60A {Aequorea victoria} SCOP: a.39.1.5 PDB: 1ej3_A* 1uhi_A* 1uhj_A* 1uhh_A* 1sl8_A
Probab=41.09 E-value=37 Score=21.12 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=31.4
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHhcccce
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVENSNQLV 87 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~sN~lI 87 (96)
+||.+|+..+..-+... ..++++.+...+ ...|+||..|+++......
T Consensus 125 ~Is~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~eF~~~~~~~~ 175 (191)
T 1uhk_A 125 AITLDEWKAYTKAAGIIQSSEDCEETFRVCDIDESGQLDVDEMTRQHLGFW 175 (191)
T ss_dssp EECHHHHHHHHHHHTSCCSHHHHHHHHHHSCCCTTSCEEHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHh
Confidence 68999998876554321 133444444443 3579999999998776644
No 351
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=40.83 E-value=22 Score=27.25 Aligned_cols=28 Identities=7% Similarity=0.217 Sum_probs=24.1
Q ss_pred hhhhhhh--CCChHHHHHHHHHHHHcCCcc
Q psy11008 2 EDLAALF--RMKTQSVIDRIVELQKTGALT 29 (96)
Q Consensus 2 edLAa~F--~lktq~vI~RI~eL~~~g~lt 29 (96)
.+||..| +++..-+.+=+.+||+.|.|.
T Consensus 40 ~~La~~~~l~VS~aTIRrDL~~LE~~GlL~ 69 (338)
T 1stz_A 40 QRVLEVSNIEFSSATIRNDMKKLEYLGYIY 69 (338)
T ss_dssp HHHHHHSCCCSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 5799999 887777778899999999986
No 352
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=40.75 E-value=16 Score=23.86 Aligned_cols=17 Identities=12% Similarity=0.223 Sum_probs=15.4
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||.+.
T Consensus 106 ~Lsd~ei~~laaYl~~~ 122 (135)
T 1e29_A 106 NYTEDDIFDVAGYTLIA 122 (135)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 37999999999999876
No 353
>2rem_A Disulfide oxidoreductase; disulfide oxidoreductase, DSBA, thioredoxin fold, redox- active center; 1.90A {Xylella fastidiosa}
Probab=40.73 E-value=41 Score=21.65 Aligned_cols=53 Identities=13% Similarity=0.295 Sum_probs=28.5
Q ss_pred hhhhhhhCCChHHH------------HHHHH----HHHHcCCccEEeeCCCceEEE--cHHHHHHHHHHHHhh
Q psy11008 2 EDLAALFRMKTQSV------------IDRIV----ELQKTGALTGVIDDRGKFIYI--SQEELNSVATFIKQR 56 (96)
Q Consensus 2 edLAa~F~lktq~v------------I~RI~----eL~~~g~ltGViDDRGKfIyI--s~eEl~~Va~fI~~r 56 (96)
.++|...|+..+.+ ++.-. ++--.|.-|=++| |+++.- +.+++.++-+.+..+
T Consensus 115 ~~~a~~~Gld~~~~~~~~~~~~~~~~v~~~~~~a~~~gv~gtPt~vin--g~~~~~g~~~~~l~~~i~~~~~~ 185 (193)
T 2rem_A 115 AVFYAGYGVQPDRFVATFNGPEVEKRFQAARAYALKVRPVGTPTIVVN--GRYMVTGHDFEDTLRITDYLVSR 185 (193)
T ss_dssp HHHHHTTTCCHHHHHHHHTSHHHHHHHHHHHHHHHHHCCSSSSEEEET--TTEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHhChHHHHHHHHHHHHHHHhCCCCCCeEEEC--CEEEecCCCHHHHHHHHHHHHHH
Confidence 45777888876532 22211 2222455554664 665521 567777666655544
No 354
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=40.50 E-value=43 Score=18.41 Aligned_cols=29 Identities=7% Similarity=0.163 Sum_probs=21.7
Q ss_pred EEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHhc
Q psy11008 39 IYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVENS 83 (96)
Q Consensus 39 IyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~s 83 (96)
|.+.++-.+.+..+-++. || |.++|++.+
T Consensus 8 irl~~~l~~~l~~lA~~~---------------~r-s~s~lir~A 36 (52)
T 2gpe_A 8 VKLDDATRERIKSAATRI---------------DR-TPHWLIKQA 36 (52)
T ss_dssp EEEEHHHHHHHHHHHHHT---------------TC-CHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHH---------------Cc-CHHHHHHHH
Confidence 567788888888888888 65 777777654
No 355
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=40.33 E-value=25 Score=21.13 Aligned_cols=13 Identities=8% Similarity=0.189 Sum_probs=7.8
Q ss_pred ccccceeHHHHHH
Q psy11008 69 KQKGRVSVSELVE 81 (96)
Q Consensus 69 ~~~GRVsi~eL~~ 81 (96)
...|+||..|+..
T Consensus 130 d~dg~i~~~eF~~ 142 (146)
T 2qac_A 130 SSEDNIDYKLFCE 142 (146)
T ss_dssp CSSSEEEHHHHHH
T ss_pred CCCCcCcHHHHHH
Confidence 4556666666654
No 356
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=40.33 E-value=17 Score=25.00 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=33.2
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEE
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYI 41 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyI 41 (96)
-||..|+++-.-+-.-|++|++.|.|.=|.-.+.-.||.
T Consensus 65 vlseRlkI~gSLAR~aLreL~~kGlIk~V~kh~~q~IYT 103 (108)
T 3iz6_V 65 VLSERLRINGSLARQAIKDLESRGAIRVVSVHSSQLIYT 103 (108)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTSCEECCCTTSCCEE
T ss_pred HHHhhhcccHHHHHHHHHHHHHCCCEEEEecCCCEEEEe
Confidence 367777787777777799999999999998899999996
No 357
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=40.18 E-value=17 Score=22.11 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=14.3
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+..|+.||+..
T Consensus 95 ls~~ei~~l~aYl~~l 110 (112)
T 1ccr_A 95 XKPQERADLISYLKEA 110 (112)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 4999999999999864
No 358
>3luq_A Sensor protein; PAS, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: PGE; 2.49A {Geobacter sulfurreducens}
Probab=39.77 E-value=32 Score=18.32 Aligned_cols=19 Identities=16% Similarity=0.322 Sum_probs=14.6
Q ss_pred CCccEEeeCCCceEEEcHH
Q psy11008 26 GALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 26 g~ltGViDDRGKfIyIs~e 44 (96)
....-++|..|+++|+++.
T Consensus 13 ~~~i~~~d~~g~i~~~N~~ 31 (114)
T 3luq_A 13 PAALAMFDREMRYLAVSRR 31 (114)
T ss_dssp SSEEEEEETTCBEEEECHH
T ss_pred CceEEEEcCCcEEEEECHH
Confidence 3344568999999999975
No 359
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=39.69 E-value=8.7 Score=29.36 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=38.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEEL 46 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl 46 (96)
.|||...|++...|-+-++.|++.|-+.-.-....+|.-++++++
T Consensus 36 ~eia~~~gv~~~~Vy~~L~~L~~~GlV~~~~g~p~~y~av~p~~~ 80 (342)
T 3qph_A 36 KEISTKSGIPYNRVYDTISSLKLRGFVTEIEGTPKVYAAYSPRIA 80 (342)
T ss_dssp SCCSSSTTSSSCSCCHHHHHHHHHTSEEEECCTTCEEEECCHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCceeEEEEcCHHHH
Confidence 478999999999999999999999999866556678888888865
No 360
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=39.33 E-value=18 Score=30.42 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=32.4
Q ss_pred hCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc
Q psy11008 8 FRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS 42 (96)
Q Consensus 8 F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs 42 (96)
|..+..++-.||+.|.+.+-|.=.-||++.|.|+.
T Consensus 725 F~p~~~~IKk~Ie~LIereYleR~~~~~~~y~YlA 759 (759)
T 2hye_C 725 FPVKPGDLKKRIESLIDRDYMERDKDNPNQYHYVA 759 (759)
T ss_dssp SCCCHHHHHHHHHHHHHTTSCBCCSSCTTEEECCC
T ss_pred CCCCHHHHHHHHHHHhcccceecCCCCCCeeEecC
Confidence 88999999999999999999998888899999974
No 361
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=39.29 E-value=19 Score=21.26 Aligned_cols=17 Identities=18% Similarity=0.327 Sum_probs=14.4
Q ss_pred EEc-HHHHHHHHHHHHhh
Q psy11008 40 YIS-QEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs-~eEl~~Va~fI~~r 56 (96)
-++ ++|+.+|+.||+..
T Consensus 84 ~l~~~~ei~~l~aYl~sl 101 (103)
T 1i54_A 84 GIKKKGERQDLVAYLKSA 101 (103)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 364 99999999999875
No 362
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=38.96 E-value=16 Score=22.29 Aligned_cols=16 Identities=13% Similarity=0.235 Sum_probs=14.3
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+.+|+.||+..
T Consensus 97 ls~~ei~~l~aYl~sl 112 (114)
T 2w9k_A 97 KKPQERADVIAYLETL 112 (114)
T ss_dssp CCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6899999999999864
No 363
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=38.95 E-value=16 Score=23.90 Aligned_cols=16 Identities=13% Similarity=0.549 Sum_probs=14.1
Q ss_pred EEcHHHHHHHHHHHHh
Q psy11008 40 YISQEELNSVATFIKQ 55 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~ 55 (96)
.+|++|+.+|+.||+.
T Consensus 173 ~Ls~~ei~~l~~Yl~s 188 (190)
T 1m70_A 173 KLSNKDIEALSSYIQG 188 (190)
T ss_dssp TCCHHHHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHh
Confidence 3899999999999975
No 364
>2ct9_A Calcium-binding protein P22; EF-hand, metal binding protein; 2.20A {Rattus norvegicus} PDB: 2e30_A
Probab=38.78 E-value=49 Score=21.47 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=29.1
Q ss_pred EEcHHHHHHHHHHH-H-hhchhchhhh----hhhh--ccccceeHHHHHHhccc
Q psy11008 40 YISQEELNSVATFI-K-QRGREELNSV----ATFI--KQKGRVSVSELVENSNQ 85 (96)
Q Consensus 40 yIs~eEl~~Va~fI-~-~rgr~~~~~~----~~~~--~~~GRVsi~eL~~~sN~ 85 (96)
|||.+|+..+..-+ . .-..++++.+ -..+ ...|+||..|++....+
T Consensus 129 ~Is~~El~~~l~~~~g~~~s~~~~~~l~~~~~~~~D~d~dG~Is~~EF~~~~~~ 182 (208)
T 2ct9_A 129 KISRDELLQVLRMMVGVNISDEQLGSIADRTIQEADQDGDSAISFTEFVKVLEK 182 (208)
T ss_dssp EECHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCSSSSSSEEHHHHHHTTTT
T ss_pred EEcHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHhc
Confidence 68999998876643 1 1123344443 1222 45799999999987654
No 365
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=38.27 E-value=27 Score=21.12 Aligned_cols=45 Identities=20% Similarity=0.369 Sum_probs=26.7
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHhcc
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVENSN 84 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~sN 84 (96)
+||.+|+..+..-+... ..+++..+...+ ...|+||..|+++...
T Consensus 107 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~ 154 (158)
T 2jnf_A 107 YISTDVMREILAELDETLSSEDLDAMIDEIDADGSGTVDFEEFMGVMT 154 (158)
T ss_dssp SEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCSSCCSEECSHHHHHHTS
T ss_pred eEcHHHHHHHHHHhCCcCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHh
Confidence 58888888766543211 123344433333 3578999999887654
No 366
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=38.13 E-value=27 Score=18.89 Aligned_cols=47 Identities=11% Similarity=0.152 Sum_probs=28.3
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHhcccc
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVENSNQL 86 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~sN~l 86 (96)
+|+.+|+..+..-+... ..+++..+-..+ ...|.|+..|+.....+.
T Consensus 23 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~ 72 (77)
T 2joj_A 23 SIDYHELKVAMRALGFDVKKPEILELMNEYDREGNGYIGFDDFLDIMTEK 72 (77)
T ss_dssp EEEHHHHHHHHHHHTCCCHHHHHHHHHHHHCCSSSSEEEHHHHHHHHTHH
T ss_pred CCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 68889988776554211 122333333333 357899999998766543
No 367
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=38.09 E-value=20 Score=21.50 Aligned_cols=17 Identities=18% Similarity=0.434 Sum_probs=14.7
Q ss_pred EE-cHHHHHHHHHHHHhh
Q psy11008 40 YI-SQEELNSVATFIKQR 56 (96)
Q Consensus 40 yI-s~eEl~~Va~fI~~r 56 (96)
-+ |++|+.+|+.||+..
T Consensus 89 ~l~s~~ei~~l~aYl~sl 106 (108)
T 1ycc_A 89 GLKKEKDRNDLITYLKKA 106 (108)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 35 899999999999875
No 368
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=38.01 E-value=67 Score=21.32 Aligned_cols=33 Identities=15% Similarity=0.076 Sum_probs=27.9
Q ss_pred CCChHHHHHHHHHHHHcCCccEEeeCCCceEEE
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVIDDRGKFIYI 41 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyI 41 (96)
++...-|-.-++.|++.|.+.-+-.+.|+.-|-
T Consensus 58 ~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 90 (150)
T 2xig_A 58 NTSISSVYRILNFLEKENFISVLETSKSGRRYE 90 (150)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEE
T ss_pred CCCHhhHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 677778888899999999999888888877774
No 369
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=37.97 E-value=14 Score=19.76 Aligned_cols=44 Identities=27% Similarity=0.302 Sum_probs=24.4
Q ss_pred EEcHHHHHHHHHHHHh-hchhchhhhhhhh--ccccceeHHHHHHhc
Q psy11008 40 YISQEELNSVATFIKQ-RGREELNSVATFI--KQKGRVSVSELVENS 83 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~-rgr~~~~~~~~~~--~~~GRVsi~eL~~~s 83 (96)
+||.+|+..+..-+.. -..+++..+...+ ...|+|+..|+....
T Consensus 22 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~ 68 (71)
T 2b1u_A 22 HITVDELRRAMAGLGQPLPQEELDAMIREADVDQDGRVNYEEFARML 68 (71)
T ss_dssp EEEHHHHHHHGGGTTCSSCHHHHHHHHHHCCSSSSSEEETTHHHHHH
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 6888888766543311 1122333333332 356889998887654
No 370
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=37.86 E-value=13 Score=24.98 Aligned_cols=16 Identities=13% Similarity=0.341 Sum_probs=13.2
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+.+||.||..+
T Consensus 158 Lsd~eI~alaaY~~S~ 173 (174)
T 3vrd_A 158 EGEDGLDALFAFYASQ 173 (174)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHc
Confidence 6888999999988764
No 371
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=37.81 E-value=90 Score=20.88 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=33.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
.++|..+|+++. -|.--++.|-|.-.--+.|.|=|-|++++..+..
T Consensus 20 ~evA~~~gvs~~----tLR~Ye~~Gll~p~~r~~~g~R~Y~~~dl~~l~~ 65 (148)
T 3gpv_A 20 GQVAKMQHLTIS----QIRYYDKQGLFPFLQRNEKGDRIFNEEALKYLEM 65 (148)
T ss_dssp HHHHHHTTCCHH----HHHHHHHTTCCTTCEECTTCCEEBCHHHHHHHHH
T ss_pred HHHHHHHCcCHH----HHHHHHHCCCCCCCcCCCCCCeecCHHHHHHHHH
Confidence 478899999754 4567789999974444456677779999987654
No 372
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=37.73 E-value=18 Score=23.83 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=15.5
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||...
T Consensus 132 ~Lsd~ei~~laaYl~sl 148 (163)
T 1w5c_T 132 NLTEKDLVAIAGHILVE 148 (163)
T ss_dssp TCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 48999999999999876
No 373
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=37.65 E-value=91 Score=20.92 Aligned_cols=46 Identities=11% Similarity=0.127 Sum_probs=34.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
.++|..+|+++. -|.--++.|-|.-+--+.|.|=|.|++++..+..
T Consensus 8 ~evA~~~Gvs~~----tLR~ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~ 53 (146)
T 3hh0_A 8 SEFASVGDVTVR----ALRYYDKINLLKPSDYTEGGHRLYTKDDLYVLQQ 53 (146)
T ss_dssp HHHHHHHTCCHH----HHHHHHHTTSSCCSEECTTSCEEBCHHHHHHHHH
T ss_pred HHHHHHHCcCHH----HHHHHHHCCCCCCCeECCCCCEeeCHHHHHHHHH
Confidence 478999999764 4567788999987754456677779999987754
No 374
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=37.65 E-value=63 Score=20.15 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=19.5
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHH
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI 53 (96)
.|+...+++.+++-.-.+.+-.. |..| +||.+|+..+...+
T Consensus 15 ~l~~~~~~~~~~i~~~~~~fd~~-------~~~G---~i~~~e~~~~l~~~ 55 (190)
T 1fpw_A 15 CLKQSTYFDRREIQQWHKGFLRD-------CPSG---QLAREDFVKIYKQF 55 (190)
T ss_dssp HHTTTCCSTHHHHHHHHHHHHHH-------CTTC---CEEHHHHHHHHHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHH-------CCCC---cCcHHHHHHHHHHH
Confidence 45555566555544433333332 1233 45666666554433
No 375
>1juo_A Sorcin; calcium-binding proteins, penta-EF-hand, PEF, X-RAY, metal transport; 2.20A {Homo sapiens} SCOP: a.39.1.8 PDB: 2jc2_A
Probab=37.27 E-value=35 Score=22.02 Aligned_cols=44 Identities=18% Similarity=0.339 Sum_probs=21.5
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhhccccceeHHHHHHhc
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFIKQKGRVSVSELVENS 83 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~~~~GRVsi~eL~~~s 83 (96)
+||.+|+..+..-+... ..++++.+...+...|+|+..|+....
T Consensus 119 ~I~~~el~~~l~~~g~~~~~~~~~~l~~~~d~dg~i~~~eF~~~~ 163 (198)
T 1juo_A 119 TVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIACC 163 (198)
T ss_dssp EECHHHHHHHHHHTTCCCCHHHHHHHHHHTCSSSSEEHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCeEcHHHHHHHH
Confidence 56777766554332111 122333332222556777777776543
No 376
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=37.24 E-value=1e+02 Score=24.72 Aligned_cols=83 Identities=12% Similarity=0.081 Sum_probs=58.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEc-HHH------HHHHHHHHHhhchhchhhhhhhhccccce
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYIS-QEE------LNSVATFIKQRGREELNSVATFIKQKGRV 74 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs-~eE------l~~Va~fI~~rgr~~~~~~~~~~~~~GRV 74 (96)
.+|+...+|+...|-.=+--|...+-+.=..+++|...|.- .+. ...+..+|+++=.++-..+...|-+.||+
T Consensus 37 ~~I~~~t~L~~~~Vk~~L~vLIQh~lV~~~~~~~~~~~Y~~~~~~il~~lR~pk~l~~i~~~~G~~a~~I~~~ll~~G~~ 116 (534)
T 2xub_A 37 RVIAHDTGTSLDQVKKALCVLVQHNLVSYQVHKRGVVEYEAQCSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKL 116 (534)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTTEEEEEECHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHCCB
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCeeEEeCCCCcEEEEEChhhHHHHHhhHHHHHHHHHHhcHHHHHHHHHHHHcCCc
Confidence 46788889999999999999999999976666777555543 333 34455556555333444455556677999
Q ss_pred eHHHHHHhcc
Q psy11008 75 SVSELVENSN 84 (96)
Q Consensus 75 si~eL~~~sN 84 (96)
+++++.+.+.
T Consensus 117 t~~~ll~~~~ 126 (534)
T 2xub_A 117 TMSAVVKKVA 126 (534)
T ss_dssp CHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 9999977664
No 377
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=36.97 E-value=53 Score=21.26 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=30.7
Q ss_pred hhhhhhh-----CCChHHHHHHHHHHHHcCCccEEeeCCCceEEE
Q psy11008 2 EDLAALF-----RMKTQSVIDRIVELQKTGALTGVIDDRGKFIYI 41 (96)
Q Consensus 2 edLAa~F-----~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyI 41 (96)
+||...+ +++..-|-.-++.|++.|.+.-+-.+.|+.-|-
T Consensus 38 ~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 82 (136)
T 1mzb_A 38 EDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDGGHAVFE 82 (136)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSSSSCEEE
T ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 3555555 677777888899999999999888777776663
No 378
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=36.92 E-value=23 Score=23.00 Aligned_cols=25 Identities=36% Similarity=0.525 Sum_probs=22.2
Q ss_pred eeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 32 IDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 32 iDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
-|+.-+.+++|++--+.|..|++++
T Consensus 51 ~~~~kr~~~V~~~gh~~vk~f~k~~ 75 (80)
T 3dgp_A 51 KDDKKKKFFISKEGNSQVLDFAKRK 75 (80)
T ss_dssp EETTTTEEEEEGGGHHHHHHHHTTC
T ss_pred ecCCccEEEEeccchHHHHHHHHHH
Confidence 3888999999999999999999887
No 379
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=36.80 E-value=20 Score=21.64 Aligned_cols=15 Identities=20% Similarity=0.483 Sum_probs=14.0
Q ss_pred cHHHHHHHHHHHHhh
Q psy11008 42 SQEELNSVATFIKQR 56 (96)
Q Consensus 42 s~eEl~~Va~fI~~r 56 (96)
|++|+.+|+.||+..
T Consensus 86 s~~ei~~l~aYl~sl 100 (107)
T 1co6_A 86 DEQKVSDLIAYIKQF 100 (107)
T ss_dssp CHHHHHHHHHHHHTB
T ss_pred CHHHHHHHHHHHHHc
Confidence 799999999999876
No 380
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=36.79 E-value=37 Score=28.78 Aligned_cols=38 Identities=18% Similarity=0.363 Sum_probs=31.9
Q ss_pred hhhhhhhC-------CChHHHHHHHHHHHHcCCccEEeeC--CCceEEE
Q psy11008 2 EDLAALFR-------MKTQSVIDRIVELQKTGALTGVIDD--RGKFIYI 41 (96)
Q Consensus 2 edLAa~F~-------lktq~vI~RI~eL~~~g~ltGViDD--RGKfIyI 41 (96)
.+||..|| +...-+.++|+.++++|.+ ++|| .|-|-|.
T Consensus 512 ~~la~~lg~~~~~~~Ws~~~A~e~L~~~e~eG~l--~rDd~~~G~~yyp 558 (566)
T 1w7p_D 512 LRLTQILSSNNSKSNWTLGILMEVLQNCVDEGDL--LIDKQLSGIYYYK 558 (566)
T ss_dssp HHHHHHHSCSSSCCCBCHHHHHHHHHHHHHTTSE--EEEEETTEEEEEE
T ss_pred HHHHHHhCCccccCcccHHHHHHHHHHHHHcCCE--EEECCCCceEEeh
Confidence 57999999 9999999999999999987 6785 4655554
No 381
>2kdk_A ARYL hydrocarbon receptor nuclear translocator-LI 2; circadian clock, PAS domain, transcription, activator, biolo rhythms, DNA-binding, nucleus; NMR {Homo sapiens}
Probab=36.72 E-value=20 Score=20.11 Aligned_cols=16 Identities=31% Similarity=0.600 Sum_probs=12.7
Q ss_pred cEEeeCCCceEEEcHH
Q psy11008 29 TGVIDDRGKFIYISQE 44 (96)
Q Consensus 29 tGViDDRGKfIyIs~e 44 (96)
.-++|..|+++|+++.
T Consensus 16 i~~~d~~g~i~~~N~~ 31 (121)
T 2kdk_A 16 ITRFAVNGKFVYVDQR 31 (121)
T ss_dssp EEEECTTSBEEEECTH
T ss_pred EEEECCCeeEEEEChh
Confidence 3456889999999874
No 382
>4f21_A Carboxylesterase/phospholipase family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.50A {Francisella tularensis subsp}
Probab=36.68 E-value=19 Score=25.28 Aligned_cols=37 Identities=16% Similarity=0.161 Sum_probs=23.7
Q ss_pred HHHHHHHcCC-ccEE-eeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 18 RIVELQKTGA-LTGV-IDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 18 RI~eL~~~g~-ltGV-iDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
-.+.|++.|. ++=. ..+-|- -|+++|++.+.+||+++
T Consensus 205 ~~~~L~~~g~~v~~~~y~g~gH--~i~~~~l~~~~~fL~k~ 243 (246)
T 4f21_A 205 LSDKLKVSGFANEYKHYVGMQH--SVCMEEIKDISNFIAKT 243 (246)
T ss_dssp HHHHHHTTTCCEEEEEESSCCS--SCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCeEEEEECCCCC--ccCHHHHHHHHHHHHHH
Confidence 3455666663 2211 223344 37999999999999987
No 383
>3fg8_A Uncharacterized protein RHA05790; PAS domain, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; HET: 3PB; 1.80A {Rhodococcus SP}
Probab=36.60 E-value=21 Score=20.72 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=12.8
Q ss_pred EEeeCCCceEEEcHH
Q psy11008 30 GVIDDRGKFIYISQE 44 (96)
Q Consensus 30 GViDDRGKfIyIs~e 44 (96)
-++|..|+++|+++.
T Consensus 26 ~~~D~~g~i~~~N~a 40 (118)
T 3fg8_A 26 MALDEDLRIIYVNSG 40 (118)
T ss_dssp EEECTTCBEEEECHH
T ss_pred EEECCCCeEEEECHH
Confidence 467999999999875
No 384
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=36.54 E-value=40 Score=20.89 Aligned_cols=26 Identities=15% Similarity=0.196 Sum_probs=22.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCC
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGA 27 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ 27 (96)
+-+|+.+|=+..+|+++-+.|++...
T Consensus 35 ~~IA~~lgRt~~eV~~~y~~L~~d~~ 60 (72)
T 2cqq_A 35 EKIAHELGRSVTDVTTKAKQLKDSVT 60 (72)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHSCC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 45888899888999999999998864
No 385
>3cs1_A Flagellar calcium-binding protein; myristoylated, palmitoylated, SEN membrane targeting, EF-hand, cell projection, cilium; 2.00A {Trypanosoma cruzi}
Probab=36.52 E-value=59 Score=21.60 Aligned_cols=44 Identities=14% Similarity=0.233 Sum_probs=25.8
Q ss_pred EEcHHHHHHHHHHHHh--hchhchhhhhhhh--ccccceeHHHHHHhc
Q psy11008 40 YISQEELNSVATFIKQ--RGREELNSVATFI--KQKGRVSVSELVENS 83 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~--rgr~~~~~~~~~~--~~~GRVsi~eL~~~s 83 (96)
|||.+|+..+..-+.. -..++++.+-.-+ ...|+||..|++...
T Consensus 146 ~Is~~El~~~l~~~g~~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~~ 193 (219)
T 3cs1_A 146 LVDEEEFKRAVPKLEAWGAKVEDPAALFKELDKNGTGSVTFDEFAAWA 193 (219)
T ss_dssp EEEHHHHHHHHHHHHHHTCCCSCHHHHHHHHCTTSSSEEEHHHHHHHH
T ss_pred cCcHHHHHHHHHHhcccCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 6788888777655432 2223444443333 356888888877653
No 386
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=36.47 E-value=34 Score=22.71 Aligned_cols=28 Identities=7% Similarity=0.108 Sum_probs=25.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCcc
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALT 29 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~lt 29 (96)
-|||...|+...+|=..|.+|-++|.|.
T Consensus 38 geIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 38 AQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 3799999999999999999999999964
No 387
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=36.38 E-value=78 Score=21.18 Aligned_cols=46 Identities=9% Similarity=0.138 Sum_probs=34.8
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
.++|..+|+++.- |.--++.|-|.-+-.+.|.|=|.|++++..+..
T Consensus 6 ~e~A~~~gvs~~t----LR~Ye~~GLl~p~~r~~~g~R~Y~~~dl~~l~~ 51 (142)
T 3gp4_A 6 KEASEKSGVSADT----IRYYERIGLIPPIHRNESGVRKFGAEDLRWILF 51 (142)
T ss_dssp HHHHHHHTSCHHH----HHHHHHHTSSCCCCBCTTSCBCBCHHHHHHHHH
T ss_pred HHHHHHHCcCHHH----HHHHHHCCCCCCCcCCCCCCeeeCHHHHHHHHH
Confidence 4789999997643 456688899988655667777889999986643
No 388
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=36.33 E-value=23 Score=20.59 Aligned_cols=43 Identities=16% Similarity=0.204 Sum_probs=20.3
Q ss_pred EEcHHHHHHHHHHHH----hhchhchhhhhhhh--ccccceeHHHHHHh
Q psy11008 40 YISQEELNSVATFIK----QRGREELNSVATFI--KQKGRVSVSELVEN 82 (96)
Q Consensus 40 yIs~eEl~~Va~fI~----~rgr~~~~~~~~~~--~~~GRVsi~eL~~~ 82 (96)
|||.+|+..+..-+. .-..++++.+-..+ ...|+|+..|+...
T Consensus 58 ~I~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~ 106 (109)
T 1bu3_A 58 FIEEDELKLFLQVFSAGARALTDAETKAFLKAGDSDGDGAIGVDEWAAL 106 (109)
T ss_dssp SEEHHHHHTHHHHHSTTCCCCCHHHHHHHHHHHCTTCSSEECHHHHHHH
T ss_pred cCcHHHHHHHHHHHcccCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence 356666665554431 11122333332222 34567777776653
No 389
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=36.31 E-value=31 Score=23.57 Aligned_cols=39 Identities=23% Similarity=0.422 Sum_probs=32.1
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEE
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIY 40 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIy 40 (96)
++||..++++..-+-.-++.|.+.|-+..+--..|=|.-
T Consensus 32 ~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~L 70 (162)
T 3k69_A 32 RELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQL 70 (162)
T ss_dssp HHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEEC
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEe
Confidence 689999999999999999999999998877555544644
No 390
>2zp2_A Kinase A inhibitor; KIPI, histidine kinase inhibitor, ATP-binding, nucleotide- binding, protein kinase inhibitor, sporulation; 3.01A {Bacillus subtilis}
Probab=36.21 E-value=15 Score=25.96 Aligned_cols=20 Identities=25% Similarity=0.443 Sum_probs=16.8
Q ss_pred ChhhhhhhCCChHHHHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIV 20 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~ 20 (96)
|+++|++-||+.++||++.-
T Consensus 17 L~~vA~~~gls~~evi~~h~ 36 (141)
T 2zp2_A 17 LEEVAKINQLSPEEVIDIHT 36 (141)
T ss_dssp HHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHhCcCHHHHHHHHh
Confidence 57899999999999998753
No 391
>3to7_A Histone acetyltransferase ESA1; MYST family; HET: ALY COA; 1.90A {Saccharomyces cerevisiae} SCOP: d.108.1.1 PDB: 3to6_A* 1fy7_A* 1mja_A* 1mjb_A* 3to9_A* 1mj9_A*
Probab=36.15 E-value=34 Score=26.96 Aligned_cols=45 Identities=13% Similarity=0.374 Sum_probs=31.0
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCce-EEEcHHHHHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKF-IYISQEELNSVAT 51 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKf-IyIs~eEl~~Va~ 51 (96)
++|||..-||+++||+.-++. .|.|. --+|.+ |.++++-++...+
T Consensus 211 i~~is~~Tgi~~~Dii~tL~~---l~~l~---~~kg~~~i~~~~~~~~~~~k 256 (276)
T 3to7_A 211 IDEISSMTSMTTTDILHTAKT---LNILR---YYKGQHIIFLNEDILDRYNR 256 (276)
T ss_dssp HHHHHHHHCBCHHHHHHHHHH---TTCEE---EETTEEEEECCHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHH---CCCEE---EeCCcEEEEECHHHHHHHHH
Confidence 479999999999999876554 45553 235665 7778766655443
No 392
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=36.06 E-value=23 Score=20.95 Aligned_cols=19 Identities=32% Similarity=0.357 Sum_probs=15.0
Q ss_pred eEEEcHHHHHHHHHHHHhh
Q psy11008 38 FIYISQEELNSVATFIKQR 56 (96)
Q Consensus 38 fIyIs~eEl~~Va~fI~~r 56 (96)
-|.|++++|..+|.-+.+-
T Consensus 6 ~i~v~~~~l~~~A~~~~~~ 24 (99)
T 3zbh_A 6 VIRLTPEELRGVARQYNVE 24 (99)
T ss_dssp ---CCHHHHHHHHHHHHHH
T ss_pred eeecCHHHHHHHHHHHHHH
Confidence 5889999999999999877
No 393
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=35.95 E-value=24 Score=23.72 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=20.5
Q ss_pred ChhhhhhhCCChH---HHHHHHHHHHHcC
Q psy11008 1 MEDLAALFRMKTQ---SVIDRIVELQKTG 26 (96)
Q Consensus 1 ledLAa~F~lktq---~vI~RI~eL~~~g 26 (96)
||+||.+.|+..+ ..|+|-+++-+.|
T Consensus 98 leeLA~~~gid~~~L~~TV~~yN~~~~~G 126 (160)
T 2lfc_A 98 LESAAEQAGIVVDELVQTVKNYQGYVQDG 126 (160)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 5899999999865 4667778887766
No 394
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=35.93 E-value=36 Score=19.59 Aligned_cols=19 Identities=11% Similarity=0.204 Sum_probs=14.0
Q ss_pred CCccEEeeCCCceEEEcHH
Q psy11008 26 GALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 26 g~ltGViDDRGKfIyIs~e 44 (96)
...--++|..|+|+|+++.
T Consensus 21 ~d~i~~~d~~g~i~~vN~a 39 (117)
T 2r78_A 21 IDGIFIMDAEGHYLDVNPA 39 (117)
T ss_dssp SSEEEEECTTSBEEEECHH
T ss_pred CceEEEECCCCCEEEecHH
Confidence 3333457999999999874
No 395
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=35.88 E-value=14 Score=25.46 Aligned_cols=27 Identities=41% Similarity=0.736 Sum_probs=17.4
Q ss_pred EeeCCCce---EE--EcHHHHHH----HHHHHHhhc
Q psy11008 31 VIDDRGKF---IY--ISQEELNS----VATFIKQRG 57 (96)
Q Consensus 31 ViDDRGKf---Iy--Is~eEl~~----Va~fI~~rg 57 (96)
-|||.||- -| -++.|+++ +-.||++.|
T Consensus 9 niddngknfdytytvtteselqkvlnelmdyikkqg 44 (106)
T 1qys_A 9 NIDDNGKNFDYTYTVTTESELQKVLNELMDYIKKQG 44 (106)
T ss_dssp EEECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHC
T ss_pred EecCCCcccceEEEEeeHHHHHHHHHHHHHHHHhcC
Confidence 48999982 22 35666655 456777775
No 396
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=35.71 E-value=22 Score=19.47 Aligned_cols=15 Identities=20% Similarity=0.600 Sum_probs=12.4
Q ss_pred EEeeCCCceEEEcHH
Q psy11008 30 GVIDDRGKFIYISQE 44 (96)
Q Consensus 30 GViDDRGKfIyIs~e 44 (96)
=++|..|+++|+++.
T Consensus 13 ~~~d~~g~i~~~N~~ 27 (126)
T 3mjq_A 13 LIINREGRLLYANTA 27 (126)
T ss_dssp EEEETTSBEEEECTH
T ss_pred EEEeCCCcEEEEcHH
Confidence 357999999999874
No 397
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding, phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Probab=35.67 E-value=32 Score=21.42 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=19.6
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhhccccceeHHHHHHhc
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFIKQKGRVSVSELVENS 83 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~~~~GRVsi~eL~~~s 83 (96)
+||.+|+..+..-+... ..++++.+...+...|+|+..|+....
T Consensus 88 ~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d~dg~i~~~eF~~~~ 132 (167)
T 1gjy_A 88 TVDPQELQKALTTMGFRLNPQTVNSIAKRYSTSGKITFDDYIACC 132 (167)
T ss_dssp EECHHHHHHHHHTTTCCCCHHHHHHHHHHTCBTTBEEHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCCcCcHHHHHHHH
Confidence 56666665543321100 112233222222456777777666543
No 398
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=35.67 E-value=34 Score=20.69 Aligned_cols=52 Identities=13% Similarity=0.310 Sum_probs=30.3
Q ss_pred cEEee-CCCceEEEcHHHHHHHHHH-----HHhh-chhchhhhhhhh--ccccceeHHHHHHhc
Q psy11008 29 TGVID-DRGKFIYISQEELNSVATF-----IKQR-GREELNSVATFI--KQKGRVSVSELVENS 83 (96)
Q Consensus 29 tGViD-DRGKfIyIs~eEl~~Va~f-----I~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~s 83 (96)
.-.+| ..| |||.+|+..+-.- +... ..+++..+-.-+ ...|.|+..|++...
T Consensus 15 F~~fD~~dg---~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~~ 75 (96)
T 1a4p_A 15 FHKFAGDKG---YLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQCRDGKVGFQSFFSLI 75 (96)
T ss_dssp HHHHHGGGC---SBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHHHHCTTSSSCBCHHHHHHHH
T ss_pred HHHHcCCCC---eECHHHHHHHHHHHcccccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 34456 456 9999999987642 2111 123333333222 347999999987543
No 399
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=35.55 E-value=70 Score=18.96 Aligned_cols=45 Identities=13% Similarity=0.273 Sum_probs=31.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHc-CCccEEeeCCCceEEEcHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKT-GALTGVIDDRGKFIYISQEELNSVA 50 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~-g~ltGViDDRGKfIyIs~eEl~~Va 50 (96)
.++|..+|++..- |.-.++. |-+.-.-++.|.|-+.+++++..+.
T Consensus 9 ~e~A~~~gvs~~t----lR~ye~~~gl~~p~r~~~~g~R~Y~~~dl~~l~ 54 (81)
T 2jml_A 9 RTIARMTGIREAT----LRAWERRYGFPRPLRSEGNNYRVYSREEVEAVR 54 (81)
T ss_dssp HHHHHTTSTTHHH----HHHHHHHTCCSCCBSSSCSSSCEECHHHHHHHH
T ss_pred HHHHHHHCcCHHH----HHHHHHhCCCCCCcCCCCCCeeecCHHHHHHHH
Confidence 4789999997543 4456665 6665555553678888999998765
No 400
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=35.52 E-value=40 Score=23.20 Aligned_cols=57 Identities=12% Similarity=0.272 Sum_probs=31.2
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELV 80 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~ 80 (96)
+++||..+|++..-+-...+ + .|. | ..+||.++ .++.....+. .+..||+|++
T Consensus 188 l~~lA~~~~~S~~~l~r~fk--~-~G~--------------t------~~~~l~~~---Rl~~A~~lL~-~~~~si~eIA 240 (276)
T 3gbg_A 188 WADICGELRTNRMILKKELE--S-RGV--------------K------FRELINSI---RISYSISLMK-TGEFKIKQIA 240 (276)
T ss_dssp HHHHHHHHTCCHHHHHHHHH--T-TTC--------------C------HHHHHHHH---HHHHHHHHHH-HTCCCHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH--H-cCC--------------C------HHHHHHHH---HHHHHHHHHh-CCCCCHHHHH
Confidence 36788888887666555543 2 442 2 23344433 2333333332 2567888888
Q ss_pred Hhcc
Q psy11008 81 ENSN 84 (96)
Q Consensus 81 ~~sN 84 (96)
..|.
T Consensus 241 ~~~G 244 (276)
T 3gbg_A 241 YQSG 244 (276)
T ss_dssp HHTT
T ss_pred HHhC
Confidence 7763
No 401
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=35.43 E-value=1.1e+02 Score=21.52 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=40.0
Q ss_pred hhhhhhhC-CChHHHHHHHHHHHHcCCccEEeeC-----CC---ceEEEcHHHHHHHHHH
Q psy11008 2 EDLAALFR-MKTQSVIDRIVELQKTGALTGVIDD-----RG---KFIYISQEELNSVATF 52 (96)
Q Consensus 2 edLAa~F~-lktq~vI~RI~eL~~~g~ltGViDD-----RG---KfIyIs~eEl~~Va~f 52 (96)
++|+..++ ++..-|-..++.|.+.|-+.=+--+ || ||..+|++-...+..|
T Consensus 49 ~eL~~~l~~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~y 108 (151)
T 3u1d_A 49 EELLYRNPDETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRAV 108 (151)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHHT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHHh
Confidence 57888888 8777777889999999999855322 34 3999999988887664
No 402
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein STR and functional analyses, riken structural genomics/proteomi initiative; 2.20A {Homo sapiens} PDB: 2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A 2het_A
Probab=35.42 E-value=65 Score=20.62 Aligned_cols=72 Identities=14% Similarity=0.140 Sum_probs=32.3
Q ss_pred hhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHh--hchhchhhhhhhh--ccccceeHHH
Q psy11008 3 DLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQ--RGREELNSVATFI--KQKGRVSVSE 78 (96)
Q Consensus 3 dLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~--rgr~~~~~~~~~~--~~~GRVsi~e 78 (96)
.+...++++.+++-.-.+.+-... ..| +|+.+|+..+..-+.. ...+++..+-..+ ...|.|+..|
T Consensus 23 ~~~~~~~~~~~~i~~~f~~~d~~~-------~~G---~i~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~~G~i~~~E 92 (207)
T 2d8n_A 23 ELQLNTKFSEEELCSWYQSFLKDC-------PTG---RITQQQFQSIYAKFFPDTDPKAYAQHVFRSFDSNLDGTLDFKE 92 (207)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHC-------TTS---EEEHHHHHHHHHHTCTTSCCHHHHHHHHHHHCTTCCSEEEHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHhhC-------CCC---CCCHHHHHHHHHHhccCCCcHHHHHHHHHHhcCCCCCeEeHHH
Confidence 455566775555554444444331 123 4566666554432211 1111222222222 2346666666
Q ss_pred HHHhcc
Q psy11008 79 LVENSN 84 (96)
Q Consensus 79 L~~~sN 84 (96)
+.....
T Consensus 93 f~~~~~ 98 (207)
T 2d8n_A 93 YVIALH 98 (207)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665543
No 403
>3bwl_A Sensor protein; structural genomics, APC87707.1, PAS domain, HTR-like protei protein structure initiative; HET: MSE I3A; 1.73A {Haloarcula marismortui atcc 43049}
Probab=35.37 E-value=41 Score=18.84 Aligned_cols=19 Identities=21% Similarity=0.382 Sum_probs=14.3
Q ss_pred CCccEEeeCCCceEEEcHH
Q psy11008 26 GALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 26 g~ltGViDDRGKfIyIs~e 44 (96)
....-++|..|+++|+++.
T Consensus 27 ~~~i~~~d~~g~i~~~N~a 45 (126)
T 3bwl_A 27 PDMIDVLDADGTICEVNQR 45 (126)
T ss_dssp SSEEEEECTTCBEEEECHH
T ss_pred CcEEEEEcCCCCEEEEcHH
Confidence 3344567899999999875
No 404
>1psr_A Psoriasin, S100A7; EF-hand protein, MAD phasing, psoriasis, S100 protein family; 1.05A {Homo sapiens} SCOP: a.39.1.2 PDB: 2psr_A 2wor_A* 2wos_A* 3psr_A 2wnd_A
Probab=35.35 E-value=53 Score=19.93 Aligned_cols=51 Identities=14% Similarity=0.143 Sum_probs=30.5
Q ss_pred cEEeeC-CCceEEEcHHHHHHHHHH-----HHh---hchhchhhhhhhh--ccccceeHHHHHHh
Q psy11008 29 TGVIDD-RGKFIYISQEELNSVATF-----IKQ---RGREELNSVATFI--KQKGRVSVSELVEN 82 (96)
Q Consensus 29 tGViDD-RGKfIyIs~eEl~~Va~f-----I~~---rgr~~~~~~~~~~--~~~GRVsi~eL~~~ 82 (96)
.-++|+ .| +||.+|+..+-.- +.. --.+++..+-.-+ ...|.|+..|++..
T Consensus 16 F~~fD~~~g---~Is~~El~~~l~~~~~~~lg~~~~~~~~ev~~l~~~~D~d~dG~I~f~EF~~~ 77 (100)
T 1psr_A 16 FHKYTRRDD---KIDKPSLLTMMKENFPNFLSACDKKGTNYLADVFEKKDKNEDKKIDFSEFLSL 77 (100)
T ss_dssp HHHTCCTTS---CBCHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHCTTCSSCBCHHHHHHH
T ss_pred HHHHhCCCC---eECHHHHHHHHHHHhHhhhccccccCHHHHHHHHHHhCCCCCCcCcHHHHHHH
Confidence 445653 45 9999999988653 221 1223444443332 34799999998543
No 405
>3b33_A Sensor protein; structural genomics, PAS domain, nitrogen regulation protein APC91440.4, PSI-2; HET: MSE; 1.83A {Vibrio parahaemolyticus rimd 2210633}
Probab=34.96 E-value=23 Score=19.66 Aligned_cols=22 Identities=18% Similarity=0.167 Sum_probs=15.3
Q ss_pred HHcCCccEEeeCCCceEEEcHH
Q psy11008 23 QKTGALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 23 ~~~g~ltGViDDRGKfIyIs~e 44 (96)
+....-.=++|..|+++|+.+.
T Consensus 14 ~~~~~~i~~~D~~g~I~~~N~a 35 (115)
T 3b33_A 14 NNMVTATLILDDGLAIRYANPA 35 (115)
T ss_dssp HHCSSEEEEECTTCBEEEECHH
T ss_pred hhcCceEEEECCCCcEEEECHH
Confidence 3333333468999999999874
No 406
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=34.86 E-value=19 Score=22.86 Aligned_cols=17 Identities=12% Similarity=0.401 Sum_probs=15.3
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+.+|+.||+..
T Consensus 119 ~Ls~~ei~~l~aYl~sl 135 (137)
T 2c1d_B 119 ILNAQQIEDVVAFLVTL 135 (137)
T ss_dssp SSCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHc
Confidence 58999999999999865
No 407
>2bec_A Calcineurin B homologous protein 2; calcineurin-homologous protein, calcium-binding protein, NHE1 regulating protein; 2.70A {Homo sapiens}
Probab=34.83 E-value=38 Score=21.75 Aligned_cols=47 Identities=23% Similarity=0.320 Sum_probs=29.5
Q ss_pred EEcHHHHHHHHHHH-Hh-hchhchhhhhhh----h--ccccceeHHHHHHhcccc
Q psy11008 40 YISQEELNSVATFI-KQ-RGREELNSVATF----I--KQKGRVSVSELVENSNQL 86 (96)
Q Consensus 40 yIs~eEl~~Va~fI-~~-rgr~~~~~~~~~----~--~~~GRVsi~eL~~~sN~l 86 (96)
|||.+|+..+..-+ .. -..++++.+..- + ...|+||..|+.....+.
T Consensus 130 ~Is~~El~~~l~~~~g~~~~~~~~~~~~~~~~~~~D~d~dG~Is~~EF~~~~~~~ 184 (202)
T 2bec_A 130 KISRHEMLQVLRLMVGVQVTEEQLENIADRTVQEADEDGDGAVSFVEFTKSLEKM 184 (202)
T ss_dssp EECHHHHHHHHHHSCCSCCCHHHHHHHHHHHHHHHCSSCSSSEEHHHHHHTTTTS
T ss_pred eEcHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHh
Confidence 68999988776543 11 113344444333 2 357999999999877653
No 408
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=34.82 E-value=18 Score=24.91 Aligned_cols=48 Identities=8% Similarity=0.194 Sum_probs=36.6
Q ss_pred hCCChHHHHHHHHHHHHcCCccEEeeC------CCceEEEcHHHHHHHHHHHHh
Q psy11008 8 FRMKTQSVIDRIVELQKTGALTGVIDD------RGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 8 F~lktq~vI~RI~eL~~~g~ltGViDD------RGKfIyIs~eEl~~Va~fI~~ 55 (96)
++++...+---++.|+++|-|+...+. +=||..||++-...+..+++.
T Consensus 74 ~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~ 127 (148)
T 2zfw_A 74 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQL 127 (148)
T ss_dssp EECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHHH
T ss_pred CCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 468888888899999999999997643 237899998766666555543
No 409
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=34.49 E-value=29 Score=20.61 Aligned_cols=12 Identities=25% Similarity=0.548 Sum_probs=6.0
Q ss_pred cccceeHHHHHH
Q psy11008 70 QKGRVSVSELVE 81 (96)
Q Consensus 70 ~~GRVsi~eL~~ 81 (96)
..|+||..|++.
T Consensus 124 ~dg~i~~~eF~~ 135 (140)
T 1ggw_A 124 KDGMVNYHDFVQ 135 (140)
T ss_dssp SSCCSTTTHHHH
T ss_pred CCCcEeHHHHHH
Confidence 345555555543
No 410
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=34.48 E-value=87 Score=24.76 Aligned_cols=80 Identities=9% Similarity=0.066 Sum_probs=43.0
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEE--cHHH-HHHHHHHHHhhchhchhhhhhhhccccceeHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYI--SQEE-LNSVATFIKQRGREELNSVATFIKQKGRVSVS 77 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyI--s~eE-l~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~ 77 (96)
..+||..+++++..+..-|++|...=.-.-.|.-+|+=+++ ++.. ++..-...-... ....+..++-..+.+++.
T Consensus 35 ~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~~~~Gy~L~~~~~~~~~~~~~~~~~~e--R~~~Il~~LL~~~~isi~ 112 (485)
T 3sqn_A 35 AKRLAAQIQTTERTVFSDLQYIRSQLPADWSIETDSSGIRLRNQGNAQTNELWSLFLPQS--ISIQLLKELLFTKELVTT 112 (485)
T ss_dssp CGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEEETTEEEEEEC---CTHHHHHHHGGGS--HHHHHHHHHHHCSEEEHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEEcCCEEEEecCcHHHHHHHHHhcCHHH--HHHHHHHHHHhCCCCCHH
Confidence 36899999999999998888887642100123334444444 3322 111111121221 223334333335689999
Q ss_pred HHHHh
Q psy11008 78 ELVEN 82 (96)
Q Consensus 78 eL~~~ 82 (96)
+|++.
T Consensus 113 ~Lae~ 117 (485)
T 3sqn_A 113 SFLST 117 (485)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99875
No 411
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=34.46 E-value=15 Score=23.28 Aligned_cols=17 Identities=6% Similarity=0.341 Sum_probs=15.1
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
.+|++|+..|+.||+..
T Consensus 120 ~Ls~~ei~~l~aYl~sl 136 (138)
T 1h32_B 120 LMTAGQIEDVVAYLMTL 136 (138)
T ss_dssp SSCHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 47999999999999864
No 412
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=34.23 E-value=21 Score=23.08 Aligned_cols=16 Identities=6% Similarity=0.353 Sum_probs=15.2
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+..|+.||+..
T Consensus 108 ls~~ei~~l~~Yl~~l 123 (147)
T 2gc4_D 108 LTLDEMLRTMAWVRHL 123 (147)
T ss_dssp SCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHh
Confidence 7999999999999987
No 413
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=34.02 E-value=50 Score=20.63 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=30.6
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHhcccce
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVENSNQLV 87 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~sN~lI 87 (96)
+||.+|+..+..-+... ..+++..+-..+ ...|+|+..|+++..-.+.
T Consensus 129 ~I~~~El~~~l~~~g~~~~~~~~~~~~~~~D~d~dg~i~~~eF~~~~~~~~ 179 (195)
T 1qv0_A 129 TITLDEWKAYGKISGISPSQEDCEATFRHCDLDNAGDLDVDEMTRQHLGFW 179 (195)
T ss_dssp EECHHHHHHHHHHHSSCCCHHHHHHHHHHSCCCTTSCEEHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHHc
Confidence 69999998877544211 133444443333 4579999999988765543
No 414
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=33.96 E-value=14 Score=24.71 Aligned_cols=55 Identities=11% Similarity=0.235 Sum_probs=33.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHc--------------------CCc-cEEee-CCCceEE----EcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKT--------------------GAL-TGVID-DRGKFIY----ISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~--------------------g~l-tGViD-DRGKfIy----Is~eEl~~Va~fI~~ 55 (96)
.++|..++.+..++.+||+.|+++ ..+ .-+.+ ..-+|++ .+.++|..++..++.
T Consensus 17 ~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~~~~~l~~~~~~i~g~~~~~~~~~~d~~~lr~~~~~l~~ 96 (171)
T 2zvf_A 17 REASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSVIADLWADILMERAEEFDSMKVVAEVVDADMQALQKLAERLAE 96 (171)
T ss_dssp HHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEESSSCEEEEEECSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcEEeCCEEEEEEEeCCCHHHHHHHHHHHhc
Confidence 467888888777777776655432 111 12222 2234543 467888899988887
Q ss_pred h
Q psy11008 56 R 56 (96)
Q Consensus 56 r 56 (96)
+
T Consensus 97 ~ 97 (171)
T 2zvf_A 97 K 97 (171)
T ss_dssp T
T ss_pred C
Confidence 6
No 415
>2gj3_A Nitrogen fixation regulatory protein; PAS domain, FAD, redox sensor, atomic resolution, transferase; HET: FAD; 1.04A {Azotobacter vinelandii}
Probab=33.96 E-value=41 Score=19.12 Aligned_cols=21 Identities=10% Similarity=0.284 Sum_probs=15.0
Q ss_pred HcCCccEEeeCCCceEEEcHH
Q psy11008 24 KTGALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 24 ~~g~ltGViDDRGKfIyIs~e 44 (96)
......-++|..|+++|+++.
T Consensus 13 ~~~~~i~~~d~~g~i~~~N~a 33 (120)
T 2gj3_A 13 HAPIAISITDLKANILYANRA 33 (120)
T ss_dssp HCSSEEEEECTTCBEEEECHH
T ss_pred hCCCeEEEECCCCCEEeehHH
Confidence 334344467999999999874
No 416
>2kz6_A Uncharacterized protein; protein of unknown function, structural genomics, PSI-2, Pro structure initiative; NMR {Chromobacterium violaceum}
Probab=33.90 E-value=18 Score=23.77 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=13.6
Q ss_pred EEeeCCCceEEEcHHH
Q psy11008 30 GVIDDRGKFIYISQEE 45 (96)
Q Consensus 30 GViDDRGKfIyIs~eE 45 (96)
=|.|-||+-+|.|+..
T Consensus 7 ~v~DhRG~~vy~t~t~ 22 (102)
T 2kz6_A 7 SVETPRGEILNVSEQE 22 (102)
T ss_dssp EEEETTEEEEEECHHH
T ss_pred EeccCCCCEEecCCCC
Confidence 4889999999999843
No 417
>1u5t_B Defective in vacuolar protein sorting; VPS36P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=33.41 E-value=24 Score=25.00 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=27.3
Q ss_pred h-hhhhhCCChHHHHHHHHHHHHcCCccEEeeC
Q psy11008 3 D-LAALFRMKTQSVIDRIVELQKTGALTGVIDD 34 (96)
Q Consensus 3 d-LAa~F~lktq~vI~RI~eL~~~g~ltGViDD 34 (96)
+ +|..||.+..-+.+.|..++++|.+ .+||
T Consensus 124 ~~la~~~~ws~~~a~e~L~~~e~~G~l--~~D~ 154 (169)
T 1u5t_B 124 SSNNSKSNWTLGILMEVLQNCVDEGDL--LIDK 154 (169)
T ss_dssp HTSCTTCCCCHHHHHHHHHHHHHHTSE--EEEE
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCE--EEEC
Confidence 5 8999999999999999999999987 6775
No 418
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=33.35 E-value=37 Score=21.96 Aligned_cols=42 Identities=24% Similarity=0.473 Sum_probs=19.3
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh----ccccceeHHHHHH
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI----KQKGRVSVSELVE 81 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~----~~~GRVsi~eL~~ 81 (96)
|||.+||..+.+-+-.+ ..+++..+-..+ -..|+|+..|+++
T Consensus 101 ~I~~~el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~ 147 (159)
T 3i5g_C 101 LISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMK 147 (159)
T ss_dssp EECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHH
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHH
Confidence 56666666654332111 122333333222 1346677666654
No 419
>1cb1_A Calbindin D9K; calcium-binding protein; NMR {Sus scrofa} SCOP: a.39.1.1
Probab=33.31 E-value=28 Score=18.81 Aligned_cols=46 Identities=22% Similarity=0.283 Sum_probs=28.6
Q ss_pred EEcHHHHHHHHHH-HHhh--chhchhhhhhhh--ccccceeHHHHHHhccc
Q psy11008 40 YISQEELNSVATF-IKQR--GREELNSVATFI--KQKGRVSVSELVENSNQ 85 (96)
Q Consensus 40 yIs~eEl~~Va~f-I~~r--gr~~~~~~~~~~--~~~GRVsi~eL~~~sN~ 85 (96)
+|+.+|+..+..- +... ..+++..+..-+ ...|+|+..|++....+
T Consensus 25 ~i~~~el~~~l~~~~g~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 75 (78)
T 1cb1_A 25 QLSKEELKQLIQAEFPSLLKGPRTLDDLFQELDKNGDGEVSFEEFQVLVKK 75 (78)
T ss_dssp EECHHHHHHHHHHHCSSCCSSCCCSSHHHHHTCCCSSSSEEHHHHHHHHHH
T ss_pred EeCHHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHH
Confidence 6899998877652 2211 234455544443 35789999999876543
No 420
>3lyx_A Sensory BOX/ggdef domain protein; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Colwellia psychrerythraea}
Probab=33.24 E-value=32 Score=18.03 Aligned_cols=19 Identities=21% Similarity=-0.003 Sum_probs=14.5
Q ss_pred CCccEEeeCCCceEEEcHH
Q psy11008 26 GALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 26 g~ltGViDDRGKfIyIs~e 44 (96)
....-++|..|+++|+++.
T Consensus 17 ~~~i~~~d~~~~i~~~N~~ 35 (124)
T 3lyx_A 17 FDAIVVTDLQGFIIDWNKG 35 (124)
T ss_dssp SSEEEEEETTCBEEEECHH
T ss_pred CceEEEECCCCcEeehhhH
Confidence 3344568999999999875
No 421
>1yj7_A ESCJ; mixed alpha/beta, extended linker, protein transport; 1.80A {Escherichia coli}
Probab=32.73 E-value=1.3e+02 Score=21.19 Aligned_cols=49 Identities=10% Similarity=0.225 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHHHHcCC-ccEEeeCCCc-eEEEcHHHHHHHHHHHHhhc
Q psy11008 9 RMKTQSVIDRIVELQKTGA-LTGVIDDRGK-FIYISQEELNSVATFIKQRG 57 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~-ltGViDDRGK-fIyIs~eEl~~Va~fI~~rg 57 (96)
+|..+|+-.=+..|++.|- +.=-+++.|. =|++.++.+...---+...|
T Consensus 8 ~L~~~da~~i~~~L~~~gI~~~y~~~~~g~~~I~Vp~~~~~~ar~~La~~G 58 (171)
T 1yj7_A 8 GLTEKEANQMQALLLSNDVNVSKEMDKSGNMTLSVAAADFVRAITILNNNG 58 (171)
T ss_dssp EECHHHHHHHHHHHHHTTCCCEEEECTTSCEEEEEEGGGHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHcCCCCceEECCCCCEEEEeCHHHHHHHHHHHHHcC
Confidence 4788898888899999885 4667888888 59999999998888888876
No 422
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=32.69 E-value=55 Score=20.18 Aligned_cols=42 Identities=24% Similarity=0.326 Sum_probs=19.7
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHH
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVE 81 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~ 81 (96)
|||.+|+..+..-+-.. ..+++..+-..+ ...|+||..|+++
T Consensus 99 ~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~ 143 (148)
T 2lmt_A 99 FISPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMINYEEFVW 143 (148)
T ss_dssp EECHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSCCSSEEHHHHHH
T ss_pred cCcHHHHHHHHHHcCccccHHHHHHHHHHhCCCCCCeEeHHHHHH
Confidence 56777776654432111 112222222222 2357777777664
No 423
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=32.53 E-value=71 Score=19.67 Aligned_cols=37 Identities=11% Similarity=0.239 Sum_probs=24.7
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHHh
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQ 55 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~ 55 (96)
++||...|++ +..|.+|. +|+. +|.+.+.++|+++.-
T Consensus 41 ~eLA~~~GiS-~~tis~iE--------------~G~~--~s~~~l~kIa~~L~v 77 (88)
T 3t76_A 41 GELREAVGVS-KSTFAKLG--------------KNEN--VSLTVLLAICEYLNC 77 (88)
T ss_dssp HHHHHHHTCC-HHHHHHHH--------------TTCC--CCHHHHHHHHHHHTC
T ss_pred HHHHHHHCcC-HHHHHHHH--------------cCCC--cCHHHHHHHHHHHCc
Confidence 4677777773 34555554 2554 588999999988753
No 424
>2ccm_A Calexcitin; EF hand, calcium, signaling protein; 1.8A {Loligo pealeii}
Probab=32.38 E-value=55 Score=20.55 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=29.3
Q ss_pred EEcHHHHHHHHHHHHh-hc----hhchhhhh-----------hhh--ccccceeHHHHHHhcccc
Q psy11008 40 YISQEELNSVATFIKQ-RG----REELNSVA-----------TFI--KQKGRVSVSELVENSNQL 86 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~-rg----r~~~~~~~-----------~~~--~~~GRVsi~eL~~~sN~l 86 (96)
+||.+|+..+..-+.. .| .+++..+. ..+ ...|+|+..|+.....++
T Consensus 29 ~i~~~E~~~~l~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~~~~ 93 (191)
T 2ccm_A 29 VIEWDDFELAIKKICNLHSWPTDGKKHNEARATLKLIWDGLRKYADENEDEQVTKEEWLKMWAEC 93 (191)
T ss_dssp EECHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHHH
T ss_pred eeeHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHhcCCCCCCeECHHHHHHHHHHH
Confidence 6899999887766531 12 22333332 222 357999999998765543
No 425
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=32.36 E-value=30 Score=23.82 Aligned_cols=24 Identities=38% Similarity=0.576 Sum_probs=20.8
Q ss_pred eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 33 DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 33 DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
|+.-+.++||++--..|..|++++
T Consensus 80 d~~kr~~~Vs~egh~~vk~f~Kr~ 103 (108)
T 3dom_A 80 DDKKKKFFISKEGNSQVLDFAKRK 103 (108)
T ss_dssp EGGGTEEEEEGGGHHHHHHHHHHH
T ss_pred cCCccEEEEeccchHHHHHHHHHH
Confidence 778888889998888899999877
No 426
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=32.13 E-value=39 Score=20.30 Aligned_cols=15 Identities=20% Similarity=0.492 Sum_probs=8.5
Q ss_pred cccceeHHHHHHhcc
Q psy11008 70 QKGRVSVSELVENSN 84 (96)
Q Consensus 70 ~~GRVsi~eL~~~sN 84 (96)
..|.|+..||.....
T Consensus 109 ~~G~i~~~el~~~l~ 123 (161)
T 3fwb_A 109 HTGKISIKNLRRVAK 123 (161)
T ss_dssp CSSEECHHHHHHHHH
T ss_pred CCCeEeHHHHHHHHH
Confidence 346666666655443
No 427
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=32.11 E-value=1.2e+02 Score=20.75 Aligned_cols=49 Identities=14% Similarity=0.093 Sum_probs=37.2
Q ss_pred hhCCChHHHHHHHHHHHHcCCccEEee----CCC---ceEEEcHHHHH--HHHHHHHh
Q psy11008 7 LFRMKTQSVIDRIVELQKTGALTGVID----DRG---KFIYISQEELN--SVATFIKQ 55 (96)
Q Consensus 7 ~F~lktq~vI~RI~eL~~~g~ltGViD----DRG---KfIyIs~eEl~--~Va~fI~~ 55 (96)
-|.++.-.+---+..|+++|-|+...- .++ ||-.+|+.+-. ...+|..+
T Consensus 49 ~~~is~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~~~~~~~~~~~ 106 (122)
T 1bm9_A 49 GFKPNHTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAAKLYKKQLKVE 106 (122)
T ss_dssp TCCCCHHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHHHHHHHHHHHH
T ss_pred cccCCcccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhhHHHHHHHHHH
Confidence 455666677788999999999999887 555 99999998777 55555443
No 428
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=32.00 E-value=38 Score=25.73 Aligned_cols=16 Identities=25% Similarity=0.592 Sum_probs=15.3
Q ss_pred EcHHHHHHHHHHHHhh
Q psy11008 41 ISQEELNSVATFIKQR 56 (96)
Q Consensus 41 Is~eEl~~Va~fI~~r 56 (96)
+|++|+.+|+.||++.
T Consensus 409 Lsd~ei~~l~~Yl~~~ 424 (442)
T 2zoo_A 409 LNDEDIANVITFVLNN 424 (442)
T ss_dssp CCHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999999987
No 429
>3q9v_A DNA-binding response regulator; response regulator protein, DNA binding protein; 1.60A {Deinococcus radiodurans}
Probab=31.95 E-value=25 Score=23.25 Aligned_cols=33 Identities=33% Similarity=0.544 Sum_probs=27.4
Q ss_pred CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccce-eHHHHHHh
Q psy11008 35 RGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRV-SVSELVEN 82 (96)
Q Consensus 35 RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRV-si~eL~~~ 82 (96)
.|+-|.+|+.|+.-++-+++.. |+| |..+|.+.
T Consensus 55 ~g~~i~Lt~~E~~LL~~L~~~~---------------g~vvsre~L~~~ 88 (133)
T 3q9v_A 55 KGEELRLSPKEFDILALLIRQP---------------GRVYSRQEIGQE 88 (133)
T ss_dssp TTEECCCCHHHHHHHHHHTTST---------------TCEEEHHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHCC---------------CceEcHHHHHHH
Confidence 5777889999999999999888 665 88888765
No 430
>1k94_A Grancalcin; penta-EF-hand protein, calcium binding protein, metal binding protein; 1.70A {Homo sapiens} SCOP: a.39.1.8 PDB: 1k95_A 1f4q_A 1f4o_A
Probab=31.86 E-value=33 Score=21.24 Aligned_cols=15 Identities=20% Similarity=0.423 Sum_probs=8.7
Q ss_pred ccccceeHHHHHHhc
Q psy11008 69 KQKGRVSVSELVENS 83 (96)
Q Consensus 69 ~~~GRVsi~eL~~~s 83 (96)
...|+|+..|+....
T Consensus 116 d~dg~i~~~eF~~~~ 130 (165)
T 1k94_A 116 SKNGRIFFDDYVACC 130 (165)
T ss_dssp CBTTBCBHHHHHHHH
T ss_pred CCCCeEcHHHHHHHH
Confidence 455666666665443
No 431
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=31.83 E-value=9.8 Score=31.69 Aligned_cols=44 Identities=25% Similarity=0.271 Sum_probs=0.0
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEE 45 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eE 45 (96)
++||...|++.++|+.-+..|++.|.+.=+-...=+..-+|+|-
T Consensus 24 ~~~a~~~~~~~~~v~~~~~~L~~~~~~v~~~~~~~~~~~Lt~eg 67 (508)
T 3l4g_A 24 AELAAELGMEHQAVVGAVKSLQALGEVIEAELRSTKHWELTAEG 67 (508)
T ss_dssp --------------------------------------------
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCeEEEEEEEEEEEEECHHH
Confidence 57899999999999999999999983333433333444444443
No 432
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=31.81 E-value=27 Score=22.54 Aligned_cols=18 Identities=11% Similarity=0.412 Sum_probs=15.7
Q ss_pred EEEcHHHHHHHHHHHHhh
Q psy11008 39 IYISQEELNSVATFIKQR 56 (96)
Q Consensus 39 IyIs~eEl~~Va~fI~~r 56 (96)
--||+||...|++|+.++
T Consensus 74 ~~Is~eda~~Iv~YLa~~ 91 (92)
T 3a9f_A 74 SGISDDDAKTIGIWLHEK 91 (92)
T ss_dssp CCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 458999999999999864
No 433
>2f33_A Calbindin; EF-hand, Ca2+-binding, metal binding protein; NMR {Rattus norvegicus} PDB: 2g9b_A
Probab=31.71 E-value=40 Score=22.10 Aligned_cols=45 Identities=13% Similarity=0.247 Sum_probs=29.3
Q ss_pred EEcHHHHHHHHHHHHh-----hchhchhhhhhh---hccccceeHHHHHHhcc
Q psy11008 40 YISQEELNSVATFIKQ-----RGREELNSVATF---IKQKGRVSVSELVENSN 84 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~-----rgr~~~~~~~~~---~~~~GRVsi~eL~~~sN 84 (96)
+||.+|+..+..-+.. -..+++..+... ....|+||..|++....
T Consensus 207 ~is~~El~~~l~~~~~~~~~~~~~~e~~~~~~~~~D~d~dG~i~~~EF~~~~~ 259 (263)
T 2f33_A 207 YIDENELDALLKDLCEKNKQELDINNISTYKKNIMALSDGGKLYRTDLALILS 259 (263)
T ss_dssp CEEHHHHHHHHHHHHHHCTTTCCTTTHHHHHHHHHTTSBTTEECGGGTHHHHC
T ss_pred cccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccCCCCeEcHHHHHHHHh
Confidence 5899999887765543 223445544432 35579999999887543
No 434
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=31.70 E-value=1.1e+02 Score=20.03 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=27.6
Q ss_pred CCChHHHHHHHHHHHHcCCccEEeeCCCceEEE
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVIDDRGKFIYI 41 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyI 41 (96)
+++..-|-.-++.|.+.|.+.=+-.+.|..-|-
T Consensus 45 ~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~ 77 (139)
T 3mwm_A 45 AVGLTTVYRTLQSLADAGEVDVLRTAEGESVYR 77 (139)
T ss_dssp CCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEE
Confidence 677888888899999999999888777776664
No 435
>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}
Probab=31.66 E-value=29 Score=20.89 Aligned_cols=10 Identities=20% Similarity=0.607 Sum_probs=5.6
Q ss_pred EEeeCCCceE
Q psy11008 30 GVIDDRGKFI 39 (96)
Q Consensus 30 GViDDRGKfI 39 (96)
-|+|+.|+|+
T Consensus 103 pVvd~~g~~~ 112 (128)
T 3gby_A 103 PLADEDGRYE 112 (128)
T ss_dssp EEECTTCBEE
T ss_pred EEECCCCCEE
Confidence 4555566655
No 436
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=31.40 E-value=50 Score=18.24 Aligned_cols=22 Identities=14% Similarity=0.262 Sum_probs=18.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQ 23 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~ 23 (96)
.++|..+|++...|-.++..+.
T Consensus 30 ~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 30 KEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 5899999999888888887754
No 437
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=31.39 E-value=22 Score=21.38 Aligned_cols=18 Identities=0% Similarity=0.183 Sum_probs=14.3
Q ss_pred eEEE-cHHHHHHHHHHHHh
Q psy11008 38 FIYI-SQEELNSVATFIKQ 55 (96)
Q Consensus 38 fIyI-s~eEl~~Va~fI~~ 55 (96)
|--+ |++|+.+|+.||+.
T Consensus 86 ~~~~~~~~ei~~l~aYl~s 104 (106)
T 1hro_A 86 YPGQPDPQKRADIIAYLET 104 (106)
T ss_dssp CCCCCCHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHh
Confidence 3335 69999999999975
No 438
>1iru_G 20S proteasome; cell cycle, immune response, proteolysis, ubiquitin, hydrolase; 2.75A {Bos taurus} SCOP: d.153.1.4 PDB: 3unb_F* 3une_F 3unf_F* 3unh_F
Probab=31.31 E-value=81 Score=22.55 Aligned_cols=48 Identities=8% Similarity=0.209 Sum_probs=32.9
Q ss_pred CCChHHHHHH----HHHHHHcCCcc------EEeeCC--CceEEEcHHHHHHHHHHHHhh
Q psy11008 9 RMKTQSVIDR----IVELQKTGALT------GVIDDR--GKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 9 ~lktq~vI~R----I~eL~~~g~lt------GViDDR--GKfIyIs~eEl~~Va~fI~~r 56 (96)
+|+.+++++- |.........+ +||+.. |+|-.++++|++.+.+.+++.
T Consensus 183 ~ms~eea~~la~~al~~~~~~~~~~~~~iev~vi~~~~~g~~~~l~~~~i~~~~~~~~~~ 242 (254)
T 1iru_G 183 EMTCRDIVKEVAKIIYIVHDEVKDKAFELELSWVGELTNGRHEIVPKDIREEAEKYAKES 242 (254)
T ss_dssp GCCHHHHHHHHHHHHHHHSCSSSSCCEEEEEEECBTTTTTCCEECCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhccCCCCcEEEEEEEcCCCCCeEECCHHHHHHHHHHHHHh
Confidence 5777888873 33332333223 467744 789999999999998888665
No 439
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=31.23 E-value=29 Score=20.92 Aligned_cols=17 Identities=6% Similarity=0.391 Sum_probs=14.7
Q ss_pred EEcHHHHHHHHHHHHhh
Q psy11008 40 YISQEELNSVATFIKQR 56 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r 56 (96)
-||++|...|+.|+.+.
T Consensus 64 ~ls~~e~~~I~~YL~~~ 80 (81)
T 2blf_B 64 PVDEADAKAIADYLAKT 80 (81)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 38999999999999764
No 440
>2cy5_A Epidermal growth factor receptor pathway substrate 8-like protein 1; structural genomics, signal transduction, phosphorylation, PTB domain, NPPSFA; 1.90A {Mus musculus} SCOP: b.55.1.2 PDB: 2cy4_A
Probab=31.05 E-value=34 Score=24.15 Aligned_cols=34 Identities=3% Similarity=0.120 Sum_probs=23.8
Q ss_pred ChHHHHHHHHHHHHcCCccE---EeeCCCceEEEcHH
Q psy11008 11 KTQSVIDRIVELQKTGALTG---VIDDRGKFIYISQE 44 (96)
Q Consensus 11 ktq~vI~RI~eL~~~g~ltG---ViDDRGKfIyIs~e 44 (96)
..+|+++|++.|++.|.|=+ ++-=+.+.|-+-+.
T Consensus 29 ~~~D~irkL~~ld~kg~iW~Q~m~L~v~~~~v~LlD~ 65 (140)
T 2cy5_A 29 TVEDASRKLAVMDSQGRVWAQEMLLRVSPSQVTLLDP 65 (140)
T ss_dssp SHHHHHHHHHHHHHTTCCCCEEEEEEECSSEEEEECT
T ss_pred CHHHHHHHHHhHHHcCCcccceeEEEECCCeEEEEcc
Confidence 46899999999999999976 33333355555433
No 441
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=30.90 E-value=15 Score=25.56 Aligned_cols=49 Identities=14% Similarity=0.350 Sum_probs=39.8
Q ss_pred CCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHh
Q psy11008 34 DRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVEN 82 (96)
Q Consensus 34 DRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~ 82 (96)
-+++||.+|+.-+..||..|+-.--++--..-.|...|+---+..|..+
T Consensus 26 A~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~f~pkKaA~~v~klL~s 74 (134)
T 2zjr_P 26 AVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNS 74 (134)
T ss_dssp EEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTT
T ss_pred EEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHCcHhHHHHHHHHHHH
Confidence 4689999999999999999998866666667778888887777666543
No 442
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=30.87 E-value=60 Score=18.20 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=29.0
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHhcccce
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVENSNQLV 87 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~sN~lI 87 (96)
+||.+|+..+..-+... -.+++..+...+ ...|+|+..|++....++.
T Consensus 25 ~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~~~~ 75 (92)
T 2kn2_A 25 YISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTVR 75 (92)
T ss_dssp EECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHHHHT
T ss_pred eEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhcc
Confidence 68888888765543211 123444443333 3568999999987765543
No 443
>3no7_A PARB, putative plasmid related protein; ribbon-helix-helix, DNA binding protein; 1.40A {Leifsonia xyli subsp}
Probab=30.85 E-value=48 Score=21.94 Aligned_cols=35 Identities=14% Similarity=0.182 Sum_probs=23.0
Q ss_pred eEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHhc
Q psy11008 38 FIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVENS 83 (96)
Q Consensus 38 fIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~s 83 (96)
=+|+++|.+..|=.-+..-+. +.|--|+|++++.+
T Consensus 13 T~y~~~e~~~rvRaA~lat~~-----------~eg~~slS~Fi~aA 47 (80)
T 3no7_A 13 TVTVGEERRARLRTAYTLTHL-----------QEGHRTFSGFIAAA 47 (80)
T ss_dssp EEECCHHHHHHHHHHHHHHHH-----------HHTCCSHHHHHHHH
T ss_pred ceeECHHHHHHHHHHHHHHhh-----------cccCCcHHHHHHHH
Confidence 389999999988443333321 22777888877653
No 444
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.62 E-value=65 Score=23.54 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=32.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEE 45 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eE 45 (96)
++||..+|++...|...+.+|.+.|-+.- .++--|-|.+|-
T Consensus 182 ~~la~~~~l~~~~V~~~l~~L~~~~~v~~---~~~~~~~~~~~~ 222 (232)
T 2qlz_A 182 EELSDRLNLKEREVREKISEMARFVPVKI---INDNTVVLDEDQ 222 (232)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHTTTSCEEE---ETTTEEEECHHH
T ss_pred HHHHHHhCcCHHHHHHHHHHHHhcCCeEE---ecCCeEEecHHH
Confidence 68999999999999999999999998862 223335666665
No 445
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=30.60 E-value=40 Score=23.83 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=15.4
Q ss_pred hhhhhccccceeHHHHHHhcc
Q psy11008 64 VATFIKQKGRVSVSELVENSN 84 (96)
Q Consensus 64 ~~~~~~~~GRVsi~eL~~~sN 84 (96)
+...+.++|+|+++||++..|
T Consensus 17 i~~~l~~~~~~~~~~la~~~~ 37 (190)
T 4a0z_A 17 IRQQIDSNPFITDHELSDLFQ 37 (190)
T ss_dssp HHHHHHHCTTCCHHHHHHHHT
T ss_pred HHHHHHHCCCEeHHHHHHHHC
Confidence 334444559999999998776
No 446
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=30.43 E-value=54 Score=23.01 Aligned_cols=48 Identities=10% Similarity=0.164 Sum_probs=32.3
Q ss_pred CCChHHHHHHHHH----HHHc-----CCccEEeeCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 9 RMKTQSVIDRIVE----LQKT-----GALTGVIDDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 9 ~lktq~vI~RI~e----L~~~-----g~ltGViDDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
+|+.+++++-+.. .... +--.+|++..|.|-.++++|++.+.+-|..+
T Consensus 182 ~ms~eea~~la~~al~~~~~~~~sg~~i~v~vi~~~~~~~~~~~~ei~~~~~~~~~~ 238 (242)
T 1ryp_E 182 SLTLKEAELLVLKILKQVMEEKLDENNAQLSCITKQDGFKIYDNEKTAELIKELKEK 238 (242)
T ss_dssp TCCHHHHHHHHHHHHHHHCSSCCCTTSEEEEEEETTTEEEECCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCeEECCHHHHHHHHHHHhhh
Confidence 5777776654332 2222 1123688888889999999999988777654
No 447
>1wdc_C Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Z 1kqm_C* 1kwo_C* 1l2o_C* 1qvi_Z* 1s5g_Z* 1sr6_C 1b7t_Z 3jvt_C 3jtd_C 1kk8_C* 2ec6_C 1dfk_Z 1dfl_Z* 2w4t_Z 2w4v_Z 2w4w_Z 2otg_C* 2os8_C* 3pn7_C ...
Probab=30.43 E-value=43 Score=20.23 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=7.7
Q ss_pred ccceeHHHHHHhc
Q psy11008 71 KGRVSVSELVENS 83 (96)
Q Consensus 71 ~GRVsi~eL~~~s 83 (96)
.|+|+..|++...
T Consensus 136 dg~i~~~eF~~~~ 148 (156)
T 1wdc_C 136 EGNVKYEDFVKKV 148 (156)
T ss_dssp TSEEEHHHHHHHH
T ss_pred CCcEeHHHHHHHH
Confidence 5666666665543
No 448
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=30.38 E-value=39 Score=24.15 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=30.4
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEEL 46 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl 46 (96)
.|+|..+|++.+ |+..|.++|.|.+|-. |+..+|....+
T Consensus 35 ~EVAe~LgVs~s----rV~~LIr~G~L~AVr~--Gr~~rVP~~f~ 73 (148)
T 2kfs_A 35 PRVAELLGVPVS----KVAQQLREGHLVAVRR--AGGVVIPQVFF 73 (148)
T ss_dssp HHHHHHHTCCHH----HHHHHHHTTSCCCEEE--TTEEEEEGGGB
T ss_pred HHHHHHhCCCHH----HHHHHHHCCCceEEEE--CCEEEecHHHh
Confidence 688999999865 5667889999999998 46666766554
No 449
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=30.28 E-value=35 Score=20.11 Aligned_cols=45 Identities=13% Similarity=0.199 Sum_probs=20.8
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHhcc
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVENSN 84 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~sN 84 (96)
+||.+|+..+..-+... ..+++..+-..+ ...|+||..|++....
T Consensus 92 ~i~~~e~~~~l~~~g~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 139 (145)
T 2bl0_B 92 TIQEAELRQLLLNLGDALTSSEVEELMKEVSVSGDGAINYESFVDMLV 139 (145)
T ss_dssp EEEHHHHHHHHHHSSSCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHHH
T ss_pred eEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCCcEeHHHHHHHHH
Confidence 56666666554322100 112222222222 2457777777766543
No 450
>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}
Probab=30.27 E-value=49 Score=21.36 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=10.9
Q ss_pred CccEEeeCCCceE-EEcHHH
Q psy11008 27 ALTGVIDDRGKFI-YISQEE 45 (96)
Q Consensus 27 ~ltGViDDRGKfI-yIs~eE 45 (96)
.+--|+|+.|+++ .||.+.
T Consensus 116 ~~lpVVd~~g~l~GiiT~~D 135 (156)
T 3k6e_A 116 SFLPVVDAEGIFQGIITRKS 135 (156)
T ss_dssp SEEEEECTTSBEEEEEEHHH
T ss_pred CCeEEEecCCEEEEEEEHHH
Confidence 3456777777776 334433
No 451
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=30.17 E-value=83 Score=20.84 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=26.8
Q ss_pred CCChHHHHHHHHHHHHcCCccEEeeCCCceEEE
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVIDDRGKFIYI 41 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyI 41 (96)
+++..-|-.-++.|++.|.+.-+-.+.|+.-|-
T Consensus 49 ~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~ 81 (150)
T 2w57_A 49 EIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFE 81 (150)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEE
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEE
Confidence 677777888899999999999887766776664
No 452
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=30.01 E-value=38 Score=22.26 Aligned_cols=12 Identities=17% Similarity=0.401 Sum_probs=6.6
Q ss_pred cccceeHHHHHH
Q psy11008 70 QKGRVSVSELVE 81 (96)
Q Consensus 70 ~~GRVsi~eL~~ 81 (96)
..|+||..|++.
T Consensus 180 ~dG~Is~~EF~~ 191 (197)
T 3pm8_A 180 GDGEIDFHEFML 191 (197)
T ss_dssp CSSSEEHHHHHH
T ss_pred CCCcCcHHHHHH
Confidence 345666655554
No 453
>2hpk_A Photoprotein berovin; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Beroe abyssicola}
Probab=29.67 E-value=24 Score=22.86 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=29.9
Q ss_pred EEcHHHHHHHHHHHHhhchhchhhhhhhh--ccccceeHHHHHHhcccce
Q psy11008 40 YISQEELNSVATFIKQRGREELNSVATFI--KQKGRVSVSELVENSNQLV 87 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~rgr~~~~~~~~~~--~~~GRVsi~eL~~~sN~lI 87 (96)
+||.+|+..+..-+. -..+++..+-..+ ...|+||..|++....+..
T Consensus 144 ~Is~~El~~~l~~~g-~~~~~~~~~~~~~D~d~dG~I~~~EF~~~~~~~~ 192 (208)
T 2hpk_A 144 TVDVDELKTMMKAFD-VPQEAAYTFFEKADTDKSGKLERTELVHLFRKFW 192 (208)
T ss_dssp SBCHHHHHHHHHHTT-SCTTHHHHHHHHHCTTCCSSBCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhC-cCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHh
Confidence 589999987764432 2223333333332 3579999999998877654
No 454
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=29.66 E-value=1.7e+02 Score=21.77 Aligned_cols=45 Identities=9% Similarity=0.082 Sum_probs=33.5
Q ss_pred hHHHHHHHHHHHHcCCccEEeeCCCc--eEEEcHHHHHHHHHHHHhh
Q psy11008 12 TQSVIDRIVELQKTGALTGVIDDRGK--FIYISQEELNSVATFIKQR 56 (96)
Q Consensus 12 tq~vI~RI~eL~~~g~ltGViDDRGK--fIyIs~eEl~~Va~fI~~r 56 (96)
+.++++.+.+|.+.|.+-..+-+-|= |++..+++.+.|++.+++.
T Consensus 266 ~~~i~~~~~~~~~~Ga~~a~~SGaGPtv~~l~~~~~a~~v~~~l~~~ 312 (332)
T 3qt5_A 266 SYDAMAIVEQCRKANLPCYFTMDAGPNVKVLVEKKNKQAVMEQFLKV 312 (332)
T ss_dssp HHHHHHHHHHHHHTTCCEEEECCSSSCEEEEEEHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCCcEEEEeCCCCcEEEEECHHHHHHHHHHHHHh
Confidence 45677888888889988766666665 4455667788899998876
No 455
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=29.65 E-value=1e+02 Score=19.08 Aligned_cols=40 Identities=15% Similarity=0.223 Sum_probs=19.5
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~ 51 (96)
..+....+++.+++ .++.+.-.. .|..| +||.+|+..+..
T Consensus 7 ~~l~~~~~~s~~~i-~~l~~~fd~------~d~~G---~i~~~e~~~~l~ 46 (183)
T 1s6c_A 7 EQLEAQTNFTKREL-QVLYRGFKN------EXPSG---VVNEETFKQIYA 46 (183)
T ss_dssp HHHHHHSSCCHHHH-HHHHHHHHH------HCTTS---EECHHHHHHHHH
T ss_pred HHHHHhcCCCHHHH-HHHHHHHHH------hCCCC---cCCHHHHHHHHH
Confidence 45666667754443 333332221 13344 466666665543
No 456
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=29.55 E-value=69 Score=17.53 Aligned_cols=13 Identities=15% Similarity=0.299 Sum_probs=9.0
Q ss_pred EcHHHHHHHHHHH
Q psy11008 41 ISQEELNSVATFI 53 (96)
Q Consensus 41 Is~eEl~~Va~fI 53 (96)
++.+.+..+|.++
T Consensus 50 ~~~~~l~~la~~l 62 (77)
T 2b5a_A 50 ISLINIHKICAAL 62 (77)
T ss_dssp CBHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHh
Confidence 5777777777665
No 457
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=29.40 E-value=40 Score=19.06 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=28.2
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHhcccc
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVENSNQL 86 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~sN~l 86 (96)
+|+.+|+..+..-+... ..+++..+-..+ ...|+|+..|++....+.
T Consensus 36 ~i~~~el~~~l~~~g~~~~~~~~~~l~~~~D~~~dg~i~~~eF~~~~~~~ 85 (90)
T 1avs_A 36 DISTKELGTVMRMLGQNPTKEELDAIIEEVDEDGSGTIDFEEFLVMMVRQ 85 (90)
T ss_dssp EECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTCCSSEEHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHH
Confidence 68888888765433211 123444443333 357999999998766543
No 458
>1k8u_A S100A6, calcyclin, CACY; calcium regulatory protein, calcium free, signaling protein; HET: MSE; 1.15A {Homo sapiens} SCOP: a.39.1.2 PDB: 1k96_A 1k9k_A 1k9p_A 1a03_A 1cnp_A 1jwd_A 2cnp_A 2jtt_A
Probab=29.32 E-value=37 Score=18.92 Aligned_cols=46 Identities=17% Similarity=0.187 Sum_probs=27.0
Q ss_pred EEcHHHHHHHHHH---HHh-hchhchhhhhhhh--ccccceeHHHHHHhccc
Q psy11008 40 YISQEELNSVATF---IKQ-RGREELNSVATFI--KQKGRVSVSELVENSNQ 85 (96)
Q Consensus 40 yIs~eEl~~Va~f---I~~-rgr~~~~~~~~~~--~~~GRVsi~eL~~~sN~ 85 (96)
+|+.+|+..+..- +.. -..+++..+-..+ ...|+|+..|+.....+
T Consensus 28 ~i~~~el~~~l~~~~~~g~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~ 79 (90)
T 1k8u_A 28 TLSKKELKELIQKELTIGSKLQDAEIARLMEDLDRNKDQEVNFQEYVTFLGA 79 (90)
T ss_dssp EEEHHHHHHHHHHHSCCGGGTTSHHHHHHHHHHHHTTTCEEEHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhcccCCCCCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHH
Confidence 6889998877653 211 1123343333322 45799999998765443
No 459
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=29.31 E-value=38 Score=19.15 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=11.7
Q ss_pred EeeCCCceEEEcHH
Q psy11008 31 VIDDRGKFIYISQE 44 (96)
Q Consensus 31 ViDDRGKfIyIs~e 44 (96)
++|..|+++|+++.
T Consensus 8 ~~d~~g~i~~~N~a 21 (119)
T 2vv6_A 8 VIDGHGIIQLFSTA 21 (119)
T ss_dssp EEETTSBEEEECHH
T ss_pred EECCCCeEEEEhHH
Confidence 47999999999874
No 460
>4hi4_A Aerotaxis transducer AER2; PAS domain, diatomic GAS sensor, signaling protein; HET: HEM GOL; 2.30A {Pseudomonas aeruginosa}
Probab=29.31 E-value=36 Score=19.79 Aligned_cols=28 Identities=18% Similarity=0.322 Sum_probs=17.8
Q ss_pred HHHHHHHHcCCccE--EeeCCCceEEEcHHH
Q psy11008 17 DRIVELQKTGALTG--VIDDRGKFIYISQEE 45 (96)
Q Consensus 17 ~RI~eL~~~g~ltG--ViDDRGKfIyIs~eE 45 (96)
.|++.+... .-.| ++|..|+.+|+.+.=
T Consensus 5 ~rl~~il~~-~~~gviv~D~~g~I~~~N~a~ 34 (121)
T 4hi4_A 5 ARIASALDN-VSANVMIADNDLNIIYMNRTV 34 (121)
T ss_dssp HHHHHHHTT-SSSEEEEEETTCBEEEECHHH
T ss_pred HHHHHHHhc-CCccEEEEcCCCeEEEecHHH
Confidence 344444332 2344 469999999999853
No 461
>3bhp_A UPF0291 protein YNZC; NESG, SR384, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.01A {Bacillus subtilis}
Probab=29.31 E-value=28 Score=21.80 Aligned_cols=30 Identities=27% Similarity=0.244 Sum_probs=20.3
Q ss_pred ChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHH
Q psy11008 11 KTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVA 50 (96)
Q Consensus 11 ktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va 50 (96)
-+++.|+||++|-+--.-.| +|++|...=+
T Consensus 2 m~~~~i~RINeLakK~K~~g----------LT~eEk~EQ~ 31 (60)
T 3bhp_A 2 ISNAKIARINELAAKAKAGV----------ITEEEKAEQQ 31 (60)
T ss_dssp CCHHHHHHHHHHHHHHHHTC----------CCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhccC----------CCHHHHHHHH
Confidence 35778999999976555555 3666665443
No 462
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=29.31 E-value=56 Score=17.71 Aligned_cols=12 Identities=25% Similarity=0.196 Sum_probs=5.8
Q ss_pred EcHHHHHHHHHH
Q psy11008 41 ISQEELNSVATF 52 (96)
Q Consensus 41 Is~eEl~~Va~f 52 (96)
++.+.+..+|.+
T Consensus 53 ~~~~~l~~l~~~ 64 (74)
T 1y7y_A 53 VSLVNILKLATA 64 (74)
T ss_dssp CBHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 444445555444
No 463
>2jvd_A UPF0291 protein YNZC; solution structure, construct optimization, cytoplasm, structural genomics, unknown function, PSI-2; NMR {Bacillus subtilis}
Probab=29.21 E-value=29 Score=21.42 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=14.6
Q ss_pred ChHHHHHHHHHHHHcCCccE
Q psy11008 11 KTQSVIDRIVELQKTGALTG 30 (96)
Q Consensus 11 ktq~vI~RI~eL~~~g~ltG 30 (96)
-+++.|+||++|-+--.-.|
T Consensus 2 m~~~~i~RINeLakK~K~~g 21 (54)
T 2jvd_A 2 ISNAKIARINELAAKAKAGV 21 (54)
T ss_dssp CCHHHHHHHHHHHHHHHHTC
T ss_pred CcHHHHHHHHHHHHHHhccC
Confidence 35778999999976555455
No 464
>3mml_B Allophanate hydrolase subunit 1; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=29.18 E-value=21 Score=26.64 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=17.6
Q ss_pred ChhhhhhhCCChHHHHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIV 20 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~ 20 (96)
|+++|+.-||+.++||++.-
T Consensus 116 L~~vA~~~GLs~~eVi~~Hs 135 (228)
T 3mml_B 116 LHEVASLTGMTPAQVIAAHT 135 (228)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHHh
Confidence 58899999999999998864
No 465
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=28.74 E-value=45 Score=19.66 Aligned_cols=45 Identities=22% Similarity=0.350 Sum_probs=28.0
Q ss_pred EEcHHHHHHHHHHH-Hh-hchhchhhhhhhh--ccccceeHHHHHHhcc
Q psy11008 40 YISQEELNSVATFI-KQ-RGREELNSVATFI--KQKGRVSVSELVENSN 84 (96)
Q Consensus 40 yIs~eEl~~Va~fI-~~-rgr~~~~~~~~~~--~~~GRVsi~eL~~~sN 84 (96)
+||.+|+..+..-+ .. -..+++..+...+ ...|+||..|++....
T Consensus 104 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~d~~~dg~i~~~eF~~~~~ 152 (153)
T 3ox6_A 104 EISTSELREAMRALLGHQVGHRDIEEIIRDVDLNGDGRVDFEEFVRMMS 152 (153)
T ss_dssp SBCHHHHHHHHHHHHSSCCCHHHHHHHHHHHCSSSSSSBCHHHHHHHTC
T ss_pred cCcHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHHh
Confidence 58999998776542 11 1223444444433 3679999999987654
No 466
>2krc_A DNA-directed RNA polymerase subunit delta; delta subunit, GRAM-positive bacteria, nucleotidyltransferase, transcription, transferase; NMR {Bacillus subtilis}
Probab=28.72 E-value=16 Score=24.37 Aligned_cols=37 Identities=24% Similarity=0.541 Sum_probs=22.2
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQE 44 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~e 44 (96)
++++...+++-+++-+||-++-.+ +.-+|+||++.+.
T Consensus 37 ~eV~~~~~~s~ee~~~~iaqfYTd------Ln~DGRFi~lGen 73 (99)
T 2krc_A 37 NEIASLLGVKKEELGDRIAQFYTD------LNIDGRFLALSDQ 73 (99)
T ss_dssp HHHHHHHTSCGGGGTHHHHHHHHH------HHTCSSCEESSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHH------HhccCCeeECCCC
Confidence 345566666666666666555443 3346788887653
No 467
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=28.63 E-value=54 Score=19.26 Aligned_cols=43 Identities=30% Similarity=0.432 Sum_probs=26.3
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHh
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVEN 82 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~ 82 (96)
+|+.+|+..+..-+... ..+++..+...+ ...|+|+..|+...
T Consensus 45 ~I~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I~~~EF~~~ 90 (94)
T 2kz2_A 45 YISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQM 90 (94)
T ss_dssp CBCHHHHHHHHHHHTCCCCHHHHHHHHHHHCTTCSSSBCHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHH
Confidence 58888888776544211 233444444333 35789999998764
No 468
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=28.62 E-value=36 Score=24.05 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=20.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcC
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTG 26 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g 26 (96)
+|||..|+++.+-+..=+.+|...+
T Consensus 30 ~~la~~~~vs~~TiRrDl~eL~~~~ 54 (190)
T 4a0z_A 30 HELSDLFQVSIQTIRLDRTYLNIPE 54 (190)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHTCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHhcCcc
Confidence 7999999998877766688887665
No 469
>2k5e_A Uncharacterized protein; helix protein, structural genomic, structural genomics, PSI-2, protein structure initiative; NMR {Methanococcus jannaschii}
Probab=28.55 E-value=42 Score=20.56 Aligned_cols=25 Identities=12% Similarity=0.215 Sum_probs=21.7
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHHc
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQKT 25 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~~ 25 (96)
|++-|...|+..+.+++.+++..++
T Consensus 43 L~~Aa~~~gid~~~ll~~Ln~~~~~ 67 (73)
T 2k5e_A 43 LEQGANAHGLNVEDILRDLNALALE 67 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999988765
No 470
>3o18_A C-phycocyanin alpha subunit; phycobilisome, photosynthesis, light harvesting, cyanobacter; HET: CYC; 1.35A {Thermosynechococcus vulcanus} SCOP: a.1.1.3 PDB: 1i7y_A* 1on7_A* 1ktp_A* 3o2c_A* 3l0f_A* 1jbo_A* 3kvs_A* 3brp_A* 1phn_A* 2bv8_A* 1f99_A* 1gh0_A* 2uum_A* 1ha7_A* 1cpc_A* 2uul_C* 2uul_A* 2uun_A*
Probab=28.53 E-value=15 Score=25.93 Aligned_cols=22 Identities=36% Similarity=0.628 Sum_probs=18.2
Q ss_pred eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 33 DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 33 DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
|.+|+| +|..||+++..|+++-
T Consensus 13 D~~gRy--ls~~EL~~l~~~~~~~ 34 (162)
T 3o18_A 13 DTQGRF--LSNTELQAVDGRFKRA 34 (162)
T ss_dssp HHTTCC--CCHHHHHHHHHHHHHH
T ss_pred HhcCCC--CCHHHHHHHHHHHhch
Confidence 456775 7999999999999875
No 471
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA binding, cell cycle; NMR {Salmonella enterica} SCOP: a.43.1.3
Probab=28.49 E-value=80 Score=19.87 Aligned_cols=28 Identities=14% Similarity=0.379 Sum_probs=22.6
Q ss_pred EEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHh
Q psy11008 39 IYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVEN 82 (96)
Q Consensus 39 IyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~ 82 (96)
|||+++--..+-.+-.++ | +|++|+++.
T Consensus 39 i~i~~~lh~rlK~~Aa~~---------------g-~Smsdvvre 66 (76)
T 1p94_A 39 VNFDEEKHTRFKAACARK---------------G-TSITDVVNQ 66 (76)
T ss_dssp EEEEHHHHHHHHHHHHHH---------------T-CCHHHHHHH
T ss_pred EEcCHHHHHHHHHHHHHc---------------C-CCHHHHHHH
Confidence 789998888888777788 4 788888764
No 472
>2hps_A Coelenterazine-binding protein with bound coelent; bioluminescence, southeast collabora structural genomics, secsg, structural genomics, PSI; HET: CTZ; 1.72A {Renilla muelleri} PDB: 2hq8_A
Probab=28.42 E-value=72 Score=19.79 Aligned_cols=48 Identities=15% Similarity=0.306 Sum_probs=29.6
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHhcccce
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVENSNQLV 87 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~sN~lI 87 (96)
+||.+|+..+..-+... ..+++..+-..+ ...|+||..|+......+.
T Consensus 118 ~I~~~E~~~~l~~~g~~~~~~~~~~~~~~~D~d~dG~i~~~ef~~~~~~~~ 168 (186)
T 2hps_A 118 YVSLPEFKAFLQAVGPDLTDDKAITCFNTLDFNKNGQISRDEFLVTVNDFL 168 (186)
T ss_dssp EEEHHHHHHHHHHHCTTCCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHhCCCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHHh
Confidence 68999988776544211 122333333333 3579999999988766554
No 473
>2qkp_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 1.75A {Streptococcus mutans}
Probab=28.37 E-value=26 Score=22.93 Aligned_cols=14 Identities=14% Similarity=0.425 Sum_probs=12.6
Q ss_pred EeeCCCceEEEcHH
Q psy11008 31 VIDDRGKFIYISQE 44 (96)
Q Consensus 31 ViDDRGKfIyIs~e 44 (96)
++|..|+++|+++.
T Consensus 34 ~vD~~g~I~~~N~a 47 (151)
T 2qkp_A 34 FVNKDDIFQYYNDS 47 (151)
T ss_dssp EEETTSBEEEECCC
T ss_pred EEcCCCeEEEEeCC
Confidence 58999999999886
No 474
>2k53_A A3DK08 protein; NESG, CMR9, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium thermocellum atcc 27405}
Probab=28.32 E-value=40 Score=20.86 Aligned_cols=24 Identities=17% Similarity=0.368 Sum_probs=20.6
Q ss_pred ChhhhhhhCCChHHHHHHHHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVELQK 24 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL~~ 24 (96)
|++.|...|+..+.+++.|+++.+
T Consensus 41 LeeA~~~hgiD~d~ll~eLn~~i~ 64 (76)
T 2k53_A 41 IEDACAVHGIDADKLVKELNEYFE 64 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Confidence 478889999999999999998764
No 475
>2phc_B Uncharacterized protein PH0987; structural genomics, southeas collaboratory for structural genomics, secsg, PSI, protein initiative; 2.29A {Pyrococcus horikoshii} SCOP: b.62.1.4 d.74.5.1
Probab=28.30 E-value=22 Score=26.30 Aligned_cols=20 Identities=20% Similarity=0.174 Sum_probs=17.0
Q ss_pred ChhhhhhhCCChHHHHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIV 20 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~ 20 (96)
|+++|++-||+.++||++.-
T Consensus 100 L~~vA~~~gLs~~evi~~H~ 119 (225)
T 2phc_B 100 IEFVAQYNGLSVDDVIEIHS 119 (225)
T ss_dssp HHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHhCcCHHHHHHHhh
Confidence 57899999999999998753
No 476
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=28.21 E-value=71 Score=16.78 Aligned_cols=36 Identities=25% Similarity=0.400 Sum_probs=22.3
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFI 53 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI 53 (96)
++||...|++ +..+.++. +|+. .++.+.+..+|.++
T Consensus 18 ~~lA~~~gis-~~~i~~~e--------------~g~~-~~~~~~l~~i~~~l 53 (66)
T 2xi8_A 18 SELAALLEVS-RQTINGIE--------------KNKY-NPSLQLALKIAYYL 53 (66)
T ss_dssp HHHHHHHTSC-HHHHHHHH--------------TTSC-CCCHHHHHHHHHHT
T ss_pred HHHHHHHCcC-HHHHHHHH--------------cCCC-CCCHHHHHHHHHHH
Confidence 4677777774 34444543 2332 35788888888775
No 477
>2vml_A Phycocyanin alpha chain; photosynthesis, light-harvesting, electron transport, transp chromophore, bIle pigment, phycobilisome; HET: CYC; 2.40A {Gloeobacter violaceus} PDB: 2vjr_A*
Probab=28.21 E-value=16 Score=25.76 Aligned_cols=22 Identities=23% Similarity=0.540 Sum_probs=18.6
Q ss_pred eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 33 DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 33 DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
|.+|+| +|..||+++..|+++-
T Consensus 13 D~~gRy--ls~~eL~~l~~~~~~~ 34 (162)
T 2vml_A 13 DSQGRF--LNNTELQAANGRFQRA 34 (162)
T ss_dssp HHTTCC--CCHHHHHHHHHHHHHH
T ss_pred HhcCCC--CCHHHHHHHHHHHhhh
Confidence 677775 7999999999998765
No 478
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=28.09 E-value=55 Score=21.56 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.8
Q ss_pred hhhhhhh-CCChHHHHHHHHHHHHcCCc
Q psy11008 2 EDLAALF-RMKTQSVIDRIVELQKTGAL 28 (96)
Q Consensus 2 edLAa~F-~lktq~vI~RI~eL~~~g~l 28 (96)
.|++..| +++.-+|-.-+.+|..+|.|
T Consensus 25 ~D~~k~~P~~k~r~vKK~~~~LV~Eg~l 52 (78)
T 1ucr_A 25 NDFTDLFPDMKQREVKKILTALVNDEVL 52 (78)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHccccCHHHHHHHHHHHHhcCce
Confidence 5899999 99999999999999999877
No 479
>3iz5_K 60S ribosomal protein L13A (L13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_K
Probab=28.01 E-value=30 Score=25.95 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=18.7
Q ss_pred ChhhhhhhCCChHHHHHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVE 21 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~e 21 (96)
|.+||.++|-+-|++++++++
T Consensus 143 lg~ls~~~Gwk~~~vv~~le~ 163 (206)
T 3iz5_K 143 LGQLSKEVGWNYADTIRELEE 163 (206)
T ss_dssp HHHHGGGTCTTHHHHHHHHHH
T ss_pred HHHHHHHHCchHHHHHHHHHH
Confidence 468999999999999998875
No 480
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=28.01 E-value=1.2e+02 Score=20.70 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=39.2
Q ss_pred CChHHHHHHHHHHHHcCCccE------Eee-------CCCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccce-e
Q psy11008 10 MKTQSVIDRIVELQKTGALTG------VID-------DRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRV-S 75 (96)
Q Consensus 10 lktq~vI~RI~eL~~~g~ltG------ViD-------DRGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRV-s 75 (96)
...++++.+|+.+...+.-.- .+| ..|+.+.+|+.|++-+.-+.+.. |++ |
T Consensus 139 ~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ll~~g~---------------~~~~s 203 (249)
T 3q9s_A 139 FHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALLIRQP---------------GRVYS 203 (249)
T ss_dssp CCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHHHHST---------------TCCCC
T ss_pred CCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHHHHHHCC---------------CceEc
Confidence 456888899998876543211 223 24566779999999888888876 554 6
Q ss_pred HHHHHH
Q psy11008 76 VSELVE 81 (96)
Q Consensus 76 i~eL~~ 81 (96)
-+|+++
T Consensus 204 ~~eIa~ 209 (249)
T 3q9s_A 204 RQEIGQ 209 (249)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 677766
No 481
>3l0f_B C-phycocyanin beta chain; photosynthesis, photosystem II, light harvesting proteins, thermostability, bIle pigment; HET: CYC; 1.35A {Thermosynechococcus elongatus} SCOP: a.1.1.3 PDB: 1i7y_B* 1ktp_B* 1on7_B* 1jbo_B* 3o18_B* 3o2c_B* 1phn_B* 3kvs_B* 3brp_B* 1gh0_B* 1cpc_B* 1ha7_B* 2bv8_B* 2uul_D* 2uum_X* 1f99_B* 2uum_B* 2uul_B* 2uun_B* 2uul_H* ...
Probab=27.93 E-value=15 Score=26.36 Aligned_cols=22 Identities=18% Similarity=0.703 Sum_probs=18.0
Q ss_pred eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 33 DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 33 DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
|.+|+ |+|..||+++..|+++-
T Consensus 13 D~~gR--yls~~EL~~l~~~~~~~ 34 (172)
T 3l0f_B 13 DARGE--FLTNAQFDALSNLVKEG 34 (172)
T ss_dssp HHHTC--CCCHHHHHHHHHHHHTH
T ss_pred HhcCC--CCCHHHHHHHHHHHhhh
Confidence 45666 47999999999999865
No 482
>2kvc_A Putative uncharacterized protein; structural genomics, seattle structural genomi for infectious disease, ssgcid, unknown function; NMR {Mycobacterium tuberculosis}
Probab=27.92 E-value=22 Score=24.34 Aligned_cols=59 Identities=17% Similarity=0.256 Sum_probs=36.0
Q ss_pred HHHHHHHHHHcCCccEEeeC---------CCceEEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeHHHHHHhccc
Q psy11008 15 VIDRIVELQKTGALTGVIDD---------RGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVENSNQ 85 (96)
Q Consensus 15 vI~RI~eL~~~g~ltGViDD---------RGKfIyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi~eL~~~sN~ 85 (96)
.+.+|......|--.||=.. |= -+|++|+..||..+-.+ |.++-.|+....++
T Consensus 7 ~l~siv~WLRaGYP~GVP~~Dy~PLlALL~r---~Ltdeev~~Va~~L~~~---------------~~i~~~dI~~~I~~ 68 (103)
T 2kvc_A 7 FLTSIVAWLRAGYPEGIPPTDSFAVLALLCR---RLSHDEVKAVANELMRL---------------GDFDQIDIGVVITH 68 (103)
T ss_dssp HHHHHHHHHHHHCTTCCCHHHHHHHHHHHTT---TSCHHHHHHHHHHHHHH---------------TSSCSSCHHHHHHS
T ss_pred HHHHHHHHHHccCCCCCCCcchHHHHHHHhc---cCCHHHHHHHHHHHHHc---------------CCCCHHHHHHHHHH
Confidence 44555555555555554321 11 27999999999999988 55655555555555
Q ss_pred ceeccc
Q psy11008 86 LVTLIP 91 (96)
Q Consensus 86 lI~L~p 91 (96)
+.+=.|
T Consensus 69 vt~~~P 74 (103)
T 2kvc_A 69 FTDELP 74 (103)
T ss_dssp CCSSCS
T ss_pred HhccCC
Confidence 544333
No 483
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=27.68 E-value=13 Score=27.51 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=0.0
Q ss_pred hhhhhhh-CCChHHHHHHHHHHHHcCCccEEeeCC
Q psy11008 2 EDLAALF-RMKTQSVIDRIVELQKTGALTGVIDDR 35 (96)
Q Consensus 2 edLAa~F-~lktq~vI~RI~eL~~~g~ltGViDDR 35 (96)
++|++.+ ++...++.+-+.+|..+|.|-==+||.
T Consensus 228 ~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd~ 262 (270)
T 2pi2_A 228 QDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDDD 262 (270)
T ss_dssp -----------------------------------
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHhCCEEecccccc
Confidence 5789888 699999999999999999887666663
No 484
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=27.56 E-value=31 Score=23.44 Aligned_cols=31 Identities=16% Similarity=0.340 Sum_probs=21.1
Q ss_pred HcCCccEEeeCCCceEEEcHHHHHHHHHHHHhhc
Q psy11008 24 KTGALTGVIDDRGKFIYISQEELNSVATFIKQRG 57 (96)
Q Consensus 24 ~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~~rg 57 (96)
..|+ .|.|=.-+. .+|++|+.+|+.||+...
T Consensus 102 ~~G~-~g~MP~~~~--~Lsd~ei~~laaYl~sl~ 132 (172)
T 2c8s_A 102 FGGA-NGMMGPHNE--NLTPDEMLQTIAWIRHLY 132 (172)
T ss_dssp HTCT-TSSSCSCCC--CSCHHHHHHHHHHHHHTC
T ss_pred HhCC-CCCCCCCCC--CCCHHHHHHHHHHHHHhc
Confidence 4564 344432221 479999999999999863
No 485
>1lfp_A Hypothetical protein AQ_1575; NEW fold, thermostability, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; 1.72A {Aquifex aeolicus} SCOP: e.39.1.1
Probab=27.55 E-value=30 Score=26.47 Aligned_cols=57 Identities=21% Similarity=0.217 Sum_probs=38.7
Q ss_pred EEeeCCCce-EEEcHHHHHHHHHHHHhhchhchhhhhhhhccccceeH--HHHHHhcccce
Q psy11008 30 GVIDDRGKF-IYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSV--SELVENSNQLV 87 (96)
Q Consensus 30 GViDDRGKf-IyIs~eEl~~Va~fI~~rgr~~~~~~~~~~~~~GRVsi--~eL~~~sN~lI 87 (96)
=|.|+.|.| ||-.++++.+|.+-+.+.|-+-..+=-+|+-+. .|.+ .|-++...+||
T Consensus 163 Dv~~e~~~~~v~t~p~~~~~V~~aL~~~g~~~~~aei~~~P~~-~v~l~~~e~~~~~~kli 222 (249)
T 1lfp_A 163 DVQPGEEVHIIYTVPEELYEVKENLEKLGVPIEKAQITWKPIS-TVQINDEETAQKVIKLL 222 (249)
T ss_dssp EEECCSSEEEEEECGGGHHHHHHHHHTTTCCCSEEEEEEEESS-CEECCCHHHHHHHHHHH
T ss_pred eeecCCceEEEEECHHHHHHHHHHHHHcCCCeeeeeeEECCCC-ceecCCHHHHHHHHHHH
Confidence 345777888 888999999999999999865555555666553 4555 34444444443
No 486
>1t3u_A Conserved hypothetical protein; NYSGXRC, unknown ORF, COG3027, PSI, protein structure initiative; 2.50A {Pseudomonas aeruginosa PAO1} SCOP: d.244.1.1 PDB: 1w2e_A
Probab=27.47 E-value=73 Score=20.08 Aligned_cols=29 Identities=28% Similarity=0.337 Sum_probs=18.4
Q ss_pred ccEEeeCCCceEEEc---HHHHHHHHHHHHhh
Q psy11008 28 LTGVIDDRGKFIYIS---QEELNSVATFIKQR 56 (96)
Q Consensus 28 ltGViDDRGKfIyIs---~eEl~~Va~fI~~r 56 (96)
++=.|.++-=-|... ++.+.++|+|+.++
T Consensus 7 v~V~I~G~~Y~l~~~~~~ee~l~~aA~~vd~~ 38 (104)
T 1t3u_A 7 LTVQILDKEYCINCPDDERANLESAARYLDGK 38 (104)
T ss_dssp EEEEETTEEEEECCCTTTHHHHHHHHHHHHHH
T ss_pred EEEEECCEEEEeeCCCCCHHHHHHHHHHHHHH
Confidence 333444433333333 56899999999999
No 487
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=27.38 E-value=74 Score=17.58 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=23.6
Q ss_pred hhhhhhhCCChHHHHHHHHHHHHcCCccEEeeCCCceEEEcHHHHHHHHHHHH
Q psy11008 2 EDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIK 54 (96)
Q Consensus 2 edLAa~F~lktq~vI~RI~eL~~~g~ltGViDDRGKfIyIs~eEl~~Va~fI~ 54 (96)
++||...|++ +..|.++. +|+. .++.+.+..+|+++.
T Consensus 25 ~~lA~~~gis-~~~is~~e--------------~g~~-~~~~~~l~~ia~~l~ 61 (73)
T 3omt_A 25 LWLTETLDKN-KTTVSKWC--------------TNDV-QPSLETLFDIAEALN 61 (73)
T ss_dssp HHHHHHTTCC-HHHHHHHH--------------TTSS-CCCHHHHHHHHHHHT
T ss_pred HHHHHHHCcC-HHHHHHHH--------------cCCC-CCCHHHHHHHHHHHC
Confidence 4677777773 44455543 2443 378888888888874
No 488
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A
Probab=27.32 E-value=53 Score=24.46 Aligned_cols=47 Identities=15% Similarity=0.306 Sum_probs=36.0
Q ss_pred CCChHHHHHHHHHHHHcCCccEEee--CCCceEEEcHHHHHHHHHHHHhh
Q psy11008 9 RMKTQSVIDRIVELQKTGALTGVID--DRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 9 ~lktq~vI~RI~eL~~~g~ltGViD--DRGKfIyIs~eEl~~Va~fI~~r 56 (96)
.+..+....-++.|.+.| +.|++= .-|-|-++|.+|-..|.++..+.
T Consensus 31 ~iD~~~l~~lv~~li~~G-v~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~ 79 (307)
T 3s5o_A 31 EVDYGKLEENLHKLGTFP-FRGFVVQGSNGEFPFLTSSERLEVVSRVRQA 79 (307)
T ss_dssp CBCHHHHHHHHHHHTTSC-CSEEEESSGGGTGGGSCHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHHcC-CCEEEECccccchhhCCHHHHHHHHHHHHHH
Confidence 344555555566677666 888754 78999999999999999998775
No 489
>3mqq_A Transcriptional regulator, LUXR family; PAS domain, PSI, MCSG, structural genomics, center for structural genomics; 1.65A {Burkholderia thailandensis} PDB: 3mqo_A
Probab=27.28 E-value=31 Score=19.44 Aligned_cols=14 Identities=14% Similarity=0.079 Sum_probs=11.7
Q ss_pred EeeCCCceEEEcHH
Q psy11008 31 VIDDRGKFIYISQE 44 (96)
Q Consensus 31 ViDDRGKfIyIs~e 44 (96)
++|+.|+++|+++.
T Consensus 17 ~~~~~g~i~~~N~a 30 (120)
T 3mqq_A 17 VLSRDRVIEDCNDE 30 (120)
T ss_dssp EEEETTEEEEECHH
T ss_pred EEecCCEEHHHHHH
Confidence 46889999999874
No 490
>1m45_A MLC1P, myosin light chain; protein-peptide complex, myosin light chain, cell cycle protein; 1.65A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 1m46_A 1n2d_A 2fcd_A 2fce_A
Probab=27.21 E-value=50 Score=19.62 Aligned_cols=44 Identities=14% Similarity=0.282 Sum_probs=25.5
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh--ccccceeHHHHHHhc
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI--KQKGRVSVSELVENS 83 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~--~~~GRVsi~eL~~~s 83 (96)
+||.+|+..+..-+... ..+++..+...+ ...|+||..|++...
T Consensus 99 ~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~d~dg~i~~~eF~~~~ 145 (148)
T 1m45_A 99 KVSVGDLRYMLTGLGEKLTDAEVDELLKGVEVDSNGEIDYKKFIEDV 145 (148)
T ss_dssp EEEHHHHHHHHHHSTTCCCHHHHHHHHTTCCCCTTSEEEHHHHHHHH
T ss_pred cCCHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHH
Confidence 68888888776533111 122334333333 346889998887653
No 491
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=27.16 E-value=39 Score=25.48 Aligned_cols=23 Identities=26% Similarity=0.520 Sum_probs=16.1
Q ss_pred HHHcCCccEEeeC-CCceEEEcHH
Q psy11008 22 LQKTGALTGVIDD-RGKFIYISQE 44 (96)
Q Consensus 22 L~~~g~ltGViDD-RGKfIyIs~e 44 (96)
|++.+.+.=|++. .|+++|+|+.
T Consensus 92 l~~~~gfi~v~~~~~G~i~yvs~~ 115 (387)
T 4f3l_B 92 LRAADGFLFVVGCDRGKILFVSES 115 (387)
T ss_dssp HHTCCSEEEEEETTTCBEEEECTT
T ss_pred HhcCCCEEEEEecCCeEEEEEchh
Confidence 4455555567774 5999999963
No 492
>1ryl_A Hypothetical protein YFBM; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Escherichia coli} SCOP: d.276.1.1
Probab=27.14 E-value=52 Score=22.95 Aligned_cols=25 Identities=24% Similarity=0.371 Sum_probs=19.3
Q ss_pred ceEEEcH-HHHHHHHHHHHhhchhch
Q psy11008 37 KFIYISQ-EELNSVATFIKQRGREEL 61 (96)
Q Consensus 37 KfIyIs~-eEl~~Va~fI~~rgr~~~ 61 (96)
-|+|+|+ ++...+|+++.+.-.++|
T Consensus 83 ~~~~~t~~~~V~~ia~aL~~~~~~~l 108 (167)
T 1ryl_A 83 GFLGLTWNQELAATIDRLESLDRNEL 108 (167)
T ss_dssp CEEEEECHHHHHHHHHHHHHCCHHHH
T ss_pred ceEEeccHHHHHHHHHHHHcCCHHHH
Confidence 4788888 589999999998744433
No 493
>4a17_I RPL13A, 60S ribosomal protein L13A; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_I 4a1c_I 4a1e_I
Probab=27.02 E-value=30 Score=25.75 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.0
Q ss_pred ChhhhhhhCCChHHHHHHHHHH
Q psy11008 1 MEDLAALFRMKTQSVIDRIVEL 22 (96)
Q Consensus 1 ledLAa~F~lktq~vI~RI~eL 22 (96)
|.+||.++|-+-|++++++++=
T Consensus 137 lg~ls~~~Gwk~~~vv~~le~k 158 (198)
T 4a17_I 137 LGDLSASVGWGKQTLIEKLEEK 158 (198)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHhCchHHHHHHHHHHH
Confidence 4689999999999999988653
No 494
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=26.98 E-value=64 Score=18.87 Aligned_cols=45 Identities=20% Similarity=0.317 Sum_probs=26.4
Q ss_pred EEcHHHHHHHHHHHHhh-chhchhhhhhhh-ccccceeHHHHHHhcc
Q psy11008 40 YISQEELNSVATFIKQR-GREELNSVATFI-KQKGRVSVSELVENSN 84 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr~~~~~~~~~~-~~~GRVsi~eL~~~sN 84 (96)
+||.+|+..+..-+... ..+++..+...+ ...|+||..|+.+...
T Consensus 100 ~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~dg~i~~~eF~~~l~ 146 (147)
T 4ds7_A 100 LISAAELKHVLTSIGEKLTDAEVDEMLREVSDGSGEINIKQFAALLS 146 (147)
T ss_dssp EECHHHHHHHHHHTTCCCCHHHHHHHHHHHSSSCSSEEHHHHHHHTT
T ss_pred eECHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCCcCcHHHHHHHHh
Confidence 68999988776533211 122333222222 4679999999987543
No 495
>1kn1_B Allophycocyanin; helix-turn-helix, electron transport; HET: CYC; 2.20A {Porphyra yezoensis} SCOP: a.1.1.3 PDB: 1all_B* 3dbj_B* 2v8a_B* 1b33_B* 2vjt_B*
Probab=26.89 E-value=17 Score=25.53 Aligned_cols=22 Identities=14% Similarity=0.495 Sum_probs=19.1
Q ss_pred eCCCceEEEcHHHHHHHHHHHHhh
Q psy11008 33 DDRGKFIYISQEELNSVATFIKQR 56 (96)
Q Consensus 33 DDRGKfIyIs~eEl~~Va~fI~~r 56 (96)
|.+|+| +|..||+++..|+++-
T Consensus 13 D~~gRy--ls~~eL~~l~~~~~~~ 34 (161)
T 1kn1_B 13 DVQGKY--LDSSAIEKLKGYFQTG 34 (161)
T ss_dssp HTTTCC--CCHHHHHHHHHHHHHH
T ss_pred HhcCCC--CCHHHHHHHHHHHhhh
Confidence 677885 7999999999999875
No 496
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand, calcium-binding protein, guanylyl cyclase regulation, lyase; NMR {Bos taurus} SCOP: a.39.1.5
Probab=26.83 E-value=69 Score=20.51 Aligned_cols=46 Identities=22% Similarity=0.429 Sum_probs=29.1
Q ss_pred EEcHHHHHHHHHHHHh-hc-----------------hhchhhhhhhh--ccccceeHHHHHHhccc
Q psy11008 40 YISQEELNSVATFIKQ-RG-----------------REELNSVATFI--KQKGRVSVSELVENSNQ 85 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~-rg-----------------r~~~~~~~~~~--~~~GRVsi~eL~~~sN~ 85 (96)
+||.+|+..+..-+.. .| .+++..+-..+ ...|+||..|+.+...+
T Consensus 111 ~I~~~E~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~f~~~D~d~dG~Is~~Ef~~~~~~ 176 (204)
T 1jba_A 111 CIDRQELLDIVESIYKLKKACSVEVEAEQQGKLLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARR 176 (204)
T ss_dssp CBCHHHHHHHHHHHHHHHHHSSCCTTSSTTTCCCCHHHHHHHHHHHHCCSCCSCBCHHHHHHHHTT
T ss_pred cCcHHHHHHHHHHHHHHhCCCCccccccccCchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHc
Confidence 5999999988776532 11 12333333322 45799999999876643
No 497
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein, EF-finger, transport protein; 2.30A {Homo sapiens} SCOP: a.39.1.5
Probab=26.70 E-value=1e+02 Score=20.70 Aligned_cols=46 Identities=22% Similarity=0.469 Sum_probs=28.9
Q ss_pred EEcHHHHHHHHHHHHhh-ch------------hchhhhhhhh--ccccceeHHHHHHhccc
Q psy11008 40 YISQEELNSVATFIKQR-GR------------EELNSVATFI--KQKGRVSVSELVENSNQ 85 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~r-gr------------~~~~~~~~~~--~~~GRVsi~eL~~~sN~ 85 (96)
+||.+|+..+..-+.+. |. +++..+-.-+ ...|+||..|+.+.+.+
T Consensus 141 ~Is~~E~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~ 201 (224)
T 1s1e_A 141 YINKEEMMDIVKAIYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQE 201 (224)
T ss_dssp EECHHHHHHHHHHHHHHHTTCCCGGGCSSSHHHHHHHHHHHHCTTCSSCEEHHHHHHHHHT
T ss_pred eECHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHh
Confidence 59999998877655221 31 2333332222 35799999999877644
No 498
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport, ionic channel, membrane, PO potassium channel, potassium transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Probab=26.64 E-value=53 Score=22.12 Aligned_cols=46 Identities=22% Similarity=0.454 Sum_probs=29.6
Q ss_pred EEcHHHHHHHHHHHHh-------------hchhchhhhhhhh--ccccceeHHHHHHhccc
Q psy11008 40 YISQEELNSVATFIKQ-------------RGREELNSVATFI--KQKGRVSVSELVENSNQ 85 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~-------------rgr~~~~~~~~~~--~~~GRVsi~eL~~~sN~ 85 (96)
|||.+|+..+..-+-. --.+++..+-..+ ...|+||..|+.+.+.+
T Consensus 154 ~Is~~E~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~D~d~dG~Is~~EF~~~~~~ 214 (229)
T 3dd4_A 154 YITKEEMLDIMKAIYDMMGKCTYPVLKEDAPRQHVETFFQKMDKNKDGVVTIDEFIESCQK 214 (229)
T ss_dssp CCBHHHHHHHHHHHHHHCC-----------CCTHHHHHHHHHCSSCSSBCCHHHHHHHHHT
T ss_pred eECHHHHHHHHHHHHHHhccccCCCcchhhHHHHHHHHHHHhcCCCCCcEeHHHHHHHHHh
Confidence 6999999988776621 1123333333333 35799999999887654
No 499
>2w0n_A Sensor protein DCUS; signal transduction, two-component regulatory system, PAS, kinase, membrane, transferase, solid state cell inner membrane; NMR {Escherichia coli}
Probab=26.62 E-value=20 Score=19.39 Aligned_cols=16 Identities=31% Similarity=0.565 Sum_probs=13.2
Q ss_pred cEEeeCCCceEEEcHH
Q psy11008 29 TGVIDDRGKFIYISQE 44 (96)
Q Consensus 29 tGViDDRGKfIyIs~e 44 (96)
.=++|..|+++|+++.
T Consensus 28 i~~~d~~g~i~~~N~~ 43 (118)
T 2w0n_A 28 VVAVDDRGEVTLINDA 43 (118)
T ss_dssp CEEEBTTTBCCCBCHH
T ss_pred EEEECCCCcEeehhHH
Confidence 3468999999999875
No 500
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=26.56 E-value=1.3e+02 Score=23.06 Aligned_cols=21 Identities=24% Similarity=0.564 Sum_probs=18.7
Q ss_pred EEcHHHHHHHHHHHHhhchhc
Q psy11008 40 YISQEELNSVATFIKQRGREE 60 (96)
Q Consensus 40 yIs~eEl~~Va~fI~~rgr~~ 60 (96)
|.|++|+..+.+|-++||-+-
T Consensus 91 ~YT~~di~eiv~YA~~rgI~V 111 (367)
T 1yht_A 91 FLSYRQLDDIKAYAKAKGIEL 111 (367)
T ss_dssp EBCHHHHHHHHHHHHHTTCEE
T ss_pred CcCHHHHHHHHHHHHHcCCEE
Confidence 689999999999999998553
Done!