RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11008
(96 letters)
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural
genomics, riken structural genomics/proteomics
initiative, RSGI, unknown function; NMR {Mus musculus}
SCOP: a.4.5.47
Length = 72
Score = 67.6 bits (165), Expect = 8e-17
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQ 43
+EDLA ++TQ I+RI +L G LTGVIDDRGKFIYI+
Sbjct: 24 LEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66
>3pgb_A Putative uncharacterized protein; oxidoreductase, copper amine
oxidase, CAO, topaquinone, TPQ; HET: TPQ NAG BMA MAN;
2.45A {Emericella nidulans}
Length = 797
Score = 26.4 bits (57), Expect = 1.5
Identities = 7/41 (17%), Positives = 17/41 (41%)
Query: 41 ISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVE 81
++ +E VA ++ R L + + +++ EL
Sbjct: 71 LTDDETADVAKWLFGRPELNLTTTENAGEWDNTIALIELHR 111
>1tu5_A Copper amine oxidase, liver isozyme; oxidoreductase, quinoenzyme,
TPQ; HET: TPQ NAG NDG; 2.37A {Bos taurus} PDB: 2pnc_A*
3ala_A* 2y73_A* 1pu4_A* 1us1_A* 2y74_A* 2c10_A* 2c11_A*
Length = 746
Score = 26.4 bits (57), Expect = 1.6
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 41 ISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVE 81
+S+EEL +V +F+ Q+ +L A V EL
Sbjct: 46 LSREELTTVMSFLTQQLGPDLVDAAQARPSDNCVFSVELQL 86
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat,
transcription; 2.20A {Homo sapiens}
Length = 268
Score = 26.1 bits (57), Expect = 1.9
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 18 RIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQK 71
R+ L GAL D++ ++ E+ + I + G E +VATFI QK
Sbjct: 119 RLTSLGVIGALVK-TDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQK 171
>3o0a_A Leucyl-tRNA synthetase subunit alpha; CP1 hydrolytic DOM ligase,
aminoacyl-tRNA synthetase, ATP-binding, nucleotide-
protein biosynthesis; 1.77A {Aquifex aeolicus} PDB:
3pz0_A 3pz5_A
Length = 219
Score = 25.7 bits (57), Expect = 2.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 9 RMKTQSVIDRIVELQKTGALTG 30
+MK S +R +E K G G
Sbjct: 89 KMKKMSTRERTMEEDKEGVFLG 110
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
serotonin, salivary gland, binding, ligand binging
protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis}
PDB: 3q6p_A* 3q6t_A*
Length = 381
Score = 25.8 bits (56), Expect = 2.3
Identities = 8/72 (11%), Positives = 26/72 (36%)
Query: 23 QKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVEN 82
+ A+ D + K I+ ++ V+ + Q+ + + V +++ +
Sbjct: 273 KYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVD 332
Query: 83 SNQLVTLIPDQI 94
S + + +
Sbjct: 333 SKGGLWFMSNGF 344
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 2.5
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 13/73 (17%)
Query: 3 DLAALFRMKTQSVIDRIVELQKTGA----LTGVIDDRGKF--IYISQEELNSVATFIKQR 56
+L F + +VE K G L + + F Y+ +++++A + Q
Sbjct: 59 ELVGKF----LGYVSSLVEPSKVGQFDQVLNLCLTE---FENCYLEGNDIHALAAKLLQE 111
Query: 57 GREELNSVATFIK 69
L IK
Sbjct: 112 NDTTLVKTKELIK 124
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2,
protein structure initiative; 2.20A {Thermoplasma
acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Length = 230
Score = 25.5 bits (55), Expect = 3.3
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 3 DLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQE 44
LA + + QS I++L+K G +T + RG+ + I+++
Sbjct: 32 KLADMLGISQQSASRIIIDLEKNGYITRTVTKRGQILNITEK 73
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis}
PDB: 3qlk_A 3s8d_A
Length = 455
Score = 25.1 bits (55), Expect = 4.1
Identities = 11/82 (13%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 8 FRMKTQSVIDRIVELQKTGALTG--VIDDRGKFIYISQEELNSVATFIKQRGREEL---- 61
+ T+ + +V+L + G +T DRG+ ++ + ++
Sbjct: 259 LGIHTEVLNPGLVDLIRRGVVTNQRKTLDRGRSVFTFAMGQQEMYEYLNDHPAIFSRPVD 318
Query: 62 --NSVATFIKQKGRVSVSELVE 81
N + VS++ ++
Sbjct: 319 YVNDPHIIAQNDNVVSINATLQ 340
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein,
structural genomics, PSI-2, protein STRU initiative;
HET: COA; 2.40A {Shewanella oneidensis}
Length = 436
Score = 25.0 bits (55), Expect = 4.7
Identities = 10/82 (12%), Positives = 29/82 (35%), Gaps = 8/82 (9%)
Query: 8 FRMKTQSVIDRIVELQKTGALTGVID--DRGKFIYISQEELNSVATFIKQ------RGRE 59
+ T+ D I++L + G + GK + + ++ E
Sbjct: 228 LGVHTELFSDGILQLVEKGVINNTKKRFYPGKLVTGFALGSQKLYDYVDDNPAVIFMDIE 287
Query: 60 ELNSVATFIKQKGRVSVSELVE 81
++N + K ++++ ++
Sbjct: 288 QVNDTSIIRKNPNVMAINSALQ 309
>1auo_A Carboxylesterase; hydrolase; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.14 PDB: 1aur_A*
Length = 218
Score = 24.7 bits (54), Expect = 6.0
Identities = 2/17 (11%), Positives = 9/17 (52%)
Query: 40 YISQEELNSVATFIKQR 56
+ +E++ + ++ R
Sbjct: 200 EVLPQEIHDIGAWLAAR 216
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone
cofactor, oxidoreductase-electron transport complex;
HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB:
2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D*
3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D*
3svw_D* 3pxw_D* 3sle_D* 1mg2_A* 1mg3_A* 2mta_H* ...
Length = 386
Score = 24.5 bits (52), Expect = 8.7
Identities = 10/71 (14%), Positives = 16/71 (22%), Gaps = 6/71 (8%)
Query: 2 EDLAALFRMKTQSVIDRIVELQKTGALTG------VIDDRGKFIYISQEELNSVATFIKQ 55
D +F T I L G + GK + Q +
Sbjct: 108 TDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDL 167
Query: 56 RGREELNSVAT 66
G+ +
Sbjct: 168 EGKAFKRMLDV 178
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros
picked threonine kinase, SGC, structural genomics
consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB:
3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Length = 313
Score = 24.2 bits (53), Expect = 9.9
Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 14/58 (24%)
Query: 17 DRIVELQKTGALTGVIDDRGKFIYISQE----ELNSVATFIKQRGREELNSVATFIKQ 70
D+I+ L IY+ E +LNS ++K++ + ++ K
Sbjct: 88 DKIIRLY------DYEITDQY-IYMVMECGNIDLNS---WLKKKKSIDPWERKSYWKN 135
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.338
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,356,638
Number of extensions: 71491
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 242
Number of HSP's successfully gapped: 29
Length of query: 96
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 34
Effective length of database: 4,970,691
Effective search space: 169003494
Effective search space used: 169003494
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)