RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11008
(96 letters)
>d1wi9a_ a.4.5.47 (A:) Hypothetical protein C20orf116 homolog
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 72
Score = 68.2 bits (167), Expect = 1e-17
Identities = 25/43 (58%), Positives = 31/43 (72%)
Query: 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQ 43
+EDLA ++TQ I+RI +L G LTGVIDDRGKFIYI+
Sbjct: 24 LEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66
>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 84
Score = 29.0 bits (65), Expect = 0.029
Identities = 9/51 (17%), Positives = 19/51 (37%)
Query: 1 MEDLAALFRMKTQSVIDRIVELQKTGALTGVIDDRGKFIYISQEELNSVAT 51
E+L AL + ++ G + G ID ++ E + ++
Sbjct: 33 FEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREASGPSS 83
>d1fj2a_ c.69.1.14 (A:) Acyl protein thioesterase 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 229
Score = 26.1 bits (56), Expect = 0.67
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 40 YISQEELNSVATFIKQR 56
Q+E+ V FI +
Sbjct: 209 SSCQQEMMDVKQFIDKL 225
>d1auoa_ c.69.1.14 (A:) Carboxylesterase {Pseudomonas fluorescens
[TaxId: 294]}
Length = 218
Score = 25.4 bits (54), Expect = 1.1
Identities = 2/16 (12%), Positives = 9/16 (56%)
Query: 41 ISQEELNSVATFIKQR 56
+ +E++ + ++ R
Sbjct: 201 VLPQEIHDIGAWLAAR 216
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 241
Score = 25.4 bits (55), Expect = 1.2
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 30 GVIDDRGKFIYISQEELNSVATFIKQRGREE 60
V+ + +S EE+N T I+Q +E+
Sbjct: 211 TVVKPDSDIVALSSEEINQYVTQIEQEKQEQ 241
>d1jbob_ a.1.1.3 (B:) Phycocyanin beta subunit {Synechococcus
elongatus [TaxId: 32046]}
Length = 172
Score = 23.7 bits (51), Expect = 4.3
Identities = 8/45 (17%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 27 ALTGVI---DDRGKFIYISQEELNSVATFIKQRGREELNSVATFI 68
A V+ D RG+ +++ + ++++ + + G + L++V
Sbjct: 4 AFAKVVAQADARGE--FLTNAQFDALSNLV-KEGNKRLDAVNRIT 45
>d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit,
PAPL {Vaccinia virus [TaxId: 10245]}
Length = 468
Score = 23.6 bits (51), Expect = 4.9
Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 11/78 (14%)
Query: 19 IVELQKTGALT-----GVIDDRGKFIYISQEELNSVATFIKQRGREELNS--VATFIKQK 71
I+ELQ T GV+ + + S+ N T +++ R+ LNS VA K K
Sbjct: 86 IIELQSVLVTTYTDILGVLTIKAPNVISSKISYN--VTSMEELARDMLNSMNVAVIDKAK 143
Query: 72 --GRVSVSELVENSNQLV 87
GR +VS LV+N N+L+
Sbjct: 144 VMGRHNVSSLVKNVNKLM 161
>d1jboa_ a.1.1.3 (A:) Phycocyanin alpha subunit {Synechococcus
elongatus [TaxId: 32046]}
Length = 162
Score = 23.3 bits (50), Expect = 5.5
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 5/32 (15%)
Query: 27 ALTGVI---DDRGKFIYISQEELNSVATFIKQ 55
+T I D +G+ ++S EL +V K+
Sbjct: 4 PITEAIAAADTQGR--FLSNTELQAVDGRFKR 33
>d1xg0c_ a.1.1.3 (C:) Phycoerythrin beta subunit {Cryptophyte
(Rhodomonas sp. CS24) [TaxId: 79257]}
Length = 175
Score = 23.3 bits (50), Expect = 6.3
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 27 ALTGVI---DDRGKFIYISQEELNSVATFIKQ 55
A + V+ D + Y+ +L ++ FI +
Sbjct: 2 AFSRVVTNADSKAA--YVGGADLQALKKFISE 31
>d1b8da_ a.1.1.3 (A:) Phycoerythrin alpha subunit {Red alga
(Griffithsia monilis) [TaxId: 42003]}
Length = 164
Score = 22.9 bits (49), Expect = 6.8
Identities = 8/32 (25%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 27 ALTGVI---DDRGKFIYISQEELNSVATFIKQ 55
+T I D G+ + S +L S+ I++
Sbjct: 4 VITTTISAADAAGR--FPSSSDLESIQGNIQR 33
>d1allb_ a.1.1.3 (B:) Allophycocyanin beta subunit {Spirulina
platensis [TaxId: 118562]}
Length = 161
Score = 22.9 bits (49), Expect = 7.3
Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 7/67 (10%)
Query: 27 ALTGVI---DDRGKFIYISQEELNSVATFIKQRGREELNSVATFIKQKGRVSVSELVENS 83
A+T VI D +GK Y+ + + + G + + T + V E V S
Sbjct: 4 AITSVINSSDVQGK--YLDASAIQKLKAYF-ATGELRVRAATTISANAANI-VKEAVAKS 59
Query: 84 NQLVTLI 90
+
Sbjct: 60 LLYSDVT 66
>d1vqow1 d.59.1.1 (W:1-154) Archaeal L30 (L30a) {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 154
Score = 22.8 bits (49), Expect = 7.6
Identities = 8/70 (11%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 16 IDRIVELQKTGALTGVIDDRGKFIYISQEELNSVATFIKQRGREELNSV----ATFIKQK 71
++ + +T A G++ F+ + ++ T + R +
Sbjct: 29 VNHCTLVPETDAYRGMVAKVNDFVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHT 88
Query: 72 GRVSVSELVE 81
+S L
Sbjct: 89 DYDDISGLAF 98
>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus
amyloliquefaciens [TaxId: 1390]}
Length = 353
Score = 23.1 bits (49), Expect = 9.3
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 31 VIDDRGKFIYISQEE 45
DD +YI++E+
Sbjct: 186 AADDEYGSLYIAEED 200
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.132 0.338
Gapped
Lambda K H
0.267 0.0646 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 310,502
Number of extensions: 12064
Number of successful extensions: 55
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 22
Length of query: 96
Length of database: 2,407,596
Length adjustment: 59
Effective length of query: 37
Effective length of database: 1,597,526
Effective search space: 59108462
Effective search space used: 59108462
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)