BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11009
(863 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 195 bits (496), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 100/190 (52%), Positives = 133/190 (70%), Gaps = 5/190 (2%)
Query: 673 DKPVMQERRFESYGCDND-LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWM 731
+K + QE ++ G DN L L ++ + PN++W+D+A L AK L+EAV+LP+
Sbjct: 14 NKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKF 73
Query: 732 PEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVR 791
P FKG R+P G+L+ GPPGTGK+ LAKAVATE +TFF+V SS L SK+ GESEKLV+
Sbjct: 74 PHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVK 133
Query: 792 LLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVM 851
LF MAR PS IFID++D+L RG E E EASRR+K+ELLVQM+G+ + S+ V+
Sbjct: 134 QLFAMARENKPSIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVG---NDSQGVL 189
Query: 852 VLAATNFPWE 861
VL ATN PW+
Sbjct: 190 VLGATNIPWQ 199
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 7/79 (8%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAV----DLTHIASQLDGY 267
IPW +D A+RRR E+RIYIPLP A R + +IN+ + P+V D + + +GY
Sbjct: 196 IPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT---PSVLTKEDYRTLGAMTEGY 252
Query: 268 SGADITNVCRDASMMSMRR 286
SG+DI V +DA M +R+
Sbjct: 253 SGSDIAVVVKDALMQPIRK 271
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 94/168 (55%), Positives = 123/168 (73%), Gaps = 4/168 (2%)
Query: 694 MLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGT 753
++ R + + PN++W+D+A L AK L+EAV+LP+ P FKG R+P G+L+ GPPGT
Sbjct: 12 LVPRGSLSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGT 71
Query: 754 GKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSL 813
GK+ LAKAVATE +TFF+V SS L SK+ GESEKLV+ LF MAR PS IFIDE+D+L
Sbjct: 72 GKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDAL 131
Query: 814 CSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
RG E E EASRR+K+ELLVQM+G+ + S+ V+VL ATN PW+
Sbjct: 132 TGTRG-EGESEASRRIKTELLVQMNGVG---NDSQGVLVLGATNIPWQ 175
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 7/79 (8%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAV----DLTHIASQLDGY 267
IPW +D A+RRR E+RIYIPLP A R + +IN+ + P V D + + +GY
Sbjct: 172 IPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT---PCVLTKEDYRTLGAMTEGY 228
Query: 268 SGADITNVCRDASMMSMRR 286
SG+DI V +DA M +R+
Sbjct: 229 SGSDIAVVVKDALMQPIRK 247
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 97/177 (54%), Positives = 126/177 (71%), Gaps = 5/177 (2%)
Query: 686 GCDND-LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKG 744
G DN L L ++ + PN++W+D+A L AK L+EAV+LP+ P FKG R+P G
Sbjct: 12 GEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSG 71
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
+L+ GPPGTGK+ LAKAVATE +TFF+V SS L SK+ GESEKLV+ LF MAR PS
Sbjct: 72 ILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSI 131
Query: 805 IFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
IFID++D+L RG E E EASRR+K+ELLVQM+G+ + S+ V+VL ATN PW+
Sbjct: 132 IFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGVG---NDSQGVLVLGATNIPWQ 184
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 7/79 (8%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAV----DLTHIASQLDGY 267
IPW +D A+RRR E+RIYIPLP A R + +IN+ + P V D + + +GY
Sbjct: 181 IPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT---PCVLTKEDYRTLGAMTEGY 237
Query: 268 SGADITNVCRDASMMSMRR 286
SG+DI V +DA M +R+
Sbjct: 238 SGSDIAVVVKDALMQPIRK 256
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 92/163 (56%), Positives = 121/163 (74%), Gaps = 4/163 (2%)
Query: 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTML 758
++ + PN++W+D+A L AK L+EAV+LP+ P FKG R+P G+L+ GPPGTGK+ L
Sbjct: 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYL 67
Query: 759 AKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRG 818
AKAVATE +TFF+V SS L SK+ GESEKLV+ LF MAR PS IFID++D+L RG
Sbjct: 68 AKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG 127
Query: 819 SESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
E E EASRR+K+ELLVQM+G+ + S+ V+VL ATN PW+
Sbjct: 128 -EGESEASRRIKTELLVQMNGVG---NDSQGVLVLGATNIPWQ 166
Score = 70.9 bits (172), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%), Gaps = 7/79 (8%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAV----DLTHIASQLDGY 267
IPW +D A+RRR E+RIYIPLP A R + +IN+ + P V D + + +GY
Sbjct: 163 IPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDT---PCVLTKEDYRTLGAMTEGY 219
Query: 268 SGADITNVCRDASMMSMRR 286
SG+DI V +DA M +R+
Sbjct: 220 SGSDIAVVVKDALMQPIRK 238
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 188 bits (478), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 121/171 (70%), Gaps = 5/171 (2%)
Query: 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGP 750
L L+ +V + PN++W D+A L AK L+EAV+LP+ P F G R PW+G+L+ GP
Sbjct: 116 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGP 175
Query: 751 PGTGKTMLAKAVATEC-GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDE 809
PGTGK+ LAKAVATE +TFF++ SS L SK+ GESEKLV+ LF++AR PS IFIDE
Sbjct: 176 PGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDE 235
Query: 810 IDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860
IDSLC R SE+E EA+RR+K+E LVQM G+ D ++VL ATN PW
Sbjct: 236 IDSLCGSR-SENESEAARRIKTEFLVQMQGVGVDNDG---ILVLGATNIPW 282
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGA 270
IPW +D A+RRR EKRIYIPLP R A+ +++L + D + + DGYSGA
Sbjct: 280 IPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGA 339
Query: 271 DITNVCRDASMMSMRR 286
DI+ + RDA M +R+
Sbjct: 340 DISIIVRDALMQPVRK 355
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 186 bits (471), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/163 (56%), Positives = 118/163 (72%), Gaps = 5/163 (3%)
Query: 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTML 758
+V + PN++W D+A L AK L+EAV+LP+ P F G R PW+G+L+ GPPGTGK+ L
Sbjct: 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 61
Query: 759 AKAVATEC-GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRR 817
AKAVATE +TFF++ SS L SK+ GESEKLV+ LF++AR PS IFIDEIDSLC R
Sbjct: 62 AKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSR 121
Query: 818 GSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860
SE+E EA+RR+K+E LVQM G+ D ++VL ATN PW
Sbjct: 122 -SENESEAARRIKTEFLVQMQGVGVDNDG---ILVLGATNIPW 160
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 47/76 (61%), Gaps = 1/76 (1%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGA 270
IPW +D A+RRR EKRIYIPLP R A+ K++L + D + + DGYSGA
Sbjct: 158 IPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGA 217
Query: 271 DITNVCRDASMMSMRR 286
DI+ + RDA M +R+
Sbjct: 218 DISIIVRDALMQPVRK 233
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 184 bits (466), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 91/176 (51%), Positives = 122/176 (69%), Gaps = 5/176 (2%)
Query: 687 CDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVL 746
D++L ++ ++V +++DDIA AK+ L+E V+LP PE F G+R P +G+L
Sbjct: 93 VDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLL 152
Query: 747 MVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIF 806
+ GPPG GKTMLAKAVA E TFFN+ +++LTSKY GE EKLVR LF +AR PS IF
Sbjct: 153 LFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIF 212
Query: 807 IDEIDS-LCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
ID++DS LC RR E EH+ASRR+K+E L++ DG+ SA D V+V+ ATN P E
Sbjct: 213 IDQVDSLLCERR--EGEHDASRRLKTEFLIEFDGVQSAGDDR--VLVMGATNRPQE 264
Score = 62.8 bits (151), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 6/119 (5%)
Query: 213 PWDIDEALRRRLEKRIYIPLPSKAGR-EALLKINLKEVKVDPAVDLTHIASQLDGYSGAD 271
P ++DEA+ RR KR+Y+ LP++ R L + K+ +L +A DGYSG+D
Sbjct: 262 PQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSD 321
Query: 272 ITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLE 330
+T + +DA++ +R L PEQ++ + E+ + DF E+L + +SV+ + LE
Sbjct: 322 LTALAKDAALGPIRE----LKPEQVKNMSASEMR-NIRLSDFTESLKKIKRSVSPQTLE 375
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 83/171 (48%), Positives = 124/171 (72%), Gaps = 3/171 (1%)
Query: 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGP 750
++E++ +++ P + W+DIA + AK ++E VV PM P+ F G+R P KG+L+ GP
Sbjct: 66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGP 125
Query: 751 PGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEI 810
PGTGKT++ K +A++ G TFF++ +S+LTSK+ GE EK+VR LF +AR P+ IFIDEI
Sbjct: 126 PGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEI 185
Query: 811 DSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
DSL S+RG + EHE+SRR+K+E LVQ+DG +++ S ++V+ ATN P E
Sbjct: 186 DSLLSQRG-DGEHESSRRIKTEFLVQLDGATTS--SEDRILVVGATNRPQE 233
Score = 80.5 bits (197), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/124 (40%), Positives = 71/124 (57%), Gaps = 16/124 (12%)
Query: 213 PWDIDEALRRRLEKRIYIPLPSKAGREALLKINL--KEVKVDPAVDLTHIASQLDGYSGA 270
P +IDEA RRRL KR+YIPLP + R+ ++ INL KE ++ I Q D +SGA
Sbjct: 231 PQEIDEAARRRLVKRLYIPLPEASARKQIV-INLMSKEQCCLSEEEIEQIVQQSDAFSGA 289
Query: 271 DITNVCRDASMMSMRR----KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAR 326
D+T +CR+AS+ +R I +TP+Q+R P++ DFE A SV+
Sbjct: 290 DMTQLCREASLGPIRSLQTADIATITPDQVR---------PIAYIDFENAFRTVRPSVSP 340
Query: 327 EDLE 330
+DLE
Sbjct: 341 KDLE 344
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 94/171 (54%), Positives = 121/171 (70%), Gaps = 2/171 (1%)
Query: 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGP 750
LV+++ ++V+ + W DIA AK+ L+E V+LP PE F G+R P KG+L+ GP
Sbjct: 3 LVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGP 62
Query: 751 PGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEI 810
PG GKT+LA+AVATEC TF N+ +++LTSKY G+ EKLVR LF +AR PS IFIDE+
Sbjct: 63 PGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEV 122
Query: 811 DSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
DSL S R S SEHEASRR+K+E LV+ DGL D ++V VLAATN P E
Sbjct: 123 DSLLSER-SSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV-VLAATNRPQE 171
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 10/120 (8%)
Query: 213 PWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVD---LTHIASQLDGYSG 269
P ++DEA RR KR+Y+ LP + RE LL L+ K +D L +A DGYSG
Sbjct: 169 PQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ--KQGSPLDTEALRRLAKITDGYSG 226
Query: 270 ADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDL 329
+D+T + +DA++ +R L EQ++ + + ++++DF +L R +SVA + L
Sbjct: 227 SDLTALAKDAALEPIRE----LNVEQVKCLDISAMR-AITEQDFHSSLKRIRRSVAPQSL 281
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 74/158 (46%), Positives = 100/158 (63%), Gaps = 8/158 (5%)
Query: 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTMLAKA 761
PN+ W DI L D + L A++ P+ P+ FK G+ P GVL+ GPPG GKT+LAKA
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLAKA 63
Query: 762 VATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES 821
VA E G F +V L + Y GESE+ VR +F+ A+ AP IF DE+D+LC RR S+
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRR-SDR 122
Query: 822 EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
E AS RV ++LL +MDGL ++ + V ++AATN P
Sbjct: 123 ETGASVRVVNQLLTEMDGL----EARQQVFIMAATNRP 156
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 15/124 (12%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKI---NLKEVKVDPAVDLTHIASQL--D 265
P ID A+ R RL+K +++ LP A R A+LK N + +D V+L IA L D
Sbjct: 156 PDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCD 215
Query: 266 GYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIP-KEELDLPVSQRDFEEALARCNKSV 324
Y+GAD++ + R+AS+ ++R+ E RQ E+ +L VS + FEEA + S+
Sbjct: 216 CYTGADLSALVREASICALRQ-------EMARQKSGNEKGELKVSHKHFEEAFKKVRSSI 268
Query: 325 ARED 328
+++D
Sbjct: 269 SKKD 272
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 125 bits (313), Expect = 1e-28, Method: Composition-based stats.
Identities = 73/167 (43%), Positives = 101/167 (60%), Gaps = 15/167 (8%)
Query: 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTM 757
V + PN+R++DI L + + E V LP+ PE F+ GI P KG+L+ GPPGTGKT+
Sbjct: 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPP-KGILLYGPPGTGKTL 66
Query: 758 LAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRR 817
LAKAVATE TF V S L K+ GE LV+ +F++A+ APS IFIDEID++ ++R
Sbjct: 67 LAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKR 126
Query: 818 -----GSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
G + E +R +LL +MDG + D V ++ ATN P
Sbjct: 127 TDALTGGDRE---VQRTLMQLLAEMDGFDARGD----VKIIGATNRP 166
Score = 45.8 bits (107), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D A+ R R ++ I +P P + GR +LKI+ +++ + V+L IA +G GA
Sbjct: 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGA 225
Query: 271 DITNVCRDASMMSMR 285
++ +C +A M ++R
Sbjct: 226 ELKAICTEAGMNAIR 240
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/163 (44%), Positives = 100/163 (61%), Gaps = 9/163 (5%)
Query: 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKT 756
MV+K P+ +D + LT + ++E + LP+ PE F+ GI +P KGV++ GPPGTGKT
Sbjct: 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPPGTGKT 196
Query: 757 MLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSR 816
+LA+AVA F V + L KY GE ++VR LF MAR +APS IF+DEIDS+ S
Sbjct: 197 LLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGST 256
Query: 817 R--GSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857
R GS +R ELL Q+DG ++SK + ++ ATN
Sbjct: 257 RVEGSGGGDSEVQRTMLELLNQLDGF----ETSKNIKIIMATN 295
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 52/81 (64%), Gaps = 2/81 (2%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADIT 273
+D AL R R++++I P PS A R +L+I+ +++ + ++L +A +++G SGAD+
Sbjct: 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVK 359
Query: 274 NVCRDASMMSMRRKIIGLTPE 294
VC +A M ++R + I +T E
Sbjct: 360 GVCTEAGMYALRERRIHVTQE 380
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPE-FFKGIRRPWKGVLMVGPPGTGK 755
R+ V + P + W+DI L D KR L+E V P+ P+ F K P KGVL GPPG GK
Sbjct: 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 524
Query: 756 TMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815
T+LAKA+A EC F ++ L + + GESE VR +F+ AR AP +F DE+DS+
Sbjct: 525 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584
Query: 816 RR--GSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
R A+ RV +++L +MDG+S + K V ++ ATN P
Sbjct: 585 ARGGNIGDGGGAADRVINQILTEMDGMS----TKKNVFIIGATNRP 626
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVAT 764
+ +DDI ++E V LP+ P FK I +P +G+L+ GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 765 ECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHE 824
E G FF + + SK GESE +R FE A AP+ IFIDE+D++ +R ++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 825 ASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
RR+ S+LL MDGL V+V+AATN P
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH----VIVMAATNRP 350
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 22/174 (12%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID ALRR R ++ + I +P GR +L+I+ K +K+ VDL +A++ G+ GA
Sbjct: 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELD-LPVSQRDFEEALARCNKSVARE-- 327
D+ +C +A++ ++R+K + L + I E ++ L V+ DF AL++ N S RE
Sbjct: 410 DLAALCSEAALQAIRKK-MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETV 468
Query: 328 -DLENITVERIAPHMSTIGKKL-------------YLKFQKTPIV-TLATGPVG 366
++ +T E I + + ++L +LKF TP L GP G
Sbjct: 469 VEVPQVTWEDIG-GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 10/127 (7%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID A+ R RL++ IYIPLP + R A+LK NL++ V VDL +A +G+SGA
Sbjct: 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 685
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQ------IPKEELD-LPVSQRD-FEEALARCNK 322
D+T +C+ A +++R I + + + EE D +P +RD FEEA+ +
Sbjct: 686 DLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745
Query: 323 SVAREDL 329
SV+ D+
Sbjct: 746 SVSDNDI 752
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 122 bits (307), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPE-FFKGIRRPWKGVLMVGPPGTGK 755
R+ V + P + W+DI L D KR L+E V P+ P+ F K P KGVL GPPG GK
Sbjct: 465 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 524
Query: 756 TMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815
T+LAKA+A EC F ++ L + + GESE VR +F+ AR AP +F DE+DS+
Sbjct: 525 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 584
Query: 816 RR--GSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
R A+ RV +++L +MDG+S + K V ++ ATN P
Sbjct: 585 ARGGNIGDGGGAADRVINQILTEMDGMS----TKKNVFIIGATNRP 626
Score = 115 bits (289), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVAT 764
+ +DD+ ++E V LP+ P FK I +P +G+L+ GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 765 ECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHE 824
E G FF + + SK GESE +R FE A AP+ IFIDE+D++ +R ++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 825 ASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
RR+ S+LL MDGL V+V+AATN P
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH----VIVMAATNRP 350
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 54/174 (31%), Positives = 90/174 (51%), Gaps = 22/174 (12%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID ALRR R ++ + I +P GR +L+I+ K +K+ VDL +A++ G+ GA
Sbjct: 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELD-LPVSQRDFEEALARCNKSVARE-- 327
D+ +C +A++ ++R+K + L + I E ++ L V+ DF AL++ N S RE
Sbjct: 410 DLAALCSEAALQAIRKK-MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETV 468
Query: 328 -DLENITVERIAPHMSTIGKKL-------------YLKFQKTPIV-TLATGPVG 366
++ +T E I + + ++L +LKF TP L GP G
Sbjct: 469 VEVPQVTWEDIG-GLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPG 521
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 10/127 (7%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID A+ R RL++ IYIPLP + R A+LK NL++ V VDL +A +G+SGA
Sbjct: 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 685
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQ------IPKEELD-LPVSQRD-FEEALARCNK 322
D+T +C+ A +++R I + + + EE D +P +RD FEEA+ +
Sbjct: 686 DLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745
Query: 323 SVAREDL 329
SV+ D+
Sbjct: 746 SVSDNDI 752
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 122 bits (305), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 96/166 (57%), Gaps = 7/166 (4%)
Query: 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPE-FFKGIRRPWKGVLMVGPPGTGK 755
R+ V + P + W+DI L D KR L+E V P+ P+ F K P KGVL GPPG GK
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGK 62
Query: 756 TMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815
T+LAKA+A EC F ++ L + + GESE VR +F+ AR AP +F DE+DS+
Sbjct: 63 TLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAK 122
Query: 816 RR--GSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
R A+ RV +++L +MDG+S + K V ++ ATN P
Sbjct: 123 ARGGNIGDGGGAADRVINQILTEMDGMS----TKKNVFIIGATNRP 164
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 46/70 (65%), Gaps = 2/70 (2%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADIT 273
ID A+ R RL++ IYIPLP + R A+LK NL++ V VDL +A +G+SGAD+T
Sbjct: 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT 226
Query: 274 NVCRDASMMS 283
+C+ A ++
Sbjct: 227 EICQRACKLA 236
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 70/158 (44%), Positives = 95/158 (60%), Gaps = 9/158 (5%)
Query: 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTMLAKAVA 763
I +D I LT+ R L E + LP+ PE F+ GI+ P KGVL+ GPPGTGKT+LAKAVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK-PPKGVLLYGPPGTGKTLLAKAVA 236
Query: 764 TECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--S 821
G F +S + KY GES +++R +F A+ + P IF+DE+D++ RR SE S
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 822 EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
+R ELL QMDG + +K++M ATN P
Sbjct: 297 ADREIQRTLMELLTQMDGFDNL-GQTKIIM---ATNRP 330
Score = 53.1 bits (126), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D AL R RL++++ IPLP++AGR + KI+ +VK D DG++GA
Sbjct: 330 PDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGA 389
Query: 271 DITNVCRDASMMSMR 285
DI N +A ++R
Sbjct: 390 DIRNCATEAGFFAIR 404
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 119 bits (298), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 69/162 (42%), Positives = 94/162 (58%), Gaps = 13/162 (8%)
Query: 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAK 760
+ P++ + D+ L K+ + EAV LP+ + ++ I P +GVL+ GPPGTGKTML K
Sbjct: 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVK 224
Query: 761 AVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRR--- 817
AVA F V S KY GE ++VR +F +AR APS IFIDE+DS+ ++R
Sbjct: 225 AVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDA 284
Query: 818 --GSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857
GS+ E + R+ ELL QMDG D S V V+ ATN
Sbjct: 285 QTGSDREVQ---RILIELLTQMDGF----DQSTNVKVIMATN 319
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 119 bits (297), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 73/163 (44%), Positives = 95/163 (58%), Gaps = 11/163 (6%)
Query: 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTM 757
V + P + D+ L L EA+VLPM + FK GIR P KG LM GPPGTGKT+
Sbjct: 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTL 230
Query: 758 LAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRR 817
LA+A A + TF + + L Y GE KLVR F +A+ AP+ IFIDE+D++ ++R
Sbjct: 231 LARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR 290
Query: 818 GSESEHEASRRVKS---ELLVQMDGLSSAEDSSKVVMVLAATN 857
+SE R V+ ELL Q+DG SS + V VLAATN
Sbjct: 291 -FDSEKSGDREVQRTMLELLNQLDGFSSDD----RVKVLAATN 328
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 44/72 (61%), Gaps = 2/72 (2%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADIT 273
+D AL R RL+++I PLPS+ R +L+I+ +++ D ++ +A D ++GA +
Sbjct: 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLK 392
Query: 274 NVCRDASMMSMR 285
V +A M+++R
Sbjct: 393 AVTVEAGMIALR 404
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 117 bits (292), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVAT 764
+ +DDI ++E V LP+ P FK I +P +G+L+ GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 765 ECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHE 824
E G FF + + SK GESE +R FE A AP+ IFIDE+D++ +R ++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 825 ASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
RR+ S+LL MDGL V+V+AATN P
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH----VIVMAATNRP 350
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID ALRR R ++ + I +P GR +L+I+ K +K+ VDL +A++ G+ GA
Sbjct: 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELD-LPVSQRDFEEALARCNKSVARE 327
D+ +C +A++ ++R+K + L + I E ++ L V+ DF AL++ N S RE
Sbjct: 410 DLAALCSEAALQAIRKK-MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVAT 764
+ +DDI ++E V LP+ P FK I +P +G+L+ GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 765 ECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHE 824
E G FF + + SK GESE +R FE A AP+ IFIDE+D++ +R ++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 825 ASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
RR+ S+LL MDGL V+V+AATN P
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH----VIVMAATNRP 350
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID ALRR R ++ + I +P GR +L+I+ K +K+ VDL +A++ G+ GA
Sbjct: 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELD-LPVSQRDFEEALARCNKSVARE 327
D+ +C +A++ ++R+K + L + I E ++ L V+ DF AL++ N S RE
Sbjct: 410 DLAALCSEAALQAIRKK-MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 117 bits (292), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/155 (42%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVAT 764
+ +DDI ++E V LP+ P FK I +P +G+L+ GPPGTGKT++A+AVA
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 765 ECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHE 824
E G FF + + SK GESE +R FE A AP+ IFIDE+D++ +R ++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 825 ASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
RR+ S+LL MDGL V+V+AATN P
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH----VIVMAATNRP 350
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID ALRR R ++ + I +P GR +L+I+ K +K+ VDL +A++ G+ GA
Sbjct: 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELD-LPVSQRDFEEALARCNKSVARE 327
D+ +C +A++ ++R+K + L + I E ++ L V+ DF AL++ N S RE
Sbjct: 410 DLAALCSEAALQAIRKK-MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 116 bits (291), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 65/155 (41%), Positives = 92/155 (59%), Gaps = 6/155 (3%)
Query: 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVAT 764
+ +DD+ ++E V LP+ P FK I +P +G+L+ GPPGTGKT++A+AVA
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 765 ECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHE 824
E G FF + + SK GESE +R FE A AP+ IFIDE+D++ +R ++ E
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKR-EKTHGE 319
Query: 825 ASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
RR+ S+LL MDGL V+V+AATN P
Sbjct: 320 VERRIVSQLLTLMDGLKQRAH----VIVMAATNRP 350
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/110 (33%), Positives = 65/110 (59%), Gaps = 4/110 (3%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID ALRR R ++ + I +P GR +L+I+ K +K+ VDL +A++ G+ GA
Sbjct: 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELD-LPVSQRDFEEALAR 319
D+ +C +A++ ++R+K + L + I E ++ L V+ DF AL++
Sbjct: 410 DLAALCSEAALQAIRKK-MDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 458
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 112 bits (280), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 68/165 (41%), Positives = 91/165 (55%), Gaps = 11/165 (6%)
Query: 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTM 757
V++ P++ + D+ D L E V LP+ PE F GI P KG+L+ GPPGTGKT+
Sbjct: 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPP-KGILLYGPPGTGKTL 258
Query: 758 LAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRR 817
A+AVA TF V S L KY GE ++VR LFEMAR IF DEID++ R
Sbjct: 259 CARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGAR 318
Query: 818 ---GSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
G+ ++E R + EL+ Q+DG D + V+ ATN P
Sbjct: 319 FDDGAGGDNEVQRTM-LELITQLDGF----DPRGNIKVMFATNRP 358
Score = 38.5 bits (88), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 42/77 (54%), Gaps = 2/77 (2%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D AL R R+++++ LP GR + +I+ K + V+ + I+ +GA
Sbjct: 358 PNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGA 417
Query: 271 DITNVCRDASMMSMRRK 287
++ +VC +A M ++R +
Sbjct: 418 ELRSVCTEAGMFAIRAR 434
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 67/163 (41%), Positives = 96/163 (58%), Gaps = 11/163 (6%)
Query: 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTM 757
+ K+P + DI L + ++E+V LP+ PE ++ GI+ P KGV++ G PGTGKT+
Sbjct: 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK-PPKGVILYGAPGTGKTL 231
Query: 758 LAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRR 817
LAKAVA + TF + S L KY G+ +L R +F++A APS +FIDEID++ ++R
Sbjct: 232 LAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKR 291
Query: 818 ---GSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857
S E E R + ELL Q+DG D V V+ ATN
Sbjct: 292 YDSNSGGEREIQRTM-LELLNQLDGFDDRGD----VKVIMATN 329
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 105 bits (263), Expect = 9e-23, Method: Composition-based stats.
Identities = 70/163 (42%), Positives = 96/163 (58%), Gaps = 10/163 (6%)
Query: 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTMLA 759
+ PN+R+ D+A +AK + E V + PE + G + P KGVL+VGPPGTGKT+LA
Sbjct: 4 EKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIP-KGVLLVGPPGTGKTLLA 61
Query: 760 KAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRR-- 817
KAVA E FF++ S+ + G VR LFE A+ APS IFIDEID++ R
Sbjct: 62 KAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAA 121
Query: 818 -GSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
G S ++ + ++LL +MDG S + V+VLAATN P
Sbjct: 122 GGVVSGNDEREQTLNQLLAEMDGFGS---ENAPVIVLAATNRP 161
Score = 46.2 bits (108), Expect = 8e-05, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D AL R R ++++ + P GR +LK+++K VK+ V+L +A G +GA
Sbjct: 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGA 220
Query: 271 DITNVCRDASMMSMR 285
D+ N+ +A++++ R
Sbjct: 221 DLANIINEAALLAGR 235
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 64/167 (38%), Positives = 91/167 (54%), Gaps = 22/167 (13%)
Query: 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--------GIRRPWKGVLMVGPPGTG 754
N + + D+ +A L+E V EF K G R P KG+L+VGPPGTG
Sbjct: 10 NKRVTFKDVGGAEEAIEELKEVV-------EFLKDPSKFNRIGARMP-KGILLVGPPGTG 61
Query: 755 KTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLC 814
KT+LA+AVA E FF++ S + G VR LF A+ +AP +FIDEID++
Sbjct: 62 KTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVG 121
Query: 815 SRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
RG+ H+ + ++LLV+MDG DS + ++V+AATN P
Sbjct: 122 RHRGAGLGGGHDEREQTLNQLLVEMDGF----DSKEGIIVMAATNRP 164
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 19/119 (15%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D AL R R +K+I + P GR+ +L+I+ + + V+L IA + G+ GA
Sbjct: 164 PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGA 223
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDL 329
D+ N+ +A++++ R E ++ +DFEEA+ R AR+ L
Sbjct: 224 DLENLVNEAALLAAR-----------------EGRDKITMKDFEEAIDRVIAGPARKSL 265
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 63/167 (37%), Positives = 90/167 (53%), Gaps = 22/167 (13%)
Query: 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--------GIRRPWKGVLMVGPPGTG 754
N + + D+ +A L+E V EF K G R P KG+L+VGPPGTG
Sbjct: 10 NKRVTFKDVGGAEEAIEELKEVV-------EFLKDPSKFNRIGARMP-KGILLVGPPGTG 61
Query: 755 KTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLC 814
T+LA+AVA E FF++ S + G VR LF A+ +AP +FIDEID++
Sbjct: 62 ATLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVG 121
Query: 815 SRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
RG+ H+ + ++LLV+MDG DS + ++V+AATN P
Sbjct: 122 RHRGAGLGGGHDEREQTLNQLLVEMDGF----DSKEGIIVMAATNRP 164
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 59/119 (49%), Gaps = 19/119 (15%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D AL R R +K+I + P GR+ +L+I+ + + V+L IA + G+ GA
Sbjct: 164 PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGA 223
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDL 329
D+ N+ +A++++ R E ++ +DFEEA+ R AR+ L
Sbjct: 224 DLENLVNEAALLAAR-----------------EGRDKITMKDFEEAIDRVIAGPARKSL 265
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats.
Identities = 66/170 (38%), Positives = 94/170 (55%), Gaps = 14/170 (8%)
Query: 694 MLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPP 751
ML D ++ + D+A +AK + E V + P F+ G + P KGVLMVGPP
Sbjct: 1 MLTEDQIKTT----FADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIP-KGVLMVGPP 54
Query: 752 GTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEID 811
GTGKT+LAKA+A E FF + S + G VR +FE A+ AP IFIDEID
Sbjct: 55 GTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEID 114
Query: 812 SLCSRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
++ +RG+ H+ + +++LV+MDG E ++V+AATN P
Sbjct: 115 AVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG----IIVIAATNRP 160
Score = 54.7 bits (130), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 2/72 (2%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADIT 273
+D AL R R ++++ + LP GRE +LK++++ V + P +D IA G+SGAD+
Sbjct: 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 222
Query: 274 NVCRDASMMSMR 285
N+ +A++ + R
Sbjct: 223 NLVNEAALFAAR 234
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 737 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEM 796
G R P KGVL+VGPPG GKT LA+AVA E F S + G VR LFE
Sbjct: 60 GARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFET 118
Query: 797 ARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKS--ELLVQMDGLSSAEDSSKVVMVLA 854
A+ +AP +FIDEID++ +RGS R ++ +LLV+MDG + ++V+A
Sbjct: 119 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF----EKDTAIVVMA 174
Query: 855 ATNFP 859
ATN P
Sbjct: 175 ATNRP 179
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D AL R R +++I I P GRE +L+I+ + + VDL +A + G+ GA
Sbjct: 179 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 238
Query: 271 D 271
D
Sbjct: 239 D 239
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 71/125 (56%), Gaps = 7/125 (5%)
Query: 737 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEM 796
G R P KGVL+VGPPG GKT LA+AVA E F S + G VR LFE
Sbjct: 69 GARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFET 127
Query: 797 ARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKS--ELLVQMDGLSSAEDSSKVVMVLA 854
A+ +AP +FIDEID++ +RGS R ++ +LLV+MDG + ++V+A
Sbjct: 128 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF----EKDTAIVVMA 183
Query: 855 ATNFP 859
ATN P
Sbjct: 184 ATNRP 188
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D AL R R +++I I P GRE +L+I+ + + VDL +A + G+ GA
Sbjct: 188 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 247
Query: 271 D 271
D
Sbjct: 248 D 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 91.7 bits (226), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 737 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEM 796
G R P KGVL+VGPPG GKT LA+AVA E F S + G VR LFE
Sbjct: 45 GARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFET 103
Query: 797 ARFYAPSTIFIDEIDSLCSRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLA 854
A+ +AP +FIDEID++ +RGS ++ + ++LLV+MDG + ++V+A
Sbjct: 104 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF----EKDTAIVVMA 159
Query: 855 ATNFP 859
ATN P
Sbjct: 160 ATNRP 164
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D AL R R +++I I P GRE +L+I+ + + VDL +A + G+ GA
Sbjct: 164 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 223
Query: 271 D 271
D
Sbjct: 224 D 224
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 91.3 bits (225), Expect = 2e-18, Method: Composition-based stats.
Identities = 53/125 (42%), Positives = 72/125 (57%), Gaps = 7/125 (5%)
Query: 737 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEM 796
G R P KGVL+VGPPG GKT LA+AVA E F S + G VR LFE
Sbjct: 69 GARIP-KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFET 127
Query: 797 ARFYAPSTIFIDEIDSLCSRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLA 854
A+ +AP +FIDEID++ +RGS ++ + ++LLV+MDG + ++V+A
Sbjct: 128 AKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGF----EKDTAIVVMA 183
Query: 855 ATNFP 859
ATN P
Sbjct: 184 ATNRP 188
Score = 37.0 bits (84), Expect = 0.044, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D AL R R +++I I P GRE +L+I+ + + VDL +A + G+ GA
Sbjct: 188 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 247
Query: 271 D 271
D
Sbjct: 248 D 248
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 86.7 bits (213), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/161 (37%), Positives = 89/161 (55%), Gaps = 17/161 (10%)
Query: 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTMLAKAV 762
+ + D+A + +AK + E V + PE F G + P KG L++GPPG GKT+LAKAV
Sbjct: 2 GVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKAV 59
Query: 763 ATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRG---- 818
ATE F + + G VR LF+ AR AP ++IDEID++ +R
Sbjct: 60 ATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMS 119
Query: 819 --SESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857
S +E E + ++LLV+MDG+ + + V+VLA+TN
Sbjct: 120 GFSNTEEE---QTLNQLLVEMDGMGTTDH----VIVLASTN 153
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDL--THIASQLDGYSGAD 271
+D AL R RL++ ++I LP+ R + + +LK +K+ + +A G+SGAD
Sbjct: 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGAD 217
Query: 272 ITNVCRDASMMSMR 285
I N+C +A++ + R
Sbjct: 218 IANICNEAALHAAR 231
>pdb|2RPA|A Chain A, The Solution Structure Of N-Terminal Domain Of Microtubule
S Enzyme
Length = 78
Score = 52.8 bits (125), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 437 MTDKYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINN 496
MT I E+ +ARE +L GNYDSA +YYQ VL Q+N+ + ++D +++ W +
Sbjct: 5 MTMSLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQK-WQQVWQ 63
Query: 497 QLTKEYNEVQ 506
++ E +V+
Sbjct: 64 EINVEAKQVK 73
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 9/105 (8%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRG-ESEKLVRLLFEMARFY 800
K +LM+GP G GKT +A+ +A F V ++ T Y G E + ++R L + A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 801 APST-----IFIDEIDSLCSRRGSESEHEASRR-VKSELLVQMDG 839
+ +FIDEID +C ++G S + SR V+ +LL ++G
Sbjct: 111 IDAVEQNGIVFIDEIDKIC-KKGEYSGADVSREGVQRDLLPLVEG 154
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 42.7 bits (99), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 20/125 (16%)
Query: 709 DDIAELTDAKRLLEEA----------VVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTML 758
DD +L +A RLL+E ++ + + + K ++ P + + GPPG GKT L
Sbjct: 67 DDKLDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSLKGPI--LCLAGPPGVGKTSL 124
Query: 759 AKAVATECGTTFFNVCSSTL--TSKYRGESEKLV-----RLLFEMARFYAPSTIF-IDEI 810
AK++A G F + + S+ RG V R++ M + + +F +DEI
Sbjct: 125 AKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEI 184
Query: 811 DSLCS 815
D + S
Sbjct: 185 DKMSS 189
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/87 (28%), Positives = 45/87 (51%), Gaps = 17/87 (19%)
Query: 233 PSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLT 292
P++ R +LKI+ +++ + ++L IA + G SGA++ VC +A M ++R
Sbjct: 11 PNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALR------- 63
Query: 293 PEQIRQIPKEELDLPVSQRDFEEALAR 319
E + V+Q DFE A+A+
Sbjct: 64 ----------ERRVHVTQEDFEMAVAK 80
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 12/89 (13%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVA------------TECGTTFFNVCSSTLTSKYRGES 786
RR L+VG G GKT +A+ +A +C ++ S +KYRG+
Sbjct: 204 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 263
Query: 787 EKLVRLLFEMARFYAPSTIFIDEIDSLCS 815
EK + L + S +FIDEI ++
Sbjct: 264 EKRFKALLKQLEQDTNSILFIDEIHTIIG 292
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 733 EFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 768
E K + + VL+ GPPGTGKT LA A+A E G+
Sbjct: 68 ELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGS 103
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESE----KLVRLLF 794
R P VL+ GPP +GKT LA +A E F +CS K G SE + ++ +F
Sbjct: 60 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIF 116
Query: 795 EMARFYAPSTIFIDEIDSL 813
+ A S + +D+I+ L
Sbjct: 117 DDAYKSQLSCVVVDDIERL 135
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 733 EFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 768
E K + + VL+ GPPGTGKT LA A+A E G+
Sbjct: 54 ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESE----KLVRLLF 794
R P VL+ GPP +GKT LA +A E F +CS K G SE + ++ +F
Sbjct: 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSP---DKMIGFSETAKCQAMKKIF 117
Query: 795 EMARFYAPSTIFIDEIDSL 813
+ A S + +D+I+ L
Sbjct: 118 DDAYKSQLSCVVVDDIERL 136
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 737 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT-SKYRGES-EKLVRLLF 794
G+ +L++GP G+GKT+LA+ +A F ++TLT + Y GE E +++ L
Sbjct: 46 GVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 105
Query: 795 EMARFYAP----STIFIDEIDSLCSR 816
+ + ++ID+ID + +
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKISRK 131
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 45/86 (52%), Gaps = 6/86 (6%)
Query: 737 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT-SKYRGES-EKLVRLLF 794
G+ +L++GP G+GKT+LA+ +A F ++TLT + Y GE E +++ L
Sbjct: 46 GVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLL 105
Query: 795 EMARFYAP----STIFIDEIDSLCSR 816
+ + ++ID+ID + +
Sbjct: 106 QKCDYDVQKAQRGIVYIDQIDKISRK 131
>pdb|3KW6|A Chain A, Crystal Structure Of A Domain Of 26s Proteasome Regulatory
Subunit 8 From Homo Sapiens. Northeast Structural
Genomics Consortium Target Id Hr3102a
Length = 78
Score = 39.3 bits (90), Expect = 0.009, Method: Composition-based stats.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 17/89 (19%)
Query: 231 PLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG 290
P P++ R +LKI+ ++ + ++L IA G SGA++ VC +A ++R
Sbjct: 1 PPPNEEARLDILKIHSRKXNLTRGINLRKIAELXPGASGAEVKGVCTEAGXYALR----- 55
Query: 291 LTPEQIRQIPKEELDLPVSQRDFEEALAR 319
E + V+Q DFE A+A+
Sbjct: 56 ------------ERRVHVTQEDFEXAVAK 72
>pdb|3T15|A Chain A, Structure Of Green-Type Rubisco Activase From Tobacco
pdb|3ZW6|A Chain A, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|B Chain B, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|C Chain C, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|D Chain D, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|E Chain E, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco.
pdb|3ZW6|F Chain F, Model Of Hexameric Aaa Domain Arrangement Of Green-Type
Rubisco Activase From Tobacco
Length = 293
Score = 38.9 bits (89), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/123 (21%), Positives = 58/123 (47%), Gaps = 13/123 (10%)
Query: 749 GPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLF----EMARFYAPST 804
G G GK+ + V + G + + L S GE KL+R + E+ R
Sbjct: 43 GGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCC 102
Query: 805 IFIDEIDSLCSRRGSESEHEASRRVKSELL---------VQMDGLSSAEDSSKVVMVLAA 855
+FI+++D+ R G +++ + ++ + L VQ+ G+ + +++++V +++
Sbjct: 103 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTG 162
Query: 856 TNF 858
+F
Sbjct: 163 NDF 165
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 733 EFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRL 792
E K + P + +L+ GPPG GKT LA +A E G V S K + L
Sbjct: 29 EAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANS 87
Query: 793 LFEMARFYAPSTIFIDEIDSLCSRRGSESEHEA 825
L E +FIDEI L SR+ E + A
Sbjct: 88 LEEG------DILFIDEIHRL-SRQAEEHLYPA 113
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 36.6 bits (83), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 41/93 (44%), Gaps = 8/93 (8%)
Query: 733 EFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRL 792
E K + P + +L+ GPPG GKT LA +A E G V S K + L
Sbjct: 29 EAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANS 87
Query: 793 LFEMARFYAPSTIFIDEIDSLCSRRGSESEHEA 825
L E +FIDEI L SR+ E + A
Sbjct: 88 LEE------GDILFIDEIHRL-SRQAEEHLYPA 113
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 39/88 (44%), Gaps = 8/88 (9%)
Query: 733 EFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRL 792
E K + P + +L+ GPPG GKT LA +A E G V S K + L
Sbjct: 29 EAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVN-LRVTSGPAIEKPGDLAAILANS 87
Query: 793 LFEMARFYAPSTIFIDEIDSLCSRRGSE 820
L E +FIDEI L SR+ E
Sbjct: 88 LEE------GDILFIDEIHRL-SRQAEE 108
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 36.2 bits (82), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT-SKYRGES-EKLVRLLFEMARFYA- 801
+L++GP G+GKT++A+ +A +++LT + Y GE E ++ L + + +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 802 ---PSTIFIDEIDSL 813
+FIDEID +
Sbjct: 135 KAQKGIVFIDEIDKI 149
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 35.8 bits (81), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFF-------NVCSSTLTSKYRGESEKLVR 791
RR +++G PG GKT +A+ +A + V + + +KYRGE E ++
Sbjct: 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257
Query: 792 LLFEMARFYAPSTIFID 808
+ + R +FID
Sbjct: 258 KVMDEIRQAGNIILFID 274
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 738 IRRPWKGVLMVGPPGTGKTMLAKAVATEC----------GTTFFNVCSSTL--TSKYRGE 785
+RR +++G PG GKT + + +A G ++ +L +KYRGE
Sbjct: 50 LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE 109
Query: 786 -SEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815
E+L ++ E+ + +FIDE+ ++
Sbjct: 110 FEERLKAVIQEVVQSQGEVILFIDELHTVVG 140
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFF-------NVCSSTLTSKYRGESEKLVR 791
RR +++G PG GKT +A+ +A + V + + +KYRGE E ++
Sbjct: 198 RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGTKYRGEFEDRLK 257
Query: 792 LLFEMARFYAPSTIFID 808
+ + R +FID
Sbjct: 258 KVMDEIRQAGNIILFID 274
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 13/109 (11%)
Query: 738 IRRPWKGVLMVGPPGTGKTMLAKAVATEC----------GTTFFNVCSSTL--TSKYRGE 785
+RR +++G PG GKT + + +A G ++ +L +KYRGE
Sbjct: 187 LRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGE 246
Query: 786 -SEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSEL 833
E+L ++ E+ + +FIDE+ ++ +E +A +K L
Sbjct: 247 FEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL 295
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
VL+ GPPG GKT LA +A+E T +V S + K +G+ + +L + R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLER---GDV 105
Query: 805 IFIDEIDSL 813
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
VL+ GPPG GKT LA +A+E T +V S + K +G+ + +L + R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLER---GDV 105
Query: 805 IFIDEIDSL 813
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
VL+ GPPG GKT LA +A+E T +V S + K +G+ + +L + R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLER---GDV 105
Query: 805 IFIDEIDSL 813
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
VL+ GPPG GKT LA +A+E T +V S + K +G+ + +L + R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLER---GDV 105
Query: 805 IFIDEIDSL 813
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
VL+ GPPG GKT LA +A+E T +V S + K +G+ + +L + R
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLER---GDV 105
Query: 805 IFIDEIDSL 813
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRG-ESEKLVRLLFEMA 797
K +LM+GP G GKT +A+ +A F V ++ T Y G E + ++R L + A
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 106
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRG-ESEKLVRLLFEMA 797
K +LM+GP G GKT +A+ +A F V ++ T Y G E + ++R L + A
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 113
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 35.0 bits (79), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRG-ESEKLVRLLFEMA 797
K +LM+GP G GKT +A+ +A F V ++ T Y G E + ++R L + A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDAA 107
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRG-ESEKLVRLLFEMA 797
K +LM+GP G GKT +A+ +A F V ++ T Y G E + ++R L + A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 34.7 bits (78), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 728 PMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773
P+ PEF + P +L+ G PG GKT L K +A++ G + NV
Sbjct: 2 PLGSPEF---MLLP--NILLTGTPGVGKTTLGKELASKSGLKYINV 42
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSSTLTSKYRGESEKLV----RLLFEM 796
+ VL+ G PGTGKT +A +A G T F + S + S ++E L R +
Sbjct: 71 RAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVR 130
Query: 797 ARFYAPSTIFIDEIDSLCSR 816
+ A T+ + EID + SR
Sbjct: 131 IKAGAVHTVSLHEIDVINSR 150
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
VL+ GPPG G+T LA +A+E T +V S + K +G+ + +L + R
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTN-IHVTSGPVLVK-QGD---MAAILTSLER---GDV 105
Query: 805 IFIDEIDSL 813
+FIDEI L
Sbjct: 106 LFIDEIHRL 114
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 33.9 bits (76), Expect = 0.42, Method: Composition-based stats.
Identities = 27/108 (25%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVATEC----------GTTFFNVCSSTLT--SKYRGE- 785
RR +++G PG GKT + + +A G + L +KYRGE
Sbjct: 40 RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEF 99
Query: 786 SEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSEL 833
E+L +L ++A+ +FIDE+ ++ ++ +A +K L
Sbjct: 100 EERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL 147
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 33.1 bits (74), Expect = 0.66, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNV 773
+L+ G PG GKT L K +A++ G + NV
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINV 35
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Query: 243 KINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMR 285
K+NL E VDL ++ D SGADI ++C+++ M+++R
Sbjct: 16 KMNLSE-----EVDLEDYVARPDKISGADINSICQESGMLAVR 53
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 32.7 bits (73), Expect = 0.92, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 233 PSKAGREALLKINLKEVK-VDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286
P A R + +IN+ + V D + + +GYSG+DI V +DA M +R+
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRK 57
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 32.3 bits (72), Expect = 1.0, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 13/88 (14%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVATEC----------GTTFFNVCSSTLT--SKYRGE- 785
RR +++G PG GKT + + +A + G ++ S+L +KYRG+
Sbjct: 40 RRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDF 99
Query: 786 SEKLVRLLFEMARFYAPSTIFIDEIDSL 813
E+L +L E+ +FIDEI ++
Sbjct: 100 EERLKSILKEVQDAEGQVVMFIDEIHTV 127
>pdb|4A3V|B Chain B, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
pdb|4A3V|D Chain D, Yeast Regulatory Particle Proteasome Assembly Chaperone
Hsm3 In Complex With Rpt1 C-Terminal Fragment
Length = 95
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 232 LPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMR 285
LP GR + +I+ K + V+ + I+ +GA++ +VC +A M ++R
Sbjct: 7 LPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIR 60
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRG-ESEKLVRLLFEMA 797
K +L +GP G GKT +A+ +A F V ++ T Y G E + ++R L + A
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSA 107
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK 781
++ ++ GPPG GKT A VA E G +S + SK
Sbjct: 77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|3NWJ|A Chain A, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
pdb|3NWJ|B Chain B, Crystal Structure Of Shikimate Kinase From Arabidopsis
Thaliana (Atsk2)
Length = 250
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGES 786
+ + +VG G+GKT + K +A G TFF+ C + + +G S
Sbjct: 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFD-CDTLIEQAMKGTS 91
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 31.6 bits (70), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 17/19 (89%)
Query: 745 VLMVGPPGTGKTMLAKAVA 763
VL++G PGTGK+ML +A+A
Sbjct: 63 VLLIGEPGTGKSMLGQAMA 81
>pdb|2XSZ|D Chain D, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|E Chain E, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|F Chain F, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 378
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSSTLTSKYRGESEKLVR 791
+ VL+ G PGTGKT +A A G T F + S + S ++E L +
Sbjct: 86 RAVLIAGQPGTGKTAIAXGXAQALGPDTPFTAIAGSEIFSLEXSKTEALTQ 136
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 743 KGVLMVGPPGTGKTML 758
+G+++ GPPG+GKTM+
Sbjct: 1049 RGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 743 KGVLMVGPPGTGKTML 758
+G+++ GPPG+GKTM+
Sbjct: 1268 RGIILCGPPGSGKTMI 1283
>pdb|1WCG|A Chain A, Aphid Myrosinase
pdb|1WCG|B Chain B, Aphid Myrosinase
Length = 464
Score = 31.2 bits (69), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 11/123 (8%)
Query: 178 KLLRGSKTFRTLCIHKYRLLTFPSTP-VQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKA 236
KLL+G+ F L + RL+TF S P ++ +DEA + E IP+P
Sbjct: 295 KLLKGTADFYALNHYSSRLVTFGSDPNPNFNPDASYVTSVDEAWLKPNETPYIIPVPE-- 352
Query: 237 GREALLKINLKEVKVDPAVDLTHIA----SQLDGYSGADITNVCRDASMMSM---RRKII 289
G LL I LK +P + +T QLD + +A++ +M + +I
Sbjct: 353 GLRKLL-IWLKNEYGNPQLLITENGYGDDGQLDDFEKISYLKNYLNATLQAMYEDKCNVI 411
Query: 290 GLT 292
G T
Sbjct: 412 GYT 414
>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The
Hyperthermophilic Archaeon Pyrobaculum Islandicum
Length = 444
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 750 PPGTGKTMLAKAVATECGTTFFNVCSS 776
PPGT + ++A+AVA E G F+V S+
Sbjct: 147 PPGTTEGLVARAVAEEAGGVKFSVASN 173
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 30.8 bits (68), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 20/116 (17%)
Query: 745 VLMVGPPGTGKTMLAKAVATEC-GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPS 803
+L GPPG GKT A A+A E G + + S RG + ++ E + +A +
Sbjct: 49 LLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG-----INVIREKVKEFART 103
Query: 804 ---------TIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVV 850
IF+DE D+L ++ +A RR + + S SSK++
Sbjct: 104 KPIGGASFKIIFLDEADAL-----TQDAQQALRRTMEMFSSNVRFILSCNYSSKII 154
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.4 bits (67), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
+++ GPPGTGKT LA+ +A + + T K E+ + R R +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGR---RTI 109
Query: 805 IFIDEI 810
+F+DE+
Sbjct: 110 LFVDEV 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,569,956
Number of Sequences: 62578
Number of extensions: 942504
Number of successful extensions: 2922
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 2730
Number of HSP's gapped (non-prelim): 142
length of query: 863
length of database: 14,973,337
effective HSP length: 107
effective length of query: 756
effective length of database: 8,277,491
effective search space: 6257783196
effective search space used: 6257783196
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (26.2 bits)