Query psy11009
Match_columns 863
No_of_seqs 712 out of 4297
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 15:51:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11009.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11009hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0733|consensus 100.0 3.1E-68 6.7E-73 595.8 30.2 440 62-863 209-661 (802)
2 KOG0738|consensus 100.0 5.2E-66 1.1E-70 555.3 32.0 363 441-863 3-366 (491)
3 KOG0730|consensus 100.0 8.3E-59 1.8E-63 527.9 25.2 381 53-863 195-584 (693)
4 KOG0734|consensus 100.0 1.9E-56 4E-61 494.6 18.2 322 56-445 319-666 (752)
5 COG0465 HflB ATP-dependent Zn 100.0 1.1E-54 2.4E-59 500.7 19.2 342 55-465 164-537 (596)
6 KOG0733|consensus 100.0 1.2E-51 2.6E-56 462.6 17.2 263 43-338 496-787 (802)
7 KOG0731|consensus 100.0 4.2E-51 9.1E-56 477.6 21.8 338 57-463 327-693 (774)
8 KOG0730|consensus 100.0 6.1E-50 1.3E-54 455.6 15.3 232 58-336 450-690 (693)
9 KOG0736|consensus 100.0 1E-49 2.3E-54 456.3 17.0 248 59-337 689-949 (953)
10 TIGR01243 CDC48 AAA family ATP 100.0 7.2E-48 1.6E-52 466.5 32.8 399 60-863 196-604 (733)
11 PRK10733 hflB ATP-dependent me 100.0 9.2E-49 2E-53 466.5 20.3 333 70-465 180-542 (644)
12 CHL00176 ftsH cell division pr 100.0 3.3E-47 7.1E-52 449.6 20.0 338 63-465 203-572 (638)
13 KOG0735|consensus 100.0 2.4E-47 5.3E-52 433.2 16.4 199 59-289 684-891 (952)
14 COG1222 RPT1 ATP-dependent 26S 100.0 4.9E-47 1.1E-51 407.3 16.4 216 59-323 168-395 (406)
15 TIGR01241 FtsH_fam ATP-depende 100.0 7.7E-46 1.7E-50 430.7 20.0 374 63-513 75-480 (495)
16 KOG0738|consensus 100.0 1E-44 2.2E-49 390.9 14.1 246 59-335 229-484 (491)
17 KOG0736|consensus 100.0 5E-42 1.1E-46 393.4 31.3 160 702-863 665-825 (953)
18 COG0464 SpoVK ATPases of the A 100.0 6.4E-40 1.4E-44 381.1 31.4 382 60-863 2-392 (494)
19 KOG0741|consensus 100.0 2.7E-42 5.9E-47 382.1 7.4 279 59-367 238-549 (744)
20 KOG0739|consensus 100.0 1.3E-41 2.8E-46 356.1 9.8 246 58-334 149-430 (439)
21 CHL00206 ycf2 Ycf2; Provisiona 100.0 1E-40 2.3E-45 411.3 16.2 337 38-440 1589-1984(2281)
22 KOG0737|consensus 100.0 1.8E-38 3.8E-43 343.3 13.7 240 57-327 107-366 (386)
23 TIGR01243 CDC48 AAA family ATP 100.0 1.4E-37 3E-42 377.0 17.4 245 60-336 471-726 (733)
24 COG0464 SpoVK ATPases of the A 100.0 1.5E-37 3.2E-42 361.4 15.8 220 58-325 258-488 (494)
25 KOG0728|consensus 100.0 2.3E-37 5.1E-42 317.6 13.3 218 58-324 163-392 (404)
26 KOG0735|consensus 100.0 4.3E-35 9.4E-40 333.7 25.9 153 706-863 664-817 (952)
27 KOG0652|consensus 100.0 8.3E-36 1.8E-40 307.7 13.4 214 59-321 188-413 (424)
28 KOG0739|consensus 100.0 5.2E-33 1.1E-37 291.6 24.7 170 690-863 114-283 (439)
29 KOG0726|consensus 100.0 7E-35 1.5E-39 304.8 10.3 216 59-323 202-429 (440)
30 CHL00195 ycf46 Ycf46; Provisio 100.0 2.3E-34 5.1E-39 331.4 15.3 212 72-332 256-477 (489)
31 PTZ00454 26S protease regulato 100.0 7.1E-34 1.5E-38 320.9 16.8 215 60-323 163-389 (398)
32 COG1222 RPT1 ATP-dependent 26S 100.0 1.5E-33 3.3E-38 303.4 15.4 160 700-863 142-304 (406)
33 KOG0729|consensus 100.0 9E-34 1.9E-38 293.4 11.2 216 59-323 194-421 (435)
34 COG1223 Predicted ATPase (AAA+ 100.0 6.6E-33 1.4E-37 286.6 14.8 213 56-323 136-358 (368)
35 PRK03992 proteasome-activating 100.0 7.9E-33 1.7E-37 312.7 16.4 219 60-327 149-379 (389)
36 KOG0727|consensus 100.0 2.6E-32 5.6E-37 280.8 12.7 212 61-321 174-397 (408)
37 PTZ00361 26 proteosome regulat 100.0 2.2E-32 4.8E-37 310.9 13.5 214 60-322 201-426 (438)
38 KOG0740|consensus 100.0 7.1E-32 1.5E-36 301.3 11.0 240 58-335 169-419 (428)
39 TIGR03689 pup_AAA proteasome A 100.0 5.4E-31 1.2E-35 303.5 16.8 233 60-333 200-498 (512)
40 TIGR01242 26Sp45 26S proteasom 100.0 1.2E-29 2.7E-34 284.5 16.4 212 60-320 140-363 (364)
41 KOG0651|consensus 100.0 1.3E-30 2.8E-35 275.6 6.2 214 59-321 149-374 (388)
42 PLN00020 ribulose bisphosphate 100.0 3.7E-29 8.1E-34 273.6 12.2 195 60-285 135-353 (413)
43 KOG0734|consensus 100.0 1.9E-28 4E-33 272.8 13.0 157 701-863 296-453 (752)
44 KOG0727|consensus 99.9 6.9E-28 1.5E-32 248.3 13.2 159 701-863 147-308 (408)
45 KOG0732|consensus 99.9 1.1E-27 2.3E-32 287.6 13.0 242 58-327 281-532 (1080)
46 KOG0737|consensus 99.9 2.2E-27 4.8E-32 257.4 12.0 156 705-863 88-245 (386)
47 KOG0726|consensus 99.9 3E-27 6.6E-32 247.7 12.4 160 700-863 176-338 (440)
48 KOG0740|consensus 99.9 3.1E-26 6.7E-31 256.2 16.6 177 684-863 128-304 (428)
49 KOG0728|consensus 99.9 2.4E-26 5.2E-31 236.7 14.1 163 697-863 135-300 (404)
50 KOG0729|consensus 99.9 3.3E-26 7.2E-31 237.4 14.6 160 700-863 168-330 (435)
51 KOG0652|consensus 99.9 1.5E-25 3.3E-30 232.0 13.3 160 700-863 162-324 (424)
52 COG1223 Predicted ATPase (AAA+ 99.9 1.1E-25 2.3E-30 233.4 10.7 156 701-863 113-268 (368)
53 KOG0731|consensus 99.9 3E-25 6.5E-30 261.0 14.0 157 702-863 304-464 (774)
54 TIGR03689 pup_AAA proteasome A 99.9 3.2E-24 6.8E-29 247.6 14.3 165 695-863 168-347 (512)
55 PTZ00454 26S protease regulato 99.9 7.6E-24 1.6E-28 239.6 15.4 160 700-863 136-298 (398)
56 TIGR03345 VI_ClpV1 type VI sec 99.9 9.6E-22 2.1E-26 241.0 30.2 141 91-249 215-366 (852)
57 KOG0651|consensus 99.9 4.5E-23 9.8E-28 218.7 14.5 162 698-863 121-285 (388)
58 COG0465 HflB ATP-dependent Zn 99.9 3E-23 6.5E-28 240.7 12.3 156 703-863 144-302 (596)
59 PRK03992 proteasome-activating 99.9 9.1E-23 2E-27 230.9 14.6 160 700-863 122-284 (389)
60 PRK10865 protein disaggregatio 99.9 2.3E-21 5E-26 238.1 27.5 141 91-249 206-357 (857)
61 PLN00020 ribulose bisphosphate 99.9 1.6E-22 3.5E-27 221.8 13.8 123 740-863 146-282 (413)
62 PTZ00361 26 proteosome regulat 99.9 1.1E-22 2.5E-27 231.7 13.2 163 697-863 171-336 (438)
63 TIGR02639 ClpA ATP-dependent C 99.9 1.2E-21 2.6E-26 238.0 22.3 173 73-279 201-381 (731)
64 PRK11034 clpA ATP-dependent Cl 99.9 2.2E-21 4.7E-26 234.1 22.0 159 75-257 207-373 (758)
65 CHL00195 ycf46 Ycf46; Provisio 99.9 5.3E-22 1.2E-26 229.3 15.4 151 704-863 223-374 (489)
66 TIGR01241 FtsH_fam ATP-depende 99.9 3.7E-22 7.9E-27 232.7 13.3 158 701-863 47-207 (495)
67 TIGR03346 chaperone_ClpB ATP-d 99.9 8.3E-20 1.8E-24 225.0 29.6 143 91-251 201-354 (852)
68 TIGR01242 26Sp45 26S proteasom 99.8 6.7E-21 1.5E-25 213.9 14.6 159 701-863 114-275 (364)
69 CHL00095 clpC Clp protease ATP 99.8 3.3E-19 7.2E-24 219.1 28.7 151 72-246 197-354 (821)
70 KOG0732|consensus 99.8 8.7E-21 1.9E-25 228.5 12.3 160 699-863 255-420 (1080)
71 CHL00176 ftsH cell division pr 99.8 2.7E-20 5.9E-25 221.2 13.8 156 703-863 177-335 (638)
72 KOG0741|consensus 99.8 2.9E-19 6.3E-24 199.8 10.1 149 711-863 223-383 (744)
73 CHL00206 ycf2 Ycf2; Provisiona 99.8 6.3E-19 1.4E-23 220.1 12.0 127 729-863 1616-1786(2281)
74 PRK10733 hflB ATP-dependent me 99.8 1.8E-18 3.9E-23 207.3 13.4 156 703-863 146-304 (644)
75 PF00004 AAA: ATPase family as 99.7 2.3E-17 5E-22 156.5 13.1 115 745-863 1-116 (132)
76 KOG0742|consensus 99.7 3E-17 6.5E-22 179.2 12.4 172 77-279 386-588 (630)
77 COG0542 clpA ATP-binding subun 99.7 9.2E-16 2E-20 182.7 22.8 133 709-858 491-643 (786)
78 PF00004 AAA: ATPase family as 99.7 2.6E-17 5.7E-22 156.1 7.2 120 91-232 5-132 (132)
79 KOG0744|consensus 99.7 1E-16 2.2E-21 171.4 8.5 200 91-320 184-414 (423)
80 KOG0744|consensus 99.6 5E-16 1.1E-20 166.2 6.4 154 706-863 139-311 (423)
81 CHL00181 cbbX CbbX; Provisiona 99.6 5.6E-15 1.2E-19 161.1 14.6 180 78-288 62-259 (287)
82 KOG0743|consensus 99.6 3.9E-15 8.4E-20 166.5 10.2 149 705-863 197-352 (457)
83 TIGR02880 cbbX_cfxQ probable R 99.6 8.6E-15 1.9E-19 159.5 12.5 183 75-287 58-257 (284)
84 TIGR02881 spore_V_K stage V sp 99.6 1.3E-14 2.9E-19 155.9 13.8 175 91-287 49-242 (261)
85 CHL00181 cbbX CbbX; Provisiona 99.6 1.3E-14 2.9E-19 158.2 12.1 136 709-857 23-169 (287)
86 TIGR02880 cbbX_cfxQ probable R 99.5 2.4E-14 5.2E-19 156.0 12.1 136 710-858 23-169 (284)
87 TIGR02881 spore_V_K stage V sp 99.5 2.3E-14 5E-19 154.1 11.8 126 708-840 5-140 (261)
88 PF05496 RuvB_N: Holliday junc 99.5 1.2E-13 2.7E-18 143.7 15.1 139 697-862 12-162 (233)
89 KOG0742|consensus 99.5 4.6E-14 9.9E-19 154.6 12.3 153 700-863 346-499 (630)
90 PF01434 Peptidase_M41: Peptid 99.5 8.3E-15 1.8E-19 153.2 2.2 177 309-513 1-200 (213)
91 COG2256 MGS1 ATPase related to 99.4 5.5E-13 1.2E-17 147.3 10.5 125 698-860 13-144 (436)
92 TIGR02639 ClpA ATP-dependent C 99.4 2.5E-12 5.4E-17 157.0 13.9 146 691-859 164-321 (731)
93 PRK05342 clpX ATP-dependent pr 99.4 2.7E-12 5.7E-17 146.4 12.9 148 711-858 73-239 (412)
94 TIGR00763 lon ATP-dependent pr 99.4 3E-12 6.6E-17 157.1 12.8 140 709-863 320-477 (775)
95 PRK04195 replication factor C 99.3 4.4E-12 9.6E-17 147.9 13.1 135 698-862 3-143 (482)
96 TIGR00763 lon ATP-dependent pr 99.3 1.9E-12 4.2E-17 158.8 10.3 142 77-246 349-505 (775)
97 PRK14956 DNA polymerase III su 99.3 5.4E-12 1.2E-16 145.0 12.3 131 697-862 6-164 (484)
98 KOG0743|consensus 99.3 2.8E-12 6E-17 143.9 9.4 201 25-276 197-413 (457)
99 TIGR00390 hslU ATP-dependent p 99.3 4.6E-12 9.9E-17 142.8 11.1 87 711-797 14-104 (441)
100 KOG0989|consensus 99.3 4.2E-12 9E-17 136.1 10.1 133 697-862 24-172 (346)
101 PRK12323 DNA polymerase III su 99.3 5.1E-12 1.1E-16 148.6 11.6 131 697-862 4-167 (700)
102 PRK07003 DNA polymerase III su 99.3 7.5E-12 1.6E-16 148.8 12.2 131 697-862 4-162 (830)
103 CHL00095 clpC Clp protease ATP 99.3 1.1E-11 2.5E-16 152.9 13.3 145 691-859 161-317 (821)
104 PLN03025 replication factor C 99.3 1.8E-11 3.8E-16 135.6 12.9 129 698-862 2-142 (319)
105 KOG2028|consensus 99.3 2.5E-11 5.4E-16 132.0 13.4 129 697-860 126-262 (554)
106 TIGR00382 clpX endopeptidase C 99.3 1.6E-11 3.5E-16 139.6 12.5 148 711-858 79-247 (413)
107 PRK14962 DNA polymerase III su 99.3 1.3E-11 2.9E-16 143.1 11.9 130 698-862 3-160 (472)
108 PRK10865 protein disaggregatio 99.3 1.9E-11 4E-16 151.2 13.7 146 691-860 160-318 (857)
109 PRK14958 DNA polymerase III su 99.3 1.6E-11 3.4E-16 143.7 12.0 131 697-862 4-162 (509)
110 PRK00080 ruvB Holliday junctio 99.3 2.7E-11 5.8E-16 134.6 13.1 102 699-815 15-116 (328)
111 PHA02544 44 clamp loader, smal 99.3 2.9E-11 6.3E-16 133.1 12.9 135 697-862 9-144 (316)
112 KOG2004|consensus 99.3 2.7E-11 5.8E-16 140.9 12.3 138 709-862 411-567 (906)
113 PRK05201 hslU ATP-dependent pr 99.3 9.3E-12 2E-16 140.4 8.3 87 711-797 17-107 (443)
114 PRK14960 DNA polymerase III su 99.2 3E-11 6.4E-16 142.5 12.4 130 698-862 4-161 (702)
115 PRK14949 DNA polymerase III su 99.2 3.5E-11 7.6E-16 145.5 13.1 131 697-862 4-162 (944)
116 COG2255 RuvB Holliday junction 99.2 4.7E-11 1E-15 127.0 12.5 100 701-815 18-117 (332)
117 PRK00080 ruvB Holliday junctio 99.2 1.2E-10 2.6E-15 129.4 14.9 174 91-320 58-250 (328)
118 TIGR00635 ruvB Holliday juncti 99.2 6.7E-11 1.5E-15 129.5 12.5 130 707-863 2-143 (305)
119 PRK07994 DNA polymerase III su 99.2 5.9E-11 1.3E-15 141.4 12.7 130 698-862 5-162 (647)
120 TIGR03345 VI_ClpV1 type VI sec 99.2 8E-11 1.7E-15 145.4 14.3 145 691-859 169-326 (852)
121 COG0466 Lon ATP-dependent Lon 99.2 6.4E-11 1.4E-15 138.6 12.2 139 709-862 323-479 (782)
122 TIGR00635 ruvB Holliday juncti 99.2 1.5E-10 3.2E-15 126.9 14.2 132 162-319 81-228 (305)
123 PRK08691 DNA polymerase III su 99.2 9E-11 1.9E-15 139.5 13.2 131 697-862 4-162 (709)
124 PRK11034 clpA ATP-dependent Cl 99.2 9.2E-11 2E-15 142.6 13.2 147 691-860 168-326 (758)
125 PRK13342 recombination factor 99.2 9.5E-11 2.1E-15 134.3 12.4 97 699-814 2-105 (413)
126 PRK14964 DNA polymerase III su 99.2 1.1E-10 2.4E-15 135.4 12.3 129 699-862 3-159 (491)
127 PRK06645 DNA polymerase III su 99.2 1.1E-10 2.5E-15 136.1 12.3 131 697-862 9-171 (507)
128 PRK14961 DNA polymerase III su 99.2 1.2E-10 2.7E-15 131.2 12.2 131 697-862 4-162 (363)
129 PRK14969 DNA polymerase III su 99.2 1.3E-10 2.9E-15 136.7 12.8 131 697-862 4-162 (527)
130 TIGR03346 chaperone_ClpB ATP-d 99.2 1.4E-10 3E-15 143.9 13.4 145 691-859 155-312 (852)
131 PRK07764 DNA polymerase III su 99.2 1.2E-10 2.6E-15 142.6 12.6 130 698-862 4-163 (824)
132 PRK12402 replication factor C 99.2 1.9E-10 4.2E-15 127.1 13.1 70 698-779 4-78 (337)
133 PRK14959 DNA polymerase III su 99.2 1.4E-10 3.1E-15 137.1 12.6 131 697-862 4-162 (624)
134 PRK14951 DNA polymerase III su 99.2 1.2E-10 2.5E-15 138.5 11.9 131 697-862 4-167 (618)
135 PRK14952 DNA polymerase III su 99.2 2E-10 4.4E-15 135.9 13.3 129 699-862 3-161 (584)
136 PRK14957 DNA polymerase III su 99.1 2.4E-10 5.2E-15 134.3 13.0 130 697-861 4-161 (546)
137 PRK14963 DNA polymerase III su 99.1 2.4E-10 5.2E-15 133.7 12.8 129 699-862 4-159 (504)
138 PRK05896 DNA polymerase III su 99.1 1.9E-10 4.1E-15 135.5 11.9 131 697-862 4-162 (605)
139 PF07724 AAA_2: AAA domain (Cd 99.1 2.3E-10 5E-15 116.0 10.5 116 741-859 2-130 (171)
140 TIGR02928 orc1/cdc6 family rep 99.1 5.3E-10 1.2E-14 125.3 14.5 198 91-322 47-276 (365)
141 PRK14965 DNA polymerase III su 99.1 2.3E-10 5.1E-15 136.1 12.1 130 698-862 5-162 (576)
142 PRK05563 DNA polymerase III su 99.1 3.8E-10 8.3E-15 133.7 12.1 131 697-862 4-162 (559)
143 TIGR02902 spore_lonB ATP-depen 99.1 3.7E-10 8.1E-15 133.2 11.5 71 695-777 51-131 (531)
144 PRK07133 DNA polymerase III su 99.1 4.9E-10 1.1E-14 134.4 12.5 131 697-862 6-161 (725)
145 PRK06305 DNA polymerase III su 99.1 8.6E-10 1.9E-14 127.7 12.9 131 697-862 5-164 (451)
146 PRK14970 DNA polymerase III su 99.1 9E-10 2E-14 124.1 12.6 130 698-862 6-151 (367)
147 KOG0991|consensus 99.1 3.4E-10 7.3E-15 117.3 8.2 114 696-829 14-136 (333)
148 TIGR02397 dnaX_nterm DNA polym 99.1 7E-10 1.5E-14 123.8 11.4 129 698-861 3-159 (355)
149 PRK14948 DNA polymerase III su 99.0 1.2E-09 2.7E-14 130.6 12.9 131 697-862 4-164 (620)
150 PRK07940 DNA polymerase III su 99.0 1.1E-09 2.3E-14 124.7 11.7 131 707-862 3-160 (394)
151 PRK00411 cdc6 cell division co 99.0 1.6E-09 3.4E-14 122.9 13.1 142 160-324 136-286 (394)
152 cd00009 AAA The AAA+ (ATPases 99.0 4E-09 8.6E-14 99.8 13.7 124 713-860 2-131 (151)
153 PRK00440 rfc replication facto 99.0 1.7E-09 3.7E-14 118.5 12.7 131 696-861 4-144 (319)
154 PRK14955 DNA polymerase III su 99.0 1.7E-09 3.6E-14 123.5 12.8 61 697-768 4-64 (397)
155 PRK09111 DNA polymerase III su 99.0 1.5E-09 3.4E-14 129.1 12.6 134 697-861 12-174 (598)
156 PRK14953 DNA polymerase III su 99.0 1.4E-09 3.1E-14 126.8 11.6 130 697-861 4-161 (486)
157 COG1219 ClpX ATP-dependent pro 99.0 8.4E-10 1.8E-14 118.9 8.6 131 711-841 63-204 (408)
158 PRK10787 DNA-binding ATP-depen 99.0 2.7E-09 5.8E-14 130.8 14.0 136 709-859 322-475 (784)
159 PRK06647 DNA polymerase III su 99.0 2.2E-09 4.8E-14 127.2 12.4 131 697-862 4-162 (563)
160 PRK13341 recombination factor 99.0 2.2E-09 4.7E-14 130.2 12.0 98 698-814 17-122 (725)
161 PRK08451 DNA polymerase III su 99.0 3.4E-09 7.3E-14 124.2 12.3 130 698-862 3-160 (535)
162 PRK14954 DNA polymerase III su 98.9 4.5E-09 9.8E-14 125.4 13.2 60 698-768 5-64 (620)
163 TIGR00362 DnaA chromosomal rep 98.9 4E-09 8.6E-14 120.6 12.1 115 163-285 200-320 (405)
164 PRK14950 DNA polymerase III su 98.9 3.7E-09 8E-14 126.3 12.1 129 698-861 5-162 (585)
165 PRK00149 dnaA chromosomal repl 98.9 4.2E-09 9.2E-14 122.1 12.0 133 162-320 211-349 (450)
166 PRK10787 DNA-binding ATP-depen 98.9 4.4E-09 9.6E-14 128.9 12.2 200 91-319 356-581 (784)
167 KOG1969|consensus 98.9 4.5E-09 9.8E-14 123.1 11.5 115 695-813 257-399 (877)
168 PRK06893 DNA replication initi 98.9 8.4E-09 1.8E-13 109.2 12.4 156 91-279 46-207 (229)
169 PRK05342 clpX ATP-dependent pr 98.9 4.8E-09 1E-13 119.9 10.8 189 76-287 109-382 (412)
170 TIGR02902 spore_lonB ATP-depen 98.9 4.4E-09 9.4E-14 124.2 10.8 131 162-320 175-332 (531)
171 PF05673 DUF815: Protein of un 98.9 9E-09 1.9E-13 109.0 11.4 130 702-861 20-153 (249)
172 PF00158 Sigma54_activat: Sigm 98.9 1.3E-08 2.8E-13 102.9 11.5 124 711-859 1-144 (168)
173 COG2812 DnaX DNA polymerase II 98.9 2.3E-09 5E-14 124.4 6.2 137 697-862 4-162 (515)
174 PTZ00112 origin recognition co 98.8 1.9E-08 4.2E-13 120.7 13.3 136 160-321 867-1007(1164)
175 PRK14971 DNA polymerase III su 98.8 1.7E-08 3.7E-13 120.9 13.0 129 698-861 6-163 (614)
176 PRK14962 DNA polymerase III su 98.8 1.2E-08 2.6E-13 118.7 11.1 172 77-276 38-219 (472)
177 PRK00149 dnaA chromosomal repl 98.8 7.3E-09 1.6E-13 120.1 9.3 107 740-861 146-257 (450)
178 smart00382 AAA ATPases associa 98.8 2.8E-08 6E-13 92.9 10.8 75 742-816 2-93 (148)
179 PRK13342 recombination factor 98.8 1.6E-08 3.5E-13 116.0 10.9 170 91-320 43-219 (413)
180 TIGR02903 spore_lon_C ATP-depe 98.8 2.3E-08 5E-13 120.0 12.5 72 695-778 140-221 (615)
181 TIGR00362 DnaA chromosomal rep 98.8 1.5E-08 3.2E-13 115.9 9.7 107 740-862 134-246 (405)
182 TIGR00382 clpX endopeptidase C 98.8 1.2E-08 2.6E-13 116.4 8.8 182 91-286 123-387 (413)
183 KOG0745|consensus 98.8 1.9E-08 4.2E-13 112.1 9.6 98 743-840 227-332 (564)
184 COG0470 HolB ATPase involved i 98.8 2.9E-08 6.2E-13 109.0 11.0 123 710-862 2-152 (325)
185 KOG1051|consensus 98.8 3.1E-08 6.8E-13 120.6 12.2 160 680-859 533-711 (898)
186 PRK06893 DNA replication initi 98.8 4.9E-08 1.1E-12 103.4 12.1 127 703-862 10-139 (229)
187 PRK14088 dnaA chromosomal repl 98.8 1.7E-08 3.6E-13 116.8 9.2 74 742-816 130-209 (440)
188 PRK12377 putative replication 98.7 6.5E-08 1.4E-12 103.7 12.5 104 699-814 64-176 (248)
189 TIGR02640 gas_vesic_GvpN gas v 98.7 5.2E-08 1.1E-12 105.2 11.5 103 743-859 22-161 (262)
190 PRK12422 chromosomal replicati 98.7 8.8E-08 1.9E-12 110.9 13.7 136 162-320 202-343 (445)
191 PRK06645 DNA polymerase III su 98.7 7.8E-08 1.7E-12 112.6 13.3 173 91-282 50-236 (507)
192 TIGR03420 DnaA_homol_Hda DnaA 98.7 5.8E-08 1.3E-12 101.4 10.6 89 705-815 11-104 (226)
193 PRK08084 DNA replication initi 98.7 9.6E-08 2.1E-12 101.6 12.3 109 164-279 99-213 (235)
194 COG3829 RocR Transcriptional r 98.7 2.7E-08 5.8E-13 114.4 8.3 131 704-859 240-391 (560)
195 PRK14086 dnaA chromosomal repl 98.7 1.2E-07 2.6E-12 112.2 13.7 133 163-322 378-517 (617)
196 PF01078 Mg_chelatase: Magnesi 98.7 1.3E-08 2.7E-13 105.7 4.3 46 707-766 1-46 (206)
197 TIGR03420 DnaA_homol_Hda DnaA 98.7 1.5E-07 3.2E-12 98.4 12.5 168 75-285 38-211 (226)
198 COG0542 clpA ATP-binding subun 98.7 1.4E-07 3.1E-12 113.7 13.6 118 690-819 151-280 (786)
199 PRK08903 DnaA regulatory inact 98.7 9.5E-08 2.1E-12 100.5 10.9 87 703-814 12-103 (227)
200 PRK14088 dnaA chromosomal repl 98.7 5.4E-08 1.2E-12 112.6 9.7 132 162-320 194-332 (440)
201 PF00308 Bac_DnaA: Bacterial d 98.7 1.2E-07 2.7E-12 99.8 11.5 135 703-862 2-144 (219)
202 PRK07940 DNA polymerase III su 98.7 6E-08 1.3E-12 110.5 9.8 173 74-279 35-218 (394)
203 PRK07952 DNA replication prote 98.7 1.6E-07 3.4E-12 100.6 12.3 118 699-835 62-189 (244)
204 TIGR02928 orc1/cdc6 family rep 98.7 2.2E-07 4.7E-12 104.3 14.0 132 709-860 15-176 (365)
205 PRK14961 DNA polymerase III su 98.7 2.4E-07 5.3E-12 104.6 14.5 168 91-279 45-224 (363)
206 TIGR00602 rad24 checkpoint pro 98.7 9.4E-08 2E-12 114.3 11.5 69 697-772 72-140 (637)
207 PRK12402 replication factor C 98.6 1.7E-07 3.8E-12 103.7 12.3 103 162-280 125-228 (337)
208 PF05496 RuvB_N: Holliday junc 98.6 4E-08 8.6E-13 103.0 6.7 139 91-267 57-214 (233)
209 PRK14086 dnaA chromosomal repl 98.6 7.4E-08 1.6E-12 114.0 9.8 74 742-816 314-392 (617)
210 PRK08084 DNA replication initi 98.6 3.2E-07 6.9E-12 97.6 13.6 90 704-815 17-111 (235)
211 PRK04195 replication factor C 98.6 1.6E-07 3.5E-12 109.9 12.4 165 76-281 40-205 (482)
212 PRK12323 DNA polymerase III su 98.6 6.5E-07 1.4E-11 106.2 17.3 170 91-279 45-229 (700)
213 PRK08116 hypothetical protein; 98.6 1.3E-07 2.7E-12 102.7 10.5 101 742-859 114-221 (268)
214 PRK00411 cdc6 cell division co 98.6 3.9E-07 8.5E-12 103.4 14.9 132 708-860 29-184 (394)
215 PRK05563 DNA polymerase III su 98.6 3.2E-07 6.8E-12 109.2 14.6 170 91-281 45-226 (559)
216 PRK08691 DNA polymerase III su 98.6 1.7E-06 3.7E-11 103.7 20.5 176 75-280 38-225 (709)
217 TIGR02640 gas_vesic_GvpN gas v 98.6 1.2E-07 2.5E-12 102.5 9.5 75 163-246 106-198 (262)
218 PF07728 AAA_5: AAA domain (dy 98.6 9.8E-08 2.1E-12 92.4 8.0 103 744-860 1-125 (139)
219 PRK14956 DNA polymerase III su 98.6 1.7E-07 3.7E-12 108.4 11.2 168 91-279 47-226 (484)
220 TIGR01650 PD_CobS cobaltochela 98.6 5.4E-08 1.2E-12 107.6 6.8 106 742-860 64-189 (327)
221 PRK14960 DNA polymerase III su 98.6 3.3E-07 7.2E-12 108.8 12.9 168 91-279 44-223 (702)
222 TIGR02397 dnaX_nterm DNA polym 98.6 4.2E-07 9E-12 101.6 13.0 167 91-279 43-222 (355)
223 PRK05642 DNA replication initi 98.6 3.9E-07 8.4E-12 96.9 12.1 96 742-861 45-143 (234)
224 PRK07471 DNA polymerase III su 98.6 3.5E-07 7.6E-12 103.4 12.2 131 703-862 13-184 (365)
225 PHA02244 ATPase-like protein 98.6 1.9E-07 4.1E-12 104.5 9.6 104 743-859 120-231 (383)
226 PRK05564 DNA polymerase III su 98.6 3.7E-07 8E-12 101.0 11.9 123 707-862 2-136 (313)
227 PRK08181 transposase; Validate 98.6 1.9E-07 4.1E-12 101.3 9.4 71 743-815 107-181 (269)
228 PRK12422 chromosomal replicati 98.6 1.8E-07 3.9E-12 108.3 9.4 74 741-815 140-216 (445)
229 PRK08727 hypothetical protein; 98.5 8.2E-07 1.8E-11 94.3 13.0 175 91-319 48-230 (233)
230 COG2204 AtoC Response regulato 98.5 2.5E-07 5.5E-12 106.3 9.7 129 706-859 138-286 (464)
231 PRK13407 bchI magnesium chelat 98.5 5.7E-07 1.2E-11 100.4 12.3 75 164-246 130-216 (334)
232 PRK15424 propionate catabolism 98.5 1.5E-07 3.3E-12 110.9 8.1 128 707-859 217-373 (538)
233 COG3604 FhlA Transcriptional r 98.5 1.5E-07 3.3E-12 107.1 7.2 131 705-858 219-367 (550)
234 TIGR01817 nifA Nif-specific re 98.5 3.3E-07 7.2E-12 108.6 10.5 129 703-859 190-341 (534)
235 PRK13407 bchI magnesium chelat 98.5 1.4E-07 3.1E-12 105.2 6.7 51 704-766 3-53 (334)
236 COG0714 MoxR-like ATPases [Gen 98.5 4.1E-07 8.9E-12 101.3 10.4 135 90-247 49-204 (329)
237 COG0714 MoxR-like ATPases [Gen 98.5 1.7E-07 3.7E-12 104.4 7.1 122 711-858 26-163 (329)
238 COG1221 PspF Transcriptional r 98.5 1.6E-07 3.4E-12 106.2 6.8 129 705-858 74-223 (403)
239 PRK08903 DnaA regulatory inact 98.5 9.5E-07 2.1E-11 92.9 12.3 130 162-318 90-224 (227)
240 PRK07003 DNA polymerase III su 98.5 6.5E-07 1.4E-11 107.5 12.1 169 91-280 45-225 (830)
241 PRK14087 dnaA chromosomal repl 98.5 9.7E-07 2.1E-11 102.5 13.3 135 162-320 206-348 (450)
242 PRK06526 transposase; Provisio 98.5 2.7E-07 5.8E-12 99.4 8.0 72 742-815 98-173 (254)
243 TIGR02974 phageshock_pspF psp 98.5 2.8E-07 6.1E-12 102.8 8.3 124 711-859 1-144 (329)
244 PRK11331 5-methylcytosine-spec 98.5 7.2E-07 1.6E-11 102.3 11.7 128 708-860 174-336 (459)
245 COG2607 Predicted ATPase (AAA+ 98.5 8.9E-07 1.9E-11 92.9 11.1 132 701-862 52-187 (287)
246 PRK14087 dnaA chromosomal repl 98.5 7.4E-07 1.6E-11 103.5 11.5 77 739-815 138-220 (450)
247 PTZ00112 origin recognition co 98.5 1.6E-06 3.4E-11 104.8 14.3 128 709-858 755-911 (1164)
248 PHA02544 44 clamp loader, smal 98.5 4.6E-07 1E-11 99.9 9.3 76 161-247 99-174 (316)
249 PRK06835 DNA replication prote 98.5 7.2E-07 1.6E-11 99.5 10.7 70 743-814 184-259 (329)
250 TIGR02329 propionate_PrpR prop 98.5 2.9E-07 6.2E-12 108.5 7.9 129 706-859 209-358 (526)
251 PRK14964 DNA polymerase III su 98.5 9.4E-07 2E-11 103.0 12.0 171 91-281 42-223 (491)
252 PRK07133 DNA polymerase III su 98.5 1.2E-06 2.5E-11 105.9 13.0 168 91-279 47-223 (725)
253 PRK08727 hypothetical protein; 98.4 1E-06 2.2E-11 93.7 11.1 64 743-816 42-108 (233)
254 PRK05022 anaerobic nitric oxid 98.4 5.8E-07 1.3E-11 106.0 10.1 128 707-859 185-332 (509)
255 COG1484 DnaC DNA replication p 98.4 8.2E-07 1.8E-11 95.7 10.4 71 741-813 104-179 (254)
256 PRK13341 recombination factor 98.4 9.6E-07 2.1E-11 107.6 12.2 153 91-280 59-222 (725)
257 PRK09112 DNA polymerase III su 98.4 1.5E-06 3.2E-11 97.9 12.7 55 703-768 17-71 (351)
258 PRK05642 DNA replication initi 98.4 1.4E-06 3.1E-11 92.6 11.9 111 165-283 100-216 (234)
259 PRK15429 formate hydrogenlyase 98.4 7.1E-07 1.5E-11 108.9 10.8 129 705-859 372-521 (686)
260 CHL00081 chlI Mg-protoporyphyr 98.4 8.6E-07 1.9E-11 99.4 10.4 50 705-766 13-62 (350)
261 PRK14963 DNA polymerase III su 98.4 1.3E-06 2.9E-11 102.6 12.3 166 91-278 43-220 (504)
262 PRK08939 primosomal protein Dn 98.4 1.2E-06 2.6E-11 96.9 11.2 71 741-813 155-229 (306)
263 PRK13531 regulatory ATPase Rav 98.4 4.8E-07 1.1E-11 104.5 8.2 103 710-838 21-132 (498)
264 PRK06620 hypothetical protein; 98.4 1.9E-06 4.1E-11 90.6 11.9 102 164-279 87-193 (214)
265 PRK14953 DNA polymerase III su 98.4 1.6E-06 3.4E-11 101.5 12.4 168 91-279 45-224 (486)
266 PRK00440 rfc replication facto 98.4 2.1E-06 4.5E-11 94.2 12.5 101 162-278 102-203 (319)
267 TIGR02903 spore_lon_C ATP-depe 98.4 1.9E-06 4E-11 103.8 13.0 108 203-322 323-432 (615)
268 PRK10820 DNA-binding transcrip 98.4 1.2E-06 2.7E-11 103.5 11.2 132 703-859 198-349 (520)
269 PRK11331 5-methylcytosine-spec 98.4 5.8E-07 1.3E-11 103.0 8.2 62 161-231 271-356 (459)
270 PRK11608 pspF phage shock prot 98.4 1.2E-06 2.6E-11 97.8 10.5 127 708-859 5-151 (326)
271 PRK09183 transposase/IS protei 98.4 8.6E-07 1.9E-11 95.8 8.8 72 743-815 103-178 (259)
272 PRK14949 DNA polymerase III su 98.4 2.3E-06 4.9E-11 104.6 12.9 169 91-280 45-225 (944)
273 PRK14958 DNA polymerase III su 98.4 9.8E-07 2.1E-11 103.8 9.6 168 91-279 45-224 (509)
274 PF03215 Rad17: Rad17 cell cyc 98.4 1.6E-06 3.4E-11 102.0 11.2 72 696-774 6-77 (519)
275 PRK06620 hypothetical protein; 98.4 1.5E-06 3.2E-11 91.3 9.9 57 704-770 11-72 (214)
276 TIGR01650 PD_CobS cobaltochela 98.4 3E-07 6.4E-12 101.8 4.8 144 91-248 71-235 (327)
277 PRK05896 DNA polymerase III su 98.4 9E-07 1.9E-11 104.9 9.0 167 91-278 45-223 (605)
278 PLN03025 replication factor C 98.4 9.1E-07 2E-11 98.2 8.4 160 91-279 41-201 (319)
279 PF07726 AAA_3: ATPase family 98.4 1.7E-07 3.8E-12 90.2 2.2 102 744-860 1-114 (131)
280 TIGR02442 Cob-chelat-sub cobal 98.4 5.7E-07 1.2E-11 108.6 7.2 125 708-858 3-178 (633)
281 TIGR03015 pepcterm_ATPase puta 98.3 2.3E-06 5E-11 91.8 11.0 136 159-321 120-267 (269)
282 PF07728 AAA_5: AAA domain (dy 98.3 1.3E-07 2.8E-12 91.6 1.1 111 77-224 1-139 (139)
283 TIGR00678 holB DNA polymerase 98.3 2E-06 4.4E-11 87.9 10.0 100 740-862 12-139 (188)
284 PRK08058 DNA polymerase III su 98.3 2.2E-06 4.7E-11 95.8 10.7 122 707-862 3-153 (329)
285 PHA02244 ATPase-like protein 98.3 3.5E-07 7.5E-12 102.5 4.2 135 75-242 119-269 (383)
286 cd00009 AAA The AAA+ (ATPases 98.3 1.7E-06 3.6E-11 81.8 8.2 126 76-231 20-150 (151)
287 PRK14970 DNA polymerase III su 98.3 2E-06 4.4E-11 97.1 10.2 170 76-277 40-211 (367)
288 PRK07399 DNA polymerase III su 98.3 2.1E-06 4.6E-11 95.3 9.9 126 707-862 2-166 (314)
289 PRK11388 DNA-binding transcrip 98.3 1.9E-06 4.1E-11 104.4 10.1 131 704-859 320-467 (638)
290 PF01695 IstB_IS21: IstB-like 98.3 7.6E-07 1.6E-11 91.0 5.6 70 742-813 47-120 (178)
291 PRK05201 hslU ATP-dependent pr 98.3 6.4E-07 1.4E-11 101.7 5.4 80 163-242 250-344 (443)
292 TIGR00678 holB DNA polymerase 98.3 2.6E-06 5.7E-11 87.0 9.4 105 141-266 79-183 (188)
293 PRK06921 hypothetical protein; 98.3 3.9E-06 8.4E-11 91.1 11.2 68 742-812 117-188 (266)
294 PRK07994 DNA polymerase III su 98.3 5.5E-06 1.2E-10 99.5 13.2 168 91-279 45-224 (647)
295 KOG0990|consensus 98.3 6E-07 1.3E-11 97.5 4.5 133 697-862 29-174 (360)
296 PRK14969 DNA polymerase III su 98.3 2.9E-06 6.3E-11 100.4 10.6 168 91-279 45-224 (527)
297 smart00382 AAA ATPases associa 98.3 7.9E-07 1.7E-11 83.0 4.8 128 91-234 9-148 (148)
298 PF13177 DNA_pol3_delta2: DNA 98.3 5.4E-06 1.2E-10 83.4 11.1 118 713-862 1-145 (162)
299 PRK14951 DNA polymerase III su 98.3 5.8E-06 1.2E-10 99.0 13.1 170 91-279 45-229 (618)
300 smart00350 MCM minichromosome 98.3 5E-06 1.1E-10 98.1 12.5 77 163-247 301-401 (509)
301 PF14532 Sigma54_activ_2: Sigm 98.3 1E-06 2.3E-11 85.8 5.4 107 712-859 1-110 (138)
302 TIGR02030 BchI-ChlI magnesium 98.3 5E-06 1.1E-10 93.1 11.4 76 163-246 132-219 (337)
303 KOG2028|consensus 98.3 3.5E-06 7.6E-11 92.7 9.7 183 91-320 169-368 (554)
304 PRK07764 DNA polymerase III su 98.2 7.3E-06 1.6E-10 101.2 13.5 167 91-278 44-224 (824)
305 COG2256 MGS1 ATPase related to 98.2 5.3E-06 1.2E-10 92.8 11.0 148 91-278 55-212 (436)
306 COG0466 Lon ATP-dependent Lon 98.2 5.6E-06 1.2E-10 98.0 11.7 137 91-246 357-508 (782)
307 PRK05707 DNA polymerase III su 98.2 5.4E-06 1.2E-10 92.6 11.0 103 739-862 19-149 (328)
308 PRK09111 DNA polymerase III su 98.2 8.3E-06 1.8E-10 97.6 13.0 176 76-279 47-237 (598)
309 TIGR02030 BchI-ChlI magnesium 98.2 3.7E-06 8.1E-11 94.1 8.6 47 708-766 3-49 (337)
310 CHL00081 chlI Mg-protoporyphyr 98.2 2.1E-05 4.6E-10 88.3 14.6 76 163-246 145-232 (350)
311 PRK14957 DNA polymerase III su 98.2 6.3E-06 1.4E-10 97.5 10.9 166 91-279 45-224 (546)
312 COG1220 HslU ATP-dependent pro 98.2 4.1E-06 8.8E-11 91.6 8.3 85 711-795 17-105 (444)
313 PF06068 TIP49: TIP49 C-termin 98.2 4.9E-06 1.1E-10 92.8 9.0 80 708-795 23-104 (398)
314 TIGR00368 Mg chelatase-related 98.2 2.6E-06 5.7E-11 99.9 7.3 46 707-766 190-235 (499)
315 KOG1514|consensus 98.2 1.4E-05 3E-10 94.4 12.8 213 70-324 416-659 (767)
316 PRK14959 DNA polymerase III su 98.2 1.2E-05 2.7E-10 95.8 12.5 156 91-266 45-212 (624)
317 TIGR00390 hslU ATP-dependent p 98.2 1.2E-06 2.7E-11 99.4 3.9 80 163-242 248-342 (441)
318 PRK14950 DNA polymerase III su 98.2 1.9E-05 4.1E-10 94.8 14.2 170 91-279 45-225 (585)
319 KOG2004|consensus 98.1 3.1E-06 6.7E-11 99.7 6.9 177 91-287 445-653 (906)
320 PRK06647 DNA polymerase III su 98.1 2E-05 4.2E-10 94.0 13.8 168 91-279 45-224 (563)
321 COG0593 DnaA ATPase involved i 98.1 9.4E-06 2E-10 92.3 10.5 110 737-862 108-222 (408)
322 PRK06305 DNA polymerase III su 98.1 1.1E-05 2.3E-10 93.9 11.3 105 160-277 119-224 (451)
323 PRK09087 hypothetical protein; 98.1 1.3E-05 2.9E-10 84.9 10.9 127 165-320 90-222 (226)
324 TIGR02031 BchD-ChlD magnesium 98.1 2E-05 4.2E-10 94.6 13.6 136 91-247 23-175 (589)
325 PF07724 AAA_2: AAA domain (Cd 98.1 1.9E-06 4.1E-11 87.5 4.0 110 91-219 10-136 (171)
326 PRK14948 DNA polymerase III su 98.1 7.8E-06 1.7E-10 98.4 9.8 167 91-276 45-223 (620)
327 COG1224 TIP49 DNA helicase TIP 98.1 7.5E-06 1.6E-10 90.1 8.5 81 709-797 39-121 (450)
328 COG1474 CDC6 Cdc6-related prot 98.1 2.3E-05 5E-10 88.7 12.8 128 710-860 18-167 (366)
329 KOG1970|consensus 98.1 4.4E-05 9.5E-10 88.2 14.8 74 696-774 69-142 (634)
330 PRK08451 DNA polymerase III su 98.1 2E-05 4.4E-10 92.9 12.5 170 91-282 43-225 (535)
331 TIGR02442 Cob-chelat-sub cobal 98.1 2.1E-05 4.6E-10 95.2 13.0 75 164-246 128-214 (633)
332 smart00763 AAA_PrkA PrkA AAA d 98.1 8.8E-06 1.9E-10 91.2 8.9 63 707-775 48-118 (361)
333 cd01120 RecA-like_NTPases RecA 98.1 1.9E-05 4.2E-10 76.7 10.3 72 745-816 2-100 (165)
334 PF13401 AAA_22: AAA domain; P 98.1 1.7E-05 3.6E-10 75.4 9.6 86 742-838 4-113 (131)
335 PF00910 RNA_helicase: RNA hel 98.1 1E-05 2.2E-10 75.6 7.6 89 745-858 1-107 (107)
336 PRK14965 DNA polymerase III su 98.1 1.4E-05 3.1E-10 95.6 10.4 168 91-279 45-224 (576)
337 PRK09087 hypothetical protein; 98.0 1.8E-05 3.8E-10 84.0 9.2 55 743-813 45-99 (226)
338 COG1474 CDC6 Cdc6-related prot 98.0 2.8E-05 6E-10 88.1 11.1 148 160-333 121-278 (366)
339 COG2255 RuvB Holliday junction 98.0 4.3E-05 9.4E-10 82.3 10.8 158 77-279 54-227 (332)
340 PF00308 Bac_DnaA: Bacterial d 98.0 4.5E-05 9.8E-10 80.5 10.9 109 163-279 98-212 (219)
341 PRK14955 DNA polymerase III su 98.0 2.7E-05 5.9E-10 89.2 9.9 171 91-279 45-232 (397)
342 PRK14952 DNA polymerase III su 97.9 4.2E-05 9E-10 91.4 11.3 166 91-279 42-223 (584)
343 COG0606 Predicted ATPase with 97.9 8.1E-06 1.8E-10 93.3 5.1 48 705-766 175-222 (490)
344 PF13173 AAA_14: AAA domain 97.9 3.9E-05 8.4E-10 73.8 9.0 69 743-813 3-73 (128)
345 PRK06871 DNA polymerase III su 97.9 7.4E-05 1.6E-09 83.3 12.3 101 740-862 22-150 (325)
346 PRK13531 regulatory ATPase Rav 97.9 7.2E-05 1.6E-09 86.9 12.4 75 164-246 109-194 (498)
347 TIGR02915 PEP_resp_reg putativ 97.9 1.8E-05 3.8E-10 91.5 6.7 125 707-859 137-284 (445)
348 PF05673 DUF815: Protein of un 97.9 0.00013 2.9E-09 77.7 12.7 159 77-277 54-243 (249)
349 PRK11361 acetoacetate metaboli 97.9 5.5E-05 1.2E-09 87.6 10.7 124 708-859 142-288 (457)
350 COG1219 ClpX ATP-dependent pro 97.9 1E-05 2.2E-10 88.0 4.2 130 74-226 96-249 (408)
351 PRK10923 glnG nitrogen regulat 97.9 4.5E-05 9.7E-10 88.8 9.9 125 707-859 136-283 (469)
352 COG3283 TyrR Transcriptional r 97.9 3.2E-05 6.9E-10 85.2 7.8 134 701-859 196-344 (511)
353 PRK07993 DNA polymerase III su 97.9 0.00011 2.4E-09 82.3 12.2 102 740-862 22-151 (334)
354 PRK06964 DNA polymerase III su 97.8 6.4E-05 1.4E-09 84.4 10.1 106 739-862 18-175 (342)
355 PRK04132 replication factor C 97.8 4.4E-05 9.6E-10 94.1 9.5 98 741-862 563-673 (846)
356 TIGR00368 Mg chelatase-related 97.8 0.00021 4.6E-09 84.1 13.6 67 162-236 295-394 (499)
357 PRK09862 putative ATP-dependen 97.7 0.00022 4.7E-09 83.9 12.7 65 164-236 296-391 (506)
358 TIGR01618 phage_P_loop phage n 97.7 4.2E-05 9.2E-10 80.7 6.1 111 739-854 9-140 (220)
359 PRK08769 DNA polymerase III su 97.7 0.00021 4.4E-09 79.7 11.6 105 740-862 24-156 (319)
360 TIGR02031 BchD-ChlD magnesium 97.7 7.1E-05 1.5E-09 89.9 7.9 105 742-860 16-138 (589)
361 PRK15115 response regulator Gl 97.7 0.00011 2.3E-09 85.0 9.2 122 710-859 135-279 (444)
362 PRK14954 DNA polymerase III su 97.7 0.00024 5.2E-09 85.5 12.4 170 91-278 45-231 (620)
363 PRK09862 putative ATP-dependen 97.7 6.2E-05 1.3E-09 88.4 7.1 124 707-859 189-347 (506)
364 PRK08699 DNA polymerase III su 97.7 0.00018 3.9E-09 80.4 10.3 106 739-862 18-156 (325)
365 PRK06090 DNA polymerase III su 97.7 0.00034 7.4E-09 77.9 12.4 102 740-862 23-151 (319)
366 PF03969 AFG1_ATPase: AFG1-lik 97.7 0.0001 2.3E-09 83.4 8.3 101 740-859 60-168 (362)
367 smart00350 MCM minichromosome 97.7 4.9E-05 1.1E-09 89.9 5.9 134 710-859 204-353 (509)
368 TIGR02237 recomb_radB DNA repa 97.7 0.00026 5.6E-09 73.4 10.6 76 740-815 10-111 (209)
369 PRK04132 replication factor C 97.6 0.00037 8E-09 86.2 12.9 143 107-266 566-723 (846)
370 KOG0989|consensus 97.6 0.00013 2.7E-09 79.5 7.9 154 91-266 64-222 (346)
371 cd01124 KaiC KaiC is a circadi 97.6 0.0004 8.7E-09 70.2 10.9 71 745-815 2-109 (187)
372 PF05621 TniB: Bacterial TniB 97.6 0.00026 5.6E-09 77.6 9.8 196 66-287 51-273 (302)
373 TIGR00764 lon_rel lon-related 97.6 8.3E-05 1.8E-09 89.6 6.5 87 703-803 12-108 (608)
374 PRK09112 DNA polymerase III su 97.6 0.00038 8.3E-09 78.6 11.3 96 159-267 138-233 (351)
375 KOG2227|consensus 97.6 0.0006 1.3E-08 77.9 12.2 236 68-330 166-425 (529)
376 PF07726 AAA_3: ATPase family 97.5 2.2E-05 4.7E-10 75.9 0.3 106 90-224 5-129 (131)
377 PTZ00111 DNA replication licen 97.5 0.00016 3.5E-09 89.1 7.5 135 710-859 451-610 (915)
378 PF05621 TniB: Bacterial TniB 97.5 0.0014 3.1E-08 71.9 13.9 101 709-815 34-159 (302)
379 PF01637 Arch_ATPase: Archaeal 97.5 0.00033 7.1E-09 72.4 8.4 43 712-766 2-44 (234)
380 PRK14971 DNA polymerase III su 97.4 0.00081 1.8E-08 81.2 12.0 169 91-279 46-226 (614)
381 TIGR01818 ntrC nitrogen regula 97.4 0.00022 4.8E-09 82.8 7.0 124 708-859 133-279 (463)
382 PRK14722 flhF flagellar biosyn 97.4 0.00095 2.1E-08 75.8 11.7 105 742-862 137-262 (374)
383 KOG1942|consensus 97.4 0.00023 5.1E-09 76.7 6.3 72 709-787 38-111 (456)
384 TIGR00602 rad24 checkpoint pro 97.4 0.00097 2.1E-08 80.5 12.2 239 91-355 117-393 (637)
385 PRK14974 cell division protein 97.4 0.0023 5E-08 71.9 14.3 73 742-814 140-235 (336)
386 PHA00729 NTP-binding motif con 97.4 0.00031 6.6E-09 74.4 6.6 26 743-768 18-43 (226)
387 PRK08116 hypothetical protein; 97.4 0.00026 5.6E-09 77.1 6.2 70 164-243 180-257 (268)
388 PTZ00111 DNA replication licen 97.4 0.0019 4E-08 80.0 14.2 136 73-241 490-652 (915)
389 KOG0745|consensus 97.4 9E-05 1.9E-09 83.5 2.6 139 75-235 226-388 (564)
390 KOG1514|consensus 97.4 0.011 2.4E-07 70.6 19.8 129 709-859 396-551 (767)
391 PRK07471 DNA polymerase III su 97.4 0.0013 2.8E-08 74.8 11.8 109 141-268 124-232 (365)
392 PRK09361 radB DNA repair and r 97.4 0.0011 2.4E-08 69.6 10.5 75 740-815 21-121 (225)
393 PF13207 AAA_17: AAA domain; P 97.3 0.00019 4.1E-09 67.5 4.1 31 745-775 2-32 (121)
394 COG2812 DnaX DNA polymerase II 97.3 0.0011 2.4E-08 77.8 11.3 168 91-281 45-226 (515)
395 PRK05917 DNA polymerase III su 97.3 0.0017 3.6E-08 71.4 11.8 102 740-862 17-138 (290)
396 PRK05707 DNA polymerase III su 97.3 0.00062 1.3E-08 76.2 8.7 154 91-267 29-196 (328)
397 COG1239 ChlI Mg-chelatase subu 97.3 0.00076 1.7E-08 76.5 9.2 48 707-766 15-62 (423)
398 PRK15455 PrkA family serine pr 97.3 0.00038 8.3E-09 82.1 6.9 63 707-775 74-137 (644)
399 TIGR02012 tigrfam_recA protein 97.3 0.0015 3.3E-08 72.8 11.3 101 740-840 53-177 (321)
400 PRK10365 transcriptional regul 97.3 0.0011 2.3E-08 76.5 10.6 122 710-859 140-284 (441)
401 KOG2035|consensus 97.3 0.0015 3.1E-08 70.5 10.5 57 698-766 2-58 (351)
402 PRK08118 topology modulation p 97.2 0.00066 1.4E-08 68.6 7.1 34 743-776 2-35 (167)
403 COG0593 DnaA ATPase involved i 97.2 0.0034 7.3E-08 71.9 13.5 197 76-322 112-315 (408)
404 PRK11823 DNA repair protein Ra 97.2 0.0028 6.2E-08 73.8 13.3 99 740-838 78-195 (446)
405 cd01121 Sms Sms (bacterial rad 97.2 0.0023 5.1E-08 72.8 12.2 98 740-837 80-196 (372)
406 PRK00131 aroK shikimate kinase 97.2 0.00038 8.2E-09 69.3 4.8 34 741-774 3-36 (175)
407 PRK00771 signal recognition pa 97.2 0.0045 9.7E-08 71.9 14.1 37 741-777 94-133 (437)
408 PRK08533 flagellar accessory p 97.2 0.0025 5.5E-08 67.8 11.1 75 740-814 22-130 (230)
409 PF05729 NACHT: NACHT domain 97.2 0.0033 7.1E-08 61.5 11.1 73 744-816 2-96 (166)
410 PF06309 Torsin: Torsin; Inte 97.2 0.0018 4E-08 62.6 8.8 50 710-766 26-77 (127)
411 PRK06964 DNA polymerase III su 97.1 0.00093 2E-08 75.1 7.6 90 140-245 114-203 (342)
412 PRK07261 topology modulation p 97.1 0.001 2.3E-08 67.4 7.3 35 744-778 2-36 (171)
413 cd03283 ABC_MutS-like MutS-lik 97.1 0.0029 6.2E-08 65.9 10.6 68 743-811 26-115 (199)
414 cd00983 recA RecA is a bacter 97.1 0.0029 6.2E-08 70.7 11.1 75 742-816 55-148 (325)
415 TIGR03015 pepcterm_ATPase puta 97.1 0.0027 6E-08 68.1 10.6 25 743-767 44-68 (269)
416 KOG2170|consensus 97.1 0.0031 6.8E-08 68.8 10.8 131 711-858 84-224 (344)
417 PRK11889 flhF flagellar biosyn 97.1 0.0053 1.2E-07 70.0 12.8 160 680-859 185-364 (436)
418 cd01394 radB RadB. The archaea 97.0 0.0042 9E-08 64.9 11.0 37 740-776 17-56 (218)
419 PRK12723 flagellar biosynthesi 97.0 0.0088 1.9E-07 68.5 14.3 159 683-860 119-300 (388)
420 PF13671 AAA_33: AAA domain; P 97.0 0.0014 3.1E-08 63.2 6.7 33 745-779 2-34 (143)
421 TIGR00064 ftsY signal recognit 97.0 0.011 2.4E-07 64.6 14.0 90 684-776 16-109 (272)
422 PF13604 AAA_30: AAA domain; P 97.0 0.0067 1.4E-07 62.9 11.7 35 743-777 19-56 (196)
423 PRK13947 shikimate kinase; Pro 97.0 0.00077 1.7E-08 67.5 4.4 31 744-774 3-33 (171)
424 PF12774 AAA_6: Hydrolytic ATP 97.0 0.003 6.6E-08 67.3 9.0 64 743-813 33-96 (231)
425 TIGR02974 phageshock_pspF psp 96.9 0.0022 4.7E-08 71.9 7.9 181 75-282 22-232 (329)
426 PF01078 Mg_chelatase: Magnesi 96.9 0.00037 8E-09 72.8 1.4 133 75-236 22-205 (206)
427 COG1485 Predicted ATPase [Gene 96.9 0.0082 1.8E-07 67.0 11.9 99 739-859 62-171 (367)
428 PLN03210 Resistant to P. syrin 96.9 0.0083 1.8E-07 77.8 14.0 71 688-768 160-233 (1153)
429 PF01637 Arch_ATPase: Archaeal 96.9 0.0014 3E-08 67.8 5.7 103 163-269 119-229 (234)
430 PRK05564 DNA polymerase III su 96.9 0.0059 1.3E-07 67.8 10.9 147 91-269 33-185 (313)
431 COG2607 Predicted ATPase (AAA+ 96.9 0.0088 1.9E-07 63.6 11.3 162 77-279 87-277 (287)
432 PRK12726 flagellar biosynthesi 96.9 0.0098 2.1E-07 67.6 12.5 130 679-813 148-297 (407)
433 cd03216 ABC_Carb_Monos_I This 96.9 0.005 1.1E-07 61.8 9.3 71 740-812 24-111 (163)
434 cd01131 PilT Pilus retraction 96.9 0.0022 4.7E-08 66.6 6.8 68 744-811 3-84 (198)
435 PRK06067 flagellar accessory p 96.9 0.0077 1.7E-07 63.8 11.2 75 740-814 23-133 (234)
436 cd00464 SK Shikimate kinase (S 96.9 0.001 2.3E-08 65.0 4.2 31 744-774 1-31 (154)
437 PHA02624 large T antigen; Prov 96.9 0.0027 5.9E-08 75.4 8.3 62 742-815 431-492 (647)
438 PRK03839 putative kinase; Prov 96.8 0.001 2.2E-08 67.5 4.2 31 744-774 2-32 (180)
439 PRK05818 DNA polymerase III su 96.8 0.0044 9.6E-08 67.0 9.2 104 741-862 6-131 (261)
440 COG3854 SpoIIIAA ncharacterize 96.8 0.0028 6.2E-08 66.8 7.2 73 741-813 136-230 (308)
441 KOG1968|consensus 96.8 0.0012 2.6E-08 81.9 5.1 120 696-815 307-442 (871)
442 PRK10416 signal recognition pa 96.8 0.045 9.7E-07 61.2 17.1 128 683-813 57-208 (318)
443 cd01393 recA_like RecA is a b 96.8 0.0087 1.9E-07 62.7 10.9 38 740-777 17-63 (226)
444 PRK00625 shikimate kinase; Pro 96.8 0.0014 2.9E-08 66.9 4.4 31 744-774 2-32 (173)
445 KOG1051|consensus 96.8 0.013 2.9E-07 72.6 13.4 101 707-819 184-298 (898)
446 COG0606 Predicted ATPase with 96.7 0.0039 8.5E-08 71.9 8.3 126 91-238 205-384 (490)
447 cd01123 Rad51_DMC1_radA Rad51_ 96.7 0.0088 1.9E-07 63.0 10.5 38 740-777 17-63 (235)
448 KOG1969|consensus 96.7 0.0099 2.2E-07 71.3 11.7 167 91-287 333-519 (877)
449 cd00046 DEXDc DEAD-like helica 96.7 0.0033 7.2E-08 58.5 6.5 24 743-766 1-24 (144)
450 PHA02774 E1; Provisional 96.7 0.0049 1.1E-07 73.0 9.1 53 743-810 435-488 (613)
451 cd01129 PulE-GspE PulE/GspE Th 96.7 0.0036 7.8E-08 68.0 7.5 94 706-812 57-160 (264)
452 TIGR02688 conserved hypothetic 96.7 0.0019 4.2E-08 73.9 5.6 79 743-838 210-289 (449)
453 PRK14532 adenylate kinase; Pro 96.7 0.0015 3.3E-08 66.6 4.3 30 744-773 2-31 (188)
454 TIGR03499 FlhF flagellar biosy 96.7 0.013 2.8E-07 64.4 11.8 90 679-777 140-234 (282)
455 cd01122 GP4d_helicase GP4d_hel 96.7 0.011 2.4E-07 63.7 11.3 36 740-775 28-67 (271)
456 COG4650 RtcR Sigma54-dependent 96.7 0.0027 5.9E-08 68.6 6.3 74 742-815 208-296 (531)
457 cd03281 ABC_MSH5_euk MutS5 hom 96.7 0.013 2.8E-07 61.7 11.4 22 743-764 30-51 (213)
458 COG1618 Predicted nucleotide k 96.7 0.0081 1.8E-07 60.3 9.1 24 743-766 6-29 (179)
459 PF13191 AAA_16: AAA ATPase do 96.7 0.002 4.3E-08 64.6 4.9 59 711-778 2-63 (185)
460 PRK13765 ATP-dependent proteas 96.7 0.0019 4.1E-08 78.1 5.5 52 702-767 24-75 (637)
461 cd01128 rho_factor Transcripti 96.7 0.012 2.6E-07 63.5 11.1 26 743-768 17-42 (249)
462 PRK05800 cobU adenosylcobinami 96.7 0.0089 1.9E-07 60.8 9.6 34 744-777 3-36 (170)
463 KOG3347|consensus 96.7 0.0015 3.3E-08 64.6 3.7 32 743-774 8-39 (176)
464 PRK09354 recA recombinase A; P 96.7 0.012 2.5E-07 66.4 11.3 74 742-815 60-152 (349)
465 PRK13949 shikimate kinase; Pro 96.7 0.0017 3.7E-08 65.8 4.1 32 743-774 2-33 (169)
466 PRK05703 flhF flagellar biosyn 96.6 0.017 3.6E-07 67.1 12.7 89 680-777 168-261 (424)
467 PRK12724 flagellar biosynthesi 96.6 0.032 7E-07 64.3 14.8 167 680-860 162-347 (432)
468 PRK06762 hypothetical protein; 96.6 0.0053 1.2E-07 61.3 7.5 37 743-779 3-39 (166)
469 cd00267 ABC_ATPase ABC (ATP-bi 96.6 0.0085 1.8E-07 59.4 8.9 71 741-813 24-110 (157)
470 PRK09376 rho transcription ter 96.6 0.0042 9.1E-08 70.7 7.5 25 743-767 170-194 (416)
471 TIGR03877 thermo_KaiC_1 KaiC d 96.6 0.021 4.6E-07 60.9 12.4 37 740-776 19-58 (237)
472 TIGR01359 UMP_CMP_kin_fam UMP- 96.6 0.0019 4.2E-08 65.3 4.2 29 745-773 2-30 (183)
473 PRK10536 hypothetical protein; 96.6 0.011 2.4E-07 63.9 10.1 22 744-765 76-97 (262)
474 PF00437 T2SE: Type II/IV secr 96.6 0.0029 6.2E-08 68.5 5.6 97 705-811 100-207 (270)
475 TIGR02858 spore_III_AA stage I 96.6 0.0023 5.1E-08 69.7 4.8 69 742-810 111-203 (270)
476 PRK11608 pspF phage shock prot 96.6 0.0052 1.1E-07 68.8 7.7 172 91-281 36-238 (326)
477 PF06745 KaiC: KaiC; InterPro 96.6 0.013 2.8E-07 61.7 10.2 95 740-838 17-148 (226)
478 TIGR00764 lon_rel lon-related 96.6 0.0099 2.1E-07 71.9 10.4 103 203-322 268-393 (608)
479 cd02020 CMPK Cytidine monophos 96.5 0.0023 4.9E-08 61.9 4.1 30 745-774 2-31 (147)
480 PRK13406 bchD magnesium chelat 96.5 0.014 3.1E-07 70.1 11.6 129 77-237 27-173 (584)
481 PRK08699 DNA polymerase III su 96.5 0.0045 9.7E-08 69.3 6.6 90 139-244 94-183 (325)
482 PRK06217 hypothetical protein; 96.5 0.0025 5.4E-08 65.1 4.3 31 744-774 3-33 (183)
483 PF12775 AAA_7: P-loop contain 96.5 0.0057 1.2E-07 66.8 7.3 26 742-767 33-58 (272)
484 TIGR01420 pilT_fam pilus retra 96.5 0.005 1.1E-07 69.4 7.1 71 741-811 121-205 (343)
485 PF05707 Zot: Zonular occluden 96.5 0.0057 1.2E-07 63.2 6.9 107 745-863 3-130 (193)
486 cd00227 CPT Chloramphenicol (C 96.5 0.0024 5.1E-08 64.7 4.0 36 743-778 3-38 (175)
487 PRK14531 adenylate kinase; Pro 96.5 0.0029 6.2E-08 64.7 4.6 31 743-773 3-33 (183)
488 cd02021 GntK Gluconate kinase 96.5 0.0026 5.6E-08 62.4 4.0 29 745-773 2-30 (150)
489 cd03243 ABC_MutS_homologs The 96.5 0.014 3.1E-07 60.5 9.8 21 743-763 30-50 (202)
490 cd01428 ADK Adenylate kinase ( 96.5 0.0027 5.7E-08 64.7 4.2 29 745-773 2-30 (194)
491 COG0470 HolB ATPase involved i 96.5 0.0071 1.5E-07 66.4 7.9 88 140-243 91-178 (325)
492 TIGR00416 sms DNA repair prote 96.5 0.022 4.7E-07 66.7 12.1 76 740-815 92-184 (454)
493 TIGR01425 SRP54_euk signal rec 96.5 0.052 1.1E-06 62.9 15.0 73 741-813 99-194 (429)
494 TIGR02525 plasmid_TraJ plasmid 96.4 0.0055 1.2E-07 69.8 6.9 70 743-812 150-236 (372)
495 PF14516 AAA_35: AAA-like doma 96.4 0.034 7.4E-07 62.4 13.2 42 737-778 26-70 (331)
496 TIGR01313 therm_gnt_kin carboh 96.4 0.0024 5.3E-08 63.5 3.6 29 745-773 1-29 (163)
497 PRK14530 adenylate kinase; Pro 96.4 0.0032 7E-08 65.9 4.7 31 743-773 4-34 (215)
498 PRK13948 shikimate kinase; Pro 96.4 0.0036 7.8E-08 64.4 4.9 35 740-774 8-42 (182)
499 PF00448 SRP54: SRP54-type pro 96.4 0.017 3.7E-07 60.1 9.9 71 742-812 1-94 (196)
500 cd03228 ABCC_MRP_Like The MRP 96.4 0.02 4.4E-07 57.7 10.2 27 740-766 26-52 (171)
No 1
>KOG0733|consensus
Probab=100.00 E-value=3.1e-68 Score=595.80 Aligned_cols=440 Identities=30% Similarity=0.456 Sum_probs=349.5
Q ss_pred cCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhhhh
Q psy11009 62 SKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALTVG 137 (863)
Q Consensus 62 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg 137 (863)
-|.|++|. |-++-..|+|+- |+||||||.+|.++|. |+|+++..|++ .+.|-|
T Consensus 209 i~~Pe~~~~lGv~PprGvLlH---------GPPGCGKT~lA~AiAgel~vPf~~isApei--------------vSGvSG 265 (802)
T KOG0733|consen 209 IKHPEVFSSLGVRPPRGVLLH---------GPPGCGKTSLANAIAGELGVPFLSISAPEI--------------VSGVSG 265 (802)
T ss_pred hcCchhHhhcCCCCCCceeee---------CCCCccHHHHHHHHhhhcCCceEeecchhh--------------hcccCc
Confidence 78999999 988889999999 9999999999999998 99999999999 899999
Q ss_pred hHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCC---CCCeEEEEccC
Q psy11009 138 SSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFP---STPVQYSIQKG 211 (863)
Q Consensus 138 ~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~---~~~VivIaATN 211 (863)
+||+++|.+|+.+ .+..||||||||||+|+.+|.. ++.+|++.|||+.||++... +++|+||||||
T Consensus 266 ESEkkiRelF~~A--------~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATn 337 (802)
T KOG0733|consen 266 ESEKKIRELFDQA--------KSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATN 337 (802)
T ss_pred ccHHHHHHHHHHH--------hccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCC
Confidence 9999999999976 8899999999999999999965 77899999999999999866 56899999999
Q ss_pred CCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhc
Q psy11009 212 IPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKII 289 (863)
Q Consensus 212 ~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~ 289 (863)
|||.|||||+| |||+-|.++.|+..+|.+||+..++++.++.++|+..||++|+||-||||..+|.+|+..|++|.+.
T Consensus 338 RPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld 417 (802)
T KOG0733|consen 338 RPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILD 417 (802)
T ss_pred CCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999998532
Q ss_pred CCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccccccCCccccc
Q psy11009 290 GLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLIS 369 (863)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~ll~Gp~g~~~ 369 (863)
. ..+..++
T Consensus 418 ~-----------------------------~~~p~~~------------------------------------------- 425 (802)
T KOG0733|consen 418 Q-----------------------------SSSPLTK------------------------------------------- 425 (802)
T ss_pred c-----------------------------ccCcccc-------------------------------------------
Confidence 1 0000000
Q ss_pred cccccccchHHHHHHHhhhhhhhhhhccCCcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchhHHHHHHHHH
Q psy11009 370 RDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTT 449 (863)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~l~~i~e~~~ 449 (863)
.+. +|.+-+.+++-|= +. |.++.+|..
T Consensus 426 -------~~~------------~ed~~~~~~~~d~---S~---------------------i~~~~~~~~---------- 452 (802)
T KOG0733|consen 426 -------VPI------------SEDSSNKDAEEDQ---SS---------------------IKITSNAER---------- 452 (802)
T ss_pred -------CCc------------cccccCCCccchh---hh---------------------hhcCCcccc----------
Confidence 000 0000000011110 00 111222110
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCC
Q psy11009 450 IARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNS 529 (863)
Q Consensus 450 laRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~tl~~fk~~~~~~~~~~~~~ 529 (863)
.. -.+.++ ++++..=.|| +- . |+..-|.-+++.|-..-+
T Consensus 453 -------------~~-~ld~v~---~~~i~~~~d~-~S------------~--E~~~~L~i~~eDF~~Al~--------- 491 (802)
T KOG0733|consen 453 -------------PL-ELDRVV---QDAILNNPDP-LS------------K--ELLEGLSIKFEDFEEALS--------- 491 (802)
T ss_pred -------------cc-cHHHHH---HHHHHhCCCC-cC------------h--HHhccceecHHHHHHHHH---------
Confidence 00 011111 2223322333 11 0 011111122222222110
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccccCCcCCCCCCCCCCCCCCccccCCCCCCC
Q psy11009 530 RPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPA 609 (863)
Q Consensus 530 ~~~~~~~~~ss~~~~~~~~~~~dpdvw~~p~~~d~~~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~ss~~r~~~~~~ 609 (863)
+-|+
T Consensus 492 -------------------------------------------~iQP--------------------------------- 495 (802)
T KOG0733|consen 492 -------------------------------------------KIQP--------------------------------- 495 (802)
T ss_pred -------------------------------------------hcCc---------------------------------
Confidence 0000
Q ss_pred CCCCCCCCCCcccchhhhccCCCCchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccCCCCh
Q psy11009 610 NNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDN 689 (863)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~s~ds~~~~~~~~~~~~~~~s~~~n~~~~n~~~~~~~~~~~~~~~~~~~~~k~~~~g~d~ 689 (863)
T Consensus 496 -------------------------------------------------------------------------------- 495 (802)
T KOG0733|consen 496 -------------------------------------------------------------------------------- 495 (802)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCC
Q psy11009 690 DLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGT 768 (863)
Q Consensus 690 ~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~ 768 (863)
...++-....|.++|+||+++++++.+|..+|.+|.++|+.|+.+| .++.||||+||||||||+||+|+|++.+.
T Consensus 496 ----SakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~ 571 (802)
T KOG0733|consen 496 ----SAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGA 571 (802)
T ss_pred ----chhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccC
Confidence 0011122346789999999999999999999999999999999998 77899999999999999999999999999
Q ss_pred cEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCC
Q psy11009 769 TFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSK 848 (863)
Q Consensus 769 ~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~ 848 (863)
.|+.|.+.+|.++|+||+|+.+|.+|..|+..+||||||||+|+|+++|+.++ .+...|+++|||..|||+... .
T Consensus 572 NFisVKGPELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R----~ 646 (802)
T KOG0733|consen 572 NFISVKGPELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEER----R 646 (802)
T ss_pred ceEeecCHHHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccc----c
Confidence 99999999999999999999999999999999999999999999999997765 788899999999999999654 4
Q ss_pred ceEEEEecCCCCCCC
Q psy11009 849 VVMVLAATNFPWEGA 863 (863)
Q Consensus 849 ~VvVIaTTN~P~~ID 863 (863)
.|.||+|||||+.||
T Consensus 647 gV~viaATNRPDiID 661 (802)
T KOG0733|consen 647 GVYVIAATNRPDIID 661 (802)
T ss_pred ceEEEeecCCCcccc
Confidence 499999999999998
No 2
>KOG0738|consensus
Probab=100.00 E-value=5.2e-66 Score=555.30 Aligned_cols=363 Identities=53% Similarity=0.846 Sum_probs=287.3
Q ss_pred HHHHHHHHHHHHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCC
Q psy11009 441 YAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNV 520 (863)
Q Consensus 441 l~~i~e~~~laRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~tl~~fk~~~~ 520 (863)
+..++|++++||+|+++|||+++.+||+|++.||+||++++.|+ ..+.+|+|++|+|.+||++||+|+.+++.|+.+++
T Consensus 3 ~~g~~~~ak~ar~~al~G~~d~~~~~~~g~~~~~~r~l~s~~d~-~~~~k~~~~~q~l~~e~e~vk~i~~~~~~~~~a~~ 81 (491)
T KOG0738|consen 3 LAGISENAKLAREYALLGNYDSAGIYYRGLLYLMNRYLVSTGDP-YAQGKWSQVEQALTEEYELVKQIVRDLRDLKEAST 81 (491)
T ss_pred hhhHHHHHHHHHHHHHhcCcchhHHHHHhHHHHHHHHHhccCCc-ccchHHHHHHHHhhHHHHHHHHHHHHHHhhccccC
Confidence 78999999999999999999999999999999999999999999 99999999999999999999999999999999985
Q ss_pred ccccccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcc-cccCCcCCCCCCCCCCCCCCc
Q psy11009 521 NDERMLGNSRPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTK-TFSKTRKSSIPNKSTPQSNNS 599 (863)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~dpdvw~~p~~~d~~~y~~~~~~~~~~~-~~~~~~~~~s~~~~~~~~s~s 599 (863)
+ . -+.+.+.+|..|||||++|+| ..+++.+...+ +.++++.....
T Consensus 82 ----------~-~-------~~~s~~d~P~~dp~Vw~~p~p------~~~r~~~~~~kt~~~~~~~~~~~---------- 127 (491)
T KOG0738|consen 82 ----------P-T-------LKFSGHDEPPIDPDVWAKPKP------VERRPAPASRKTRPSSPFGKKKA---------- 127 (491)
T ss_pred ----------c-c-------cccCCCCCCCCCccccCCCCc------cccCCCccccccccccccCCCCC----------
Confidence 1 1 112345668899999999998 34444333321 11122211111
Q ss_pred cccCCCCCCCCCCCCCCCCCcccchhhhccCCCCchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhh
Q psy11009 600 TLKRGNKTPANNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQE 679 (863)
Q Consensus 600 s~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ds~~~~~~~~~~~~~~~s~~~n~~~~n~~~~~~~~~~~~~~~~~~~~ 679 (863)
+..+.+-+...-.+ ++.. +.++...++....+... .++...+...........+.
T Consensus 128 --------~~~~~~~~~r~~~~---------s~t~-------~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 182 (491)
T KOG0738|consen 128 --------PTTAASPAGRPIGK---------SSTQ-------NLSTDRADSSTARETNG-ESKGLGNSNEQPHASLKGED 182 (491)
T ss_pred --------CCCCCCCCCCCCCC---------cccc-------CCCCCcccccccccccc-cccccccccCCccccccccc
Confidence 11111111110000 0000 00000000000000000 00000000011111224567
Q ss_pred hccccCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHH
Q psy11009 680 RRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLA 759 (863)
Q Consensus 680 ~k~~~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LA 759 (863)
+.|+..+++.++++.++++|..++|.++|+||+|+.++|+.|.++|++|+++|++|+++.+||+||||+||||||||+||
T Consensus 183 ~~f~~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 183 KKFDSLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLA 262 (491)
T ss_pred CCCCcccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc
Q psy11009 760 KAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG 839 (863)
Q Consensus 760 raIA~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~ 839 (863)
+|+|.+|+..||+|+++++.++|+|++|+.+|.+|++|+.++|++|||||||+||.+||+.++|+.++|+.++||.||||
T Consensus 263 KAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG 342 (491)
T KOG0738|consen 263 KAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDG 342 (491)
T ss_pred HHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCceEEEEecCCCCCCC
Q psy11009 840 LSSAEDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 840 l~~~~~~~~~VvVIaTTN~P~~ID 863 (863)
+....+..+.|+|+|+||.||+||
T Consensus 343 ~~~t~e~~k~VmVLAATN~PWdiD 366 (491)
T KOG0738|consen 343 VQGTLENSKVVMVLAATNFPWDID 366 (491)
T ss_pred cccccccceeEEEEeccCCCcchH
Confidence 998877778899999999999998
No 3
>KOG0730|consensus
Probab=100.00 E-value=8.3e-59 Score=527.91 Aligned_cols=381 Identities=33% Similarity=0.475 Sum_probs=338.2
Q ss_pred ecchhhccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHH
Q psy11009 53 FGNILTFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKE 128 (863)
Q Consensus 53 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e 128 (863)
+.-++.-+|-.||.+|. .-+....|.|+| |+||||||.+++++++ -+|+-+.+|+|
T Consensus 195 ~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~---------gppg~Gkt~l~~aVa~e~~a~~~~i~~pel----------- 254 (693)
T KOG0730|consen 195 VIRELVELPLRHPALFKSIGIKPPRGLLLY---------GPPGTGKTFLVRAVANEYGAFLFLINGPEL----------- 254 (693)
T ss_pred HHHHHHHhhhcchhhhhhcCCCCCCCcccc---------CCCCCChHHHHHHHHHHhCceeEecccHHH-----------
Confidence 35578889999999998 888899999999 9999999999999998 67888999999
Q ss_pred HHHHHhhhhhHHHHHHHHhhcccceeeeccCCCC-cEEEEEeccccccccccc-c-hhHhHHHHHHHHhhccCCCCCCeE
Q psy11009 129 AITLALTVGSSLNLYRSITNRGFYIEDYEVSPPG-PTLAVAKMFSSLAVQKLL-R-GSKTFRTLCIHKYRLLTFPSTPVQ 205 (863)
Q Consensus 129 ~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~-P~IlFiDEiDal~~~R~~-~-~~~~v~n~lL~~ld~~~~~~~~Vi 205 (863)
++.|.|++|.+.|.+|+.+ .... |+||||||+|+++.+|.. . ..+|++.+|+++||++.... +|+
T Consensus 255 ---i~k~~gEte~~LR~~f~~a--------~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~-~vi 322 (693)
T KOG0730|consen 255 ---ISKFPGETESNLRKAFAEA--------LKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDA-KVI 322 (693)
T ss_pred ---HHhcccchHHHHHHHHHHH--------hccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcC-cEE
Confidence 8899999999999999875 4555 999999999999999955 3 47999999999999998555 999
Q ss_pred EEEccCCCCCccHHHhh-ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHH
Q psy11009 206 YSIQKGIPWDIDEALRR-RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSM 284 (863)
Q Consensus 206 vIaATN~p~~LD~AllR-RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~ai 284 (863)
||+|||+|+.||+|+.| |||+-++|+.|+..+|.+|++.+++++++..++++..+|..|.||.||||..+|++|++.++
T Consensus 323 vl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~ 402 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLAALCREASLQAT 402 (693)
T ss_pred EEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHHHHHHHHHHHHh
Confidence 99999999999999999 99999999999999999999999999999988999999999999999999999999966554
Q ss_pred HhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccccccCC
Q psy11009 285 RRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGP 364 (863)
Q Consensus 285 r~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~ll~Gp 364 (863)
|+
T Consensus 403 r~------------------------------------------------------------------------------ 404 (693)
T KOG0730|consen 403 RR------------------------------------------------------------------------------ 404 (693)
T ss_pred hh------------------------------------------------------------------------------
Confidence 41
Q ss_pred ccccccccccccchHHHHHHHhhhhhhhhhhccCCcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchhHHHH
Q psy11009 365 VGLISRDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEI 444 (863)
Q Consensus 365 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~l~~i 444 (863)
T Consensus 405 -------------------------------------------------------------------------------- 404 (693)
T KOG0730|consen 405 -------------------------------------------------------------------------------- 404 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc
Q psy11009 445 AESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDER 524 (863)
Q Consensus 445 ~e~~~laRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~tl~~fk~~~~~~~~ 524 (863)
+++.|+....
T Consensus 405 ------------------------------------------------------------------~~~~~~~A~~---- 414 (693)
T KOG0730|consen 405 ------------------------------------------------------------------TLEIFQEALM---- 414 (693)
T ss_pred ------------------------------------------------------------------hHHHHHHHHh----
Confidence 3344443321
Q ss_pred ccCCCCCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccccCCcCCCCCCCCCCCCCCccccCC
Q psy11009 525 MLGNSRPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRG 604 (863)
Q Consensus 525 ~~~~~~~~~~~~~~ss~~~~~~~~~~~dpdvw~~p~~~d~~~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~ss~~r~ 604 (863)
..+| +.
T Consensus 415 ---~i~p----------------------------sa------------------------------------------- 420 (693)
T KOG0730|consen 415 ---GIRP----------------------------SA------------------------------------------- 420 (693)
T ss_pred ---cCCc----------------------------hh-------------------------------------------
Confidence 0000 00
Q ss_pred CCCCCCCCCCCCCCCcccchhhhccCCCCchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhcccc
Q psy11009 605 NKTPANNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFES 684 (863)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~ds~~~~~~~~~~~~~~~s~~~n~~~~n~~~~~~~~~~~~~~~~~~~~~k~~~ 684 (863)
T Consensus 421 -------------------------------------------------------------------------------- 420 (693)
T KOG0730|consen 421 -------------------------------------------------------------------------------- 420 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHH
Q psy11009 685 YGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVA 763 (863)
Q Consensus 685 ~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA 763 (863)
.+......|+++|+||+|++++|++|++.|.||+++|+.|...+ .|++|||||||||||||++|+|+|
T Consensus 421 -----------~Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalA 489 (693)
T KOG0730|consen 421 -----------LREILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALA 489 (693)
T ss_pred -----------hhheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHh
Confidence 00011234678999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHhCCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCC
Q psy11009 764 TECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSA 843 (863)
Q Consensus 764 ~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~ 843 (863)
++++..|+.+.+.++.++|+|++|+.++.+|..|+..+||||||||||+++..|+++ ++++..|++++||++|||+...
T Consensus 490 ne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~-~~~v~~RVlsqLLtEmDG~e~~ 568 (693)
T KOG0730|consen 490 NEAGMNFLSVKGPELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGS-SSGVTDRVLSQLLTEMDGLEAL 568 (693)
T ss_pred hhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCC-ccchHHHHHHHHHHHccccccc
Confidence 999999999999999999999999999999999999999999999999999999744 4589999999999999999653
Q ss_pred CCCCCceEEEEecCCCCCCC
Q psy11009 844 EDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 844 ~~~~~~VvVIaTTN~P~~ID 863 (863)
++|+||||||||+.||
T Consensus 569 ----k~V~ViAATNRpd~ID 584 (693)
T KOG0730|consen 569 ----KNVLVIAATNRPDMID 584 (693)
T ss_pred ----CcEEEEeccCChhhcC
Confidence 5699999999999998
No 4
>KOG0734|consensus
Probab=100.00 E-value=1.9e-56 Score=494.56 Aligned_cols=322 Identities=20% Similarity=0.246 Sum_probs=286.2
Q ss_pred hhhccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHH
Q psy11009 56 ILTFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAIT 131 (863)
Q Consensus 56 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~ 131 (863)
|..|| |-|.-|. |-=...-|+||- |+|||||||||+++|- .-|..--|++.
T Consensus 319 iVefL--kdP~kftrLGGKLPKGVLLv---------GPPGTGKTlLARAvAGEA~VPFF~~sGSEF-------------- 373 (752)
T KOG0734|consen 319 IVEFL--KDPTKFTRLGGKLPKGVLLV---------GPPGTGKTLLARAVAGEAGVPFFYASGSEF-------------- 373 (752)
T ss_pred HHHHh--cCcHHhhhccCcCCCceEEe---------CCCCCchhHHHHHhhcccCCCeEeccccch--------------
Confidence 34455 3455554 444444599999 9999999999999987 45666667776
Q ss_pred HHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 132 LALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 132 ~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
-+||||---+|||++|..+ .+.+||||||||+|+++.+|.. .+.++.+||||.+|||+..++ +|||||
T Consensus 374 dEm~VGvGArRVRdLF~aA--------k~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNe-GiIvig 444 (752)
T KOG0734|consen 374 DEMFVGVGARRVRDLFAAA--------KARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNE-GIIVIG 444 (752)
T ss_pred hhhhhcccHHHHHHHHHHH--------HhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCC-ceEEEe
Confidence 6799999999999999864 7889999999999999999955 577999999999999999877 999999
Q ss_pred ccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
|||+|+.||+||.| |||++|.||+||..+|.+||+.|+.+++++.++|+..||+-|.|||||||+++|+.||+.|...
T Consensus 445 ATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~d 524 (752)
T KOG0734|consen 445 ATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLANLVNQAALKAAVD 524 (752)
T ss_pred ccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhc
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccc-----cc
Q psy11009 287 KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVT-----LA 361 (863)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~-----ll 361 (863)
+ ...|+|.||+.|-+++..+..++.....++-+.++||||.|||+|+.+++..-.- +.
T Consensus 525 g-----------------a~~VtM~~LE~akDrIlMG~ERks~~i~~eak~~TAyHE~GHAivA~yTk~A~PlhKaTImP 587 (752)
T KOG0734|consen 525 G-----------------AEMVTMKHLEFAKDRILMGPERKSMVIDEEAKKITAYHEGGHAIVALYTKGAMPLHKATIMP 587 (752)
T ss_pred C-----------------cccccHHHHhhhhhheeecccccccccChhhhhhhhhhccCceEEEeecCCCccccceeecc
Confidence 6 5589999999999999999999988888999999999999999999999976632 55
Q ss_pred cCCc-cccc-----cccccccchHHHHHHHhhhhhhhhhhccC------CcccchhhhhhhhhhccccccccccchhhHH
Q psy11009 362 TGPV-GLIS-----RDNLKHKSPIKMNFLSLVLPLLAEEHGNN------GISNDWHKTSALLVCTANHLIRNSVNLSSVT 429 (863)
Q Consensus 362 ~Gp~-g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (863)
.||. |.++ +++--++.++.-.+=...|||+|||+++. |||+||.++|.| ||
T Consensus 588 RG~sLG~t~~LPe~D~~~~Tk~q~LA~lDV~MGGRvAEELIfG~D~iTsGAssDl~qAT~l-----------------A~ 650 (752)
T KOG0734|consen 588 RGPSLGHTSQLPEKDRYSITKAQLLARLDVCMGGRVAEELIFGTDKITSGASSDLDQATKL-----------------AR 650 (752)
T ss_pred CCccccceeecCccchhhHHHHHHHHHHHHhhcchHHHHHhccCCcccccccchHHHHHHH-----------------HH
Confidence 5554 5554 77777888888888889999999999998 999999999999 99
Q ss_pred HHHHHhhcchhHHHHH
Q psy11009 430 AIMVEKIMTDKYAEIA 445 (863)
Q Consensus 430 ~~~~~~~ms~~l~~i~ 445 (863)
+|||++|||++++++.
T Consensus 651 ~MVt~fGMSd~vG~v~ 666 (752)
T KOG0734|consen 651 RMVTKFGMSDKVGPVT 666 (752)
T ss_pred HHHHHcCcccccccee
Confidence 9999999999999874
No 5
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-54 Score=500.69 Aligned_cols=342 Identities=24% Similarity=0.292 Sum_probs=306.5
Q ss_pred chhhccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHH
Q psy11009 55 NILTFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAI 130 (863)
Q Consensus 55 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~ 130 (863)
.|+.|| |.|.=|. |=.++.-|+||+ |.|||||||+||++|- -.|.|+-++.-
T Consensus 164 EiVdfL--k~p~ky~~lGakiPkGvlLv---------GpPGTGKTLLAkAvAgEA~VPFf~iSGS~F------------- 219 (596)
T COG0465 164 ELVDFL--KNPKKYQALGAKIPKGVLLV---------GPPGTGKTLLAKAVAGEAGVPFFSISGSDF------------- 219 (596)
T ss_pred HHHHHH--hCchhhHhcccccccceeEe---------cCCCCCcHHHHHHHhcccCCCceeccchhh-------------
Confidence 345565 4455554 556888899999 9999999999999986 78888888887
Q ss_pred HHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCe
Q psy11009 131 TLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPV 204 (863)
Q Consensus 131 ~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~V 204 (863)
..||||-=-.|||+.|.++ ...+||||||||+|++++.|.. .+.++.+||+|.+|||+.... +|
T Consensus 220 -VemfVGvGAsRVRdLF~qA--------kk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~-gv 289 (596)
T COG0465 220 -VEMFVGVGASRVRDLFEQA--------KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNE-GV 289 (596)
T ss_pred -hhhhcCCCcHHHHHHHHHh--------hccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCC-ce
Confidence 8899999999999999976 7889999999999999999942 455789999999999999654 99
Q ss_pred EEEEccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHH
Q psy11009 205 QYSIQKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMM 282 (863)
Q Consensus 205 ivIaATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~ 282 (863)
+||||||||+.||+||+| |||++|.|++||..+|.+|++.|+++.++++++|+..+|+.|+||||||++++|++|++.
T Consensus 290 iviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~ 369 (596)
T COG0465 290 IVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLANLLNEAALL 369 (596)
T ss_pred EEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHhhhHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccc---
Q psy11009 283 SMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVT--- 359 (863)
Q Consensus 283 air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~--- 359 (863)
|+|+. ...|++.||.+|++++..+..+......+.++..+||||+||+++++.+...+..
T Consensus 370 aar~n-----------------~~~i~~~~i~ea~drv~~G~erks~vise~ek~~~AYhEaghalv~~~l~~~d~v~Kv 432 (596)
T COG0465 370 AARRN-----------------KKEITMRDIEEAIDRVIAGPERKSRVISEAEKKITAYHEAGHALVGLLLPDADPVHKV 432 (596)
T ss_pred HHHhc-----------------CeeEeccchHHHHHHHhcCcCcCCcccChhhhcchHHHHHHHHHHHHhCCCCccccee
Confidence 99987 5689999999999999999999888888999999999999999999999987733
Q ss_pred --cccC-Cccccc-----cccccccchHHHHHHHhhhhhhhhhhccC-----Ccccchhhhhhhhhhccccccccccchh
Q psy11009 360 --LATG-PVGLIS-----RDNLKHKSPIKMNFLSLVLPLLAEEHGNN-----GISNDWHKTSALLVCTANHLIRNSVNLS 426 (863)
Q Consensus 360 --ll~G-p~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 426 (863)
+.+| -.|.+. +++++++.+++..+..+++||.|||++++ ||+||++++|.+
T Consensus 433 tIiPrG~alG~t~~~Pe~d~~l~sk~~l~~~i~~~lgGRaAEel~~g~e~ttGa~~D~~~at~~---------------- 496 (596)
T COG0465 433 TIIPRGRALGYTLFLPEEDKYLMSKEELLDRIDVLLGGRAAEELIFGYEITTGASNDLEKATDL---------------- 496 (596)
T ss_pred eeccCchhhcchhcCCccccccccHHHHHHHHHHHhCCcHhhhhhhcccccccchhhHHHHHHH----------------
Confidence 3333 112221 68999999999999999999999999988 999999999999
Q ss_pred hHHHHHHHhhcchhHHHHH----HHHHHHHHhhhcCCCccchh
Q psy11009 427 SVTAIMVEKIMTDKYAEIA----ESTTIARESSLTGNYDSACL 465 (863)
Q Consensus 427 ~~~~~~~~~~ms~~l~~i~----e~~~laRe~a~~gnY~~~~~ 465 (863)
||+|+||||||++|+++. +.+||||.+ ...||++..+
T Consensus 497 -ar~mVt~~Gms~~lG~v~~~~~~~~flg~~~-~~~~~Se~ta 537 (596)
T COG0465 497 -ARAMVTEYGMSAKLGPVAYEQVEGVFLGRYQ-KAKNYSEETA 537 (596)
T ss_pred -HHHhhhhcCcchhhCceehhhcccccccccc-cccCccHHHH
Confidence 999999999999999988 339999999 8889998875
No 6
>KOG0733|consensus
Probab=100.00 E-value=1.2e-51 Score=462.62 Aligned_cols=263 Identities=26% Similarity=0.338 Sum_probs=231.0
Q ss_pred hhhccceeeeec----------------chhhccccCCccccc-ccceeecceeEeeecccccccCcCCCcccccccccc
Q psy11009 43 SAMVDGFVYIFG----------------NILTFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPI 105 (863)
Q Consensus 43 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 105 (863)
||+-.||+-+=+ |..-.-|-|||++|. |-+.-.+|+||| |+|||||||+||++|
T Consensus 496 SakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~---------GPPGCGKTLlAKAVA 566 (802)
T KOG0733|consen 496 SAKREGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLC---------GPPGCGKTLLAKAVA 566 (802)
T ss_pred chhcccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEe---------CCCCccHHHHHHHHh
Confidence 678889886532 223356999999999 999999999999 999999999999998
Q ss_pred c---ccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc--
Q psy11009 106 K---MNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL-- 180 (863)
Q Consensus 106 ~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~-- 180 (863)
. +||||++||+| +.||||+||+.||++|.|+ ..-+||||||||+|+|..+|+.
T Consensus 567 NEag~NFisVKGPEL--------------lNkYVGESErAVR~vFqRA--------R~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 567 NEAGANFISVKGPEL--------------LNKYVGESERAVRQVFQRA--------RASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred hhccCceEeecCHHH--------------HHHHhhhHHHHHHHHHHHh--------hcCCCeEEEecchhhcCcccCCCC
Confidence 6 99999999999 9999999999999999997 7889999999999999999955
Q ss_pred -chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhc--cCCCCCcc
Q psy11009 181 -RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLK--EVKVDPAV 255 (863)
Q Consensus 181 -~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~--~~~l~~dv 255 (863)
..+.|++||||++|||+.... +|+|||||||||.||||++| |||+.+||++|+.++|.+||+.+++ +.+++.|+
T Consensus 625 s~~s~RvvNqLLtElDGl~~R~-gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dV 703 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLEERR-GVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDV 703 (802)
T ss_pred chhHHHHHHHHHHHhccccccc-ceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCccc
Confidence 667899999999999998877 99999999999999999999 9999999999999999999999998 78899999
Q ss_pred cHHHHhhhCC--CCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcc
Q psy11009 256 DLTHIASQLD--GYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENIT 333 (863)
Q Consensus 256 dl~~LA~~Te--G~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~ 333 (863)
|++.||..+. |||||||..+|++|++.|+|+.+....... .+..-......+|+.||.+|+++++|++++.+...|+
T Consensus 704 dl~eia~~~~c~gftGADLaaLvreAsi~AL~~~~~~~~~~~-~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd 782 (802)
T KOG0733|consen 704 DLDEIARNTKCEGFTGADLAALVREASILALRESLFEIDSSE-DDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYD 782 (802)
T ss_pred CHHHHhhcccccCCchhhHHHHHHHHHHHHHHHHHhhccccC-cccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHH
Confidence 9999999887 999999999999999999999765322111 1111111133588999999999999999999999997
Q ss_pred cccce
Q psy11009 334 VERIA 338 (863)
Q Consensus 334 ~~~~~ 338 (863)
...+.
T Consensus 783 ~l~k~ 787 (802)
T KOG0733|consen 783 RLNKS 787 (802)
T ss_pred HHhhh
Confidence 65543
No 7
>KOG0731|consensus
Probab=100.00 E-value=4.2e-51 Score=477.56 Aligned_cols=338 Identities=22% Similarity=0.277 Sum_probs=296.4
Q ss_pred hhccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHH
Q psy11009 57 LTFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITL 132 (863)
Q Consensus 57 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~ 132 (863)
..|| |-|.-|- |=.++.-|+||. |+||||||||||++|. ..|+|+.+.+. .
T Consensus 327 V~fL--KNP~~Y~~lGAKiPkGvLL~---------GPPGTGKTLLAKAiAGEAgVPF~svSGSEF--------------v 381 (774)
T KOG0731|consen 327 VKFL--KNPEQYQELGAKIPKGVLLV---------GPPGTGKTLLAKAIAGEAGVPFFSVSGSEF--------------V 381 (774)
T ss_pred HHHh--cCHHHHHHcCCcCcCceEEE---------CCCCCcHHHHHHHHhcccCCceeeechHHH--------------H
Confidence 3444 4577777 888888899999 9999999999999998 89999999999 8
Q ss_pred HhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc-------chhHhHHHHHHHHhhccCCCCCCeE
Q psy11009 133 ALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL-------RGSKTFRTLCIHKYRLLTFPSTPVQ 205 (863)
Q Consensus 133 ~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~-------~~~~~v~n~lL~~ld~~~~~~~~Vi 205 (863)
+|+||---.|+|++|..+ ...+||||||||||+++.+|.. ++..+.+||||.+|||+... .+||
T Consensus 382 E~~~g~~asrvr~lf~~a--------r~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~-~~vi 452 (774)
T KOG0731|consen 382 EMFVGVGASRVRDLFPLA--------RKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS-KGVI 452 (774)
T ss_pred HHhcccchHHHHHHHHHh--------hccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC-CcEE
Confidence 999999999999999865 8889999999999999999931 55688999999999999877 4999
Q ss_pred EEEccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHH
Q psy11009 206 YSIQKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMM 282 (863)
Q Consensus 206 vIaATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~ 282 (863)
|+||||||+.||+|++| |||++|+|++||..+|.+||+.|+++.+++ .++|+..||.+|+|||||||.++|++|++.
T Consensus 453 ~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~ 532 (774)
T KOG0731|consen 453 VLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALL 532 (774)
T ss_pred EEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHH
Confidence 99999999999999999 999999999999999999999999998886 789999999999999999999999999999
Q ss_pred HHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccc--c
Q psy11009 283 SMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVT--L 360 (863)
Q Consensus 283 air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~--l 360 (863)
|+|+. ...|+..||+.|++++..+...+......+++...||||+|||+++|++.+.+.- +
T Consensus 533 a~r~~-----------------~~~i~~~~~~~a~~Rvi~G~~~~~~~~~~~~~~~~a~~eagha~~g~~l~~~dpl~kv 595 (774)
T KOG0731|consen 533 AARKG-----------------LREIGTKDLEYAIERVIAGMEKKSRVLSLEEKKTVAYHEAGHAVVGWLLEHADPLLKV 595 (774)
T ss_pred HHHhc-----------------cCccchhhHHHHHHHHhccccccchhcCHhhhhhhhhhhccchhhhccccccCcceeE
Confidence 99987 5589999999999999999888888888889999999999999999999776632 1
Q ss_pred ccCCccc----cc----cccccccchHHHHHHHhhhhhhhhhhccC-----Ccccchhhhhhhhhhccccccccccchhh
Q psy11009 361 ATGPVGL----IS----RDNLKHKSPIKMNFLSLVLPLLAEEHGNN-----GISNDWHKTSALLVCTANHLIRNSVNLSS 427 (863)
Q Consensus 361 l~Gp~g~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (863)
-.-| |+ .- ++++.++.++++.++..+|||+|||+.++ ||.+||+|+|.+
T Consensus 596 sIiP-GqalG~a~~~P~~~~l~sk~ql~~rm~m~LGGRaAEev~fg~~iTtga~ddl~kvT~~----------------- 657 (774)
T KOG0731|consen 596 SIIP-GQALGYAQYLPTDDYLLSKEQLFDRMVMALGGRAAEEVVFGSEITTGAQDDLEKVTKI----------------- 657 (774)
T ss_pred Eecc-CCccceEEECCcccccccHHHHHHHHHHHhCcchhhheecCCccCchhhccHHHHHHH-----------------
Confidence 1112 33 11 66999999999999999999999999994 999999999999
Q ss_pred HHHHHHHhhcchhHHHHHHHHHHHHHhhhcCCCccc
Q psy11009 428 VTAIMVEKIMTDKYAEIAESTTIARESSLTGNYDSA 463 (863)
Q Consensus 428 ~~~~~~~~~ms~~l~~i~e~~~laRe~a~~gnY~~~ 463 (863)
|++||+.|||+++++.++-....+=++.....|+..
T Consensus 658 A~~~V~~~Gms~kig~~~~~~~~~~~~~~~~p~s~~ 693 (774)
T KOG0731|consen 658 ARAMVASFGMSEKIGPISFQMLLPGDESFRKPYSEK 693 (774)
T ss_pred HHHHHHHcCcccccCceeccCcccccccccCccchh
Confidence 999999999999999998633333233334444443
No 8
>KOG0730|consensus
Probab=100.00 E-value=6.1e-50 Score=455.60 Aligned_cols=232 Identities=28% Similarity=0.350 Sum_probs=219.6
Q ss_pred hccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHH
Q psy11009 58 TFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLA 133 (863)
Q Consensus 58 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~ 133 (863)
--.|-|+|+.|. +=+....|+|+| |+||||||++||++|. |||||+++|+| ++
T Consensus 450 V~~p~~~pe~F~r~Gi~ppkGVLly---------GPPGC~KT~lAkalAne~~~nFlsvkgpEL--------------~s 506 (693)
T KOG0730|consen 450 VEWPLKHPEKFARFGISPPKGVLLY---------GPPGCGKTLLAKALANEAGMNFLSVKGPEL--------------FS 506 (693)
T ss_pred HhhhhhchHHHHHhcCCCCceEEEE---------CCCCcchHHHHHHHhhhhcCCeeeccCHHH--------------HH
Confidence 357999999999 999999999999 9999999999999998 99999999999 99
Q ss_pred hhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEcc
Q psy11009 134 LTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQK 210 (863)
Q Consensus 134 ~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaAT 210 (863)
+|||+||+++|++|.++ ....||||||||+|+++..|++ +..+||+++||++|||+.... +|+|||||
T Consensus 507 k~vGeSEr~ir~iF~kA--------R~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k-~V~ViAAT 577 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKA--------RQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALK-NVLVIAAT 577 (693)
T ss_pred HhcCchHHHHHHHHHHH--------hhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccC-cEEEEecc
Confidence 99999999999999986 7888999999999999999954 668999999999999999876 89999999
Q ss_pred CCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhh
Q psy11009 211 GIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKI 288 (863)
Q Consensus 211 N~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~ 288 (863)
|||+.||+|++| |||+.||||+||.++|.+||+.+++++++.+++|++.||..|+|||||||.++|++|++.|+++.+
T Consensus 578 NRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i 657 (693)
T KOG0730|consen 578 NRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIVAVCQEAALLALRESI 657 (693)
T ss_pred CChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhc
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhccccc
Q psy11009 289 IGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVER 336 (863)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~ 336 (863)
. -..|+.+||++|+..++++++..+++.|+...
T Consensus 658 ~---------------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa 690 (693)
T KOG0730|consen 658 E---------------ATEITWQHFEEALKAVRPSLTSELLEKYEDFA 690 (693)
T ss_pred c---------------cccccHHHHHHHHHhhcccCCHHHHHHHHHHh
Confidence 4 34799999999999999999999999997543
No 9
>KOG0736|consensus
Probab=100.00 E-value=1e-49 Score=456.34 Aligned_cols=248 Identities=26% Similarity=0.316 Sum_probs=224.6
Q ss_pred ccccCCcccccccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 59 FLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
-||=|.|+||..-.|-|+|+||| |.|||||||+||+||. .||+|+||||| +.||
T Consensus 689 qlPL~hpeLfssglrkRSGILLY---------GPPGTGKTLlAKAVATEcsL~FlSVKGPEL--------------LNMY 745 (953)
T KOG0736|consen 689 QLPLKHPELFSSGLRKRSGILLY---------GPPGTGKTLLAKAVATECSLNFLSVKGPEL--------------LNMY 745 (953)
T ss_pred cCcccChhhhhccccccceeEEE---------CCCCCchHHHHHHHHhhceeeEEeecCHHH--------------HHHH
Confidence 48999999999999999999999 9999999999999998 99999999999 9999
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc-----chhHhHHHHHHHHhhccCC-CCCCeEEEEc
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL-----RGSKTFRTLCIHKYRLLTF-PSTPVQYSIQ 209 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~-----~~~~~v~n~lL~~ld~~~~-~~~~VivIaA 209 (863)
||+||.|||++|+|+ .+++||||||||+|+|+.+|+. +..+|+++|||.+|||+.. ....|+||||
T Consensus 746 VGqSE~NVR~VFerA--------R~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGA 817 (953)
T KOG0736|consen 746 VGQSEENVREVFERA--------RSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGA 817 (953)
T ss_pred hcchHHHHHHHHHHh--------hccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEec
Confidence 999999999999997 8999999999999999999933 6779999999999999986 6669999999
Q ss_pred cCCCCCccHHHhh--ccceEEEecCCC-HHHHHHHHHHHhccCCCCCcccHHHHhhhCC-CCCHHHHHHHHHHHHHHHHH
Q psy11009 210 KGIPWDIDEALRR--RLEKRIYIPLPS-KAGREALLKINLKEVKVDPAVDLTHIASQLD-GYSGADITNVCRDASMMSMR 285 (863)
Q Consensus 210 TN~p~~LD~AllR--RFD~~I~i~lPd-~~~R~~IL~~~l~~~~l~~dvdl~~LA~~Te-G~SGADI~~lv~~Aal~air 285 (863)
|||||+|||||+| |||+-+|++.++ .+.+..||+...+++.++.++|+.+||++|+ .|||||+..+|-+|.+.|++
T Consensus 818 TNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlYsLCSdA~l~Aik 897 (953)
T KOG0736|consen 818 TNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIK 897 (953)
T ss_pred CCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999885 8889999999999999999999999999996 89999999999999999999
Q ss_pred hhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccc
Q psy11009 286 RKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERI 337 (863)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~ 337 (863)
|.+.......+.....+.....|+++||++|+.+..|++++.|+.+|+..|.
T Consensus 898 R~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~ 949 (953)
T KOG0736|consen 898 RTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRA 949 (953)
T ss_pred HHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHH
Confidence 9765443332222223334557999999999999999999999999986554
No 10
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=7.2e-48 Score=466.54 Aligned_cols=399 Identities=33% Similarity=0.479 Sum_probs=323.3
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|-++|.+|. +-+....|+|+| |.||||||++|+++++ .+|+.+.++.+ .+.|
T Consensus 196 ~~~~~~~~~~~~gi~~~~giLL~---------GppGtGKT~laraia~~~~~~~i~i~~~~i--------------~~~~ 252 (733)
T TIGR01243 196 LPMKHPELFEHLGIEPPKGVLLY---------GPPGTGKTLLAKAVANEAGAYFISINGPEI--------------MSKY 252 (733)
T ss_pred HHhhCHHHHHhcCCCCCceEEEE---------CCCCCChHHHHHHHHHHhCCeEEEEecHHH--------------hccc
Confidence 4678999998 877888899999 9999999999999998 45666666666 5678
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccCC
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI 212 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~ 212 (863)
+|.++.+++.+|+.+ ....||||||||+|+++.+|+. ....+++++|+..||++.... .|+||+|||+
T Consensus 253 ~g~~~~~l~~lf~~a--------~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~-~vivI~atn~ 323 (733)
T TIGR01243 253 YGESEERLREIFKEA--------EENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRG-RVIVIGATNR 323 (733)
T ss_pred ccHHHHHHHHHHHHH--------HhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCC-CEEEEeecCC
Confidence 999999999999864 5677999999999999998854 345789999999999987654 8999999999
Q ss_pred CCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcC
Q psy11009 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG 290 (863)
Q Consensus 213 p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~ 290 (863)
|+.||+|++| |||+.|++++|+.++|.+||+.+++.+++..+++++.+|..|.||+|+||..+|++|++.++++.+..
T Consensus 324 ~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~ 403 (733)
T TIGR01243 324 PDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIRE 403 (733)
T ss_pred hhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999 99999999999999999999999999988888999999999999999999999999999988874200
Q ss_pred CChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccccccCCcccccc
Q psy11009 291 LTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLISR 370 (863)
Q Consensus 291 ~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~ll~Gp~g~~~~ 370 (863)
. . .+ +
T Consensus 404 ~-----------------------------~----------------------------------~~------~------ 408 (733)
T TIGR01243 404 G-----------------------------K----------------------------------IN------F------ 408 (733)
T ss_pred c-----------------------------c----------------------------------cc------c------
Confidence 0 0 00 0
Q ss_pred ccccccchHHHHHHHhhhhhhhhhhccCCcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchhHHHHHHHHHH
Q psy11009 371 DNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTI 450 (863)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~l~~i~e~~~l 450 (863)
. ++ + + + .++.+
T Consensus 409 ----------------~----~~---------~------i---------------------------~---~~~~~---- 419 (733)
T TIGR01243 409 ----------------E----AE---------E------I---------------------------P---AEVLK---- 419 (733)
T ss_pred ----------------c----cc---------c------c---------------------------c---chhcc----
Confidence 0 00 0 0 0 00000
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCC
Q psy11009 451 ARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNSR 530 (863)
Q Consensus 451 aRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~tl~~fk~~~~~~~~~~~~~~ 530 (863)
.. .... .++...++ .-.
T Consensus 420 --------------------------------~~--------------~v~~---~df~~Al~---~v~----------- 436 (733)
T TIGR01243 420 --------------------------------EL--------------KVTM---KDFMEALK---MVE----------- 436 (733)
T ss_pred --------------------------------cc--------------cccH---HHHHHHHh---hcc-----------
Confidence 00 0000 00000000 000
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccccCCcCCCCCCCCCCCCCCccccCCCCCCCC
Q psy11009 531 PNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPAN 610 (863)
Q Consensus 531 ~~~~~~~~ss~~~~~~~~~~~dpdvw~~p~~~d~~~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~ss~~r~~~~~~~ 610 (863)
| +. .+
T Consensus 437 p----------------------------s~-~~---------------------------------------------- 441 (733)
T TIGR01243 437 P----------------------------SA-IR---------------------------------------------- 441 (733)
T ss_pred c----------------------------cc-cc----------------------------------------------
Confidence 0 00 00
Q ss_pred CCCCCCCCCcccchhhhccCCCCchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccCCCChH
Q psy11009 611 NKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDND 690 (863)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~s~ds~~~~~~~~~~~~~~~s~~~n~~~~n~~~~~~~~~~~~~~~~~~~~~k~~~~g~d~~ 690 (863)
T Consensus 442 -------------------------------------------------------------------------------- 441 (733)
T TIGR01243 442 -------------------------------------------------------------------------------- 441 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCc
Q psy11009 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTT 769 (863)
Q Consensus 691 ~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~ 769 (863)
......|..+|++++|++.+++.|.+.+.+|+.+++.+...+ .+++|+|||||||||||++|+++|++++.+
T Consensus 442 -------~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 442 -------EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred -------hhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 000112356799999999999999999999999999999887 778999999999999999999999999999
Q ss_pred EEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q psy11009 770 FFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKV 849 (863)
Q Consensus 770 ~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~ 849 (863)
|+.++++++.++|+|++++.++.+|..|+...||||||||||.+++.|+....+....+++++||..||++... ..
T Consensus 515 fi~v~~~~l~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~----~~ 590 (733)
T TIGR01243 515 FIAVRGPEILSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQEL----SN 590 (733)
T ss_pred EEEEehHHHhhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCC----CC
Confidence 99999999999999999999999999999999999999999999999876655667889999999999998653 35
Q ss_pred eEEEEecCCCCCCC
Q psy11009 850 VMVLAATNFPWEGA 863 (863)
Q Consensus 850 VvVIaTTN~P~~ID 863 (863)
|+||+|||+|+.||
T Consensus 591 v~vI~aTn~~~~ld 604 (733)
T TIGR01243 591 VVVIAATNRPDILD 604 (733)
T ss_pred EEEEEeCCChhhCC
Confidence 99999999999987
No 11
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=100.00 E-value=9.2e-49 Score=466.49 Aligned_cols=333 Identities=18% Similarity=0.243 Sum_probs=282.6
Q ss_pred ccceeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhc
Q psy11009 70 LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNR 149 (863)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~ 149 (863)
+-..+..|+|++ |.||||||++++++++. ...|.+. +.++.-.++++|..+.++|.+|..
T Consensus 180 ~~~~~~~gill~---------G~~G~GKt~~~~~~a~~----~~~~f~~-------is~~~~~~~~~g~~~~~~~~~f~~ 239 (644)
T PRK10733 180 LGGKIPKGVLMV---------GPPGTGKTLLAKAIAGE----AKVPFFT-------ISGSDFVEMFVGVGASRVRDMFEQ 239 (644)
T ss_pred cCCCCCCcEEEE---------CCCCCCHHHHHHHHHHH----cCCCEEE-------EehHHhHHhhhcccHHHHHHHHHH
Confidence 334556799999 99999999999999984 3333331 122223568899999999999986
Q ss_pred ccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhh-
Q psy11009 150 GFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRR- 222 (863)
Q Consensus 150 ~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllR- 222 (863)
+ ....||||||||+|+++.+|.. ....+++|+||.+||++.... +|+||||||+|+.||+|++|
T Consensus 240 a--------~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~-~vivIaaTN~p~~lD~Al~Rp 310 (644)
T PRK10733 240 A--------KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE-GIIVIAATNRPDVLDPALLRP 310 (644)
T ss_pred H--------HhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC-CeeEEEecCChhhcCHHHhCC
Confidence 4 5568999999999999998854 234678999999999997655 89999999999999999999
Q ss_pred -ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCc
Q psy11009 223 -RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPK 301 (863)
Q Consensus 223 -RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~ 301 (863)
|||++|+|++||.++|.+||+.|+++.++..++|+..||+.|.|||||||+++|++|+..|+|+.
T Consensus 311 gRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~-------------- 376 (644)
T PRK10733 311 GRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN-------------- 376 (644)
T ss_pred cccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC--------------
Confidence 99999999999999999999999999999989999999999999999999999999999999875
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccc-----cccCCc-cccc-----c
Q psy11009 302 EELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVT-----LATGPV-GLIS-----R 370 (863)
Q Consensus 302 ~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~-----ll~Gp~-g~~~-----~ 370 (863)
...|+++||..|++++.++...........++..++|||+|||+|++++...+.. ..+|.. |.+. +
T Consensus 377 ---~~~i~~~d~~~a~~~v~~g~~~~~~~~~~~~~~~~a~he~gha~~~~~~~~~~~~~~v~i~prg~~~g~~~~~~~~~ 453 (644)
T PRK10733 377 ---KRVVSMVEFEKAKDKIMMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLPEGD 453 (644)
T ss_pred ---CCcccHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHHHHccCCCceeEEEEeccCCCcceeEECCCcc
Confidence 5589999999999999988776655555678899999999999999998755422 223332 3333 3
Q ss_pred ccccccchHHHHHHHhhhhhhhhhhccC------CcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchhHHHH
Q psy11009 371 DNLKHKSPIKMNFLSLVLPLLAEEHGNN------GISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEI 444 (863)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~l~~i 444 (863)
....++..+..++..+++||+|||++++ ||+|||+++|.| |+.||++||||++++.+
T Consensus 454 ~~~~~~~~l~~~i~~~lgGraAE~~~~g~~~~ttGa~~Dl~~AT~l-----------------A~~mv~~~Gms~~lg~~ 516 (644)
T PRK10733 454 AISASRQKLESQISTLYGGRLAEEIIYGPEHVSTGASNDIKVATNL-----------------ARNMVTQWGFSEKLGPL 516 (644)
T ss_pred cccccHHHHHHHHHHHHhhHHHHHHHhCCCCCCCCcHHHHHHHHHH-----------------HHHHHHHhCCCccccch
Confidence 3456788999999999999999999984 999999999999 99999999999999887
Q ss_pred H-----HHHHHHHHhhhcCCCccchh
Q psy11009 445 A-----ESTTIARESSLTGNYDSACL 465 (863)
Q Consensus 445 ~-----e~~~laRe~a~~gnY~~~~~ 465 (863)
. +++++||+++...+|+++..
T Consensus 517 ~~~~~~~~~~lg~~~~~~~~~s~~~~ 542 (644)
T PRK10733 517 LYAEEEGEVFLGRSVAKAKHMSDETA 542 (644)
T ss_pred hhcccccccccccccccccccCHHHH
Confidence 5 57899999999899998764
No 12
>CHL00176 ftsH cell division protein; Validated
Probab=100.00 E-value=3.3e-47 Score=449.61 Aligned_cols=338 Identities=20% Similarity=0.260 Sum_probs=279.4
Q ss_pred CCccccc-ccceeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHH
Q psy11009 63 KYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLN 141 (863)
Q Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~ 141 (863)
+.|..|. +-.....|+|+| |.||||||++|+++++. ...|.++. .++.-.++++|....
T Consensus 203 k~~~~~~~~g~~~p~gVLL~---------GPpGTGKT~LAralA~e----~~~p~i~i-------s~s~f~~~~~g~~~~ 262 (638)
T CHL00176 203 KKPERFTAVGAKIPKGVLLV---------GPPGTGKTLLAKAIAGE----AEVPFFSI-------SGSEFVEMFVGVGAA 262 (638)
T ss_pred hCHHHHhhccCCCCceEEEE---------CCCCCCHHHHHHHHHHH----hCCCeeec-------cHHHHHHHhhhhhHH
Confidence 3455544 445567799999 99999999999999984 23444321 222235678999999
Q ss_pred HHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCC
Q psy11009 142 LYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWD 215 (863)
Q Consensus 142 ~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~ 215 (863)
++|.+|.++ ....||||||||+|+++..|+. ....+++++||.+||++.... +|+||||||+|+.
T Consensus 263 ~vr~lF~~A--------~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~-~ViVIaaTN~~~~ 333 (638)
T CHL00176 263 RVRDLFKKA--------KENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNK-GVIVIAATNRVDI 333 (638)
T ss_pred HHHHHHHHH--------hcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCC-CeeEEEecCchHh
Confidence 999999875 6678999999999999988843 345678999999999987654 8999999999999
Q ss_pred ccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCCh
Q psy11009 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTP 293 (863)
Q Consensus 216 LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~ 293 (863)
||+|++| |||++|+|++||.++|.+||+.|+++..+..++++..||..|.||||+||+++|++|++.++|+.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~------ 407 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLSPDVSLELIARRTPGFSGADLANLLNEAAILTARRK------ 407 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC------
Confidence 9999999 99999999999999999999999988777788999999999999999999999999999998876
Q ss_pred hhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccc-----cccC-Cccc
Q psy11009 294 EQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVT-----LATG-PVGL 367 (863)
Q Consensus 294 ~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~-----ll~G-p~g~ 367 (863)
...|+++||..|+.++..+.....+ ...++++++||||+||||+++++...+.. ...| ..|.
T Consensus 408 -----------~~~It~~dl~~Ai~rv~~g~~~~~~-~~~~~~~~vA~hEaGhA~v~~~l~~~~~v~kvtI~prg~~~G~ 475 (638)
T CHL00176 408 -----------KATITMKEIDTAIDRVIAGLEGTPL-EDSKNKRLIAYHEVGHAIVGTLLPNHDPVQKVTLIPRGQAKGL 475 (638)
T ss_pred -----------CCCcCHHHHHHHHHHHHhhhccCcc-ccHHHHHHHHHHhhhhHHHHhhccCCCceEEEEEeecCCCCCc
Confidence 4579999999999998665443322 34567888999999999999998765522 2222 2343
Q ss_pred cc-----cccccccchHHHHHHHhhhhhhhhhhccC------CcccchhhhhhhhhhccccccccccchhhHHHHHHHhh
Q psy11009 368 IS-----RDNLKHKSPIKMNFLSLVLPLLAEEHGNN------GISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKI 436 (863)
Q Consensus 368 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 436 (863)
+. +.++.++..+..++..+++||+|||++++ ||+|||+++|.| |+.|+++||
T Consensus 476 ~~~~p~~~~~~~t~~~l~~~i~~~LgGraAE~~~fg~~~~~~Ga~~Dl~~AT~i-----------------A~~mv~~~G 538 (638)
T CHL00176 476 TWFTPEEDQSLVSRSQILARIVGALGGRAAEEVVFGSTEVTTGASNDLQQVTNL-----------------ARQMVTRFG 538 (638)
T ss_pred eEecCCcccccccHHHHHHHHHHHhhhHHHHHHhcCCCCcCCCchhHHHHHHHH-----------------HHHHHHHhC
Confidence 33 55778999999999999999999999884 999999999999 999999999
Q ss_pred cchhHHHHH-----H-HHHHHHHhhhcCCCccchh
Q psy11009 437 MTDKYAEIA-----E-STTIARESSLTGNYDSACL 465 (863)
Q Consensus 437 ms~~l~~i~-----e-~~~laRe~a~~gnY~~~~~ 465 (863)
|+ .++++. + ..++||+++....|++..+
T Consensus 539 m~-~~g~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 572 (638)
T CHL00176 539 MS-SIGPISLESNNSTDPFLGRFMQRNSEYSEEIA 572 (638)
T ss_pred CC-cCCceeecCCCCcccccccccccccCcCHHHH
Confidence 99 488775 2 6889999888888987663
No 13
>KOG0735|consensus
Probab=100.00 E-value=2.4e-47 Score=433.18 Aligned_cols=199 Identities=26% Similarity=0.361 Sum_probs=192.2
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
-+|+|||.+|. .|+|.|+|+||| |.||||||++|.++|. |||||+|||+| +++
T Consensus 684 ~~P~kyp~if~~~plr~~~giLLy---------GppGcGKT~la~a~a~~~~~~fisvKGPEl--------------L~K 740 (952)
T KOG0735|consen 684 EWPSKYPQIFANCPLRLRTGILLY---------GPPGCGKTLLASAIASNSNLRFISVKGPEL--------------LSK 740 (952)
T ss_pred hccccchHHHhhCCcccccceEEE---------CCCCCcHHHHHHHHHhhCCeeEEEecCHHH--------------HHH
Confidence 57999999999 999999999999 9999999999999998 99999999999 999
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccC
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKG 211 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN 211 (863)
|+|.||++||.+|.|+ ++.+||||||||||+++.+|+. |.++||+||||++|||.+... +|+|+|||.
T Consensus 741 yIGaSEq~vR~lF~rA--------~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~-GV~i~aaTs 811 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERA--------QSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLD-GVYILAATS 811 (952)
T ss_pred HhcccHHHHHHHHHHh--------hccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccc-eEEEEEecC
Confidence 9999999999999997 9999999999999999999933 899999999999999999876 999999999
Q ss_pred CCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhc
Q psy11009 212 IPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKII 289 (863)
Q Consensus 212 ~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~ 289 (863)
|||+|||||+| |||+.+|+++|+..+|.+||+........+.++|++.+|.+|+|||||||..++.+|.+.|+++...
T Consensus 812 RpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~ 891 (952)
T KOG0735|consen 812 RPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILK 891 (952)
T ss_pred CccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999999999999888999999999999999999999999999999999998754
No 14
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.9e-47 Score=407.30 Aligned_cols=216 Identities=25% Similarity=0.392 Sum_probs=202.7
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
-||=|-|++|. +=|....|+||| |+|||||||+||++|. -+||-+++++| -.+
T Consensus 168 ELPL~~PElF~~~GI~PPKGVLLY---------GPPGTGKTLLAkAVA~~T~AtFIrvvgSEl--------------VqK 224 (406)
T COG1222 168 ELPLKNPELFEELGIDPPKGVLLY---------GPPGTGKTLLAKAVANQTDATFIRVVGSEL--------------VQK 224 (406)
T ss_pred cccccCHHHHHHcCCCCCCceEee---------CCCCCcHHHHHHHHHhccCceEEEeccHHH--------------HHH
Confidence 58999999999 999999999999 9999999999999998 89999999999 889
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
|||+.-+.||.+|.=+ ...+||||||||||+|+.+|.. .+..|..-+||+|||||...+ +|=||+
T Consensus 225 YiGEGaRlVRelF~lA--------rekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~-nvKVI~ 295 (406)
T COG1222 225 YIGEGARLVRELFELA--------REKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG-NVKVIM 295 (406)
T ss_pred HhccchHHHHHHHHHH--------hhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC-CeEEEE
Confidence 9999999999999754 7788999999999999999932 334567778999999999766 999999
Q ss_pred ccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
|||||+.|||||+| ||||+|+||+||.++|.+||++|.+++.+..++|++.||+.|+|+|||||+++|.+|.+.|+|+
T Consensus 296 ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~ 375 (406)
T COG1222 296 ATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLKAICTEAGMFAIRE 375 (406)
T ss_pred ecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHh
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCC
Q psy11009 287 KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKS 323 (863)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ps 323 (863)
. +..||++||+.|+.++...
T Consensus 376 ~-----------------R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 376 R-----------------RDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred c-----------------cCeecHHHHHHHHHHHHhc
Confidence 7 5689999999999998654
No 15
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=100.00 E-value=7.7e-46 Score=430.69 Aligned_cols=374 Identities=23% Similarity=0.293 Sum_probs=299.7
Q ss_pred CCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhhhhh
Q psy11009 63 KYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALTVGS 138 (863)
Q Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~ 138 (863)
++|..|. +......|+|+| |.||||||++|+++++ ++|+++....+ .++++|.
T Consensus 75 ~~~~~~~~~g~~~~~giLL~---------GppGtGKT~la~alA~~~~~~~~~i~~~~~--------------~~~~~g~ 131 (495)
T TIGR01241 75 KNPSKFTKLGAKIPKGVLLV---------GPPGTGKTLLAKAVAGEAGVPFFSISGSDF--------------VEMFVGV 131 (495)
T ss_pred HCHHHHHhcCCCCCCcEEEE---------CCCCCCHHHHHHHHHHHcCCCeeeccHHHH--------------HHHHhcc
Confidence 6777776 666777899999 9999999999999998 44444444433 6789999
Q ss_pred HHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEccCC
Q psy11009 139 SLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI 212 (863)
Q Consensus 139 se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~ 212 (863)
++.+++.+|..+ ....||||||||+|+++.+|.. ....+++++||.+||++.... +|+||+|||+
T Consensus 132 ~~~~l~~~f~~a--------~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~-~v~vI~aTn~ 202 (495)
T TIGR01241 132 GASRVRDLFEQA--------KKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNT-GVIVIAATNR 202 (495)
T ss_pred cHHHHHHHHHHH--------HhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCC-CeEEEEecCC
Confidence 999999999864 5678999999999999988854 234688999999999987655 8999999999
Q ss_pred CCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcC
Q psy11009 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG 290 (863)
Q Consensus 213 p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~ 290 (863)
|+.||+|++| |||++|+|++||.++|.+||+.|+++.++..++++..+|..|.||||+||+++|++|++.++|+.
T Consensus 203 ~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~--- 279 (495)
T TIGR01241 203 PDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLANLLNEAALLAARKN--- 279 (495)
T ss_pred hhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 9999999999 99999999999999999999999998888788999999999999999999999999999988875
Q ss_pred CChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccc--c---ccCCc
Q psy11009 291 LTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVT--L---ATGPV 365 (863)
Q Consensus 291 ~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~--l---l~Gp~ 365 (863)
...|+.+||..|+.++..+...........+++.+|+||+|||++++.+...... + ..|..
T Consensus 280 --------------~~~i~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~A~hEaGhAlv~~~l~~~~~v~~vsi~prg~~ 345 (495)
T TIGR01241 280 --------------KTEITMNDIEEAIDRVIAGPEKKSRVISEKEKKLVAYHEAGHALVGLLLKDADPVHKVTIIPRGQA 345 (495)
T ss_pred --------------CCCCCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHhHHHHHHhcCCCCceEEEEEeecCCc
Confidence 4579999999999999877655544445567788999999999999998654322 1 12322
Q ss_pred -cccc-----cccccccchHHHHHHHhhhhhhhhhhccC----CcccchhhhhhhhhhccccccccccchhhHHHHHHHh
Q psy11009 366 -GLIS-----RDNLKHKSPIKMNFLSLVLPLLAEEHGNN----GISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEK 435 (863)
Q Consensus 366 -g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (863)
|.+. +.+..++..+...+..+++|++|||+.++ |+++||+++|.+ |+.|+++|
T Consensus 346 ~G~~~~~~~~~~~~~t~~~l~~~i~v~LaGraAE~~~~G~~s~Ga~~Dl~~At~l-----------------A~~mv~~~ 408 (495)
T TIGR01241 346 LGYTQFLPEEDKYLYTKSQLLAQIAVLLGGRAAEEIIFGEVTTGASNDIKQATNI-----------------ARAMVTEW 408 (495)
T ss_pred cceEEecCccccccCCHHHHHHHHHHHhhHHHHHHHHhcCCCCCchHHHHHHHHH-----------------HHHHHHHh
Confidence 3332 24677889999999999999999999887 999999999999 99999999
Q ss_pred hcchhHHHHH-----HHHHHHHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy11009 436 IMTDKYAEIA-----ESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQS 510 (863)
Q Consensus 436 ~ms~~l~~i~-----e~~~laRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~ 510 (863)
||++.++.+. ....++++++....|++....- +-+++++.+.. .++.++.-|.+--..+..|..
T Consensus 409 Gm~~~~g~~~~~~~~~~~~l~~~~~~~~~~s~~~~~~--id~~v~~lL~~---------a~~ra~~lL~~~~~~l~~la~ 477 (495)
T TIGR01241 409 GMSDKLGPVAYGSDGGDVFLGRGFAKAKEYSEETARE--IDEEVKRIIEE---------AYKRAKQILTENRDELELLAK 477 (495)
T ss_pred CCCcccCceeeccCccccccccccccccccCHHHHHH--HHHHHHHHHHH---------HHHHHHHHHHHhHHHHHHHHH
Confidence 9998777665 2356777887777887766421 22223333322 244566666666666666655
Q ss_pred HHH
Q psy11009 511 MIR 513 (863)
Q Consensus 511 tl~ 513 (863)
.|-
T Consensus 478 ~Ll 480 (495)
T TIGR01241 478 ALL 480 (495)
T ss_pred HHH
Confidence 554
No 16
>KOG0738|consensus
Probab=100.00 E-value=1e-44 Score=390.94 Aligned_cols=246 Identities=39% Similarity=0.530 Sum_probs=221.4
Q ss_pred ccccCCcccccccceeecceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 59 FLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
.||=.||+.|.==.+---|+|++ |+||||||||||++|.. -|..+--- .-.|+|
T Consensus 229 vlPi~mPe~F~GirrPWkgvLm~---------GPPGTGKTlLAKAvATEc~tTFFNVSss--------------tltSKw 285 (491)
T KOG0738|consen 229 VLPIWMPEFFKGIRRPWKGVLMV---------GPPGTGKTLLAKAVATECGTTFFNVSSS--------------TLTSKW 285 (491)
T ss_pred hhhhhhHHHHhhcccccceeeee---------CCCCCcHHHHHHHHHHhhcCeEEEechh--------------hhhhhh
Confidence 68999999998223334599999 99999999999999983 23223223 337889
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc----chhHhHHHHHHHHhhccCCCCCC---eEEEE
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL----RGSKTFRTLCIHKYRLLTFPSTP---VQYSI 208 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~----~~~~~v~n~lL~~ld~~~~~~~~---VivIa 208 (863)
=|+||+.||-+|+=+ ..-+|++|||||||+|+++|++ +.++|+.++||.||||+.....+ |+|+|
T Consensus 286 RGeSEKlvRlLFemA--------RfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLA 357 (491)
T KOG0738|consen 286 RGESEKLVRLLFEMA--------RFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLA 357 (491)
T ss_pred ccchHHHHHHHHHHH--------HHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEe
Confidence 999999999999865 5567999999999999999965 55789999999999999987667 99999
Q ss_pred ccCCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhh
Q psy11009 209 QKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKI 288 (863)
Q Consensus 209 ATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~ 288 (863)
|||+||+||.||+|||+++||||+||.++|..+|+..|+...++++++++.||..++||||+||.++|++|++.++||.+
T Consensus 358 ATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~nvCreAsm~~mRR~i 437 (491)
T KOG0738|consen 358 ATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITNVCREASMMAMRRKI 437 (491)
T ss_pred ccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccc
Q psy11009 289 IGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVE 335 (863)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~ 335 (863)
.++....+.....+....||+..||+.|+++++|+++..++++|++.
T Consensus 438 ~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW 484 (491)
T KOG0738|consen 438 AGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKW 484 (491)
T ss_pred hcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHH
Confidence 99999999888888888999999999999999999999999999753
No 17
>KOG0736|consensus
Probab=100.00 E-value=5e-42 Score=393.41 Aligned_cols=160 Identities=46% Similarity=0.705 Sum_probs=149.9
Q ss_pred cCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccccc
Q psy11009 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK 781 (863)
Q Consensus 702 k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~ 781 (863)
|.|+++|+||+|++++|.+|.+.|.+|+.||++|...-++..|||||||||||||.+|+|+|.+|...|+.|.++++.++
T Consensus 665 KIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNM 744 (953)
T KOG0736|consen 665 KIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNM 744 (953)
T ss_pred CCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHH
Confidence 35678999999999999999999999999999998877777899999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCch-hhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCC
Q psy11009 782 YRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESE-HEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 782 ~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~-~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~ 860 (863)
|+|++|+++|.+|+.||..+||||||||+|.++++||.+++ ..+..|+++|||.+||++... ..+.|+||+|||||+
T Consensus 745 YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~--~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 745 YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDS--SSQDVFVIGATNRPD 822 (953)
T ss_pred HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCC--CCCceEEEecCCCcc
Confidence 99999999999999999999999999999999999987665 478899999999999999763 456799999999999
Q ss_pred CCC
Q psy11009 861 EGA 863 (863)
Q Consensus 861 ~ID 863 (863)
.||
T Consensus 823 LLD 825 (953)
T KOG0736|consen 823 LLD 825 (953)
T ss_pred ccC
Confidence 998
No 18
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-40 Score=381.14 Aligned_cols=382 Identities=35% Similarity=0.469 Sum_probs=322.6
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCcccccccccccc--cchhcccchhhhccCcchhHHHHHHHhhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM--NFLSLVLPLLAEEHGKLKFKEAITLALTV 136 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~l~~~~gk~s~~e~~~~~~~v 136 (863)
+|.++|++|. +-+..-.|++++ +.||||||++++..+.. .|.++.+|.. .+.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~---------g~~~~~~t~~~~~~a~~~~~~~~~~~~~~--------------~~~~~ 58 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLH---------GPPGTGKTLLARALANEGAEFLSINGPEI--------------LSKYV 58 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceee---------CCCCCchhHHHHHHHhccCcccccCcchh--------------hhhhh
Confidence 6889999999 889999999999 99999999999988774 2255556665 89999
Q ss_pred hhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccCCC
Q psy11009 137 GSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIP 213 (863)
Q Consensus 137 g~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p 213 (863)
|.++.+++.+|..+ ....|+|+|+||+|++...|.. ....+++++++..||++. ... |+++++||++
T Consensus 59 ~~~~~~~~~~~~~a--------~~~~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~-~~~-v~~~~~~~~~ 128 (494)
T COG0464 59 GESELRLRELFEEA--------EKLAPSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK-RGQ-VIVIGATNRP 128 (494)
T ss_pred hHHHHHHHHHHHHH--------HHhCCCeEeechhhhcccCccccccchhhHHHHHHHHhccccc-CCc-eEEEeecCCc
Confidence 99999999999865 6677799999999999999965 566899999999999999 665 9999999999
Q ss_pred CCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q psy11009 214 WDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGL 291 (863)
Q Consensus 214 ~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~ 291 (863)
..+|+|+.| |||+.++++.|+...|.+|+..+...+....+.++..+|..+.||+|+++..+|+++.+.++++.
T Consensus 129 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~---- 204 (494)
T COG0464 129 DGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLGALAKEAALRELRRA---- 204 (494)
T ss_pred cccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhh----
Confidence 999999999 99999999999999999999999999888888999999999999999999999999988888764
Q ss_pred ChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccccccCCccccccc
Q psy11009 292 TPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLISRD 371 (863)
Q Consensus 292 ~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~ll~Gp~g~~~~~ 371 (863)
+
T Consensus 205 ----------------~--------------------------------------------------------------- 205 (494)
T COG0464 205 ----------------I--------------------------------------------------------------- 205 (494)
T ss_pred ----------------h---------------------------------------------------------------
Confidence 0
Q ss_pred cccccchHHHHHHHhhhhhhhhhhccCCcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchhHHHHHHHHHHH
Q psy11009 372 NLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTIA 451 (863)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~l~~i~e~~~la 451 (863)
T Consensus 206 -------------------------------------------------------------------------------- 205 (494)
T COG0464 206 -------------------------------------------------------------------------------- 205 (494)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCCC
Q psy11009 452 RESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNSRP 531 (863)
Q Consensus 452 Re~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~tl~~fk~~~~~~~~~~~~~~~ 531 (863)
.... .
T Consensus 206 ----------------------------------------------------------------~~~~-----------~ 210 (494)
T COG0464 206 ----------------------------------------------------------------DLVG-----------E 210 (494)
T ss_pred ----------------------------------------------------------------ccCc-----------c
Confidence 0000 0
Q ss_pred CCCCcccccCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccccCCcCCCCCCCCCCCCCCccccCCCCCCCCC
Q psy11009 532 NQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPANN 611 (863)
Q Consensus 532 ~~~~~~~ss~~~~~~~~~~~dpdvw~~p~~~d~~~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~ss~~r~~~~~~~~ 611 (863)
+. -.+. +..
T Consensus 211 --------------------~~----~~~~-------------~~~---------------------------------- 219 (494)
T COG0464 211 --------------------YI----GVTE-------------DDF---------------------------------- 219 (494)
T ss_pred --------------------cc----cccH-------------HHH----------------------------------
Confidence 00 0000 000
Q ss_pred CCCCCCCCcccchhhhccCCCCchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccCCCChHH
Q psy11009 612 KKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDNDL 691 (863)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~s~ds~~~~~~~~~~~~~~~s~~~n~~~~n~~~~~~~~~~~~~~~~~~~~~k~~~~g~d~~~ 691 (863)
. ...++.. ..
T Consensus 220 -------------~----------~~l~~~~-----------------------------------------~~------ 229 (494)
T COG0464 220 -------------E----------EALKKVL-----------------------------------------PS------ 229 (494)
T ss_pred -------------H----------HHHHhcC-----------------------------------------cc------
Confidence 0 0000000 00
Q ss_pred HHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcE
Q psy11009 692 VEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTF 770 (863)
Q Consensus 692 ~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~ 770 (863)
+......+..+|++++|++.+++.+.+.+.+|+.+++.|...+ ++++|+|||||||||||++|+++|.+++.+|
T Consensus 230 -----~~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~f 304 (494)
T COG0464 230 -----RGVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRF 304 (494)
T ss_pred -----cccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeE
Confidence 1112234577899999999999999999999999999998755 7778999999999999999999999999999
Q ss_pred EEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCce
Q psy11009 771 FNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVV 850 (863)
Q Consensus 771 i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~V 850 (863)
+.+..+++.++|+|+++++++.+|..|+..+||||||||+|++++.|+.+. +....+++++||.+||++....+ |
T Consensus 305 i~v~~~~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~-~~~~~r~~~~lL~~~d~~e~~~~----v 379 (494)
T COG0464 305 ISVKGSELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSE-DGSGRRVVGQLLTELDGIEKAEG----V 379 (494)
T ss_pred EEeeCHHHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCC-chHHHHHHHHHHHHhcCCCccCc----e
Confidence 999999999999999999999999999999999999999999999987654 33347999999999999976544 9
Q ss_pred EEEEecCCCCCCC
Q psy11009 851 MVLAATNFPWEGA 863 (863)
Q Consensus 851 vVIaTTN~P~~ID 863 (863)
+||+|||+||.||
T Consensus 380 ~vi~aTN~p~~ld 392 (494)
T COG0464 380 LVIAATNRPDDLD 392 (494)
T ss_pred EEEecCCCccccC
Confidence 9999999999998
No 19
>KOG0741|consensus
Probab=100.00 E-value=2.7e-42 Score=382.06 Aligned_cols=279 Identities=24% Similarity=0.292 Sum_probs=238.2
Q ss_pred ccccCCccccc--ccceeecceeEeeecccccccCcCCCcccccccccccc-cc---hhcccchhhhccCcchhHHHHHH
Q psy11009 59 FLTSKYPSVFL--LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM-NF---LSLVLPLLAEEHGKLKFKEAITL 132 (863)
Q Consensus 59 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~---~~~~~~~l~~~~gk~s~~e~~~~ 132 (863)
|--.-||.=+. |-|.+--|+||| |+|||||||+|+-+.|| |- --++||++ |
T Consensus 238 FAsRvFpp~vie~lGi~HVKGiLLy---------GPPGTGKTLiARqIGkMLNArePKIVNGPeI--------------L 294 (744)
T KOG0741|consen 238 FASRVFPPEVIEQLGIKHVKGILLY---------GPPGTGKTLIARQIGKMLNAREPKIVNGPEI--------------L 294 (744)
T ss_pred HHhhcCCHHHHHHcCccceeeEEEE---------CCCCCChhHHHHHHHHHhcCCCCcccCcHHH--------------H
Confidence 44455655444 999999999999 99999999999999997 11 01457888 9
Q ss_pred HhhhhhHHHHHHHHhhcc----cceeeeccCCCCcEEEEEeccccccccccc-----chhHhHHHHHHHHhhccCCCCCC
Q psy11009 133 ALTVGSSLNLYRSITNRG----FYIEDYEVSPPGPTLAVAKMFSSLAVQKLL-----RGSKTFRTLCIHKYRLLTFPSTP 203 (863)
Q Consensus 133 ~~~vg~se~~~r~i~~~~----~~l~~~~~~~~~P~IlFiDEiDal~~~R~~-----~~~~~v~n~lL~~ld~~~~~~~~ 203 (863)
++|||+||.|||.+|..+ +.+| ..-+=.||.|||+|+|+++|++ +.+++|+||||..|||.++.+ +
T Consensus 295 ~KYVGeSE~NvR~LFaDAEeE~r~~g----~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN-N 369 (744)
T KOG0741|consen 295 NKYVGESEENVRKLFADAEEEQRRLG----ANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN-N 369 (744)
T ss_pred HHhhcccHHHHHHHHHhHHHHHHhhC----ccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh-c
Confidence 999999999999999754 1222 3445679999999999999955 788999999999999999887 9
Q ss_pred eEEEEccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccC----CCCCcccHHHHhhhCCCCCHHHHHHHHH
Q psy11009 204 VQYSIQKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEV----KVDPAVDLTHIASQLDGYSGADITNVCR 277 (863)
Q Consensus 204 VivIaATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~----~l~~dvdl~~LA~~TeG~SGADI~~lv~ 277 (863)
|+|||.|||.|+||+||+| ||+.+++|.+||+++|++||++|.+++ .++.++|+.+||.+|..||||+|+.+|+
T Consensus 370 ILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVk 449 (744)
T KOG0741|consen 370 ILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVK 449 (744)
T ss_pred EEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHH
Confidence 9999999999999999999 999999999999999999999999766 3568999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCC--Cchhhhhhcccccceeeeccccc-----eeee
Q psy11009 278 DASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKS--VAREDLENITVERIAPHMSTIGK-----KLYL 350 (863)
Q Consensus 278 ~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ps--vs~~~l~~~~~~~~~~a~he~gh-----alv~ 350 (863)
.|...|+.|.+..... ....+.+.....|++.||+.||..++|+ +++++++++...+++.|.|+..| +++.
T Consensus 450 sA~S~A~nR~vk~~~~--~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv 527 (744)
T KOG0741|consen 450 SAQSFAMNRHVKAGGK--VEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVMNGMINWGPPVTRILDDGKLLV 527 (744)
T ss_pred HHHHHHHHhhhccCcc--eecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHH
Confidence 9999999998754321 2222333445689999999999999997 79999999999999999999988 5577
Q ss_pred ecccCCccc-----cccCCccc
Q psy11009 351 KFQKTPIVT-----LATGPVGL 367 (863)
Q Consensus 351 ~~l~~~~~~-----ll~Gp~g~ 367 (863)
.+++.++.. |++||+|.
T Consensus 528 ~qvk~s~~s~lvSvLl~Gp~~s 549 (744)
T KOG0741|consen 528 QQVKNSERSPLVSVLLEGPPGS 549 (744)
T ss_pred HHhhccccCcceEEEEecCCCC
Confidence 888877766 99999964
No 20
>KOG0739|consensus
Probab=100.00 E-value=1.3e-41 Score=356.13 Aligned_cols=246 Identities=27% Similarity=0.406 Sum_probs=211.7
Q ss_pred hccccCCcccccccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 58 TFLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
..||-|||.||.=--+--.|+||| |+||||||-|||++|. --|.|+.---| .|.
T Consensus 149 VILPIKFPqlFtGkR~PwrgiLLy---------GPPGTGKSYLAKAVATEAnSTFFSvSSSDL--------------vSK 205 (439)
T KOG0739|consen 149 VILPIKFPQLFTGKRKPWRGILLY---------GPPGTGKSYLAKAVATEANSTFFSVSSSDL--------------VSK 205 (439)
T ss_pred eeecccchhhhcCCCCcceeEEEe---------CCCCCcHHHHHHHHHhhcCCceEEeehHHH--------------HHH
Confidence 368999999998322223599999 9999999999999998 45777776666 777
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccC
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKG 211 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN 211 (863)
++|+||+.|+.+|+-+ ...+|+||||||+|+++..|.. +.++|+..+||.||+|....+++|+|+||||
T Consensus 206 WmGESEkLVknLFemA--------Re~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 206 WMGESEKLVKNLFEMA--------RENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATN 277 (439)
T ss_pred HhccHHHHHHHHHHHH--------HhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCC
Confidence 7999999999999864 7889999999999999999955 5678999999999999999999999999999
Q ss_pred CCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcC
Q psy11009 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG 290 (863)
Q Consensus 212 ~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~ 290 (863)
-||.||.|++|||+++||||+|+..+|..+|+.|+.+.++. .+-|+.+|+++|+||||+||.-+|+.|.++.+|+-...
T Consensus 278 iPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsA 357 (439)
T KOG0739|consen 278 IPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSA 357 (439)
T ss_pred CchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhh
Confidence 99999999999999999999999999999999999998887 67899999999999999999999999999999985431
Q ss_pred CCh---------hh-------------------hccCCc-cccCCCCCHHHHHHHHHHhcCCCchhhhhhccc
Q psy11009 291 LTP---------EQ-------------------IRQIPK-EELDLPVSQRDFEEALARCNKSVAREDLENITV 334 (863)
Q Consensus 291 ~~~---------~~-------------------~~~~~~-~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~ 334 (863)
... .. +-+++. .-..++||+.||+.+|.+.+|++++.|+.+.++
T Consensus 358 thFk~v~~~s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~ 430 (439)
T KOG0739|consen 358 THFKKVSGPSNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEK 430 (439)
T ss_pred hhhhccCCCCChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHH
Confidence 111 00 112222 224678999999999999999999999887654
No 21
>CHL00206 ycf2 Ycf2; Provisional
Probab=100.00 E-value=1e-40 Score=411.34 Aligned_cols=337 Identities=14% Similarity=0.111 Sum_probs=249.3
Q ss_pred eehhhhhhccceeeee----cchhhccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccc
Q psy11009 38 ELSIFSAMVDGFVYIF----GNILTFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNF 109 (863)
Q Consensus 38 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~ 109 (863)
|--||.|.-....|-- .|.+ .+|+.=+-.++ |-.+..-|+||+ |+||||||++||++|. .+|
T Consensus 1589 Er~IflA~yq~It~Sq~~~~~n~~-~~~s~~kP~slrLGl~pPKGILLi---------GPPGTGKTlLAKALA~es~VPF 1658 (2281)
T CHL00206 1589 ERRIFLAHYQTITYSQTSCGANSF-HFPSHGKPFSLRLALSPSRGILVI---------GSIGTGRSYLVKYLATNSYVPF 1658 (2281)
T ss_pred hhHhHHHHHhHHhccccccccccc-cCcccCcCHHHHcCCCCCCceEEE---------CCCCCCHHHHHHHHHHhcCCce
Confidence 3456666554433221 1222 23443333333 666777899999 9999999999999998 999
Q ss_pred hhcccchhhhcc------CcchhHHH----------------H-----HHHhhhhhHHH--HHHHHhhcccceeeeccCC
Q psy11009 110 LSLVLPLLAEEH------GKLKFKEA----------------I-----TLALTVGSSLN--LYRSITNRGFYIEDYEVSP 160 (863)
Q Consensus 110 ~~~~~~~l~~~~------gk~s~~e~----------------~-----~~~~~vg~se~--~~r~i~~~~~~l~~~~~~~ 160 (863)
|++.++.+...+ ..+...|+ . +..+++|..+. ++|.+|+.| .+
T Consensus 1659 IsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelA--------Rk 1730 (2281)
T CHL00206 1659 ITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNALTMDMMPKIDRFYITLQFELA--------KA 1730 (2281)
T ss_pred EEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcchhhhhhhhhhhHHHHHHHHHHH--------HH
Confidence 999999987543 11111110 0 01222555555 499999976 77
Q ss_pred CCcEEEEEecccccccccccchhHhHHHHHHHHhhccCC--CCCCeEEEEccCCCCCccHHHhh--ccceEEEecCCCHH
Q psy11009 161 PGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTF--PSTPVQYSIQKGIPWDIDEALRR--RLEKRIYIPLPSKA 236 (863)
Q Consensus 161 ~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~--~~~~VivIaATN~p~~LD~AllR--RFD~~I~i~lPd~~ 236 (863)
.+||||||||||+|+.+. .....+++||.+||+... ...+|+||||||+|+.|||||+| |||++|+|++|+..
T Consensus 1731 ~SPCIIFIDEIDaL~~~d---s~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p 1807 (2281)
T CHL00206 1731 MSPCIIWIPNIHDLNVNE---SNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIP 1807 (2281)
T ss_pred CCCeEEEEEchhhcCCCc---cceehHHHHHHHhccccccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCch
Confidence 889999999999999752 122348999999998742 34489999999999999999999 99999999999999
Q ss_pred HHHHHHHHHh--ccCCCCC-cccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHH
Q psy11009 237 GREALLKINL--KEVKVDP-AVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDF 313 (863)
Q Consensus 237 ~R~~IL~~~l--~~~~l~~-dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df 313 (863)
+|.+++..++ +++.+.. .+|++.+|+.|+|||||||+++|++|++.|+++. ...|+++||
T Consensus 1808 ~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~-----------------ks~Id~~~I 1870 (2281)
T CHL00206 1808 QQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK-----------------KSIIDTNTI 1870 (2281)
T ss_pred hHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC-----------------CCccCHHHH
Confidence 9999998654 5666664 3689999999999999999999999999999987 558999999
Q ss_pred HHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccc----cccCCc----ccc-------ccccccccch
Q psy11009 314 EEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVT----LATGPV----GLI-------SRDNLKHKSP 378 (863)
Q Consensus 314 ~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~----ll~Gp~----g~~-------~~~~~~~~~~ 378 (863)
..|+.++..+.... . ....+.. +++||+|||++++.+...+.. ...+|. |-. .....+++..
T Consensus 1871 ~~Al~Rq~~g~~~~-~-~~~~~~~-ia~yEiGhAvvq~~L~~~~pv~kISIy~~~~~~r~~~~yl~~wyle~~~~mkk~t 1947 (2281)
T CHL00206 1871 RSALHRQTWDLRSQ-V-RSVQDHG-ILFYQIGRAVAQNVLLSNCPIDPISIYMKKKSCKEGDSYLYKWYFELGTSMKKLT 1947 (2281)
T ss_pred HHHHHHHHhhhhhc-c-cCcchhh-hhhhHHhHHHHHHhccCCCCcceEEEecCCccccCcccceeEeecCCcccCCHHH
Confidence 99999998876432 1 2222332 589999999999998755522 111110 111 0124677889
Q ss_pred HHHHHHHhhhhhhhhhhccCCcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchh
Q psy11009 379 IKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDK 440 (863)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~ 440 (863)
+...+++.++|++|||..+.-. ++ +++|+|.|||++.
T Consensus 1948 iL~~Il~cLAGraAedlwf~~~-~~------------------------~~n~It~yg~vEn 1984 (2281)
T CHL00206 1948 ILLYLLSCSAGSVAQDLWSLPG-PD------------------------EKNGITSYGLVEN 1984 (2281)
T ss_pred HHHHHHHHhhhhhhhhhccCcc-hh------------------------hhcCcccccchhh
Confidence 9999999999999999977422 22 8899999999987
No 22
>KOG0737|consensus
Probab=100.00 E-value=1.8e-38 Score=343.32 Aligned_cols=240 Identities=26% Similarity=0.388 Sum_probs=205.3
Q ss_pred hhccccCCcccccc--cceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHH
Q psy11009 57 LTFLTSKYPSVFLL--PKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAIT 131 (863)
Q Consensus 57 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~ 131 (863)
+-.||.++|++|+. =.+-..|+||| |+||||||++||++|| +|||++.+-+|-.+|
T Consensus 107 ~VilPlr~pelF~~g~Ll~p~kGiLL~---------GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW---------- 167 (386)
T KOG0737|consen 107 LVILPLRRPELFAKGKLLRPPKGILLY---------GPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW---------- 167 (386)
T ss_pred HHhhcccchhhhcccccccCCccceec---------CCCCchHHHHHHHHHHHcCCCcceeeccccchhh----------
Confidence 45799999999961 12457899999 9999999999999999 999999999994444
Q ss_pred HHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCC-CeEEE
Q psy11009 132 LALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPST-PVQYS 207 (863)
Q Consensus 132 ~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~-~VivI 207 (863)
.|++++.++.+|.-+ ..-.||||||||+|++.+.|.+ +....+.++|....||+.+... +|+|+
T Consensus 168 ----fgE~eKlv~AvFslA--------sKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 168 ----FGEAQKLVKAVFSLA--------SKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred ----HHHHHHHHHHHHhhh--------hhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 699999999999654 6888999999999999988855 4457899999999999987753 69999
Q ss_pred EccCCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 208 IQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 208 aATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~ 287 (863)
||||||.+||.|++|||.++++|++|+..+|.+||+.+|++-++++++|+..+|..|+||||+||+++|+.|++.++|+.
T Consensus 236 gATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~ 315 (386)
T KOG0737|consen 236 GATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRLAALRPIREL 315 (386)
T ss_pred eCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCC-Chhhhcc-------CCc---cccCCCCCHHHHHHHHHHhcCCCchh
Q psy11009 288 IIGL-TPEQIRQ-------IPK---EELDLPVSQRDFEEALARCNKSVARE 327 (863)
Q Consensus 288 ~~~~-~~~~~~~-------~~~---~~~~~~Vt~~Df~~AL~~v~psvs~~ 327 (863)
+... ...+... .+. ....++++++||..|+.++-+++.-+
T Consensus 316 ~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~ 366 (386)
T KOG0737|consen 316 LVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMD 366 (386)
T ss_pred HHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHh
Confidence 7542 1111111 001 12357999999999999887774433
No 23
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.4e-37 Score=377.03 Aligned_cols=245 Identities=27% Similarity=0.353 Sum_probs=214.8
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|-+||.+|. +.++...|+|+| |.||||||++|+++|+ .||+++.+|+| ++.|
T Consensus 471 ~~~~~~~~~~~~g~~~~~giLL~---------GppGtGKT~lakalA~e~~~~fi~v~~~~l--------------~~~~ 527 (733)
T TIGR01243 471 WPLKHPEIFEKMGIRPPKGVLLF---------GPPGTGKTLLAKAVATESGANFIAVRGPEI--------------LSKW 527 (733)
T ss_pred hhhhCHHHHHhcCCCCCceEEEE---------CCCCCCHHHHHHHHHHhcCCCEEEEehHHH--------------hhcc
Confidence 4789999998 888888999999 9999999999999997 89999999998 7889
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc----chhHhHHHHHHHHhhccCCCCCCeEEEEccC
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL----RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKG 211 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~----~~~~~v~n~lL~~ld~~~~~~~~VivIaATN 211 (863)
||++|+++|.+|..+ ....||||||||+|+|+..|+. ...++++++||.+||++.... +|+||||||
T Consensus 528 vGese~~i~~~f~~A--------~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~-~v~vI~aTn 598 (733)
T TIGR01243 528 VGESEKAIREIFRKA--------RQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELS-NVVVIAATN 598 (733)
T ss_pred cCcHHHHHHHHHHHH--------HhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCC-CEEEEEeCC
Confidence 999999999999875 6678999999999999998854 346789999999999987655 899999999
Q ss_pred CCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhc
Q psy11009 212 IPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKII 289 (863)
Q Consensus 212 ~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~ 289 (863)
+|+.||+|++| |||+.|+||+||.++|.+||+.|+++.++..++|++.||+.|+|||||||+++|++|++.++++...
T Consensus 599 ~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~ 678 (733)
T TIGR01243 599 RPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIG 678 (733)
T ss_pred ChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999998654
Q ss_pred CCChhhhccCC-ccccCCCCCHHHHHHHHHHhcCCCchhhhhhccccc
Q psy11009 290 GLTPEQIRQIP-KEELDLPVSQRDFEEALARCNKSVAREDLENITVER 336 (863)
Q Consensus 290 ~~~~~~~~~~~-~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~ 336 (863)
........... .......|+++||+.|+.+++|+++++++..|+...
T Consensus 679 ~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~ 726 (733)
T TIGR01243 679 SPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLA 726 (733)
T ss_pred hccchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 32211111100 011235799999999999999999999998887544
No 24
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-37 Score=361.43 Aligned_cols=220 Identities=28% Similarity=0.359 Sum_probs=201.8
Q ss_pred hccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHH
Q psy11009 58 TFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLA 133 (863)
Q Consensus 58 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~ 133 (863)
.-+|-+||.+|- +-++.+.|+|+| |.||||||++||++|. -||+++.+|.| ++
T Consensus 258 v~~~~~~~e~~~~~~~~~~~giLl~---------GpPGtGKT~lAkava~~~~~~fi~v~~~~l--------------~s 314 (494)
T COG0464 258 IETPLKRPELFRKLGLRPPKGVLLY---------GPPGTGKTLLAKAVALESRSRFISVKGSEL--------------LS 314 (494)
T ss_pred HHhHhhChHHHHhcCCCCCCeeEEE---------CCCCCCHHHHHHHHHhhCCCeEEEeeCHHH--------------hc
Confidence 446789999988 678888899999 9999999999999999 89999999999 88
Q ss_pred hhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEecccccccccccc---hhHhHHHHHHHHhhccCCCCCCeEEEEcc
Q psy11009 134 LTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLR---GSKTFRTLCIHKYRLLTFPSTPVQYSIQK 210 (863)
Q Consensus 134 ~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~---~~~~v~n~lL~~ld~~~~~~~~VivIaAT 210 (863)
+|||++|+++|.+|.++ ....||||||||+|+++..|+.. ...+++++||++||++.... +|+|||||
T Consensus 315 k~vGesek~ir~~F~~A--------~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~-~v~vi~aT 385 (494)
T COG0464 315 KWVGESEKNIRELFEKA--------RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAE-GVLVIAAT 385 (494)
T ss_pred cccchHHHHHHHHHHHH--------HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccC-ceEEEecC
Confidence 88999999999999975 57889999999999999999652 23699999999999998776 89999999
Q ss_pred CCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCC--CCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 211 GIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVK--VDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 211 N~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~--l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
|+||.||+|++| |||++|+|++||.++|.+||+.|+.+.. +..++|+..+|+.|+|||||||+.+|++|++.++++
T Consensus 386 N~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~ 465 (494)
T COG0464 386 NRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALRE 465 (494)
T ss_pred CCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999 9999999999999999999999998544 457899999999999999999999999999999998
Q ss_pred hhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCc
Q psy11009 287 KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVA 325 (863)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs 325 (863)
.. ...||++||..|+.+++|+++
T Consensus 466 ~~----------------~~~~~~~~~~~a~~~~~p~~~ 488 (494)
T COG0464 466 AR----------------RREVTLDDFLDALKKIKPSVT 488 (494)
T ss_pred hc----------------cCCccHHHHHHHHHhcCCCCC
Confidence 63 347999999999999999977
No 25
>KOG0728|consensus
Probab=100.00 E-value=2.3e-37 Score=317.65 Aligned_cols=218 Identities=22% Similarity=0.342 Sum_probs=199.8
Q ss_pred hccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHH
Q psy11009 58 TFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLA 133 (863)
Q Consensus 58 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~ 133 (863)
.-||.|.|+||- |-|+|.-|+||| |.|||||||+|+++++ .-||-+.+-+| ..
T Consensus 163 IeLPvKHPELF~aLGIaQPKGvlLy---------gppgtGktLlaraVahht~c~firvsgsel--------------vq 219 (404)
T KOG0728|consen 163 IELPVKHPELFEALGIAQPKGVLLY---------GPPGTGKTLLARAVAHHTDCTFIRVSGSEL--------------VQ 219 (404)
T ss_pred HhccccCHHHHHhcCCCCCcceEEe---------cCCCCchhHHHHHHHhhcceEEEEechHHH--------------HH
Confidence 359999999998 999999999999 9999999999999999 67888999999 78
Q ss_pred hhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---c---hhHhHHHHHHHHhhccCCCCCCeEEE
Q psy11009 134 LTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---R---GSKTFRTLCIHKYRLLTFPSTPVQYS 207 (863)
Q Consensus 134 ~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~---~~~~v~n~lL~~ld~~~~~~~~VivI 207 (863)
.|+|+--.-||.+|--+ ...+|+|||+||||+|++.|.. + +..|..-+||.||||++... ++-||
T Consensus 220 k~igegsrmvrelfvma--------rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatk-nikvi 290 (404)
T KOG0728|consen 220 KYIGEGSRMVRELFVMA--------REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATK-NIKVI 290 (404)
T ss_pred HHhhhhHHHHHHHHHHH--------HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccccc-ceEEE
Confidence 89999999999999754 6788999999999999999922 2 23455567888999999876 89999
Q ss_pred EccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy11009 208 IQKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMR 285 (863)
Q Consensus 208 aATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air 285 (863)
.||||.+.||||++| |.|++|+||+|+.++|.+||+.|.+++++..++++..+|....|.|||+++.+|.+|.++|+|
T Consensus 291 matnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk~vcteagm~alr 370 (404)
T KOG0728|consen 291 MATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVKGVCTEAGMYALR 370 (404)
T ss_pred EeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhhhhhhhhhHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCC
Q psy11009 286 RKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSV 324 (863)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psv 324 (863)
+. +..||++||+-|+.++...-
T Consensus 371 er-----------------rvhvtqedfemav~kvm~k~ 392 (404)
T KOG0728|consen 371 ER-----------------RVHVTQEDFEMAVAKVMQKD 392 (404)
T ss_pred Hh-----------------hccccHHHHHHHHHHHHhcc
Confidence 87 56899999999999886543
No 26
>KOG0735|consensus
Probab=100.00 E-value=4.3e-35 Score=333.70 Aligned_cols=153 Identities=42% Similarity=0.663 Sum_probs=144.1
Q ss_pred CccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccccc
Q psy11009 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRG 784 (863)
Q Consensus 706 ~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~G 784 (863)
..|.||+|+.++++.+.+.+.||.++|.+|...+ +-+.|+|||||||||||+||.++|..++..|+.|.++++.++|+|
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 5689999999999999999999999999999888 667799999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCCC
Q psy11009 785 ESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 785 e~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ID 863 (863)
.+|..+|.+|..|+..+||||||||+|.++++||-++ ..+..|+++|||++|||..+..+ |.|+|||.||+.||
T Consensus 744 aSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlLTelDG~Egl~G----V~i~aaTsRpdliD 817 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLLTELDGAEGLDG----VYILAATSRPDLID 817 (952)
T ss_pred ccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCC-CCchHHHHHHHHHhhccccccce----EEEEEecCCccccC
Confidence 9999999999999999999999999999999997654 56778999999999999977544 99999999999998
No 27
>KOG0652|consensus
Probab=100.00 E-value=8.3e-36 Score=307.67 Aligned_cols=214 Identities=22% Similarity=0.341 Sum_probs=196.1
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
.||-+.++-|- |-|+-.-|+|+| |+|||||||+|++.|- .-|+-+.+|-| ..|
T Consensus 188 VLpmth~ekF~~lgi~pPKGvLmY---------GPPGTGKTlmARAcAaqT~aTFLKLAgPQL--------------VQM 244 (424)
T KOG0652|consen 188 VLPMTHKEKFENLGIRPPKGVLMY---------GPPGTGKTLMARACAAQTNATFLKLAGPQL--------------VQM 244 (424)
T ss_pred ccccccHHHHHhcCCCCCCceEee---------CCCCCcHHHHHHHHHHhccchHHHhcchHH--------------Hhh
Confidence 57888899999 999999999999 9999999999998875 67999999999 899
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccc-cc-----chhHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQK-LL-----RGSKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R-~~-----~~~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
|+|.--+.||+.|.-+ ...+||||||||+|+|+.+| ++ .+..|..-+||.||||+.+.. +|-|||
T Consensus 245 fIGdGAkLVRDAFaLA--------KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~-~vKviA 315 (424)
T KOG0652|consen 245 FIGDGAKLVRDAFALA--------KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDD-RVKVIA 315 (424)
T ss_pred hhcchHHHHHHHHHHh--------hccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCcc-ceEEEe
Confidence 9999999999999754 67789999999999999999 33 233455567888999998765 999999
Q ss_pred ccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
||||.+.||||++| |+|++|+||.|+.++|.+|+++|.+++...+|+++++||+.|++|.||+++.+|-+|.+.|+|+
T Consensus 316 ATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcKAVcVEAGMiALRr 395 (424)
T KOG0652|consen 316 ATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCKAVCVEAGMIALRR 395 (424)
T ss_pred ecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhheeeehhhhHHHHhc
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhhccCCccccCCCCCHHHHHHHHHHhc
Q psy11009 287 KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCN 321 (863)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ 321 (863)
. ...|+.+||+++|..+.
T Consensus 396 ~-----------------atev~heDfmegI~eVq 413 (424)
T KOG0652|consen 396 G-----------------ATEVTHEDFMEGILEVQ 413 (424)
T ss_pred c-----------------cccccHHHHHHHHHHHH
Confidence 7 44799999999998875
No 28
>KOG0739|consensus
Probab=100.00 E-value=5.2e-33 Score=291.64 Aligned_cols=170 Identities=56% Similarity=0.940 Sum_probs=159.8
Q ss_pred HHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc
Q psy11009 690 DLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT 769 (863)
Q Consensus 690 ~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~ 769 (863)
++...+...|+...|++.|+|+.|++.+|+.|.++|.+|...|++|.+.+.||+|+||||||||||++||+|+|.+.+..
T Consensus 114 KLr~~L~sAIv~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST 193 (439)
T KOG0739|consen 114 KLRSALNSAIVREKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST 193 (439)
T ss_pred HHHHHhhhhhhccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc
Confidence 45566778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q psy11009 770 FFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKV 849 (863)
Q Consensus 770 ~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~ 849 (863)
||.|+.++|.++|.|++++.++.+|++||..+|+||||||||.+|+.|+. ++++..+|+..+||.||+|++.. ...
T Consensus 194 FFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~e-nEseasRRIKTEfLVQMqGVG~d---~~g 269 (439)
T KOG0739|consen 194 FFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSE-NESEASRRIKTEFLVQMQGVGND---NDG 269 (439)
T ss_pred eEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCC-CchHHHHHHHHHHHHhhhccccC---CCc
Confidence 99999999999999999999999999999999999999999999998754 56899999999999999999764 345
Q ss_pred eEEEEecCCCCCCC
Q psy11009 850 VMVLAATNFPWEGA 863 (863)
Q Consensus 850 VvVIaTTN~P~~ID 863 (863)
|+|++|||-||.+|
T Consensus 270 vLVLgATNiPw~LD 283 (439)
T KOG0739|consen 270 VLVLGATNIPWVLD 283 (439)
T ss_pred eEEEecCCCchhHH
Confidence 99999999999987
No 29
>KOG0726|consensus
Probab=100.00 E-value=7e-35 Score=304.76 Aligned_cols=216 Identities=19% Similarity=0.322 Sum_probs=197.2
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
-||--.|+++- .-|.-.-|++|| |.|||||||+||++|. .-|+-+++-+| ...
T Consensus 202 ELPLthPE~YeemGikpPKGVIly---------G~PGTGKTLLAKAVANqTSATFlRvvGseL--------------iQk 258 (440)
T KOG0726|consen 202 ELPLTHPEYYEEMGIKPPKGVILY---------GEPGTGKTLLAKAVANQTSATFLRVVGSEL--------------IQK 258 (440)
T ss_pred cCCCCCHHHHHHcCCCCCCeeEEe---------CCCCCchhHHHHHHhcccchhhhhhhhHHH--------------HHH
Confidence 47888899998 889999999999 9999999999999998 78999999999 889
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccc-cc--ch---hHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQK-LL--RG---SKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R-~~--~~---~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
|.|.--+.||++|.-+ ...+|+|+||||||+++.+| ++ +. ..|..-+||+|+||+.+.+ .|-||.
T Consensus 259 ylGdGpklvRqlF~vA--------~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrg-DvKvim 329 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVA--------EEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRG-DVKVIM 329 (440)
T ss_pred HhccchHHHHHHHHHH--------HhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccC-CeEEEE
Confidence 9999999999999744 78899999999999999999 22 33 3444457888999999876 899999
Q ss_pred ccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
|||+.+.|||||+| |.|++|+|++||...+..||.+|..++.+..+++++.+...-+.+|||||+.+|.+|.+.|+|+
T Consensus 330 ATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnle~li~~kddlSGAdIkAictEaGllAlRe 409 (440)
T KOG0726|consen 330 ATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNLEELIMTKDDLSGADIKAICTEAGLLALRE 409 (440)
T ss_pred ecccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccHHHHhhcccccccccHHHHHHHHhHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCC
Q psy11009 287 KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKS 323 (863)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ps 323 (863)
. +..|+++||..|..++..+
T Consensus 410 r-----------------Rm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 410 R-----------------RMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred H-----------------HhhccHHHHHHHHHHHHHh
Confidence 7 5689999999999887543
No 30
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=2.3e-34 Score=331.38 Aligned_cols=212 Identities=20% Similarity=0.235 Sum_probs=184.9
Q ss_pred ceeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccc
Q psy11009 72 KAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGF 151 (863)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~ 151 (863)
+...-|+|+| |+||||||++||++|+. |+.|.++.+.|.+ ++.|||+++.+++++|..+
T Consensus 256 l~~pkGILL~---------GPpGTGKTllAkaiA~e----~~~~~~~l~~~~l-------~~~~vGese~~l~~~f~~A- 314 (489)
T CHL00195 256 LPTPRGLLLV---------GIQGTGKSLTAKAIAND----WQLPLLRLDVGKL-------FGGIVGESESRMRQMIRIA- 314 (489)
T ss_pred CCCCceEEEE---------CCCCCcHHHHHHHHHHH----hCCCEEEEEhHHh-------cccccChHHHHHHHHHHHH-
Confidence 3456799999 99999999999999998 8889887777665 8899999999999999854
Q ss_pred ceeeeccCCCCcEEEEEeccccccccccc----chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhh--ccc
Q psy11009 152 YIEDYEVSPPGPTLAVAKMFSSLAVQKLL----RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRR--RLE 225 (863)
Q Consensus 152 ~l~~~~~~~~~P~IlFiDEiDal~~~R~~----~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllR--RFD 225 (863)
...+||||||||+|+++..+.. +...+++++||.+|+.. ..+|+||||||+|+.||+|++| |||
T Consensus 315 -------~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~---~~~V~vIaTTN~~~~Ld~allR~GRFD 384 (489)
T CHL00195 315 -------EALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK---KSPVFVVATANNIDLLPLEILRKGRFD 384 (489)
T ss_pred -------HhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC---CCceEEEEecCChhhCCHHHhCCCcCC
Confidence 6678999999999999876532 56789999999999753 3379999999999999999999 999
Q ss_pred eEEEecCCCHHHHHHHHHHHhccCCCC--CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccc
Q psy11009 226 KRIYIPLPSKAGREALLKINLKEVKVD--PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEE 303 (863)
Q Consensus 226 ~~I~i~lPd~~~R~~IL~~~l~~~~l~--~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~ 303 (863)
+.|+|++|+.++|.+||+.|+++.... .++|++.||+.|+|||||||+++|.+|+..|+.+.
T Consensus 385 ~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~~---------------- 448 (489)
T CHL00195 385 EIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYEK---------------- 448 (489)
T ss_pred eEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHcC----------------
Confidence 999999999999999999999776433 57899999999999999999999999999888763
Q ss_pred cCCCCCHHHHHHHHHHhcCC--Cchhhhhhc
Q psy11009 304 LDLPVSQRDFEEALARCNKS--VAREDLENI 332 (863)
Q Consensus 304 ~~~~Vt~~Df~~AL~~v~ps--vs~~~l~~~ 332 (863)
.+++.+||+.|+.++.|. ...+.++.+
T Consensus 449 --~~lt~~dl~~a~~~~~Pls~~~~e~i~~~ 477 (489)
T CHL00195 449 --REFTTDDILLALKQFIPLAQTEKEQIEAL 477 (489)
T ss_pred --CCcCHHHHHHHHHhcCCCcccCHHHHHHH
Confidence 479999999999999997 355555554
No 31
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=7.1e-34 Score=320.89 Aligned_cols=215 Identities=19% Similarity=0.330 Sum_probs=191.3
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|-++|.+|. +-+....|+|+| |.||||||++|+++++ .+|+.+.++.+ ...|
T Consensus 163 ~pl~~~~~~~~~Gl~~pkgvLL~---------GppGTGKT~LAkalA~~l~~~fi~i~~s~l--------------~~k~ 219 (398)
T PTZ00454 163 LPLTCPELYEQIGIDPPRGVLLY---------GPPGTGKTMLAKAVAHHTTATFIRVVGSEF--------------VQKY 219 (398)
T ss_pred HHhcCHHHHHhcCCCCCceEEEE---------CCCCCCHHHHHHHHHHhcCCCEEEEehHHH--------------HHHh
Confidence 5778999998 777778899999 9999999999999998 45666655555 7788
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEc
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQ 209 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaA 209 (863)
+|+++..++.+|..+ ...+||||||||+|+++.+|.. ....+++.+||.+||++.... +|+||+|
T Consensus 220 ~ge~~~~lr~lf~~A--------~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~-~v~VI~a 290 (398)
T PTZ00454 220 LGEGPRMVRDVFRLA--------RENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTT-NVKVIMA 290 (398)
T ss_pred cchhHHHHHHHHHHH--------HhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCC-CEEEEEe
Confidence 999999999999864 5678999999999999988832 234578889999999987654 8999999
Q ss_pred cCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 210 KGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 210 TN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~ 287 (863)
||+|+.||||++| |||++|+|++|+.++|..||+.|+.++.+..++|+..+|..|+|||||||+++|++|++.|+|+.
T Consensus 291 TN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~ 370 (398)
T PTZ00454 291 TNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKN 370 (398)
T ss_pred cCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999 99999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCC
Q psy11009 288 IIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKS 323 (863)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ps 323 (863)
...|+++||..|+.++...
T Consensus 371 -----------------~~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 371 -----------------RYVILPKDFEKGYKTVVRK 389 (398)
T ss_pred -----------------CCccCHHHHHHHHHHHHhc
Confidence 4589999999999998655
No 32
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-33 Score=303.45 Aligned_cols=160 Identities=46% Similarity=0.672 Sum_probs=149.2
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
+++.|..+++||+|+++++++|++.|.+|+.+|++|...| .||+|||||||||||||+||||+|++.++.|+.|.+++|
T Consensus 142 v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSEl 221 (406)
T COG1222 142 VEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSEL 221 (406)
T ss_pred eccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHH
Confidence 4678999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC--chhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~--~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
..+|+|+..+.+|++|++|+..+||||||||||+|..+|-.. +.+...+|++-+||.+|||+.+.+ +|-||+||
T Consensus 222 VqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~----nvKVI~AT 297 (406)
T COG1222 222 VQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRG----NVKVIMAT 297 (406)
T ss_pred HHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCC----CeEEEEec
Confidence 999999999999999999999999999999999999988533 334556788899999999997754 49999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
|||+.+|
T Consensus 298 NR~D~LD 304 (406)
T COG1222 298 NRPDILD 304 (406)
T ss_pred CCccccC
Confidence 9999988
No 33
>KOG0729|consensus
Probab=100.00 E-value=9e-34 Score=293.38 Aligned_cols=216 Identities=20% Similarity=0.300 Sum_probs=195.5
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
-||--.|+-|. |-|.-.-|+|+| |.|||||||.|+++|. .-||-+.+-+| ...
T Consensus 194 e~pll~perfv~lgidppkgvlly---------gppgtgktl~aravanrtdacfirvigsel--------------vqk 250 (435)
T KOG0729|consen 194 ELPLLHPERFVNLGIDPPKGVLLY---------GPPGTGKTLCARAVANRTDACFIRVIGSEL--------------VQK 250 (435)
T ss_pred hccccCHHHHhhcCCCCCCceEEe---------CCCCCchhHHHHHHhcccCceEEeehhHHH--------------HHH
Confidence 46777899999 999999999999 9999999999999997 67999999999 889
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---c---hhHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---R---GSKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~---~~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
|||+--.-||.+|+-+ .....|||||||+|++++.|-. + +..|..-++++||||+...+ ++-|+.
T Consensus 251 yvgegarmvrelf~ma--------rtkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprg-nikvlm 321 (435)
T KOG0729|consen 251 YVGEGARMVRELFEMA--------RTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRG-NIKVLM 321 (435)
T ss_pred HhhhhHHHHHHHHHHh--------cccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCC-CeEEEe
Confidence 9999999999999854 6677899999999999999922 2 33445556778889998766 999999
Q ss_pred ccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
|||||+.|||||+| |+|++++|.+||.++|..||++|.+.+.+..++-++-||++|+.-|||||+.+|.+|.+.|+|.
T Consensus 322 atnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir~ellarlcpnstgaeirsvcteagmfaira 401 (435)
T KOG0729|consen 322 ATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRA 401 (435)
T ss_pred ecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCC
Q psy11009 287 KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKS 323 (863)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ps 323 (863)
. +...|..||+.|+.++..+
T Consensus 402 r-----------------rk~atekdfl~av~kvvkg 421 (435)
T KOG0729|consen 402 R-----------------RKVATEKDFLDAVNKVVKG 421 (435)
T ss_pred H-----------------hhhhhHHHHHHHHHHHHHH
Confidence 6 4578999999999998765
No 34
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=6.6e-33 Score=286.64 Aligned_cols=213 Identities=22% Similarity=0.300 Sum_probs=186.4
Q ss_pred hhhccccCCccccc--ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHH
Q psy11009 56 ILTFLTSKYPSVFL--LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAI 130 (863)
Q Consensus 56 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~ 130 (863)
|+.|| +-|+.|- -|+ -+|.| |.||||||++||+.|. .-|++++-++|
T Consensus 136 i~~yL--enPe~Fg~WAPk----nVLFy---------GppGTGKTm~Akalane~kvp~l~vkat~l------------- 187 (368)
T COG1223 136 IMEYL--ENPERFGDWAPK----NVLFY---------GPPGTGKTMMAKALANEAKVPLLLVKATEL------------- 187 (368)
T ss_pred HHHHh--hChHHhcccCcc----eeEEE---------CCCCccHHHHHHHHhcccCCceEEechHHH-------------
Confidence 44555 3588887 675 46888 9999999999999986 55667777777
Q ss_pred HHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc----chhHhHHHHHHHHhhccCCCCCCeEE
Q psy11009 131 TLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL----RGSKTFRTLCIHKYRLLTFPSTPVQY 206 (863)
Q Consensus 131 ~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~----~~~~~v~n~lL~~ld~~~~~~~~Viv 206 (863)
+.-+||.--.+++.+++|+ ...+|||+||||+|+|+-.|.- +....++|.||++|||+.... +|+.
T Consensus 188 -iGehVGdgar~Ihely~rA--------~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ene-GVvt 257 (368)
T COG1223 188 -IGEHVGDGARRIHELYERA--------RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENE-GVVT 257 (368)
T ss_pred -HHHHhhhHHHHHHHHHHHH--------HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCC-ceEE
Confidence 5556999999999999997 8889999999999999988732 778899999999999999655 9999
Q ss_pred EEccCCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHH-HHHHHHHHHHH
Q psy11009 207 SIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITN-VCRDASMMSMR 285 (863)
Q Consensus 207 IaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~-lv~~Aal~air 285 (863)
|||||+|+.||+|+..||+.-|+|.+|+.++|..|++.|++++|+.-+.+++.+|.+|.||||.||+. +++.|...|++
T Consensus 258 IaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ 337 (368)
T COG1223 258 IAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIKEKVLKTALHRAIA 337 (368)
T ss_pred EeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 66666667777
Q ss_pred hhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCC
Q psy11009 286 RKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKS 323 (863)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ps 323 (863)
+. +..|+.+||+.|+.+.++.
T Consensus 338 ed-----------------~e~v~~edie~al~k~r~~ 358 (368)
T COG1223 338 ED-----------------REKVEREDIEKALKKERKR 358 (368)
T ss_pred hc-----------------hhhhhHHHHHHHHHhhccc
Confidence 76 5579999999999986654
No 35
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=7.9e-33 Score=312.66 Aligned_cols=219 Identities=23% Similarity=0.347 Sum_probs=193.0
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|-++|.+|. +.+....|+|+| |.||||||++|+++++ .+|+.+....| .+.|
T Consensus 149 ~pl~~~~~~~~~g~~~p~gvLL~---------GppGtGKT~lAkaia~~~~~~~i~v~~~~l--------------~~~~ 205 (389)
T PRK03992 149 LPLKKPELFEEVGIEPPKGVLLY---------GPPGTGKTLLAKAVAHETNATFIRVVGSEL--------------VQKF 205 (389)
T ss_pred HHhhCHHHHHhcCCCCCCceEEE---------CCCCCChHHHHHHHHHHhCCCEEEeehHHH--------------hHhh
Confidence 5788999998 888888999999 9999999999999998 55666655555 6788
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEc
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQ 209 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaA 209 (863)
+|+++..++.+|..+ ....||||||||+|+++..|.. ....+.+.+||.+++++.... +|+||+|
T Consensus 206 ~g~~~~~i~~~f~~a--------~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~-~v~VI~a 276 (389)
T PRK03992 206 IGEGARLVRELFELA--------REKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRG-NVKIIAA 276 (389)
T ss_pred ccchHHHHHHHHHHH--------HhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCC-CEEEEEe
Confidence 999999999999864 4567999999999999988843 223566778888888877554 8999999
Q ss_pred cCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 210 KGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 210 TN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~ 287 (863)
||+++.||+|++| |||+.|+|++|+.++|.+||+.|++++++..++++..||..|+|||||||+.+|++|++.|+++.
T Consensus 277 Tn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~ 356 (389)
T PRK03992 277 TNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLKAICTEAGMFAIRDD 356 (389)
T ss_pred cCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999 99999999999999999999999999998888999999999999999999999999999999985
Q ss_pred hcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchh
Q psy11009 288 IIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVARE 327 (863)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~ 327 (863)
...|+.+||.+|+.+++++...+
T Consensus 357 -----------------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 -----------------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred -----------------CCCcCHHHHHHHHHHHhcccccc
Confidence 45799999999999999875543
No 36
>KOG0727|consensus
Probab=99.97 E-value=2.6e-32 Score=280.85 Aligned_cols=212 Identities=20% Similarity=0.331 Sum_probs=189.4
Q ss_pred ccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhhh
Q psy11009 61 TSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALTV 136 (863)
Q Consensus 61 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~v 136 (863)
|--.-.|+- +-|.-.-|+|+| |+||||||.+||++|. .+||-++|-+. ...|+
T Consensus 174 plt~~~ly~qigidpprgvlly---------gppg~gktml~kava~~t~a~firvvgsef--------------vqkyl 230 (408)
T KOG0727|consen 174 PLTHADLYKQIGIDPPRGVLLY---------GPPGTGKTMLAKAVANHTTAAFIRVVGSEF--------------VQKYL 230 (408)
T ss_pred cchHHHHHHHhCCCCCcceEEe---------CCCCCcHHHHHHHHhhccchheeeeccHHH--------------HHHHh
Confidence 333334444 556667899999 9999999999999998 78999999998 88999
Q ss_pred hhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEcc
Q psy11009 137 GSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQK 210 (863)
Q Consensus 137 g~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaAT 210 (863)
|+--.-||++|.-+ ...+|+||||||+|+|+.+|-. .+..|++-+||+||||+.... +|-||.||
T Consensus 231 gegprmvrdvfrla--------kenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~-nvkvimat 301 (408)
T KOG0727|consen 231 GEGPRMVRDVFRLA--------KENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTT-NVKVIMAT 301 (408)
T ss_pred ccCcHHHHHHHHHH--------hccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCccc-ceEEEEec
Confidence 99999999999754 7788999999999999999922 345678889999999998766 99999999
Q ss_pred CCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhh
Q psy11009 211 GIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKI 288 (863)
Q Consensus 211 N~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~ 288 (863)
||.+.||||++| |+|++|+||+||..+++-+|.....++.+.+++|++.+..+-+..|||||..+|++|.+.|+|+.
T Consensus 302 nradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~aicqeagm~avr~n- 380 (408)
T KOG0727|consen 302 NRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADINAICQEAGMLAVREN- 380 (408)
T ss_pred CcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHHHHHHHHhHHHHHhc-
Confidence 999999999999 99999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCChhhhccCCccccCCCCCHHHHHHHHHHhc
Q psy11009 289 IGLTPEQIRQIPKEELDLPVSQRDFEEALARCN 321 (863)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ 321 (863)
+-.|...||++|-....
T Consensus 381 ----------------ryvvl~kd~e~ay~~~v 397 (408)
T KOG0727|consen 381 ----------------RYVVLQKDFEKAYKTVV 397 (408)
T ss_pred ----------------ceeeeHHHHHHHHHhhc
Confidence 44788999999987654
No 37
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.97 E-value=2.2e-32 Score=310.94 Aligned_cols=214 Identities=20% Similarity=0.317 Sum_probs=189.0
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|-+.|.+|. +-+....|+|+| |.||||||++|+++++ .+|+.+.+..| .+.|
T Consensus 201 lpl~~p~~~~~~gi~~p~gVLL~---------GPPGTGKT~LAraIA~el~~~fi~V~~seL--------------~~k~ 257 (438)
T PTZ00361 201 LPLTHPELYDDIGIKPPKGVILY---------GPPGTGKTLLAKAVANETSATFLRVVGSEL--------------IQKY 257 (438)
T ss_pred hhhhCHHHHHhcCCCCCcEEEEE---------CCCCCCHHHHHHHHHHhhCCCEEEEecchh--------------hhhh
Confidence 6778898888 777788899999 9999999999999998 56666665555 5678
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---c---hhHhHHHHHHHHhhccCCCCCCeEEEEc
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---R---GSKTFRTLCIHKYRLLTFPSTPVQYSIQ 209 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~---~~~~v~n~lL~~ld~~~~~~~~VivIaA 209 (863)
+|+.+..++.+|..+ ....||||||||+|+++.+|.. + ...+.+.+||.+||++.... +|.||+|
T Consensus 258 ~Ge~~~~vr~lF~~A--------~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~-~V~VI~A 328 (438)
T PTZ00361 258 LGDGPKLVRELFRVA--------EENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRG-DVKVIMA 328 (438)
T ss_pred cchHHHHHHHHHHHH--------HhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccC-CeEEEEe
Confidence 999999999999864 4568999999999999988832 2 23566778899999887554 8999999
Q ss_pred cCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 210 KGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 210 TN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~ 287 (863)
||+++.||+|++| |||++|+|++||.++|.+||+.|+.++.+..++|++.+|..|+|||||||+.+|++|++.|+|+.
T Consensus 329 TNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~ 408 (438)
T PTZ00361 329 TNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIKAICTEAGLLALRER 408 (438)
T ss_pred cCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 99999999999999999999999999999889999999999999999999999999999999986
Q ss_pred hcCCChhhhccCCccccCCCCCHHHHHHHHHHhcC
Q psy11009 288 IIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNK 322 (863)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~p 322 (863)
...|+.+||..|+.++..
T Consensus 409 -----------------r~~Vt~~D~~~A~~~v~~ 426 (438)
T PTZ00361 409 -----------------RMKVTQADFRKAKEKVLY 426 (438)
T ss_pred -----------------CCccCHHHHHHHHHHHHh
Confidence 457999999999999854
No 38
>KOG0740|consensus
Probab=99.97 E-value=7.1e-32 Score=301.25 Aligned_cols=240 Identities=28% Similarity=0.400 Sum_probs=204.5
Q ss_pred hccccCCccccc-c--cceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHH
Q psy11009 58 TFLTSKYPSVFL-L--PKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAIT 131 (863)
Q Consensus 58 ~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~ 131 (863)
..+|..-|.+|. | |.+ |.||| |.||+|||+++++||. -+|.++.--.|
T Consensus 169 vi~p~lr~d~F~glr~p~r---glLLf---------GPpgtGKtmL~~aiAsE~~atff~iSassL-------------- 222 (428)
T KOG0740|consen 169 VILPLLRPDLFLGLREPVR---GLLLF---------GPPGTGKTMLAKAIATESGATFFNISASSL-------------- 222 (428)
T ss_pred hhhcccchHhhhccccccc---hhhee---------cCCCCchHHHHHHHHhhhcceEeeccHHHh--------------
Confidence 356777788888 3 443 99999 9999999999999998 67778887778
Q ss_pred HHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCC-CCCeEEE
Q psy11009 132 LALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFP-STPVQYS 207 (863)
Q Consensus 132 ~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~-~~~VivI 207 (863)
.+.|||++|+.+|.+|.- +....|+|+||||+|.++.+|.. ..+.++..+||.++++.... +++|+||
T Consensus 223 tsK~~Ge~eK~vralf~v--------Ar~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvi 294 (428)
T KOG0740|consen 223 TSKYVGESEKLVRALFKV--------ARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVI 294 (428)
T ss_pred hhhccChHHHHHHHHHHH--------HHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEE
Confidence 778899999999999974 38889999999999999999944 55679999999999887754 6699999
Q ss_pred EccCCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 208 IQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 208 aATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
||||+||.||.|++|||.+++|||+||.++|..+|+.++++.+.. .+.|++.||+.|+||||+||..+|++|++..+|.
T Consensus 295 gaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~kea~~~p~r~ 374 (428)
T KOG0740|consen 295 GATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKEAAMGPLRE 374 (428)
T ss_pred ecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHHhhcCchhh
Confidence 999999999999999999999999999999999999999776554 5689999999999999999999999999999887
Q ss_pred hhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccc
Q psy11009 287 KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVE 335 (863)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~ 335 (863)
.... ..+.. ......++++..||..|+..++|+++.+.+++|.+.
T Consensus 375 ~~~~---~~~~~-~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~ 419 (428)
T KOG0740|consen 375 LGGT---TDLEF-IDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKW 419 (428)
T ss_pred cccc---hhhhh-cchhccCCCCcchHHHHHHhhccccCccccchhHHH
Confidence 5321 01111 122235689999999999999999999999888644
No 39
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=5.4e-31 Score=303.46 Aligned_cols=233 Identities=20% Similarity=0.164 Sum_probs=187.0
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCcccccccccccc-------------cchhcccchhhhccCcch
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM-------------NFLSLVLPLLAEEHGKLK 125 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------------~~~~~~~~~l~~~~gk~s 125 (863)
+|-+||.+|. +=+..+.|+|+| |.||||||++||++++. .|+++.++.|
T Consensus 200 lp~~~~~l~~~~gl~~p~GILLy---------GPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eL-------- 262 (512)
T TIGR03689 200 LPFLHPELYREYDLKPPKGVLLY---------GPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPEL-------- 262 (512)
T ss_pred HHhhCHHHHHhccCCCCcceEEE---------CCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhh--------
Confidence 6778999998 556667899999 99999999999999883 2445555544
Q ss_pred hHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc----chhHhHHHHHHHHhhccCCCC
Q psy11009 126 FKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL----RGSKTFRTLCIHKYRLLTFPS 201 (863)
Q Consensus 126 ~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~----~~~~~v~n~lL~~ld~~~~~~ 201 (863)
++.|+|++++++|.+|.++.... ....||||||||+|+++.+|.. +...+++++||.+||++....
T Consensus 263 ------l~kyvGete~~ir~iF~~Ar~~a----~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~ 332 (512)
T TIGR03689 263 ------LNKYVGETERQIRLIFQRAREKA----SDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLD 332 (512)
T ss_pred ------cccccchHHHHHHHHHHHHHHHh----hcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCC
Confidence 77899999999999998865443 4567999999999999998854 334678899999999998655
Q ss_pred CCeEEEEccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhc-cCCCCC---------cccHHHHh--------
Q psy11009 202 TPVQYSIQKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLK-EVKVDP---------AVDLTHIA-------- 261 (863)
Q Consensus 202 ~~VivIaATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~-~~~l~~---------dvdl~~LA-------- 261 (863)
+|+||+|||+++.||||++| |||++|+|++|+.++|.+||+.|+. .+++.. ..++..++
T Consensus 333 -~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l~~~l~~~~g~~~a~~~al~~~av~~~~ 411 (512)
T TIGR03689 333 -NVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPLDADLAEFDGDREATAAALIQRAVDHLY 411 (512)
T ss_pred -ceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCchHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999 9999999999999999999999995 345421 11222222
Q ss_pred ---------------------hhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHh
Q psy11009 262 ---------------------SQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARC 320 (863)
Q Consensus 262 ---------------------~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v 320 (863)
..++.+|||+|+++|..|...|+.+.+... ...|+++||..|+...
T Consensus 412 a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~-------------~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 412 ATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGG-------------QVGLRIEHLLAAVLDE 478 (512)
T ss_pred hhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcC-------------CcCcCHHHHHHHHHHh
Confidence 236789999999999999999998865221 3489999999999875
Q ss_pred -------cCCCchhhhhhcc
Q psy11009 321 -------NKSVAREDLENIT 333 (863)
Q Consensus 321 -------~psvs~~~l~~~~ 333 (863)
.++..++++.+..
T Consensus 479 ~~~~~~~~~~~~~~~w~~~~ 498 (512)
T TIGR03689 479 FRESEDLPNTTNPDDWARIS 498 (512)
T ss_pred hcccccCCCCCCHHHHhhhh
Confidence 3346677777763
No 40
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.96 E-value=1.2e-29 Score=284.46 Aligned_cols=212 Identities=26% Similarity=0.364 Sum_probs=183.3
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|-++|.+|. +.+....|+|+| |.||||||++|+++++. +|+.+..+.+ ...|
T Consensus 140 ~~~~~~~~~~~~g~~~p~gvLL~---------GppGtGKT~lakaia~~l~~~~~~v~~~~l--------------~~~~ 196 (364)
T TIGR01242 140 LPLKHPELFEEVGIEPPKGVLLY---------GPPGTGKTLLAKAVAHETNATFIRVVGSEL--------------VRKY 196 (364)
T ss_pred HHhcCHHHHHhcCCCCCceEEEE---------CCCCCCHHHHHHHHHHhCCCCEEecchHHH--------------HHHh
Confidence 5788899998 888888899999 99999999999999984 3444433333 5678
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEc
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQ 209 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaA 209 (863)
+|..+..++.+|..+ ....||||||||+|+++..|.. ....+.+.+++.+++++.... +|+||+|
T Consensus 197 ~g~~~~~i~~~f~~a--------~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~-~v~vI~t 267 (364)
T TIGR01242 197 IGEGARLVREIFELA--------KEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRG-NVKVIAA 267 (364)
T ss_pred hhHHHHHHHHHHHHH--------HhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCC-CEEEEEe
Confidence 999999999999754 4568999999999999988743 123456678888888876554 8999999
Q ss_pred cCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 210 KGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 210 TN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~ 287 (863)
||+++.||+|++| |||+.|+|++|+.++|.+||+.|+.++.+..++++..||..|+||||+||+.+|++|++.|+++.
T Consensus 268 tn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~ 347 (364)
T TIGR01242 268 TNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE 347 (364)
T ss_pred cCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999 99999999999999999999999998888888999999999999999999999999999999986
Q ss_pred hcCCChhhhccCCccccCCCCCHHHHHHHHHHh
Q psy11009 288 IIGLTPEQIRQIPKEELDLPVSQRDFEEALARC 320 (863)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v 320 (863)
...|+.+||..|++++
T Consensus 348 -----------------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -----------------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred -----------------CCccCHHHHHHHHHHh
Confidence 4579999999999875
No 41
>KOG0651|consensus
Probab=99.96 E-value=1.3e-30 Score=275.63 Aligned_cols=214 Identities=24% Similarity=0.369 Sum_probs=192.6
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
-||=+-|.||. +-|...-|.|+| |.||+||||+|++|++ .|||-++--.| .+.
T Consensus 149 elpl~np~lf~rvgIk~Pkg~ll~---------GppGtGKTlla~~Vaa~mg~nfl~v~ss~l--------------v~k 205 (388)
T KOG0651|consen 149 ELPLTNPELFLRVGIKPPKGLLLY---------GPPGTGKTLLARAVAATMGVNFLKVVSSAL--------------VDK 205 (388)
T ss_pred EeeccCchhccccCCCCCceeEEe---------CCCCCchhHHHHHHHHhcCCceEEeeHhhh--------------hhh
Confidence 37888999999 899999999999 9999999999999998 68888777777 889
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
|+|++-+.+|+.|..+ ....|||||+||+|+++++|.+ .+..+.+-.||.|||++...+ +|=+|.
T Consensus 206 yiGEsaRlIRemf~yA--------~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~-rVk~Im 276 (388)
T KOG0651|consen 206 YIGESARLIRDMFRYA--------REVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLH-RVKTIM 276 (388)
T ss_pred hcccHHHHHHHHHHHH--------hhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcc-cccEEE
Confidence 9999999999999854 6677999999999999999955 233455567888999998877 999999
Q ss_pred ccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
|||+|+.|||||+| |+|+++++|+|+...|..|++.|-..+..-..+|.+.+.+.++||.|||+.++|++|.+.++++
T Consensus 277 atNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~ 356 (388)
T KOG0651|consen 277 ATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPE 356 (388)
T ss_pred ecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccChHHHhhhcccccccccch
Confidence 99999999999999 9999999999999999999999998887778899999999999999999999999999999987
Q ss_pred hhcCCChhhhccCCccccCCCCCHHHHHHHHHHhc
Q psy11009 287 KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCN 321 (863)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ 321 (863)
. ...+-++||..++.++.
T Consensus 357 ~-----------------~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 357 E-----------------RDEVLHEDFMKLVRKQA 374 (388)
T ss_pred h-----------------hHHHhHHHHHHHHHHHH
Confidence 5 34678899999998764
No 42
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.96 E-value=3.7e-29 Score=273.62 Aligned_cols=195 Identities=13% Similarity=0.036 Sum_probs=160.6
Q ss_pred cccCCcccccccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhhh
Q psy11009 60 LTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALTV 136 (863)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~v 136 (863)
+...|+.+ +-++...|+|+| |.||||||++|+++++ .|||.+.+|+| ++.|+
T Consensus 135 i~kn~l~~--~~ik~PlgllL~---------GPPGcGKTllAraiA~elg~~~i~vsa~eL--------------~sk~v 189 (413)
T PLN00020 135 IAKNFLAL--PNIKVPLILGIW---------GGKGQGKSFQCELVFKKMGIEPIVMSAGEL--------------ESENA 189 (413)
T ss_pred HHhhhhhc--cCCCCCeEEEee---------CCCCCCHHHHHHHHHHHcCCCeEEEEHHHh--------------hcCcC
Confidence 34455544 557888999999 9999999999999999 78899999999 88889
Q ss_pred hhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHH-HHHHHHhhccC-----------CCC
Q psy11009 137 GSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFR-TLCIHKYRLLT-----------FPS 201 (863)
Q Consensus 137 g~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~-n~lL~~ld~~~-----------~~~ 201 (863)
|++|+++|.+|..+.... ....+||||||||||+++.+|++ ....+++ .+||+.||+.. ...
T Consensus 190 GEsEk~IR~~F~~A~~~a---~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~ 266 (413)
T PLN00020 190 GEPGKLIRQRYREAADII---KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEI 266 (413)
T ss_pred CcHHHHHHHHHHHHHHHh---hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccC
Confidence 999999999998752221 13468999999999999999854 3446776 79999988631 234
Q ss_pred CCeEEEEccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCC----CCHHHHHHH
Q psy11009 202 TPVQYSIQKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDG----YSGADITNV 275 (863)
Q Consensus 202 ~~VivIaATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG----~SGADI~~l 275 (863)
.+|+||+|||+|+.|||||+| |||+.| .+||.++|.+||+.|+++..+. ..|+..|+..++| |+||--..+
T Consensus 267 ~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l~-~~dv~~Lv~~f~gq~~Df~GAlrar~ 343 (413)
T PLN00020 267 PRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGVS-REDVVKLVDTFPGQPLDFFGALRARV 343 (413)
T ss_pred CCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCCC-HHHHHHHHHcCCCCCchhhhHHHHHH
Confidence 589999999999999999999 999965 5899999999999999988776 6889999999987 788888877
Q ss_pred HHHHHHHHHH
Q psy11009 276 CRDASMMSMR 285 (863)
Q Consensus 276 v~~Aal~air 285 (863)
..++...-+.
T Consensus 344 yd~~v~~~i~ 353 (413)
T PLN00020 344 YDDEVRKWIA 353 (413)
T ss_pred HHHHHHHHHH
Confidence 7777444443
No 43
>KOG0734|consensus
Probab=99.95 E-value=1.9e-28 Score=272.77 Aligned_cols=157 Identities=40% Similarity=0.638 Sum_probs=144.8
Q ss_pred hcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc
Q psy11009 701 QKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779 (863)
Q Consensus 701 ~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~ 779 (863)
++..+++|+|+.|.+++|++|.+.| -.|+.|.-|..+| +-|+||||+||||||||+||||+|.+.++|||+.+++++.
T Consensus 296 ~~~~nv~F~dVkG~DEAK~ELeEiV-efLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 296 EQMKNVTFEDVKGVDEAKQELEEIV-EFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFD 374 (752)
T ss_pred hhhcccccccccChHHHHHHHHHHH-HHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchh
Confidence 4556889999999999999999955 5788888888776 7889999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 780 SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
..|+|...+++|.+|..|+..+||||||||||++.++|.....+ ..+.+++|||..|||+...+. |+||+|||+|
T Consensus 375 Em~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeG----iIvigATNfp 449 (752)
T KOG0734|consen 375 EMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEG----IIVIGATNFP 449 (752)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCCc----eEEEeccCCh
Confidence 99999999999999999999999999999999999999776655 889999999999999987654 9999999999
Q ss_pred CCCC
Q psy11009 860 WEGA 863 (863)
Q Consensus 860 ~~ID 863 (863)
+.+|
T Consensus 450 e~LD 453 (752)
T KOG0734|consen 450 EALD 453 (752)
T ss_pred hhhh
Confidence 9987
No 44
>KOG0727|consensus
Probab=99.95 E-value=6.9e-28 Score=248.30 Aligned_cols=159 Identities=42% Similarity=0.628 Sum_probs=146.3
Q ss_pred hcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc
Q psy11009 701 QKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779 (863)
Q Consensus 701 ~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~ 779 (863)
...|.+++.|++|++-+|+++++++.+|+.+.++|+.+| .|++|+|||||||||||+||+|+|+.....|+++.++++.
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 346788999999999999999999999999999999999 8999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC--CchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecC
Q psy11009 780 SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~--~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN 857 (863)
.+|.|+..+.++.+|..|+.++|+||||||||+|+.+|=. .+.+...+|++-+||.+|||+... .+|-||++||
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~----~nvkvimatn 302 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQT----TNVKVIMATN 302 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcc----cceEEEEecC
Confidence 9999999999999999999999999999999999988732 233455678999999999999665 4599999999
Q ss_pred CCCCCC
Q psy11009 858 FPWEGA 863 (863)
Q Consensus 858 ~P~~ID 863 (863)
+.+.+|
T Consensus 303 radtld 308 (408)
T KOG0727|consen 303 RADTLD 308 (408)
T ss_pred cccccC
Confidence 998887
No 45
>KOG0732|consensus
Probab=99.95 E-value=1.1e-27 Score=287.61 Aligned_cols=242 Identities=24% Similarity=0.315 Sum_probs=198.3
Q ss_pred hccccCCccccc-ccceeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchh---HHHHHHH
Q psy11009 58 TFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKF---KEAITLA 133 (863)
Q Consensus 58 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~---~e~~~~~ 133 (863)
.++|=-||++|. +-|--.-|+|++ |.|||||||-|++.|-. +...--|.+| +.|.-++
T Consensus 281 Vl~PLlyPE~f~~~~itpPrgvL~~---------GppGTGkTl~araLa~~---------~s~~~~kisffmrkgaD~ls 342 (1080)
T KOG0732|consen 281 VLLPLLYPEFFDNFNITPPRGVLFH---------GPPGTGKTLMARALAAA---------CSRGNRKISFFMRKGADCLS 342 (1080)
T ss_pred HHhHhhhhhHhhhcccCCCcceeec---------CCCCCchhHHHHhhhhh---------hcccccccchhhhcCchhhc
Confidence 468889999999 888888899999 99999999999887752 1111112222 2344599
Q ss_pred hhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEcc
Q psy11009 134 LTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQK 210 (863)
Q Consensus 134 ~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaAT 210 (863)
.+||+.|.+.|.+|+. +.+..|+||||||||.|+..|.+ ..+..++++||..|||+.+.+ .|+|||||
T Consensus 343 kwvgEaERqlrllFee--------A~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRg-qVvvigAT 413 (1080)
T KOG0732|consen 343 KWVGEAERQLRLLFEE--------AQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRG-QVVVIGAT 413 (1080)
T ss_pred cccCcHHHHHHHHHHH--------HhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCC-ceEEEccc
Confidence 9999999999999985 49999999999999999999966 678999999999999999887 99999999
Q ss_pred CCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 211 GIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 211 N~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~ 287 (863)
|||+.+|||++| |||+.+||++|+.+.|.+|+.+|..+.... ...-+..||..|.||-||||+.+|.+|++.++++.
T Consensus 414 nRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~ 493 (1080)
T KOG0732|consen 414 NRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRS 493 (1080)
T ss_pred CCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhccc
Confidence 999999999999 999999999999999999999999877633 33446889999999999999999999999999985
Q ss_pred hcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchh
Q psy11009 288 IIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVARE 327 (863)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~ 327 (863)
.........+-... .....|...||..|+.++.|+..+.
T Consensus 494 ~Pq~y~s~~kl~~d-~~~ikV~~~~f~~A~~~i~ps~~R~ 532 (1080)
T KOG0732|consen 494 FPQIYSSSDKLLID-VALIKVEVRDFVEAMSRITPSSRRS 532 (1080)
T ss_pred cCeeeccccccccc-chhhhhhhHhhhhhhhccCCCCCcc
Confidence 43222221111111 1122389999999999999986664
No 46
>KOG0737|consensus
Probab=99.94 E-value=2.2e-27 Score=257.38 Aligned_cols=156 Identities=49% Similarity=0.786 Sum_probs=147.1
Q ss_pred CCccccccchHHHHHHHHHHhhcCCCChhhhhccC--CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccc
Q psy11009 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR--RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKY 782 (863)
Q Consensus 705 ~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~--~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~ 782 (863)
.++|+||+|++.+++.+++.|.+|+++|++|...+ +|++|||||||||||||++|+|+|++.|..|+.|+.+.+.++|
T Consensus 88 ~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KW 167 (386)
T KOG0737|consen 88 GVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKW 167 (386)
T ss_pred eeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhh
Confidence 57899999999999999999999999999997544 8899999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 783 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 783 ~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.|+.++.++.+|..|....|+||||||+|.+...| ..++|++.+.+.++|+..+||+...+ ...|+|++|||||.++
T Consensus 168 fgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~--~~rVlVlgATNRP~Dl 244 (386)
T KOG0737|consen 168 FGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKD--SERVLVLGATNRPFDL 244 (386)
T ss_pred HHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCC--CceEEEEeCCCCCccH
Confidence 99999999999999999999999999999999999 66789999999999999999998754 3459999999999998
Q ss_pred C
Q psy11009 863 A 863 (863)
Q Consensus 863 D 863 (863)
|
T Consensus 245 D 245 (386)
T KOG0737|consen 245 D 245 (386)
T ss_pred H
Confidence 7
No 47
>KOG0726|consensus
Probab=99.94 E-value=3e-27 Score=247.70 Aligned_cols=160 Identities=43% Similarity=0.625 Sum_probs=145.9
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
+++.|..++.|++|++.+.++|.+.+.+|+.||++|+..+ .|++||+|||+||||||.||+|+|+.....|+++-++++
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseL 255 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSEL 255 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHH
Confidence 5788999999999999999999999999999999999998 899999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
..+|.|+..+.+|++|..|...+|+|+||||||++..+|-..+ .....+|..-+||+|+||+...++ |-||+||
T Consensus 256 iQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgD----vKvimAT 331 (440)
T KOG0726|consen 256 IQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGD----VKVIMAT 331 (440)
T ss_pred HHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCC----eEEEEec
Confidence 9999999999999999999999999999999999998884322 223345666699999999977554 9999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
|+.+.+|
T Consensus 332 nrie~LD 338 (440)
T KOG0726|consen 332 NRIETLD 338 (440)
T ss_pred ccccccC
Confidence 9999887
No 48
>KOG0740|consensus
Probab=99.94 E-value=3.1e-26 Score=256.17 Aligned_cols=177 Identities=58% Similarity=0.910 Sum_probs=167.2
Q ss_pred cCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHH
Q psy11009 684 SYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVA 763 (863)
Q Consensus 684 ~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA 763 (863)
...++....+....+|....+++.|+|+.|++.+++.+.+++.||+..|+.|.+++.|.+++||+||||+|||+|++|||
T Consensus 128 ~~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiA 207 (428)
T KOG0740|consen 128 VKEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIA 207 (428)
T ss_pred hccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHH
Confidence 44567778888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCC
Q psy11009 764 TECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSA 843 (863)
Q Consensus 764 ~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~ 843 (863)
.+++..|+.++++.+.++|+|+.++.++.+|..|+...|+||||||||.++..| ..++++..+|+..+||.++++....
T Consensus 208 sE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~ 286 (428)
T KOG0740|consen 208 TESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSA 286 (428)
T ss_pred hhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCC
Confidence 999999999999999999999999999999999999999999999999999999 6678999999999999999988765
Q ss_pred CCCCCceEEEEecCCCCCCC
Q psy11009 844 EDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 844 ~~~~~~VvVIaTTN~P~~ID 863 (863)
.+ ..|+||+|||+||.+|
T Consensus 287 ~~--drvlvigaTN~P~e~D 304 (428)
T KOG0740|consen 287 PD--DRVLVIGATNRPWELD 304 (428)
T ss_pred CC--CeEEEEecCCCchHHH
Confidence 43 4799999999999987
No 49
>KOG0728|consensus
Probab=99.94 E-value=2.4e-26 Score=236.75 Aligned_cols=163 Identities=42% Similarity=0.582 Sum_probs=148.6
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEec
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~ 775 (863)
-.++++.|..+++-++|++.+.++|.+.|.+|..||++|+..| ..++|+|||||||||||.||+++|++..+.|+++++
T Consensus 135 LMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsg 214 (404)
T KOG0728|consen 135 LMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSG 214 (404)
T ss_pred HHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEech
Confidence 3467899999999999999999999999999999999999988 667999999999999999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC--CchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q psy11009 776 STLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVL 853 (863)
Q Consensus 776 s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~--~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVI 853 (863)
+++..+|+|+..+.+|++|-+|+..+|+|||+||||+|...|.. ++.+...+|+.-+||.++||+... +++-||
T Consensus 215 selvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat----knikvi 290 (404)
T KOG0728|consen 215 SELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT----KNIKVI 290 (404)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc----cceEEE
Confidence 99999999999999999999999999999999999999888743 233455678889999999999765 458999
Q ss_pred EecCCCCCCC
Q psy11009 854 AATNFPWEGA 863 (863)
Q Consensus 854 aTTN~P~~ID 863 (863)
+||||.+-+|
T Consensus 291 matnridild 300 (404)
T KOG0728|consen 291 MATNRIDILD 300 (404)
T ss_pred Eecccccccc
Confidence 9999988766
No 50
>KOG0729|consensus
Probab=99.94 E-value=3.3e-26 Score=237.41 Aligned_cols=160 Identities=39% Similarity=0.592 Sum_probs=146.1
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
++..|..+++|++|..++.+.|++.+.+|+.+|+.|-.++ .|++|||||||||||||++|||+|+..+..|+.|-++++
T Consensus 168 veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigsel 247 (435)
T KOG0729|consen 168 VEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSEL 247 (435)
T ss_pred eecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHH
Confidence 5678999999999999999999999999999999999988 899999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC--CchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~--~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
..+|+|+..+.++++|++|+..+.|||||||||++.+.|=. .+.+...+|++-+|+.|+|++.+. +++-|+++|
T Consensus 248 vqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr----gnikvlmat 323 (435)
T KOG0729|consen 248 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR----GNIKVLMAT 323 (435)
T ss_pred HHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC----CCeEEEeec
Confidence 99999999999999999999999999999999999887722 233444567888999999999764 458999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
|+|..+|
T Consensus 324 nrpdtld 330 (435)
T KOG0729|consen 324 NRPDTLD 330 (435)
T ss_pred CCCCCcC
Confidence 9999987
No 51
>KOG0652|consensus
Probab=99.93 E-value=1.5e-25 Score=231.99 Aligned_cols=160 Identities=41% Similarity=0.600 Sum_probs=145.9
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
+...|...++||+|++.+.+++.++|++|+.|++-|+..+ +|++|+|+|||||||||++|||+|.+.+..|+.+.++.+
T Consensus 162 vDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQL 241 (424)
T KOG0652|consen 162 VDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQL 241 (424)
T ss_pred eccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHH
Confidence 4567888999999999999999999999999999999998 999999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
..+|+|...+.+|..|..|+..+|+||||||+|+|..+|-.+. .+...+|+.-+||.++||+.+..+ |-||++|
T Consensus 242 VQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~----vKviAAT 317 (424)
T KOG0652|consen 242 VQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDR----VKVIAAT 317 (424)
T ss_pred HhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccc----eEEEeec
Confidence 9999999999999999999999999999999999988874322 234456788899999999987654 8999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
||.+-+|
T Consensus 318 NRvDiLD 324 (424)
T KOG0652|consen 318 NRVDILD 324 (424)
T ss_pred ccccccC
Confidence 9998776
No 52
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.92 E-value=1.1e-25 Score=233.36 Aligned_cols=156 Identities=33% Similarity=0.453 Sum_probs=138.6
Q ss_pred hcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc
Q psy11009 701 QKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS 780 (863)
Q Consensus 701 ~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~ 780 (863)
+..+..+++|++|++++|+.-.- |...|..|+.|..+. +++||||||||||||++|+|+|++.+.|++.+.+.++.+
T Consensus 113 e~~~~it~ddViGqEeAK~kcrl-i~~yLenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liG 189 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRL-IMEYLENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIG 189 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHH-HHHHhhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHH
Confidence 45678999999999999987654 556778888887765 579999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCC
Q psy11009 781 KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 781 ~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~ 860 (863)
.++|+..+.++.+++.|+..+|||+||||+|+|+-.|.-.+-......+++.||+.|||+....+ |+.||+||+|+
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneG----VvtIaaTN~p~ 265 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEG----VVTIAATNRPE 265 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCc----eEEEeecCChh
Confidence 99999999999999999999999999999999998876544445567899999999999986544 99999999999
Q ss_pred CCC
Q psy11009 861 EGA 863 (863)
Q Consensus 861 ~ID 863 (863)
.+|
T Consensus 266 ~LD 268 (368)
T COG1223 266 LLD 268 (368)
T ss_pred hcC
Confidence 987
No 53
>KOG0731|consensus
Probab=99.92 E-value=3e-25 Score=260.99 Aligned_cols=157 Identities=43% Similarity=0.633 Sum_probs=142.6
Q ss_pred cCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc
Q psy11009 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS 780 (863)
Q Consensus 702 k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~ 780 (863)
....++|.|+.|.+++|++|.|.| ..|+.|+.|...| +.|+|+||+||||||||+||+|+|.+.++||+.++++++..
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V-~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFV-KFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHH-HHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 445689999999999999999955 5889999999888 88999999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCC---CCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecC
Q psy11009 781 KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRG---SESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857 (863)
Q Consensus 781 ~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~---~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN 857 (863)
.+.|....+++.+|..|+..+||||||||||++...|+ ..+.+......++|||..||++... ..|+|+|+||
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~----~~vi~~a~tn 458 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS----KGVIVLAATN 458 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC----CcEEEEeccC
Confidence 99999899999999999999999999999999999994 3334555667899999999999765 3499999999
Q ss_pred CCCCCC
Q psy11009 858 FPWEGA 863 (863)
Q Consensus 858 ~P~~ID 863 (863)
+|+-+|
T Consensus 459 r~d~ld 464 (774)
T KOG0731|consen 459 RPDILD 464 (774)
T ss_pred CccccC
Confidence 999887
No 54
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.91 E-value=3.2e-24 Score=247.64 Aligned_cols=165 Identities=36% Similarity=0.612 Sum_probs=146.5
Q ss_pred HHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCc----
Q psy11009 695 LERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTT---- 769 (863)
Q Consensus 695 ~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~---- 769 (863)
......++.|..+|+||+|++.++++|.+.|.+|+.+|+.|...+ .+++|+|||||||||||++|+++|++++.+
T Consensus 168 ~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~ 247 (512)
T TIGR03689 168 VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE 247 (512)
T ss_pred HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc
Confidence 344566789999999999999999999999999999999999877 778999999999999999999999998654
Q ss_pred ------EEEEecccccccccchhHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc
Q psy11009 770 ------FFNVCSSTLTSKYRGESEKLVRLLFEMARFY----APSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG 839 (863)
Q Consensus 770 ------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~----~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~ 839 (863)
|+.+..+++..+|.|+.++.++.+|..++.. .|+||||||+|.++.+|+.+..++..++++++||.+||+
T Consensus 248 ~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 248 TGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred cCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 6677888899999999999999999988764 699999999999999887765667778899999999999
Q ss_pred CCCCCCCCCceEEEEecCCCCCCC
Q psy11009 840 LSSAEDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 840 l~~~~~~~~~VvVIaTTN~P~~ID 863 (863)
+... ..|+||+|||+|+.||
T Consensus 328 l~~~----~~ViVI~ATN~~d~LD 347 (512)
T TIGR03689 328 VESL----DNVIVIGASNREDMID 347 (512)
T ss_pred cccC----CceEEEeccCChhhCC
Confidence 8653 3489999999999998
No 55
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.91 E-value=7.6e-24 Score=239.57 Aligned_cols=160 Identities=43% Similarity=0.645 Sum_probs=143.9
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
+...|..+|+||+|++.++++|.+.+.+|+.+|+.|...+ .+++|+||+||||||||++|+++|++++.+|+.+.++++
T Consensus 136 ~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l 215 (398)
T PTZ00454 136 MSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF 215 (398)
T ss_pred ccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 4567899999999999999999999999999999999888 788999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
..+|.|+.+..++.+|..|+..+|+||||||||.++.+|.... .+....+++.+||.+||++... ..|+||+||
T Consensus 216 ~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~----~~v~VI~aT 291 (398)
T PTZ00454 216 VQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQT----TNVKVIMAT 291 (398)
T ss_pred HHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCC----CCEEEEEec
Confidence 9999999999999999999999999999999999998774322 2334567889999999987553 348999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
|+|+.||
T Consensus 292 N~~d~LD 298 (398)
T PTZ00454 292 NRADTLD 298 (398)
T ss_pred CCchhCC
Confidence 9999997
No 56
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.90 E-value=9.6e-22 Score=240.95 Aligned_cols=141 Identities=16% Similarity=0.070 Sum_probs=101.3
Q ss_pred CcCCCcccccccccccc---cc--hhcccc-hhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcE
Q psy11009 91 PVVGSGTYLKHKSPIKM---NF--LSLVLP-LLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPT 164 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~---~~--~~~~~~-~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~ 164 (863)
|.||||||.++..+++. +. ..+..+ .+..+.|.+ .+-+.|.|+.|.+++.+|+.. ....+++
T Consensus 215 G~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l-----~ag~~~~ge~e~~lk~ii~e~-------~~~~~~~ 282 (852)
T TIGR03345 215 GEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLL-----QAGASVKGEFENRLKSVIDEV-------KASPQPI 282 (852)
T ss_pred CCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhh-----hcccccchHHHHHHHHHHHHH-------HhcCCCe
Confidence 99999999999999984 00 111112 233344332 223468999999999999853 1235799
Q ss_pred EEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhccceEEEecCCCHHHHH
Q psy11009 165 LAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 165 IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
||||||++.|.+.+.+......-|.|+..|. . +.+.+||||+..+ .+|+||+|||+ .|+|+.|+.+++.
T Consensus 283 ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~----~-G~l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~ 356 (852)
T TIGR03345 283 ILFIDEAHTLIGAGGQAGQGDAANLLKPALA----R-GELRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAI 356 (852)
T ss_pred EEEEeChHHhccCCCccccccHHHHhhHHhh----C-CCeEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHH
Confidence 9999999999887754333334444554442 2 2699999999854 49999999996 7999999999999
Q ss_pred HHHHHHhccC
Q psy11009 240 ALLKINLKEV 249 (863)
Q Consensus 240 ~IL~~~l~~~ 249 (863)
.||+.+...+
T Consensus 357 ~iL~~~~~~~ 366 (852)
T TIGR03345 357 RMLRGLAPVL 366 (852)
T ss_pred HHHHHHHHhh
Confidence 9987766543
No 57
>KOG0651|consensus
Probab=99.89 E-value=4.5e-23 Score=218.69 Aligned_cols=162 Identities=42% Similarity=0.611 Sum_probs=144.9
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
...+.....+|+.+.|+..+..++.+.|.+|+..|++|...+ .||++++||||||+|||++|+++|..+++.|+.+.++
T Consensus 121 m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss 200 (388)
T KOG0651|consen 121 MSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSS 200 (388)
T ss_pred hhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHh
Confidence 334455678999999999999999999999999999999987 8999999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q psy11009 777 TLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLA 854 (863)
Q Consensus 777 ~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIa 854 (863)
.+.++|.||+.+.+|+.|..|+...||||||||||++.++|-+.+ .+...++++=+|+.+||++...++ |-+|+
T Consensus 201 ~lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~r----Vk~Im 276 (388)
T KOG0651|consen 201 ALVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHR----VKTIM 276 (388)
T ss_pred hhhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhccc----ccEEE
Confidence 999999999999999999999999999999999999999884322 344556777778889988876544 88999
Q ss_pred ecCCCCCCC
Q psy11009 855 ATNFPWEGA 863 (863)
Q Consensus 855 TTN~P~~ID 863 (863)
|||+|+.+|
T Consensus 277 atNrpdtLd 285 (388)
T KOG0651|consen 277 ATNRPDTLD 285 (388)
T ss_pred ecCCccccc
Confidence 999999887
No 58
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=3e-23 Score=240.67 Aligned_cols=156 Identities=40% Similarity=0.599 Sum_probs=141.3
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccccc
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK 781 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~ 781 (863)
...++|.|+.|.+++|+++.+.| -+++.|.-|...| +-|+|+||+||||||||+||+|+|.+.++||+.++++++...
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiV-dfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELV-DFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHH-HHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 57889999999999999999955 5788888887776 788999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC--chhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 782 YRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 782 ~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~--~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
|+|-...++|.+|+.|+.++||||||||||++...|+.+ +.++....+++|||..||++... ..|+||++||||
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~----~gviviaaTNRp 298 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGN----EGVIVIAATNRP 298 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCC----CceEEEecCCCc
Confidence 999999999999999999999999999999999988633 44566667999999999999743 349999999999
Q ss_pred CCCC
Q psy11009 860 WEGA 863 (863)
Q Consensus 860 ~~ID 863 (863)
+-+|
T Consensus 299 dVlD 302 (596)
T COG0465 299 DVLD 302 (596)
T ss_pred ccch
Confidence 9876
No 59
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.89 E-value=9.1e-23 Score=230.92 Aligned_cols=160 Identities=46% Similarity=0.676 Sum_probs=142.2
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
+...|..+|+||+|+++++++|.+.+.+|+.+|+.|+..+ .+++|+||+||||||||++|+++|++++.+|+.++++++
T Consensus 122 ~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l 201 (389)
T PRK03992 122 VIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL 201 (389)
T ss_pred ecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH
Confidence 3567889999999999999999999999999999999888 788999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCch--hhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESE--HEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~--~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
..+|.|+.+..++.+|..++...|+||||||||.++.+|+.... .....+.+.+||..+|++... ..|+||+||
T Consensus 202 ~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~----~~v~VI~aT 277 (389)
T PRK03992 202 VQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPR----GNVKIIAAT 277 (389)
T ss_pred hHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCC----CCEEEEEec
Confidence 99999999999999999999999999999999999987754322 233456777888888887543 358999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
|+|+.||
T Consensus 278 n~~~~ld 284 (389)
T PRK03992 278 NRIDILD 284 (389)
T ss_pred CChhhCC
Confidence 9999887
No 60
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.88 E-value=2.3e-21 Score=238.11 Aligned_cols=141 Identities=14% Similarity=0.095 Sum_probs=103.9
Q ss_pred CcCCCcccccccccccccch-----h-cccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcE
Q psy11009 91 PVVGSGTYLKHKSPIKMNFL-----S-LVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPT 164 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~-----~-~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~ 164 (863)
|.||||||+++..+++.-.- . ...+.+..+.|.+ .+-..|.|+.|.+++.+|+.. ....+|+
T Consensus 206 G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l-----~ag~~~~g~~e~~lk~~~~~~-------~~~~~~~ 273 (857)
T PRK10865 206 GEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGAL-----VAGAKYRGEFEERLKGVLNDL-------AKQEGNV 273 (857)
T ss_pred CCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhh-----hhccchhhhhHHHHHHHHHHH-------HHcCCCe
Confidence 99999999999999985110 0 0233343344332 334578999999999999752 1346899
Q ss_pred EEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhccceEEEecCCCHHHHH
Q psy11009 165 LAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 165 IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
||||||++.|.+.+.+.......+.|...+ .. +.+.+||||+..+ .+|+|+.|||+ .|+++.|+.+++.
T Consensus 274 ILfIDEih~l~~~~~~~~~~d~~~~lkp~l----~~-g~l~~IgaTt~~e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~ 347 (857)
T PRK10865 274 ILFIDELHTMVGAGKADGAMDAGNMLKPAL----AR-GELHCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTI 347 (857)
T ss_pred EEEEecHHHhccCCCCccchhHHHHhcchh----hc-CCCeEEEcCCCHHHHHHhhhcHHHHhhCC-EEEeCCCCHHHHH
Confidence 999999999987764433344445554444 12 2799999999987 48999999998 5889999999999
Q ss_pred HHHHHHhccC
Q psy11009 240 ALLKINLKEV 249 (863)
Q Consensus 240 ~IL~~~l~~~ 249 (863)
.||+.+..++
T Consensus 348 ~iL~~l~~~~ 357 (857)
T PRK10865 348 AILRGLKERY 357 (857)
T ss_pred HHHHHHhhhh
Confidence 9998877544
No 61
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.88 E-value=1.6e-22 Score=221.83 Aligned_cols=123 Identities=20% Similarity=0.198 Sum_probs=106.3
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccccchhHHHHHHHHHHHHh-----CCCeEEEEcCCCccc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARF-----YAPSTIFIDEIDSLC 814 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~-----~~p~ILfIDEID~l~ 814 (863)
+++++++||||||||||++|+++|++++.+++.++++++.++|.|++++++|.+|..|+. .+||||||||||+++
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~ 225 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGA 225 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcC
Confidence 788999999999999999999999999999999999999999999999999999999975 469999999999999
Q ss_pred ccCCCCchhhHH-HHHHHHHHHHHhcCCC--------CCCCCCceEEEEecCCCCCCC
Q psy11009 815 SRRGSESEHEAS-RRVKSELLVQMDGLSS--------AEDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 815 ~~R~~~~~~e~~-~rv~~~LL~~lD~l~~--------~~~~~~~VvVIaTTN~P~~ID 863 (863)
++|+..+ .... +.+..+||.+||+... ..+....|+||+|||+|+.||
T Consensus 226 g~r~~~~-~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LD 282 (413)
T PLN00020 226 GRFGTTQ-YTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLY 282 (413)
T ss_pred CCCCCCC-cchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCC
Confidence 9987443 4443 4455899999997421 123356699999999999987
No 62
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.88 E-value=1.1e-22 Score=231.73 Aligned_cols=163 Identities=44% Similarity=0.601 Sum_probs=144.3
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEec
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~ 775 (863)
...+++.|..+|+||+|++.++++|.+++.+|+.+|+.|+..+ .+++++||+||||||||++|+++|++++.+|+.+.+
T Consensus 171 ~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 171 VMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred hcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEec
Confidence 3346788999999999999999999999999999999999888 788999999999999999999999999999999999
Q ss_pred ccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEE
Q psy11009 776 STLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVL 853 (863)
Q Consensus 776 s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVI 853 (863)
+++..+|.|+.+..++.+|..|+...|+||||||||.++.+|.... ......+++.+||.+||++... ..|.||
T Consensus 251 seL~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~----~~V~VI 326 (438)
T PTZ00361 251 SELIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR----GDVKVI 326 (438)
T ss_pred chhhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc----CCeEEE
Confidence 9999999999999999999999999999999999999998775321 2233456778899999988543 348999
Q ss_pred EecCCCCCCC
Q psy11009 854 AATNFPWEGA 863 (863)
Q Consensus 854 aTTN~P~~ID 863 (863)
+|||+++.||
T Consensus 327 ~ATNr~d~LD 336 (438)
T PTZ00361 327 MATNRIESLD 336 (438)
T ss_pred EecCChHHhh
Confidence 9999999886
No 63
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.88 E-value=1.2e-21 Score=237.98 Aligned_cols=173 Identities=12% Similarity=0.021 Sum_probs=118.4
Q ss_pred eeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhH--HHHHHHhhhhhHHHHHHHHhhcc
Q psy11009 73 AIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFK--EAITLALTVGSSLNLYRSITNRG 150 (863)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~--e~~~~~~~vg~se~~~r~i~~~~ 150 (863)
+.+...|+| |.||||||++++.+++. +..-..|......--.++. ...+-+.|.|+.|.+++.+|+.+
T Consensus 201 ~~~~n~lL~---------G~pG~GKT~l~~~la~~-~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~ 270 (731)
T TIGR02639 201 RKKNNPLLV---------GEPGVGKTAIAEGLALR-IAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEI 270 (731)
T ss_pred CCCCceEEE---------CCCCCCHHHHHHHHHHH-HHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHH
Confidence 345577888 99999999999999986 1111233222121112333 23334679999999999999853
Q ss_pred cceeeeccCCCCcEEEEEeccccccccccc-chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhcc
Q psy11009 151 FYIEDYEVSPPGPTLAVAKMFSSLAVQKLL-RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRL 224 (863)
Q Consensus 151 ~~l~~~~~~~~~P~IlFiDEiDal~~~R~~-~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRF 224 (863)
....|+||||||++.|...+.. +......+.|+..|. ...+.+|||||..+ .+|+|+.|||
T Consensus 271 --------~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~-----~g~i~~IgaTt~~e~~~~~~~d~al~rRf 337 (731)
T TIGR02639 271 --------EKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS-----SGKLRCIGSTTYEEYKNHFEKDRALSRRF 337 (731)
T ss_pred --------hccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh-----CCCeEEEEecCHHHHHHHhhhhHHHHHhC
Confidence 3346999999999999876633 323334455555442 12699999999743 6899999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 225 EKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 225 D~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
+ .|+|+.|+.+++.+||+.+.....-... -.++...|..++..+
T Consensus 338 ~-~i~v~~p~~~~~~~il~~~~~~~e~~~~----------v~i~~~al~~~~~ls 381 (731)
T TIGR02639 338 Q-KIDVGEPSIEETVKILKGLKEKYEEFHH----------VKYSDEALEAAVELS 381 (731)
T ss_pred c-eEEeCCCCHHHHHHHHHHHHHHHHhccC----------cccCHHHHHHHHHhh
Confidence 8 6999999999999999987754210000 136677776665544
No 64
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.87 E-value=2.2e-21 Score=234.15 Aligned_cols=159 Identities=11% Similarity=0.049 Sum_probs=108.7
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhcc--CcchhHHHHHHHhhhhhHHHHHHHHhhcccc
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEH--GKLKFKEAITLALTVGSSLNLYRSITNRGFY 152 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~--gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~ 152 (863)
....|++ |.||||||.+|..+++- .+.-..|....+. =.++...-.+-..|.|+.+.+++.+|+..
T Consensus 207 ~~n~LLv---------GppGvGKT~lae~la~~-i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l-- 274 (758)
T PRK11034 207 KNNPLLV---------GESGVGKTAIAEGLAWR-IVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQL-- 274 (758)
T ss_pred CCCeEEE---------CCCCCCHHHHHHHHHHH-HHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHH--
Confidence 3456777 99999999999998862 1111223221100 01122222333568999999999999742
Q ss_pred eeeeccCCCCcEEEEEeccccccccccc-chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhccce
Q psy11009 153 IEDYEVSPPGPTLAVAKMFSSLAVQKLL-RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRLEK 226 (863)
Q Consensus 153 l~~~~~~~~~P~IlFiDEiDal~~~R~~-~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRFD~ 226 (863)
...+|+||||||++.|+..+.. +....+.|.|...+. . ..+.||||||.++ .+|+||.|||+
T Consensus 275 ------~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~----~-g~i~vIgATt~~E~~~~~~~D~AL~rRFq- 342 (758)
T PRK11034 275 ------EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS----S-GKIRVIGSTTYQEFSNIFEKDRALARRFQ- 342 (758)
T ss_pred ------HhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh----C-CCeEEEecCChHHHHHHhhccHHHHhhCc-
Confidence 3457899999999999877643 333344444443332 2 2799999999976 58999999997
Q ss_pred EEEecCCCHHHHHHHHHHHhccCCCCCcccH
Q psy11009 227 RIYIPLPSKAGREALLKINLKEVKVDPAVDL 257 (863)
Q Consensus 227 ~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl 257 (863)
.|+|+.|+.+++..||+.+..++....++++
T Consensus 343 ~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i 373 (758)
T PRK11034 343 KIDITEPSIEETVQIINGLKPKYEAHHDVRY 373 (758)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhhhccCCCc
Confidence 7999999999999999988765543334443
No 65
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.87 E-value=5.3e-22 Score=229.27 Aligned_cols=151 Identities=26% Similarity=0.329 Sum_probs=130.6
Q ss_pred CCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccc
Q psy11009 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKY 782 (863)
Q Consensus 704 p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~ 782 (863)
+..+|++|+|++.+|+.+.+.... ++......+ .+++|+||+||||||||++|+++|++++.+++.++++.+.++|
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~---~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~ 299 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTS---FSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGI 299 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHH---hhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccc
Confidence 567899999999999999875532 222333444 6779999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 783 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 783 ~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
+|+++.+++.+|..|+..+||||||||||.++.++...+++....+++++||.+|+.. ...|+||||||+|+.|
T Consensus 300 vGese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~------~~~V~vIaTTN~~~~L 373 (489)
T CHL00195 300 VGESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK------KSPVFVVATANNIDLL 373 (489)
T ss_pred cChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC------CCceEEEEecCChhhC
Confidence 9999999999999999999999999999999887655556677889999999999742 3459999999999998
Q ss_pred C
Q psy11009 863 A 863 (863)
Q Consensus 863 D 863 (863)
|
T Consensus 374 d 374 (489)
T CHL00195 374 P 374 (489)
T ss_pred C
Confidence 7
No 66
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.87 E-value=3.7e-22 Score=232.71 Aligned_cols=158 Identities=41% Similarity=0.628 Sum_probs=139.6
Q ss_pred hcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc
Q psy11009 701 QKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779 (863)
Q Consensus 701 ~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~ 779 (863)
...|..+|+||+|++++++++.+.+.+ +.+++.|...+ .+++|+||+||||||||++|+++|.+++.+|+.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 446789999999999999999997765 78888888765 7779999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC--chhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecC
Q psy11009 780 SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~--~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN 857 (863)
..+.|..+..++.+|+.++..+||||||||||.++.+|+.+ +.+....+++++||.+||++... ..|+||+|||
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~----~~v~vI~aTn 201 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTN----TGVIVIAATN 201 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCC----CCeEEEEecC
Confidence 99999999999999999999999999999999999887542 23455568899999999988653 3489999999
Q ss_pred CCCCCC
Q psy11009 858 FPWEGA 863 (863)
Q Consensus 858 ~P~~ID 863 (863)
+|+.||
T Consensus 202 ~~~~ld 207 (495)
T TIGR01241 202 RPDVLD 207 (495)
T ss_pred ChhhcC
Confidence 999887
No 67
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.86 E-value=8.3e-20 Score=225.03 Aligned_cols=143 Identities=17% Similarity=0.119 Sum_probs=102.2
Q ss_pred CcCCCccccccccccccc-----chhc-ccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcE
Q psy11009 91 PVVGSGTYLKHKSPIKMN-----FLSL-VLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPT 164 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~-----~~~~-~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~ 164 (863)
|.||||||+++...++.- ...+ ..+.+..+.|.+ .+-+.|.|+.|.+++.+|... ....+|+
T Consensus 201 G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l-----~a~~~~~g~~e~~l~~~l~~~-------~~~~~~~ 268 (852)
T TIGR03346 201 GEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL-----IAGAKYRGEFEERLKAVLNEV-------TKSEGQI 268 (852)
T ss_pred cCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH-----hhcchhhhhHHHHHHHHHHHH-------HhcCCCe
Confidence 999999999999888740 0111 123333333222 334678999999999999853 1235799
Q ss_pred EEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhccceEEEecCCCHHHHH
Q psy11009 165 LAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 165 IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
||||||++.|...+.+.......+.|...+ . ...+.+|||||..+ .+|+|+.|||+. |+|+.|+.+++.
T Consensus 269 ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l----~-~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~p~~~~~~ 342 (852)
T TIGR03346 269 ILFIDELHTLVGAGKAEGAMDAGNMLKPAL----A-RGELHCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPTVEDTI 342 (852)
T ss_pred EEEeccHHHhhcCCCCcchhHHHHHhchhh----h-cCceEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCCCCHHHHH
Confidence 999999999987654433334444444333 2 23799999999974 589999999975 899999999999
Q ss_pred HHHHHHhccCCC
Q psy11009 240 ALLKINLKEVKV 251 (863)
Q Consensus 240 ~IL~~~l~~~~l 251 (863)
.||+.+..++..
T Consensus 343 ~iL~~~~~~~e~ 354 (852)
T TIGR03346 343 SILRGLKERYEV 354 (852)
T ss_pred HHHHHHHHHhcc
Confidence 999988766543
No 68
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.85 E-value=6.7e-21 Score=213.94 Aligned_cols=159 Identities=45% Similarity=0.697 Sum_probs=139.5
Q ss_pred hcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc
Q psy11009 701 QKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779 (863)
Q Consensus 701 ~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~ 779 (863)
...|..+|+||+|+++++++|.+++.+|+.+|+.|...+ .+++|+||+||||||||++|+++|++++.+|+.+.++++.
T Consensus 114 ~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~ 193 (364)
T TIGR01242 114 EERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELV 193 (364)
T ss_pred ccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHH
Confidence 467889999999999999999999999999999999887 7789999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecC
Q psy11009 780 SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN 857 (863)
..|.|+....++.+|..++...|+||||||+|.++.+|.... ......+.+.+++..++++... ..|+||+|||
T Consensus 194 ~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~----~~v~vI~ttn 269 (364)
T TIGR01242 194 RKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPR----GNVKVIAATN 269 (364)
T ss_pred HHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCC----CCEEEEEecC
Confidence 999999999999999999999999999999999987764322 1233456778888888877443 3489999999
Q ss_pred CCCCCC
Q psy11009 858 FPWEGA 863 (863)
Q Consensus 858 ~P~~ID 863 (863)
+|+.+|
T Consensus 270 ~~~~ld 275 (364)
T TIGR01242 270 RPDILD 275 (364)
T ss_pred ChhhCC
Confidence 999876
No 69
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.84 E-value=3.3e-19 Score=219.09 Aligned_cols=151 Identities=13% Similarity=0.059 Sum_probs=104.3
Q ss_pred ceeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccC--cchhHHHHHHHhhhhhHHHHHHHHhhc
Q psy11009 72 KAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHG--KLKFKEAITLALTVGSSLNLYRSITNR 149 (863)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~g--k~s~~e~~~~~~~vg~se~~~r~i~~~ 149 (863)
-+.+...+++ |.||||||.++...++.. ..-..|.-....= .++...-.+-+.|.|+.|.+++.+|+.
T Consensus 197 r~~~~n~lL~---------G~pGvGKTal~~~la~~i-~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~ 266 (821)
T CHL00095 197 RRTKNNPILI---------GEPGVGKTAIAEGLAQRI-VNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDE 266 (821)
T ss_pred ccccCCeEEE---------CCCCCCHHHHHHHHHHHH-HhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHH
Confidence 3456688999 999999999999998851 0001111000000 111122233457899999999999985
Q ss_pred ccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhcc
Q psy11009 150 GFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRL 224 (863)
Q Consensus 150 ~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRF 224 (863)
. ...+|+||||||++.|++.+.......+-+.|...|. . ..+.+||||+..+ ..|+|+.|||
T Consensus 267 ~--------~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~----r-g~l~~IgaTt~~ey~~~ie~D~aL~rRf 333 (821)
T CHL00095 267 I--------QENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA----R-GELQCIGATTLDEYRKHIEKDPALERRF 333 (821)
T ss_pred H--------HhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh----C-CCcEEEEeCCHHHHHHHHhcCHHHHhcc
Confidence 3 3457999999999999877644322334444443432 1 2689999999875 5899999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHh
Q psy11009 225 EKRIYIPLPSKAGREALLKINL 246 (863)
Q Consensus 225 D~~I~i~lPd~~~R~~IL~~~l 246 (863)
+. |.++.|+.++...|++...
T Consensus 334 ~~-I~v~ep~~~e~~aILr~l~ 354 (821)
T CHL00095 334 QP-VYVGEPSVEETIEILFGLR 354 (821)
T ss_pred eE-EecCCCCHHHHHHHHHHHH
Confidence 75 8999999999999998765
No 70
>KOG0732|consensus
Probab=99.83 E-value=8.7e-21 Score=228.53 Aligned_cols=160 Identities=41% Similarity=0.639 Sum_probs=143.9
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHh-----CCcEEE
Q psy11009 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFN 772 (863)
Q Consensus 699 ~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~ 772 (863)
.......+.|++++|++.++.++.+.|..|+.+|++|...+ .|++|+||+||||||||+.|+++|..| .+.|+.
T Consensus 255 p~~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffm 334 (1080)
T KOG0732|consen 255 PLSVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFM 334 (1080)
T ss_pred chhhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhh
Confidence 33445678999999999999999999999999999999888 888999999999999999999999998 467888
Q ss_pred EecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEE
Q psy11009 773 VCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMV 852 (863)
Q Consensus 773 vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvV 852 (863)
-.+++..++|+|+.++.++.+|+.|+...|+|||+||||.+++.|.... ......+++.||..|||+...+ .|+|
T Consensus 335 rkgaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGldsRg----qVvv 409 (1080)
T KOG0732|consen 335 RKGADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDSRG----QVVV 409 (1080)
T ss_pred hcCchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCCCC----ceEE
Confidence 8899999999999999999999999999999999999999999985432 3455679999999999997654 4999
Q ss_pred EEecCCCCCCC
Q psy11009 853 LAATNFPWEGA 863 (863)
Q Consensus 853 IaTTN~P~~ID 863 (863)
|+|||||..+|
T Consensus 410 igATnRpda~d 420 (1080)
T KOG0732|consen 410 IGATNRPDAID 420 (1080)
T ss_pred EcccCCccccc
Confidence 99999999987
No 71
>CHL00176 ftsH cell division protein; Validated
Probab=99.83 E-value=2.7e-20 Score=221.21 Aligned_cols=156 Identities=39% Similarity=0.578 Sum_probs=136.2
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccccc
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK 781 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~ 781 (863)
.+..+|+|++|++++++++.+.+. .+..++.|...+ .+++|+||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~-~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVS-FLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHH-HHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 456899999999999999999765 477888888766 677999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC--chhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 782 YRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 782 ~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~--~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
+.|.....++.+|..|+..+||||||||||.++..|+.+ +.+.....++++||..||++... ..|+||+|||+|
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~----~~ViVIaaTN~~ 331 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGN----KGVIVIAATNRV 331 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCC----CCeeEEEecCch
Confidence 999888899999999999999999999999999877542 23455667899999999988643 348999999999
Q ss_pred CCCC
Q psy11009 860 WEGA 863 (863)
Q Consensus 860 ~~ID 863 (863)
+.+|
T Consensus 332 ~~LD 335 (638)
T CHL00176 332 DILD 335 (638)
T ss_pred Hhhh
Confidence 8776
No 72
>KOG0741|consensus
Probab=99.78 E-value=2.9e-19 Score=199.78 Aligned_cols=149 Identities=32% Similarity=0.446 Sum_probs=121.9
Q ss_pred ccchHHHHHH-HHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCC-cEEEEecccccccccchhH
Q psy11009 711 IAELTDAKRL-LEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGT-TFFNVCSSTLTSKYRGESE 787 (863)
Q Consensus 711 LiGl~~vk~~-L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~-~~i~vs~s~l~~~~~Ge~e 787 (863)
|+|++.--.. .+++...-...|++.+..| ...+|+|||||||||||++||.|.+.++. +=--|+++++.++|+|++|
T Consensus 223 IGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE 302 (744)
T KOG0741|consen 223 IGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESE 302 (744)
T ss_pred cccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccH
Confidence 4555544333 2344455566677878777 77799999999999999999999999975 3455899999999999999
Q ss_pred HHHHHHHHHHHh--------CCCeEEEEcCCCcccccCCCCch-hhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCC
Q psy11009 788 KLVRLLFEMARF--------YAPSTIFIDEIDSLCSRRGSESE-HEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNF 858 (863)
Q Consensus 788 ~~ir~lf~~A~~--------~~p~ILfIDEID~l~~~R~~~~~-~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~ 858 (863)
.++|.+|..|.. ..-.||+|||||+||.+||+... ..+...+++|||..|||+...+ +|+||+-|||
T Consensus 303 ~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLN----NILVIGMTNR 378 (744)
T KOG0741|consen 303 ENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLN----NILVIGMTNR 378 (744)
T ss_pred HHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhh----cEEEEeccCc
Confidence 999999988863 23359999999999999987654 5677889999999999997654 4999999999
Q ss_pred CCCCC
Q psy11009 859 PWEGA 863 (863)
Q Consensus 859 P~~ID 863 (863)
++.||
T Consensus 379 ~DlID 383 (744)
T KOG0741|consen 379 KDLID 383 (744)
T ss_pred hhhHH
Confidence 99987
No 73
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.77 E-value=6.3e-19 Score=220.08 Aligned_cols=127 Identities=23% Similarity=0.314 Sum_probs=101.4
Q ss_pred CCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccc-------------------------
Q psy11009 729 MWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKY------------------------- 782 (863)
Q Consensus 729 l~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~------------------------- 782 (863)
...+.+....| .|++||||+||||||||+||+|+|.++++||+.++++++..++
T Consensus 1616 s~~kP~slrLGl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~ 1695 (2281)
T CHL00206 1616 SHGKPFSLRLALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDR 1695 (2281)
T ss_pred ccCcCHHHHcCCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccccccccccccccccccccc
Confidence 33344545555 7889999999999999999999999999999999999988654
Q ss_pred ----------------cchhH--HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCC
Q psy11009 783 ----------------RGESE--KLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAE 844 (863)
Q Consensus 783 ----------------~Ge~e--~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~ 844 (863)
.++.+ .+++.+|+.|+.++||||||||||+++.+. .....+++||.+||+....
T Consensus 1696 ~~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d-------s~~ltL~qLLneLDg~~~~- 1767 (2281)
T CHL00206 1696 DLDTELLTMMNALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE-------SNYLSLGLLVNSLSRDCER- 1767 (2281)
T ss_pred ccchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc-------cceehHHHHHHHhcccccc-
Confidence 11222 348999999999999999999999998752 1123489999999987532
Q ss_pred CCCCceEEEEecCCCCCCC
Q psy11009 845 DSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 845 ~~~~~VvVIaTTN~P~~ID 863 (863)
.....|+||||||+|+.||
T Consensus 1768 ~s~~~VIVIAATNRPD~LD 1786 (2281)
T CHL00206 1768 CSTRNILVIASTHIPQKVD 1786 (2281)
T ss_pred CCCCCEEEEEeCCCcccCC
Confidence 1245699999999999998
No 74
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.76 E-value=1.8e-18 Score=207.26 Aligned_cols=156 Identities=39% Similarity=0.586 Sum_probs=134.4
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccccc
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK 781 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~ 781 (863)
....+|+++.|.+.+++++.+.+.+ +..+..+...+ ..++|+||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~-~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~ 224 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 224 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHH-hhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHh
Confidence 3456799999999999999997765 45566665444 566899999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC--CchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 782 YRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 782 ~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~--~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
+.|.....++.+|..++..+||||||||||.++.+|+. ++.+....+++++||..||++.... .|+||+|||+|
T Consensus 225 ~~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~----~vivIaaTN~p 300 (644)
T PRK10733 225 FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE----GIIVIAATNRP 300 (644)
T ss_pred hhcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCC----CeeEEEecCCh
Confidence 99999999999999999999999999999999988864 2334556679999999999986543 48999999999
Q ss_pred CCCC
Q psy11009 860 WEGA 863 (863)
Q Consensus 860 ~~ID 863 (863)
+.||
T Consensus 301 ~~lD 304 (644)
T PRK10733 301 DVLD 304 (644)
T ss_pred hhcC
Confidence 9987
No 75
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.73 E-value=2.3e-17 Score=156.46 Aligned_cols=115 Identities=41% Similarity=0.594 Sum_probs=103.6
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccccchhHHHHHHHHHHHHhCC-CeEEEEcCCCcccccCCCCchh
Q psy11009 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYA-PSTIFIDEIDSLCSRRGSESEH 823 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~-p~ILfIDEID~l~~~R~~~~~~ 823 (863)
+||+||||||||++|+.+|+.++.+++.+++.++.+.+.++....++.+|..+.... |+||||||+|.++... .....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 699999999999999999999999999999999998899999999999999998887 9999999999999887 44456
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCCC
Q psy11009 824 EASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 824 e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ID 863 (863)
.....+++.|+..|+..... ...++||+|||.++.||
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~---~~~~~vI~ttn~~~~i~ 116 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSK---NSRVIVIATTNSPDKID 116 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTT---SSSEEEEEEESSGGGSC
T ss_pred cccccccceeeecccccccc---cccceeEEeeCChhhCC
Confidence 77788999999999987653 34599999999999876
No 76
>KOG0742|consensus
Probab=99.72 E-value=3e-17 Score=179.20 Aligned_cols=172 Identities=16% Similarity=0.230 Sum_probs=124.7
Q ss_pred ceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccce
Q psy11009 77 GNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYI 153 (863)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l 153 (863)
.+|+| |+||||||+.|+.+|.. .+--..| |.+..-. -..+-.+-++|+
T Consensus 386 Nilfy---------GPPGTGKTm~ArelAr~SGlDYA~mTG-------GDVAPlG--------~qaVTkiH~lFD----- 436 (630)
T KOG0742|consen 386 NILFY---------GPPGTGKTMFARELARHSGLDYAIMTG-------GDVAPLG--------AQAVTKIHKLFD----- 436 (630)
T ss_pred heeee---------CCCCCCchHHHHHHHhhcCCceehhcC-------CCccccc--------hHHHHHHHHHHH-----
Confidence 46788 99999999999999983 1111111 1111111 122334555664
Q ss_pred eeeccCCCCcEEEEEeccccccccccc-chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecC
Q psy11009 154 EDYEVSPPGPTLAVAKMFSSLAVQKLL-RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPL 232 (863)
Q Consensus 154 ~~~~~~~~~P~IlFiDEiDal~~~R~~-~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~l 232 (863)
|...+.+--+|||||+|+|+.+|.. .++......|...|=.....+..++++.|||+|.+||.|+-.|||..|+||+
T Consensus 437 --WakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpL 514 (630)
T KOG0742|consen 437 --WAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPL 514 (630)
T ss_pred --HHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCC
Confidence 6778888899999999999999966 4444444445444433334444799999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCCC-----------------------ccc----HHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 233 PSKAGREALLKINLKEVKVDP-----------------------AVD----LTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 233 Pd~~~R~~IL~~~l~~~~l~~-----------------------dvd----l~~LA~~TeG~SGADI~~lv~~A 279 (863)
|..++|..||..||.+.-..+ .++ +.+.|++|+||||.+|..++-..
T Consensus 515 PGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~v 588 (630)
T KOG0742|consen 515 PGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASV 588 (630)
T ss_pred CChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHH
Confidence 999999999999995542110 111 56799999999999999998544
No 77
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=9.2e-16 Score=182.70 Aligned_cols=133 Identities=25% Similarity=0.287 Sum_probs=103.3
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC---CcEEEEecccccc-----
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG---TTFFNVCSSTLTS----- 780 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~---~~~i~vs~s~l~~----- 780 (863)
..++|++++...+..+|. +..-......+|...+||.||+|+|||.||+++|..+. ..++++++|++..
T Consensus 491 ~rViGQd~AV~avs~aIr---raRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIR---RARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHH---HHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 459999999999999884 11122233446767899999999999999999999996 7999999999764
Q ss_pred -------cccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCC-----CC
Q psy11009 781 -------KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDS-----SK 848 (863)
Q Consensus 781 -------~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~-----~~ 848 (863)
+|+|..+. ..+.+..+....|||++|||++-.+ .|++-||+.||.-.-++.+ .+
T Consensus 568 rLIGaPPGYVGyeeG--G~LTEaVRr~PySViLlDEIEKAHp------------dV~nilLQVlDdGrLTD~~Gr~VdFr 633 (786)
T COG0542 568 RLIGAPPGYVGYEEG--GQLTEAVRRKPYSVILLDEIEKAHP------------DVFNLLLQVLDDGRLTDGQGRTVDFR 633 (786)
T ss_pred HHhCCCCCCceeccc--cchhHhhhcCCCeEEEechhhhcCH------------HHHHHHHHHhcCCeeecCCCCEEecc
Confidence 35554443 5677778888899999999998755 5999999999854433333 35
Q ss_pred ceEEEEecCC
Q psy11009 849 VVMVLAATNF 858 (863)
Q Consensus 849 ~VvVIaTTN~ 858 (863)
+.+||+|||-
T Consensus 634 NtiIImTSN~ 643 (786)
T COG0542 634 NTIIIMTSNA 643 (786)
T ss_pred eeEEEEeccc
Confidence 5799999994
No 78
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.69 E-value=2.6e-17 Score=156.08 Aligned_cols=120 Identities=17% Similarity=0.161 Sum_probs=100.6
Q ss_pred CcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCC-CcEEE
Q psy11009 91 PVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPP-GPTLA 166 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~-~P~Il 166 (863)
|.||||||++++.+++. .|+.+..+.+ .+.+++.++.+++.+|..+ ... +||||
T Consensus 5 G~~G~GKT~l~~~la~~l~~~~~~i~~~~~--------------~~~~~~~~~~~i~~~~~~~--------~~~~~~~vl 62 (132)
T PF00004_consen 5 GPPGTGKTTLARALAQYLGFPFIEIDGSEL--------------ISSYAGDSEQKIRDFFKKA--------KKSAKPCVL 62 (132)
T ss_dssp SSTTSSHHHHHHHHHHHTTSEEEEEETTHH--------------HTSSTTHHHHHHHHHHHHH--------HHTSTSEEE
T ss_pred CcCCCCeeHHHHHHHhhccccccccccccc--------------ccccccccccccccccccc--------cccccceee
Confidence 99999999999999994 3455555555 4457999999999999874 222 59999
Q ss_pred EEeccccccccc---ccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHh-hccceEEEecC
Q psy11009 167 VAKMFSSLAVQK---LLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALR-RRLEKRIYIPL 232 (863)
Q Consensus 167 FiDEiDal~~~R---~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~All-RRFD~~I~i~l 232 (863)
||||+|.++... .......+.++|+..++.......+++||++||.++.||++++ +|||++|++|+
T Consensus 63 ~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 63 FIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp EEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred eeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 999999999887 2255678889999999988877658999999999999999999 79999999985
No 79
>KOG0744|consensus
Probab=99.67 E-value=1e-16 Score=171.40 Aligned_cols=200 Identities=15% Similarity=0.076 Sum_probs=149.8
Q ss_pred CcCCCcccccccccccc-----cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEE
Q psy11009 91 PVVGSGTYLKHKSPIKM-----NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTL 165 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-----~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~I 165 (863)
|+||||||.+.|+.|.- |=---++-++ -+-+.-.+|++.++|-++|-.+|+.--++.+ ....=..
T Consensus 184 GPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li-------EinshsLFSKWFsESgKlV~kmF~kI~ELv~---d~~~lVf 253 (423)
T KOG0744|consen 184 GPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI-------EINSHSLFSKWFSESGKLVAKMFQKIQELVE---DRGNLVF 253 (423)
T ss_pred CCCCCChhHHHHHHHHhheeeecCccccceEE-------EEehhHHHHHHHhhhhhHHHHHHHHHHHHHh---CCCcEEE
Confidence 99999999999999873 2111112222 1234445888899999999999987544443 4555556
Q ss_pred EEEeccccccccccc-------chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHH
Q psy11009 166 AVAKMFSSLAVQKLL-------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGR 238 (863)
Q Consensus 166 lFiDEiDal~~~R~~-------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R 238 (863)
|+|||+++|+..|.+ .+.-|++|.+|+|||.+.... +|++++|+|..+.||-||..|-|.+.||+.|+..+|
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~-NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai 332 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP-NVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAI 332 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC-CEEEEeccchHHHHHHHhhhHhhheeecCCccHHHH
Confidence 789999999998833 456799999999999998876 999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCC-----C--------cc-----cHHHHhhh-CCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccC
Q psy11009 239 EALLKINLKEVKVD-----P--------AV-----DLTHIASQ-LDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQI 299 (863)
Q Consensus 239 ~~IL~~~l~~~~l~-----~--------dv-----dl~~LA~~-TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~ 299 (863)
.+|++..+..+.-. . .+ ....++.. +.|+||.-|+.+-.-|...-.+
T Consensus 333 ~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~~~gLSGRtlrkLP~Laha~y~~-------------- 398 (423)
T KOG0744|consen 333 YEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELSTVGLSGRTLRKLPLLAHAEYFR-------------- 398 (423)
T ss_pred HHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHhhcCCccchHhhhhHHHHHhccC--------------
Confidence 99999888543111 0 01 12334443 4899999999877665333222
Q ss_pred CccccCCCCCHHHHHHHHHHh
Q psy11009 300 PKEELDLPVSQRDFEEALARC 320 (863)
Q Consensus 300 ~~~~~~~~Vt~~Df~~AL~~v 320 (863)
..+|+.++|+.|+...
T Consensus 399 -----~~~v~~~~fl~al~ea 414 (423)
T KOG0744|consen 399 -----TFTVDLSNFLLALLEA 414 (423)
T ss_pred -----CCccChHHHHHHHHHH
Confidence 2379999999998643
No 80
>KOG0744|consensus
Probab=99.61 E-value=5e-16 Score=166.17 Aligned_cols=154 Identities=30% Similarity=0.361 Sum_probs=121.6
Q ss_pred CccccccchHHHHHHHHHHhhcCCCChhhhhccC--CCCceEEEECCCCCChHHHHHHHHHHhC---------CcEEEEe
Q psy11009 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR--RPWKGVLMVGPPGTGKTMLAKAVATECG---------TTFFNVC 774 (863)
Q Consensus 706 ~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~--~p~kgvLL~GPPGtGKT~LAraIA~el~---------~~~i~vs 774 (863)
--|+.|+--..+|+++..++...+...+..-... .-.|=+||+||||||||+|++|+|..+. ..+++++
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 3577788888999999998876666655443322 2224689999999999999999999983 4789999
Q ss_pred cccccccccchhHHHHHHHHHHHHhC---C--CeEEEEcCCCcccccCCC---CchhhHHHHHHHHHHHHHhcCCCCCCC
Q psy11009 775 SSTLTSKYRGESEKLVRLLFEMARFY---A--PSTIFIDEIDSLCSRRGS---ESEHEASRRVKSELLVQMDGLSSAEDS 846 (863)
Q Consensus 775 ~s~l~~~~~Ge~e~~ir~lf~~A~~~---~--p~ILfIDEID~l~~~R~~---~~~~e~~~rv~~~LL~~lD~l~~~~~~ 846 (863)
+-.++++|.+|+-+.+..+|+..... . -..++|||+++++..|.+ +++....-|+++.+|+|||++....
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~-- 296 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP-- 296 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC--
Confidence 99999999999999999999876532 2 236789999999877742 2334455789999999999997653
Q ss_pred CCceEEEEecCCCCCCC
Q psy11009 847 SKVVMVLAATNFPWEGA 863 (863)
Q Consensus 847 ~~~VvVIaTTN~P~~ID 863 (863)
+|++++|+|-.+.||
T Consensus 297 --NvliL~TSNl~~siD 311 (423)
T KOG0744|consen 297 --NVLILATSNLTDSID 311 (423)
T ss_pred --CEEEEeccchHHHHH
Confidence 499999999887776
No 81
>CHL00181 cbbX CbbX; Provisional
Probab=99.61 E-value=5.6e-15 Score=161.14 Aligned_cols=180 Identities=10% Similarity=0.024 Sum_probs=127.9
Q ss_pred eeEeeecccccccCcCCCcccccccccccccch-hc--ccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccccee
Q psy11009 78 NLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFL-SL--VLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIE 154 (863)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-~~--~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~ 154 (863)
+|++ |.||||||++|++++++-+- .+ .+|.+ ....+.-.+.|+|.++.+++.+|.++
T Consensus 62 ill~---------G~pGtGKT~lAr~la~~~~~~g~~~~~~~~-------~v~~~~l~~~~~g~~~~~~~~~l~~a---- 121 (287)
T CHL00181 62 MSFT---------GSPGTGKTTVALKMADILYKLGYIKKGHLL-------TVTRDDLVGQYIGHTAPKTKEVLKKA---- 121 (287)
T ss_pred EEEE---------CCCCCCHHHHHHHHHHHHHHcCCCCCCceE-------EecHHHHHHHHhccchHHHHHHHHHc----
Confidence 6778 99999999999999885110 00 01111 11122335678999999999999752
Q ss_pred eeccCCCCcEEEEEeccccccccccc-chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhccceEE
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLL-RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRLEKRI 228 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~-~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRFD~~I 228 (863)
.++||||||+|.++..+.. .....++..|+..|+... .+++||+|++... .++|+|+|||+..|
T Consensus 122 -------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~---~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i 191 (287)
T CHL00181 122 -------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR---DDLVVIFAGYKDRMDKFYESNPGLSSRIANHV 191 (287)
T ss_pred -------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC---CCEEEEEeCCcHHHHHHHhcCHHHHHhCCceE
Confidence 3469999999999765432 456778888888886432 3688888876422 34699999999999
Q ss_pred EecCCCHHHHHHHHHHHhccCC--CCCcccHHHHhh----h--CCCCC-HHHHHHHHHHHHHHHHHhhh
Q psy11009 229 YIPLPSKAGREALLKINLKEVK--VDPAVDLTHIAS----Q--LDGYS-GADITNVCRDASMMSMRRKI 288 (863)
Q Consensus 229 ~i~lPd~~~R~~IL~~~l~~~~--l~~dvdl~~LA~----~--TeG~S-GADI~~lv~~Aal~air~~~ 288 (863)
+|+.++.+++.+|++.++.+.. +.++. ...+.. . .+.|. +.++++++..|......|..
T Consensus 192 ~F~~~t~~el~~I~~~~l~~~~~~l~~~~-~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~r~~ 259 (287)
T CHL00181 192 DFPDYTPEELLQIAKIMLEEQQYQLTPEA-EKALLDYIKKRMEQPLFANARSVRNALDRARMRQANRIF 259 (287)
T ss_pred EcCCcCHHHHHHHHHHHHHHhcCCCChhH-HHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999996543 33222 222222 2 24566 89999999999877766643
No 82
>KOG0743|consensus
Probab=99.58 E-value=3.9e-15 Score=166.49 Aligned_cols=149 Identities=25% Similarity=0.355 Sum_probs=119.7
Q ss_pred CCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCc-eEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccccccc
Q psy11009 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWK-GVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYR 783 (863)
Q Consensus 705 ~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~k-gvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~ 783 (863)
+.+|+.|+-..+.|+.|.+-+..+...+++|+..|+||+ |.|||||||||||+++.|+|++++..++-+..++....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n-- 274 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLD-- 274 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCc--
Confidence 388999999999999999999999999999999999986 99999999999999999999999999999988775422
Q ss_pred chhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCch-----h-hHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecC
Q psy11009 784 GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESE-----H-EASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857 (863)
Q Consensus 784 Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~-----~-e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN 857 (863)
.+ ++.+...+ ...+||+|.+||.-+.-++.... + ...+-+++.||..+||+...+.. . =+||+|||
T Consensus 275 --~d--Lr~LL~~t--~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~-E-RIivFTTN 346 (457)
T KOG0743|consen 275 --SD--LRHLLLAT--PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGD-E-RIIVFTTN 346 (457)
T ss_pred --HH--HHHHHHhC--CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCC-c-eEEEEecC
Confidence 22 45555443 35689999999988653322111 1 12446799999999999988742 2 25779999
Q ss_pred CCCCCC
Q psy11009 858 FPWEGA 863 (863)
Q Consensus 858 ~P~~ID 863 (863)
+++.+|
T Consensus 347 h~EkLD 352 (457)
T KOG0743|consen 347 HKEKLD 352 (457)
T ss_pred ChhhcC
Confidence 999998
No 83
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.58 E-value=8.6e-15 Score=159.46 Aligned_cols=183 Identities=11% Similarity=0.000 Sum_probs=128.4
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccc-cchhc--ccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccc
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM-NFLSL--VLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGF 151 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~--~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~ 151 (863)
+.++|++ |.||||||++|+.+++. .-.++ .+|.+ .+.++...+.|+|.++.+++.+|+.+
T Consensus 58 ~~~vll~---------G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v-------~v~~~~l~~~~~g~~~~~~~~~~~~a- 120 (284)
T TIGR02880 58 TLHMSFT---------GNPGTGKTTVALRMAQILHRLGYVRKGHLV-------SVTRDDLVGQYIGHTAPKTKEILKRA- 120 (284)
T ss_pred CceEEEE---------cCCCCCHHHHHHHHHHHHHHcCCcccceEE-------EecHHHHhHhhcccchHHHHHHHHHc-
Confidence 4578888 99999999999888874 00000 01111 11122335678999999999999752
Q ss_pred ceeeeccCCCCcEEEEEeccccccccccc-chhHhHHHHHHHHhhccCCCCCCeEEEEccCC--CCC---ccHHHhhccc
Q psy11009 152 YIEDYEVSPPGPTLAVAKMFSSLAVQKLL-RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI--PWD---IDEALRRRLE 225 (863)
Q Consensus 152 ~l~~~~~~~~~P~IlFiDEiDal~~~R~~-~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~--p~~---LD~AllRRFD 225 (863)
.++||||||++.+...+.. .....+.+.|+..|+... .+++||+||+. ++. ++|+|.+||+
T Consensus 121 ----------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~---~~~~vI~a~~~~~~~~~~~~np~L~sR~~ 187 (284)
T TIGR02880 121 ----------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR---DDLVVILAGYKDRMDSFFESNPGFSSRVA 187 (284)
T ss_pred ----------cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC---CCEEEEEeCCcHHHHHHHhhCHHHHhhCC
Confidence 3479999999999755433 455677888988886432 36888888764 333 4899999999
Q ss_pred eEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhh------CCCC-CHHHHHHHHHHHHHHHHHhh
Q psy11009 226 KRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQ------LDGY-SGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 226 ~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~------TeG~-SGADI~~lv~~Aal~air~~ 287 (863)
..|+||.++.+++..|++.++++.... ..-.+..++.. .+.+ .+.++++++..|......|-
T Consensus 188 ~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~ 257 (284)
T TIGR02880 188 HHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRL 257 (284)
T ss_pred cEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999765332 11123334333 1333 38999999999977766654
No 84
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.58 E-value=1.3e-14 Score=155.88 Aligned_cols=175 Identities=14% Similarity=0.011 Sum_probs=120.6
Q ss_pred CcCCCcccccccccccc----cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEE
Q psy11009 91 PVVGSGTYLKHKSPIKM----NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLA 166 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~----~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~Il 166 (863)
|.||||||++|+.+++. |.++. .+. +...++...+.|+|+++.+++++|.++ .++||
T Consensus 49 GppGtGKTtlA~~ia~~l~~~~~~~~-~~~-------v~~~~~~l~~~~~g~~~~~~~~~~~~a-----------~~~VL 109 (261)
T TIGR02881 49 GNPGTGKTTVARILGKLFKEMNVLSK-GHL-------IEVERADLVGEYIGHTAQKTREVIKKA-----------LGGVL 109 (261)
T ss_pred cCCCCCHHHHHHHHHHHHHhcCcccC-Cce-------EEecHHHhhhhhccchHHHHHHHHHhc-----------cCCEE
Confidence 99999999999999985 11110 011 123445557789999999999999763 24799
Q ss_pred EEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhccceEEEecCCCHHHHHHH
Q psy11009 167 VAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRLEKRIYIPLPSKAGREAL 241 (863)
Q Consensus 167 FiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRFD~~I~i~lPd~~~R~~I 241 (863)
||||+|.|............++.|+..|+... .++++|+|++..+ .++|++++||+..|+||.++.+++.+|
T Consensus 110 ~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~---~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~I 186 (261)
T TIGR02881 110 FIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR---NEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEI 186 (261)
T ss_pred EEechhhhccCCccchHHHHHHHHHHHHhccC---CCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHH
Confidence 99999999743222334567788888886543 2567776654333 378999999999999999999999999
Q ss_pred HHHHhccCCCC-CcccHHHHhhh-------C--CCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 242 LKINLKEVKVD-PAVDLTHIASQ-------L--DGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 242 L~~~l~~~~l~-~dvdl~~LA~~-------T--eG~SGADI~~lv~~Aal~air~~ 287 (863)
++.++...... ++-.++.|+.. + ..-.+..+.+++..|......+.
T Consensus 187 l~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~~r~ 242 (261)
T TIGR02881 187 AERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQAVRL 242 (261)
T ss_pred HHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999654432 11123334322 1 23467888888888766555543
No 85
>CHL00181 cbbX CbbX; Provisional
Probab=99.56 E-value=1.3e-14 Score=158.15 Aligned_cols=136 Identities=23% Similarity=0.317 Sum_probs=105.2
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccC----CCCceEEEECCCCCChHHHHHHHHHHh-------CCcEEEEeccc
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIR----RPWKGVLMVGPPGTGKTMLAKAVATEC-------GTTFFNVCSST 777 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~----~p~kgvLL~GPPGtGKT~LAraIA~el-------~~~~i~vs~s~ 777 (863)
.+++|++++|++|.+++.+.. .++..+..+ .++.++||+||||||||++|+++|..+ ..++++++.++
T Consensus 23 ~~l~Gl~~vK~~i~e~~~~~~-~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 23 EELVGLAPVKTRIREIAALLL-IDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HhcCCcHHHHHHHHHHHHHHH-HHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 469999999999999887633 445544333 233469999999999999999999986 23699999999
Q ss_pred ccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecC
Q psy11009 778 LTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857 (863)
Q Consensus 778 l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN 857 (863)
+.+.|.|+++...+.+++.+. ++||||||+|.+...++ .++..+.++..|+..|+.. ...++||+|++
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~---ggVLfIDE~~~l~~~~~---~~~~~~e~~~~L~~~me~~------~~~~~vI~ag~ 169 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM---GGVLFIDEAYYLYKPDN---ERDYGSEAIEILLQVMENQ------RDDLVVIFAGY 169 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc---CCEEEEEccchhccCCC---ccchHHHHHHHHHHHHhcC------CCCEEEEEeCC
Confidence 999999988877788888764 68999999999975432 2345677889999999643 23467777775
No 86
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.54 E-value=2.4e-14 Score=156.00 Aligned_cols=136 Identities=22% Similarity=0.292 Sum_probs=106.6
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhhccC----CCCceEEEECCCCCChHHHHHHHHHHhC-------CcEEEEecccc
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFKGIR----RPWKGVLMVGPPGTGKTMLAKAVATECG-------TTFFNVCSSTL 778 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~----~p~kgvLL~GPPGtGKT~LAraIA~el~-------~~~i~vs~s~l 778 (863)
+++|++++|++|.+.+.+ +..++.+...+ .+..++||+||||||||++|+++|..+. .+|+.++++++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~-~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAAL-LLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHH-HHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 589999999999998877 44555555444 2445899999999999999999998872 37999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCC
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNF 858 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~ 858 (863)
.+.+.|+++..++.+|+.+. +++|||||++.+...++ .......++..|+..|+.. ...++||+|++.
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~---~gvL~iDEi~~L~~~~~---~~~~~~~~~~~Ll~~le~~------~~~~~vI~a~~~ 169 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM---GGVLFIDEAYYLYRPDN---ERDYGQEAIEILLQVMENQ------RDDLVVILAGYK 169 (284)
T ss_pred hHhhcccchHHHHHHHHHcc---CcEEEEechhhhccCCC---ccchHHHHHHHHHHHHhcC------CCCEEEEEeCCc
Confidence 99999988888888888775 68999999999975432 2345567888999999643 234677777653
No 87
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.54 E-value=2.3e-14 Score=154.10 Aligned_cols=126 Identities=22% Similarity=0.326 Sum_probs=98.6
Q ss_pred cccccchHHHHHHHHHHhhcCCCChhhhh-ccC--CCCceEEEECCCCCChHHHHHHHHHHh-------CCcEEEEeccc
Q psy11009 708 WDDIAELTDAKRLLEEAVVLPMWMPEFFK-GIR--RPWKGVLMVGPPGTGKTMLAKAVATEC-------GTTFFNVCSST 777 (863)
Q Consensus 708 ~~dLiGl~~vk~~L~e~V~~pl~~pe~~~-~~~--~p~kgvLL~GPPGtGKT~LAraIA~el-------~~~~i~vs~s~ 777 (863)
+++++|++.+|+.|.+.+.++.......+ +.. ....++||+||||||||++|+++|+.+ ...++++++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 57799999999999998877755433222 222 234589999999999999999999875 34788999999
Q ss_pred ccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC
Q psy11009 778 LTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL 840 (863)
Q Consensus 778 l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l 840 (863)
+.+.|+|+....++.+|..+. ++||||||+|.|... .+....+..+..|+..|+..
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~---~~VL~IDE~~~L~~~----~~~~~~~~~i~~Ll~~~e~~ 140 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL---GGVLFIDEAYSLARG----GEKDFGKEAIDTLVKGMEDN 140 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc---CCEEEEechhhhccC----CccchHHHHHHHHHHHHhcc
Confidence 999999999998899998775 689999999999642 12233456788888888654
No 88
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.53 E-value=1.2e-13 Score=143.73 Aligned_cols=139 Identities=21% Similarity=0.215 Sum_probs=85.4
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
..+.++.+|.+|+|++|+++++..+.-++. ..+.-+.+..++|||||||||||+||+.||++++.+|..++++
T Consensus 12 ~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~-------aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~ 84 (233)
T PF05496_consen 12 APLAERLRPKSLDEFIGQEHLKGNLKILIR-------AAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGP 84 (233)
T ss_dssp S-HHHHTS-SSCCCS-S-HHHHHHHHHHHH-------HHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECC
T ss_pred hhhHHhcCCCCHHHccCcHHHHhhhHHHHH-------HHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccch
Confidence 345678899999999999999999877662 2222234556999999999999999999999999999998886
Q ss_pred cccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCC-----CCC------
Q psy11009 777 TLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSS-----AED------ 845 (863)
Q Consensus 777 ~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~-----~~~------ 845 (863)
.+... ..+..++.. .....|||||||+.+.. .++..|+..|+...- .+.
T Consensus 85 ~i~k~------~dl~~il~~--l~~~~ILFIDEIHRlnk------------~~qe~LlpamEd~~idiiiG~g~~ar~~~ 144 (233)
T PF05496_consen 85 AIEKA------GDLAAILTN--LKEGDILFIDEIHRLNK------------AQQEILLPAMEDGKIDIIIGKGPNARSIR 144 (233)
T ss_dssp C--SC------HHHHHHHHT----TT-EEEECTCCC--H------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEE
T ss_pred hhhhH------HHHHHHHHh--cCCCcEEEEechhhccH------------HHHHHHHHHhccCeEEEEeccccccceee
Confidence 54221 112222222 23578999999998843 366778888874321 111
Q ss_pred -CCCceEEEEecCCCCCC
Q psy11009 846 -SSKVVMVLAATNFPWEG 862 (863)
Q Consensus 846 -~~~~VvVIaTTN~P~~I 862 (863)
.-.+.-+|+||++...+
T Consensus 145 ~~l~~FTligATTr~g~l 162 (233)
T PF05496_consen 145 INLPPFTLIGATTRAGLL 162 (233)
T ss_dssp EE----EEEEEESSGCCT
T ss_pred ccCCCceEeeeecccccc
Confidence 01235677888776554
No 89
>KOG0742|consensus
Probab=99.53 E-value=4.6e-14 Score=154.62 Aligned_cols=153 Identities=24% Similarity=0.343 Sum_probs=122.6
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~ 779 (863)
..+.+...|+++|-...+.+.|...... .. --+....|.++||||||||||||+.|+-||...|..+-.+.+.++.
T Consensus 346 ~s~~gk~pl~~ViL~psLe~Rie~lA~a-Ta---NTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA 421 (630)
T KOG0742|consen 346 ASSRGKDPLEGVILHPSLEKRIEDLAIA-TA---NTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA 421 (630)
T ss_pred hhhcCCCCcCCeecCHHHHHHHHHHHHH-hc---ccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc
Confidence 3455666799999999999988875421 11 1123346779999999999999999999999999999999998876
Q ss_pred ccccchhHHHHHHHHHHHHhCC-CeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCC
Q psy11009 780 SKYRGESEKLVRLLFEMARFYA-PSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNF 858 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~A~~~~-p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~ 858 (863)
..-. +..-.+..+|+-+.... .-+|||||+|++...|....+++..+..++.||.-. +++.+.+|++.+||+
T Consensus 422 PlG~-qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRT------GdqSrdivLvlAtNr 494 (630)
T KOG0742|consen 422 PLGA-QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT------GDQSRDIVLVLATNR 494 (630)
T ss_pred ccch-HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHh------cccccceEEEeccCC
Confidence 4322 34456788999888655 458899999999999999999999999999998654 566778999999999
Q ss_pred CCCCC
Q psy11009 859 PWEGA 863 (863)
Q Consensus 859 P~~ID 863 (863)
|.++|
T Consensus 495 pgdlD 499 (630)
T KOG0742|consen 495 PGDLD 499 (630)
T ss_pred ccchh
Confidence 99987
No 90
>PF01434 Peptidase_M41: Peptidase family M41 This is family M41 in the peptidase classification. ; InterPro: IPR000642 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M41 (FtsH endopeptidase family, clan MA(E)). The predicted active site residues for members of this family and thermolysin, the type example for clan MA, occur in the motif HEXXH. The peptidase M41 family belong to a larger family of zinc metalloproteases. This family includes the cell division protein FtsH, and the yeast mitochondrial respiratory chain complexes assembly protein, which is a putative ATP-dependent protease required for assembly of the mitochondrial respiratory chain and ATPase complexes. FtsH is an integral membrane protein, which seems to act as an ATP-dependent zinc metallopeptidase that binds one zinc ion.; GO: 0004222 metalloendopeptidase activity, 0005524 ATP binding, 0006508 proteolysis; PDB: 4EIW_C 2DHR_E 1IY1_A 1IY2_A 1IY0_A 1IXZ_A 2CE7_F 2CEA_F 3KDS_E 2QZ4_A ....
Probab=99.48 E-value=8.3e-15 Score=153.22 Aligned_cols=177 Identities=14% Similarity=0.175 Sum_probs=121.0
Q ss_pred CHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccc-----cccC-Cccccc-----cccccccc
Q psy11009 309 SQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVT-----LATG-PVGLIS-----RDNLKHKS 377 (863)
Q Consensus 309 t~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~-----ll~G-p~g~~~-----~~~~~~~~ 377 (863)
|++||.+|++++.-+...........+++.+|+||+|||||++++...+.. ...| ..|.+. +.+..++.
T Consensus 1 ~~~d~~~a~drv~~G~~~~~~~~~~~~~~~~A~HEAGhAvva~~l~~~~~v~~vsi~prg~~~G~~~~~~~~~~~~~t~~ 80 (213)
T PF01434_consen 1 TMEDIEEAIDRVLMGPEKKSRKLSEEEKRRIAYHEAGHAVVAYLLPPADPVSKVSIVPRGSALGFTQFTPDEDRYIRTRS 80 (213)
T ss_dssp -HHHHHHHHHHHHCCSCCTTS---HHHHHHHHHHHHHHHHHHHHSSS---EEEEESSTTCCCCHCCEECHHTT-SS-BHH
T ss_pred CHHHHHHHHHHHhcCcCcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccccEEEEEEecCCCcceeEEeccchhcccccHH
Confidence 689999999999998877666667888999999999999999999753321 2222 224444 34578999
Q ss_pred hHHHHHHHhhhhhhhhhhccC------CcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchhHHHHH------
Q psy11009 378 PIKMNFLSLVLPLLAEEHGNN------GISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIA------ 445 (863)
Q Consensus 378 ~~~~~~~~~~~~~~~~~~~~~------~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~l~~i~------ 445 (863)
.+.+++..+++|++|||++++ |+++||+++|.| |+.|++.|||++.++.+.
T Consensus 81 ~l~~~i~v~LaGraAEe~~~g~~~~stGa~~DL~~At~i-----------------A~~mv~~~Gm~~~~g~~~~~~~~~ 143 (213)
T PF01434_consen 81 YLEDRICVLLAGRAAEELFFGEDNVSTGASSDLQQATEI-----------------ARKMVASYGMGDSLGLLSYSPNDD 143 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCS-BGGGHHHHHHHHHH-----------------HHHHHHTST-TTTTTSS-SEEEE-
T ss_pred HHHhhHHHHHHHHHHHHhhcCcceecccchhHHHHHHHH-----------------HHHHHHHhCCCCCCceeeeecccc
Confidence 999999999999999999887 999999999999 999999999998777765
Q ss_pred HHHHHHHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy11009 446 ESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIR 513 (863)
Q Consensus 446 e~~~laRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~tl~ 513 (863)
.+.++++++....+|++... ..+-.++++.+..- .+.++.-|.+--+.+..|...|-
T Consensus 144 ~~~~~~~~~~~~~~~s~~~~--~~i~~ev~~lL~~a---------~~~a~~iL~~~r~~l~~la~~Ll 200 (213)
T PF01434_consen 144 DEVFLGREWNSRRPMSEETR--ALIDREVRKLLEEA---------YARAKEILEENREALEALAEALL 200 (213)
T ss_dssp S-SSS-E---EEESS-HHHH--HHHHHHHHHHHHHH---------HHHHHHHHHHTHHHHHHHHHHHH
T ss_pred ccccccccccccCCcchhhH--HHHHHHHHHHHHHH---------HHHHHHHHHHhHHHHHHHHHHHH
Confidence 23566777766667776653 23334444444332 33356666666666666655553
No 91
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.41 E-value=5.5e-13 Score=147.27 Aligned_cols=125 Identities=25% Similarity=0.373 Sum_probs=92.1
Q ss_pred hhhhcCCCCccccccchHHHHH---HHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKR---LLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~---~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.+..+.+|.++++++|++.+.. -|.+.| +. ....+++||||||||||++|++||...+..|..++
T Consensus 13 PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v----------~~--~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~s 80 (436)
T COG2256 13 PLAERLRPKSLDEVVGQEHLLGEGKPLRRAV----------EA--GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALS 80 (436)
T ss_pred ChHHHhCCCCHHHhcChHhhhCCCchHHHHH----------hc--CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEec
Confidence 4567888999999999998752 333333 11 22348999999999999999999999999999999
Q ss_pred cccccccccchhHHHHHHHHHHHHhCC----CeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCce
Q psy11009 775 SSTLTSKYRGESEKLVRLLFEMARFYA----PSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVV 850 (863)
Q Consensus 775 ~s~l~~~~~Ge~e~~ir~lf~~A~~~~----p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~V 850 (863)
+..- ..+.++.+++.|+... ..|||||||+.+-.. -+..||-.| +.+..+
T Consensus 81 Av~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~------------QQD~lLp~v-------E~G~ii 134 (436)
T COG2256 81 AVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKA------------QQDALLPHV-------ENGTII 134 (436)
T ss_pred cccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChh------------hhhhhhhhh-------cCCeEE
Confidence 8653 4567789999886433 589999999988442 234456665 234456
Q ss_pred EEEEecCCCC
Q psy11009 851 MVLAATNFPW 860 (863)
Q Consensus 851 vVIaTTN~P~ 860 (863)
+|-+||..|.
T Consensus 135 lIGATTENPs 144 (436)
T COG2256 135 LIGATTENPS 144 (436)
T ss_pred EEeccCCCCC
Confidence 6667777764
No 92
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.38 E-value=2.5e-12 Score=156.97 Aligned_cols=146 Identities=22% Similarity=0.337 Sum_probs=112.8
Q ss_pred HHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----
Q psy11009 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---- 766 (863)
Q Consensus 691 ~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---- 766 (863)
..+.....+.++.++.++++++|.++..+.+.+.+. ++...++||+||||||||++|+++|..+
T Consensus 164 ~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~ 231 (731)
T TIGR02639 164 ALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLC------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGK 231 (731)
T ss_pred HHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 455566677888889999999999999988877552 2234589999999999999999999987
Q ss_pred ------CCcEEEEeccccc--ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh
Q psy11009 767 ------GTTFFNVCSSTLT--SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 767 ------~~~~i~vs~s~l~--~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD 838 (863)
+..++.++.+.+. .+|.|+.+..++.+|+.+....++||||||||.+++.+...+.. ..+.+.|+..|.
T Consensus 232 ~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~---~~~~~~L~~~l~ 308 (731)
T TIGR02639 232 VPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGS---MDASNLLKPALS 308 (731)
T ss_pred CchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCcc---HHHHHHHHHHHh
Confidence 7789999988887 57899999999999999887789999999999998765322211 123333444442
Q ss_pred cCCCCCCCCCceEEEEecCCC
Q psy11009 839 GLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 839 ~l~~~~~~~~~VvVIaTTN~P 859 (863)
.+.+.+|+|||.+
T Consensus 309 --------~g~i~~IgaTt~~ 321 (731)
T TIGR02639 309 --------SGKLRCIGSTTYE 321 (731)
T ss_pred --------CCCeEEEEecCHH
Confidence 2347888998863
No 93
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.37 E-value=2.7e-12 Score=146.43 Aligned_cols=148 Identities=24% Similarity=0.356 Sum_probs=100.3
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhh----hccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc-cccch
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFF----KGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRGE 785 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~----~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~-~~~Ge 785 (863)
|+|++.+++.+..++..+...-... .....+..++||+||||||||++|+++|..++.+|+.++++.+.. .|+|+
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 8999999999987774332221110 012235579999999999999999999999999999999988763 67776
Q ss_pred hHH-HHHHHHHHH----HhCCCeEEEEcCCCcccccCCCCc-hhhH-HHHHHHHHHHHHhcCC----C---CCCCCCceE
Q psy11009 786 SEK-LVRLLFEMA----RFYAPSTIFIDEIDSLCSRRGSES-EHEA-SRRVKSELLVQMDGLS----S---AEDSSKVVM 851 (863)
Q Consensus 786 ~e~-~ir~lf~~A----~~~~p~ILfIDEID~l~~~R~~~~-~~e~-~~rv~~~LL~~lD~l~----~---~~~~~~~Vv 851 (863)
... .+..++..+ ....++||||||||.+..++.+.+ ..+. ...+++.||+.||+-. + ...+....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 533 344444322 234689999999999987642211 1111 2358899999998632 1 111223467
Q ss_pred EEEecCC
Q psy11009 852 VLAATNF 858 (863)
Q Consensus 852 VIaTTN~ 858 (863)
+|+|+|-
T Consensus 233 ~i~t~ni 239 (412)
T PRK05342 233 QVDTTNI 239 (412)
T ss_pred EeccCCc
Confidence 7777775
No 94
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.35 E-value=3e-12 Score=157.08 Aligned_cols=140 Identities=24% Similarity=0.259 Sum_probs=99.4
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc---------
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT--------- 779 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~--------- 779 (863)
+++.|++++++.|.+++..+.... ......+||+||||||||++|+++|+.++.+++.++...+.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~ 393 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHR 393 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCC
Confidence 348999999999999875332111 11224799999999999999999999999999999765432
Q ss_pred ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc-----CC----CCCCCCCce
Q psy11009 780 SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG-----LS----SAEDSSKVV 850 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~-----l~----~~~~~~~~V 850 (863)
..|.|.....+...|..+....| ||||||||.+.+...+. ..+.||..||. +. ...-...++
T Consensus 394 ~~~~g~~~g~i~~~l~~~~~~~~-villDEidk~~~~~~~~--------~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 394 RTYVGAMPGRIIQGLKKAKTKNP-LFLLDEIDKIGSSFRGD--------PASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CceeCCCCchHHHHHHHhCcCCC-EEEEechhhcCCccCCC--------HHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 25677777777778877765555 89999999998642211 23556666652 11 111122468
Q ss_pred EEEEecCCCCCCC
Q psy11009 851 MVLAATNFPWEGA 863 (863)
Q Consensus 851 vVIaTTN~P~~ID 863 (863)
++|+|||.++.||
T Consensus 465 ~~I~TtN~~~~i~ 477 (775)
T TIGR00763 465 IFIATANSIDTIP 477 (775)
T ss_pred EEEEecCCchhCC
Confidence 9999999998775
No 95
>PRK04195 replication factor C large subunit; Provisional
Probab=99.35 E-value=4.4e-12 Score=147.95 Aligned_cols=135 Identities=24% Similarity=0.329 Sum_probs=97.1
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~ 777 (863)
.|++||+|.++++|+|++.+++.+..++.. +. .+.+.+++||+||||||||++|+++|++++..++++++++
T Consensus 3 ~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~-------~~-~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd 74 (482)
T PRK04195 3 PWVEKYRPKTLSDVVGNEKAKEQLREWIES-------WL-KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASD 74 (482)
T ss_pred CchhhcCCCCHHHhcCCHHHHHHHHHHHHH-------Hh-cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccc
Confidence 599999999999999999999999998841 11 2345689999999999999999999999999999999987
Q ss_pred ccccccchhHHHHHHHHHHHHh------CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceE
Q psy11009 778 LTSKYRGESEKLVRLLFEMARF------YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVM 851 (863)
Q Consensus 778 l~~~~~Ge~e~~ir~lf~~A~~------~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~Vv 851 (863)
.... ..++.+...+.. ..+.||||||+|.+..+. .+..+..|+..++.. ...
T Consensus 75 ~r~~------~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~--------d~~~~~aL~~~l~~~--------~~~ 132 (482)
T PRK04195 75 QRTA------DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE--------DRGGARAILELIKKA--------KQP 132 (482)
T ss_pred cccH------HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc--------chhHHHHHHHHHHcC--------CCC
Confidence 5422 122222222211 257899999999986521 112345566666421 123
Q ss_pred EEEecCCCCCC
Q psy11009 852 VLAATNFPWEG 862 (863)
Q Consensus 852 VIaTTN~P~~I 862 (863)
||+++|.++.+
T Consensus 133 iIli~n~~~~~ 143 (482)
T PRK04195 133 IILTANDPYDP 143 (482)
T ss_pred EEEeccCcccc
Confidence 56678887764
No 96
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.34 E-value=1.9e-12 Score=158.80 Aligned_cols=142 Identities=15% Similarity=0.013 Sum_probs=102.0
Q ss_pred ceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHH---HHhhhhhHHHHHHHHhhcccce
Q psy11009 77 GNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAIT---LALTVGSSLNLYRSITNRGFYI 153 (863)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~---~~~~vg~se~~~r~i~~~~~~l 153 (863)
..|+| |.||||||++|+++++. +..|..+...|... +.+.. -..|+|....++.+.|.++
T Consensus 349 ~lll~---------GppG~GKT~lAk~iA~~----l~~~~~~i~~~~~~-~~~~i~g~~~~~~g~~~g~i~~~l~~~--- 411 (775)
T TIGR00763 349 ILCLV---------GPPGVGKTSLGKSIAKA----LNRKFVRFSLGGVR-DEAEIRGHRRTYVGAMPGRIIQGLKKA--- 411 (775)
T ss_pred eEEEE---------CCCCCCHHHHHHHHHHH----hcCCeEEEeCCCcc-cHHHHcCCCCceeCCCCchHHHHHHHh---
Confidence 47788 99999999999999994 33343333333221 11111 2468898888888888652
Q ss_pred eeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhc-----cCC-------CCCCeEEEEccCCCCCccHHHh
Q psy11009 154 EDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRL-----LTF-------PSTPVQYSIQKGIPWDIDEALR 221 (863)
Q Consensus 154 ~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~-----~~~-------~~~~VivIaATN~p~~LD~All 221 (863)
....| ||||||||.+....... ..+.||..||. +.. .-.+|++|+|||.++.||+||+
T Consensus 412 -----~~~~~-villDEidk~~~~~~~~----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~ 481 (775)
T TIGR00763 412 -----KTKNP-LFLLDEIDKIGSSFRGD----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLL 481 (775)
T ss_pred -----CcCCC-EEEEechhhcCCccCCC----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHh
Confidence 23334 88999999998643222 34566666652 111 1137999999999999999999
Q ss_pred hccceEEEecCCCHHHHHHHHHHHh
Q psy11009 222 RRLEKRIYIPLPSKAGREALLKINL 246 (863)
Q Consensus 222 RRFD~~I~i~lPd~~~R~~IL~~~l 246 (863)
+||+ .|+|+.|+.+++.+|++.|+
T Consensus 482 ~R~~-vi~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 482 DRME-VIELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred CCee-EEecCCCCHHHHHHHHHHHH
Confidence 9996 78999999999999999987
No 97
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.33 E-value=5.4e-12 Score=145.01 Aligned_cols=131 Identities=18% Similarity=0.200 Sum_probs=93.5
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..|.+||+|.+|+|++|++.+.+.|..++. .++.+..+||+||||||||++|+++|+.+++.
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~-----------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~p 74 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALK-----------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEP 74 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccc
Confidence 357899999999999999999999988773 12223468999999999999999999998652
Q ss_pred -----------------EEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 770 -----------------FFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 770 -----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
++++++..- . ....++.+.+.+. .....|+||||+|.+.. .
T Consensus 75 Cg~C~sC~~i~~g~~~dviEIdaas~----~--gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~------------~ 136 (484)
T PRK14956 75 CNECTSCLEITKGISSDVLEIDAASN----R--GIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTD------------Q 136 (484)
T ss_pred cCCCcHHHHHHccCCccceeechhhc----c--cHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCH------------H
Confidence 344443211 1 1223444444333 23457999999998843 3
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.++.||+.|+ ++..++++|.+|+.++.|
T Consensus 137 A~NALLKtLE------EPp~~viFILaTte~~kI 164 (484)
T PRK14956 137 SFNALLKTLE------EPPAHIVFILATTEFHKI 164 (484)
T ss_pred HHHHHHHHhh------cCCCceEEEeecCChhhc
Confidence 6788888884 344568888888888765
No 98
>KOG0743|consensus
Probab=99.33 E-value=2.8e-12 Score=143.89 Aligned_cols=201 Identities=15% Similarity=0.123 Sum_probs=136.2
Q ss_pred cccccccccccceeehhhhhhccceeeeecchhhccccCCccccc-ccceeecceeEeeecccccccCcCCCcccccccc
Q psy11009 25 QSTEHSLAENEEIELSIFSAMVDGFVYIFGNILTFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKS 103 (863)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 103 (863)
.+|-++||-..++--.|..-+ -.|+-. ..-+- .=++-|-|-||| |+||||||.+.-+
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl-----------~~F~k~--k~~YkrvGkawKRGYLLY---------GPPGTGKSS~IaA 254 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDL-----------DDFIKG--KDFYKRVGKAWKRGYLLY---------GPPGTGKSSFIAA 254 (457)
T ss_pred CCCccccccChhHHHHHHHHH-----------HHHHhc--chHHHhcCcchhccceee---------CCCCCCHHHHHHH
Confidence 367777777666655554322 222222 22333 677889999999 9999999999888
Q ss_pred ccc-ccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc--
Q psy11009 104 PIK-MNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL-- 180 (863)
Q Consensus 104 ~~~-~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~-- 180 (863)
+|. +||= +=.| . |+- |+..-. .|.+.- +.+.-+||+|.+||+=+.-|+.
T Consensus 255 mAn~L~yd---IydL-------e------Lt~-v~~n~d-Lr~LL~----------~t~~kSIivIEDIDcs~~l~~~~~ 306 (457)
T KOG0743|consen 255 MANYLNYD---IYDL-------E------LTE-VKLDSD-LRHLLL----------ATPNKSILLIEDIDCSFDLRERRK 306 (457)
T ss_pred HHhhcCCc---eEEe-------e------ecc-ccCcHH-HHHHHH----------hCCCCcEEEEeecccccccccccc
Confidence 887 3331 1111 1 111 333333 777775 4567789999999987654411
Q ss_pred c--------hhHhHHHHHHHHhhccCCCC-CCeEEEEccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccC
Q psy11009 181 R--------GSKTFRTLCIHKYRLLTFPS-TPVQYSIQKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEV 249 (863)
Q Consensus 181 ~--------~~~~v~n~lL~~ld~~~~~~-~~VivIaATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~ 249 (863)
. ...-..+.||..+||+-+.. +.=|||.|||+++.|||||+| |.|.+||++.=+..+-..+++.|+.--
T Consensus 307 ~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~ 386 (457)
T KOG0743|consen 307 KKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIE 386 (457)
T ss_pred cccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCC
Confidence 1 12345688999999998774 234566799999999999999 999999999999999999999999532
Q ss_pred -CCCCcccHHHHhhhCCCCCHHHHHHHH
Q psy11009 250 -KVDPAVDLTHIASQLDGYSGADITNVC 276 (863)
Q Consensus 250 -~l~~dvdl~~LA~~TeG~SGADI~~lv 276 (863)
++.---+++.+...++ +|+||+.+.+
T Consensus 387 ~~h~L~~eie~l~~~~~-~tPA~V~e~l 413 (457)
T KOG0743|consen 387 EDHRLFDEIERLIEETE-VTPAQVAEEL 413 (457)
T ss_pred CCcchhHHHHHHhhcCc-cCHHHHHHHH
Confidence 1221112344444444 7999998643
No 99
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.33 E-value=4.6e-12 Score=142.77 Aligned_cols=87 Identities=29% Similarity=0.411 Sum_probs=67.8
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhcc--CCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc-cccc-hh
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKGI--RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRG-ES 786 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~~--~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~-~~~G-e~ 786 (863)
|+|++++++.+..++........+.... ..+++++||+||||||||++|+++|+.++.+|+.++++.+.. .|.| +.
T Consensus 14 IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dv 93 (441)
T TIGR00390 14 IIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 93 (441)
T ss_pred ccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCH
Confidence 8999999999988775432222221111 234589999999999999999999999999999999998874 7888 56
Q ss_pred HHHHHHHHHHH
Q psy11009 787 EKLVRLLFEMA 797 (863)
Q Consensus 787 e~~ir~lf~~A 797 (863)
+..++.+|+.|
T Consensus 94 E~i~r~l~e~A 104 (441)
T TIGR00390 94 ESMVRDLTDAA 104 (441)
T ss_pred HHHHHHHHHHH
Confidence 77777777665
No 100
>KOG0989|consensus
Probab=99.33 E-value=4.2e-12 Score=136.10 Aligned_cols=133 Identities=24% Similarity=0.274 Sum_probs=95.9
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC------cE
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT------TF 770 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~------~~ 770 (863)
+.|++||+|.++++++|++.+.+.|...+. + +-..++|||||||||||+.|+++|+++.. .+
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~----------~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rv 91 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALL----------R--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRV 91 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHh----------h--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccch
Confidence 459999999999999999999999999884 1 12248999999999999999999999965 34
Q ss_pred EEEecccccccccchhHHHHHHHHHHHHhC---------C-CeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC
Q psy11009 771 FNVCSSTLTSKYRGESEKLVRLLFEMARFY---------A-PSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL 840 (863)
Q Consensus 771 i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~---------~-p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l 840 (863)
.+.++++..+.-++.. + ..-|...... + +.||+|||+|.+.. ..++.|.+.|+..
T Consensus 92 l~lnaSderGisvvr~-K--ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmts------------daq~aLrr~mE~~ 156 (346)
T KOG0989|consen 92 LELNASDERGISVVRE-K--IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTS------------DAQAALRRTMEDF 156 (346)
T ss_pred hhhcccccccccchhh-h--hcCHHHHhhccccccCCCCCcceEEEEechhhhhH------------HHHHHHHHHHhcc
Confidence 5556666554432211 1 1112222111 1 26999999998854 3678888888764
Q ss_pred CCCCCCCCceEEEEecCCCCCC
Q psy11009 841 SSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 841 ~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.+++++|..||+++.|
T Consensus 157 ------s~~trFiLIcnylsri 172 (346)
T KOG0989|consen 157 ------SRTTRFILICNYLSRI 172 (346)
T ss_pred ------ccceEEEEEcCChhhC
Confidence 3457888899988765
No 101
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=5.1e-12 Score=148.57 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=94.4
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC--------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT-------- 768 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~-------- 768 (863)
..+.+||++.+|+||+|++.+++.|.+++. .++....+||+||+|||||++|+++|+.+++
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~-----------~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g 72 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALE-----------QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGG 72 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcccccc
Confidence 457889999999999999999999998773 1233356899999999999999999999865
Q ss_pred ---------------------cEEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchh
Q psy11009 769 ---------------------TFFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEH 823 (863)
Q Consensus 769 ---------------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~ 823 (863)
.++++++..- ..-..++.+.+... .....|+||||+|.|..
T Consensus 73 ~~~~PCG~C~sC~~I~aG~hpDviEIdAas~------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-------- 138 (700)
T PRK12323 73 ITAQPCGQCRACTEIDAGRFVDYIEMDAASN------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-------- 138 (700)
T ss_pred CCCCCCcccHHHHHHHcCCCCcceEeccccc------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------
Confidence 2344443311 11233445554433 23467999999998843
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 824 EASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 824 e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
...+.||+.|+ ++..++++|.+||.|+.|
T Consensus 139 ----~AaNALLKTLE------EPP~~v~FILaTtep~kL 167 (700)
T PRK12323 139 ----HAFNAMLKTLE------EPPEHVKFILATTDPQKI 167 (700)
T ss_pred ----HHHHHHHHhhc------cCCCCceEEEEeCChHhh
Confidence 35678888884 344567888888888765
No 102
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.31 E-value=7.5e-12 Score=148.79 Aligned_cols=131 Identities=19% Similarity=0.218 Sum_probs=94.5
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC--------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT-------- 768 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~-------- 768 (863)
..+.+||++.+|++|+|++.+++.|..++. .++....+||+||+|||||++|+++|+.+++
T Consensus 4 ~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~P 72 (830)
T PRK07003 4 QVLARKWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQP 72 (830)
T ss_pred HhHHHHhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCC
Confidence 347789999999999999999999998773 1233356799999999999999999999864
Q ss_pred ----------------cEEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 769 ----------------TFFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 769 ----------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
.+++++..+- .....++.+.+.+.. ....|+||||+|.|.. .
T Consensus 73 CG~C~sCr~I~~G~h~DviEIDAas~------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~------------~ 134 (830)
T PRK07003 73 CGVCRACREIDEGRFVDYVEMDAASN------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN------------H 134 (830)
T ss_pred CcccHHHHHHhcCCCceEEEeccccc------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH------------H
Confidence 2444443321 112234555554432 3457999999998843 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
..+.||+.|+. ...++.+|.+||.+++|
T Consensus 135 A~NALLKtLEE------PP~~v~FILaTtd~~KI 162 (830)
T PRK07003 135 AFNAMLKTLEE------PPPHVKFILATTDPQKI 162 (830)
T ss_pred HHHHHHHHHHh------cCCCeEEEEEECChhhc
Confidence 46788888853 34467888888888776
No 103
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.30 E-value=1.1e-11 Score=152.93 Aligned_cols=145 Identities=19% Similarity=0.293 Sum_probs=112.0
Q ss_pred HHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----
Q psy11009 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---- 766 (863)
Q Consensus 691 ~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---- 766 (863)
..+.....++++.....++.++|.++..+++.+.+. ++..+++||+||||||||++|+.+|..+
T Consensus 161 ~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~ 228 (821)
T CHL00095 161 TLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRD 228 (821)
T ss_pred HHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCC
Confidence 455566777777778889999999999999998763 2344699999999999999999999987
Q ss_pred ------CCcEEEEeccccc--ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh
Q psy11009 767 ------GTTFFNVCSSTLT--SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 767 ------~~~~i~vs~s~l~--~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD 838 (863)
+.+++.++.+.+. .+|.|+.+.+++.+++.+....++||||||||.+++.++..+..+ +.+-|...+.
T Consensus 229 vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~----~a~lLkp~l~ 304 (821)
T CHL00095 229 VPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAID----AANILKPALA 304 (821)
T ss_pred CChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCccc----HHHHhHHHHh
Confidence 4789999998776 478999999999999999878899999999999987654332221 2222333331
Q ss_pred cCCCCCCCCCceEEEEecCCC
Q psy11009 839 GLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 839 ~l~~~~~~~~~VvVIaTTN~P 859 (863)
.+.+.+|++|+.+
T Consensus 305 --------rg~l~~IgaTt~~ 317 (821)
T CHL00095 305 --------RGELQCIGATTLD 317 (821)
T ss_pred --------CCCcEEEEeCCHH
Confidence 2347788888754
No 104
>PLN03025 replication factor C subunit; Provisional
Probab=99.29 E-value=1.8e-11 Score=135.58 Aligned_cols=129 Identities=26% Similarity=0.235 Sum_probs=87.7
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC-----CcEEE
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG-----TTFFN 772 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~-----~~~i~ 772 (863)
.|++||+|.+|++++|++++++.|..++. ... ..++||+||||||||++|+++|+++. ..+++
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~----------~~~--~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~e 69 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIAR----------DGN--MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLE 69 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHh----------cCC--CceEEEECCCCCCHHHHHHHHHHHHhcccCccceee
Confidence 48999999999999999999999887653 111 23799999999999999999999972 34677
Q ss_pred EecccccccccchhHHHHHHHHH-HHH------hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCC
Q psy11009 773 VCSSTLTSKYRGESEKLVRLLFE-MAR------FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAED 845 (863)
Q Consensus 773 vs~s~l~~~~~Ge~e~~ir~lf~-~A~------~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~ 845 (863)
+++++..+. ..++.... .+. .....||||||+|.+... .++.|+..|+....
T Consensus 70 ln~sd~~~~------~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~------------aq~aL~~~lE~~~~--- 128 (319)
T PLN03025 70 LNASDDRGI------DVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSG------------AQQALRRTMEIYSN--- 128 (319)
T ss_pred ecccccccH------HHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHH------------HHHHHHHHHhcccC---
Confidence 777654221 11222211 111 123679999999998542 34556666754322
Q ss_pred CCCceEEEEecCCCCCC
Q psy11009 846 SSKVVMVLAATNFPWEG 862 (863)
Q Consensus 846 ~~~~VvVIaTTN~P~~I 862 (863)
.+.+|.++|.++.+
T Consensus 129 ---~t~~il~~n~~~~i 142 (319)
T PLN03025 129 ---TTRFALACNTSSKI 142 (319)
T ss_pred ---CceEEEEeCCcccc
Confidence 24466677776554
No 105
>KOG2028|consensus
Probab=99.29 E-value=2.5e-11 Score=132.02 Aligned_cols=129 Identities=23% Similarity=0.359 Sum_probs=88.2
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc---EEEE
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT---FFNV 773 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~---~i~v 773 (863)
..+.++.++.+++|.+|++.+..+ .-.+. .+.+.... ..++|+||||||||+||+.|+.....+ |+++
T Consensus 126 ~PLaermRPktL~dyvGQ~hlv~q-~gllr------s~ieq~~i--pSmIlWGppG~GKTtlArlia~tsk~~Syrfvel 196 (554)
T KOG2028|consen 126 KPLAERMRPKTLDDYVGQSHLVGQ-DGLLR------SLIEQNRI--PSMILWGPPGTGKTTLARLIASTSKKHSYRFVEL 196 (554)
T ss_pred CChhhhcCcchHHHhcchhhhcCc-chHHH------HHHHcCCC--CceEEecCCCCchHHHHHHHHhhcCCCceEEEEE
Confidence 357788999999999999887544 11110 11122222 389999999999999999999988655 7777
Q ss_pred ecccccccccchhHHHHHHHHHHHHh-----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCC
Q psy11009 774 CSSTLTSKYRGESEKLVRLLFEMARF-----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSK 848 (863)
Q Consensus 774 s~s~l~~~~~Ge~e~~ir~lf~~A~~-----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~ 848 (863)
++..- ....+|.+|+.++. ....|||||||+.+... |-|-+.+..+.+.
T Consensus 197 SAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNks-------------------QQD~fLP~VE~G~ 250 (554)
T KOG2028|consen 197 SATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKS-------------------QQDTFLPHVENGD 250 (554)
T ss_pred ecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhh-------------------hhhcccceeccCc
Confidence 76553 34567888888764 34689999999987432 2233333334455
Q ss_pred ceEEEEecCCCC
Q psy11009 849 VVMVLAATNFPW 860 (863)
Q Consensus 849 ~VvVIaTTN~P~ 860 (863)
.++|-+||..|.
T Consensus 251 I~lIGATTENPS 262 (554)
T KOG2028|consen 251 ITLIGATTENPS 262 (554)
T ss_pred eEEEecccCCCc
Confidence 566667776664
No 106
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.29 E-value=1.6e-11 Score=139.63 Aligned_cols=148 Identities=27% Similarity=0.412 Sum_probs=99.3
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhh------hccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc-cccc
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFF------KGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT-SKYR 783 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~------~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~-~~~~ 783 (863)
++|++++++.+..++..+...-... .+......++||+||||||||++|+++|..++.+|..++++.+. ..|.
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 8999999999988773221111100 00112346899999999999999999999999999999988875 3577
Q ss_pred chh-HHHHHHHHHHH----HhCCCeEEEEcCCCcccccCCCCc-hhhHH-HHHHHHHHHHHhcCCCC-------CCCCCc
Q psy11009 784 GES-EKLVRLLFEMA----RFYAPSTIFIDEIDSLCSRRGSES-EHEAS-RRVKSELLVQMDGLSSA-------EDSSKV 849 (863)
Q Consensus 784 Ge~-e~~ir~lf~~A----~~~~p~ILfIDEID~l~~~R~~~~-~~e~~-~rv~~~LL~~lD~l~~~-------~~~~~~ 849 (863)
|.. +..+..++..+ ....++||||||||.+..++.+.+ ..+++ ..+++.||+.|++.... ..+...
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 764 34444444322 234578999999999987543221 11111 25888999999865321 112355
Q ss_pred eEEEEecCC
Q psy11009 850 VMVLAATNF 858 (863)
Q Consensus 850 VvVIaTTN~ 858 (863)
.++|.|+|-
T Consensus 239 ~i~i~TsNi 247 (413)
T TIGR00382 239 FIQIDTSNI 247 (413)
T ss_pred eEEEEcCCc
Confidence 788999985
No 107
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.3e-11 Score=143.07 Aligned_cols=130 Identities=19% Similarity=0.249 Sum_probs=91.0
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC---------
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT--------- 768 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~--------- 768 (863)
.|.++|+|.+|++++|++.+++.|...+. .++.+.++||+||||||||++|+++|+.++.
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc 71 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPC 71 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCC
Confidence 57789999999999999999998888763 1233457899999999999999999999864
Q ss_pred ---------------cEEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHH
Q psy11009 769 ---------------TFFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRV 829 (863)
Q Consensus 769 ---------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv 829 (863)
.++.++++.- .| -..++.+.+.+.. ....||||||+|.+.. ..
T Consensus 72 ~~c~~c~~i~~g~~~dv~el~aa~~----~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~------------~a 133 (472)
T PRK14962 72 NECRACRSIDEGTFMDVIELDAASN----RG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK------------EA 133 (472)
T ss_pred cccHHHHHHhcCCCCccEEEeCccc----CC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH------------HH
Confidence 3556655321 11 2234555554442 2357999999998842 24
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 830 KSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 830 ~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
++.||..|+.. ...+++|++|+.|..|
T Consensus 134 ~~~LLk~LE~p------~~~vv~Ilattn~~kl 160 (472)
T PRK14962 134 FNALLKTLEEP------PSHVVFVLATTNLEKV 160 (472)
T ss_pred HHHHHHHHHhC------CCcEEEEEEeCChHhh
Confidence 56778877542 2346666666666554
No 108
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.28 E-value=1.9e-11 Score=151.22 Aligned_cols=146 Identities=19% Similarity=0.306 Sum_probs=110.8
Q ss_pred HHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----
Q psy11009 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---- 766 (863)
Q Consensus 691 ~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---- 766 (863)
..+.....++++.++..+++++|.+...+++.+.+. ++...++||+||||||||++|+++|..+
T Consensus 160 ~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 227 (857)
T PRK10865 160 ALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQ------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGE 227 (857)
T ss_pred HHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHh------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCC
Confidence 455666778888889999999999998777777552 2334589999999999999999999998
Q ss_pred ------CCcEEEEeccccc--ccccchhHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHH
Q psy11009 767 ------GTTFFNVCSSTLT--SKYRGESEKLVRLLFEMAR-FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQM 837 (863)
Q Consensus 767 ------~~~~i~vs~s~l~--~~~~Ge~e~~ir~lf~~A~-~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~l 837 (863)
+.+++.++...+. .+|.|+.+..++.+|.... ...++||||||||.|++.+++.+..+. .+.|+..+
T Consensus 228 vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~----~~~lkp~l 303 (857)
T PRK10865 228 VPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDA----GNMLKPAL 303 (857)
T ss_pred CchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhH----HHHhcchh
Confidence 7889999888765 5688999999999998754 457899999999999876544333222 22233333
Q ss_pred hcCCCCCCCCCceEEEEecCCCC
Q psy11009 838 DGLSSAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 838 D~l~~~~~~~~~VvVIaTTN~P~ 860 (863)
..+.+.+|+||+.++
T Consensus 304 --------~~g~l~~IgaTt~~e 318 (857)
T PRK10865 304 --------ARGELHCVGATTLDE 318 (857)
T ss_pred --------hcCCCeEEEcCCCHH
Confidence 123478888888765
No 109
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.6e-11 Score=143.74 Aligned_cols=131 Identities=18% Similarity=0.202 Sum_probs=93.3
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..|.+||+|.+|+||+|++.+++.|..++. .++.+..+||+||||||||++|+++|+.+++.
T Consensus 4 ~~l~~kyRP~~f~divGq~~v~~~L~~~~~-----------~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~p 72 (509)
T PRK14958 4 QVLARKWRPRCFQEVIGQAPVVRALSNALD-----------QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANP 72 (509)
T ss_pred hhHHHHHCCCCHHHhcCCHHHHHHHHHHHH-----------hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCccc
Confidence 357899999999999999999999998873 12233468999999999999999999998652
Q ss_pred -----------------EEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 770 -----------------FFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 770 -----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
+++++++.- ..-..+|.+.+.+.. ....|+||||+|.+.. .
T Consensus 73 Cg~C~~C~~i~~g~~~d~~eidaas~------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~------------~ 134 (509)
T PRK14958 73 CNDCENCREIDEGRFPDLFEVDAASR------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG------------H 134 (509)
T ss_pred CCCCHHHHHHhcCCCceEEEEccccc------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH------------H
Confidence 555554321 112234555554432 2346999999998843 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
..+.||+.|+. +..++.+|.+|+.|+.+
T Consensus 135 a~naLLk~LEe------pp~~~~fIlattd~~kl 162 (509)
T PRK14958 135 SFNALLKTLEE------PPSHVKFILATTDHHKL 162 (509)
T ss_pred HHHHHHHHHhc------cCCCeEEEEEECChHhc
Confidence 46788888853 33456677777777654
No 110
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.27 E-value=2.7e-11 Score=134.59 Aligned_cols=102 Identities=25% Similarity=0.302 Sum_probs=76.6
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 699 ~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
|..+++|.+|++++|+++.++.+..++. .....+.++.++||+||||||||++|+++|++++..+..+++..+
T Consensus 15 ~~~~~rP~~~~~~vG~~~~~~~l~~~l~-------~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~ 87 (328)
T PRK00080 15 IERSLRPKSLDEFIGQEKVKENLKIFIE-------AAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPAL 87 (328)
T ss_pred hhhhcCcCCHHHhcCcHHHHHHHHHHHH-------HHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccc
Confidence 4567889999999999999999988773 222224556799999999999999999999999998887766543
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
.. ...+..++.. ...+++|||||||.+..
T Consensus 88 ~~------~~~l~~~l~~--l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 88 EK------PGDLAAILTN--LEEGDVLFIDEIHRLSP 116 (328)
T ss_pred cC------hHHHHHHHHh--cccCCEEEEecHhhcch
Confidence 21 1222333332 23578999999999843
No 111
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.27 E-value=2.9e-11 Score=133.06 Aligned_cols=135 Identities=23% Similarity=0.150 Sum_probs=91.7
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
-.|++||+|.++++++|++++++.+..++. .+..+..+||+||||+|||++|+++|++++.+++.++++
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 358999999999999999999999998773 133334566699999999999999999999999999987
Q ss_pred cccccccchhHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q psy11009 777 TLTSKYRGESEKLVRLLFEMAR-FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAA 855 (863)
Q Consensus 777 ~l~~~~~Ge~e~~ir~lf~~A~-~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaT 855 (863)
+ .. .......+........ ...+.+|||||+|.+... + ....|...|+... ..+.+|+|
T Consensus 78 ~--~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~-------~----~~~~L~~~le~~~------~~~~~Ilt 137 (316)
T PHA02544 78 D--CR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLA-------D----AQRHLRSFMEAYS------KNCSFIIT 137 (316)
T ss_pred c--cc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCH-------H----HHHHHHHHHHhcC------CCceEEEE
Confidence 6 22 2211111222111111 135789999999987321 1 2233444454432 23567788
Q ss_pred cCCCCCC
Q psy11009 856 TNFPWEG 862 (863)
Q Consensus 856 TN~P~~I 862 (863)
||.+..+
T Consensus 138 ~n~~~~l 144 (316)
T PHA02544 138 ANNKNGI 144 (316)
T ss_pred cCChhhc
Confidence 8887654
No 112
>KOG2004|consensus
Probab=99.26 E-value=2.7e-11 Score=140.86 Aligned_cols=138 Identities=27% Similarity=0.319 Sum_probs=100.3
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc-------
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS------- 780 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~------- 780 (863)
+|.-|++++|++|.+++. +.+-.+ ...+-++|+||||+|||+++++||+.+|..|++++...+.+
T Consensus 411 eDHYgm~dVKeRILEfiA-------V~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIA-------VGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred ccccchHHHHHHHHHHHH-------HHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 568999999999999984 222222 34457899999999999999999999999999998765543
Q ss_pred --cccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh---------cCCCCCCCCCc
Q psy11009 781 --KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD---------GLSSAEDSSKV 849 (863)
Q Consensus 781 --~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD---------~l~~~~~~~~~ 849 (863)
.|+|..+.++-+.........| +++|||||.+.. +-.+ ... +.||..|| .+..-.-.-.+
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NP-liLiDEvDKlG~--g~qG---DPa---sALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENP-LILIDEVDKLGS--GHQG---DPA---SALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCc-eEEeehhhhhCC--CCCC---ChH---HHHHHhcChhhccchhhhccccccchhh
Confidence 5888888887777777765565 899999999973 2111 111 23444333 33322223467
Q ss_pred eEEEEecCCCCCC
Q psy11009 850 VMVLAATNFPWEG 862 (863)
Q Consensus 850 VvVIaTTN~P~~I 862 (863)
|++|||.|..+.|
T Consensus 555 VLFicTAN~idtI 567 (906)
T KOG2004|consen 555 VLFICTANVIDTI 567 (906)
T ss_pred eEEEEeccccccC
Confidence 9999999998876
No 113
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.25 E-value=9.3e-12 Score=140.36 Aligned_cols=87 Identities=32% Similarity=0.455 Sum_probs=67.2
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhccC--CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc-cccc-hh
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKGIR--RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRG-ES 786 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~~~--~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~-~~~G-e~ 786 (863)
|+|++++++.+..++....+...+..... ..++++||+||||||||++|+++|+.++.+|+.++++.+.. .|.| ..
T Consensus 17 IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~ 96 (443)
T PRK05201 17 IIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDV 96 (443)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCH
Confidence 99999999999988843222111111111 23589999999999999999999999999999999998875 6888 55
Q ss_pred HHHHHHHHHHH
Q psy11009 787 EKLVRLLFEMA 797 (863)
Q Consensus 787 e~~ir~lf~~A 797 (863)
+..++.+|+.|
T Consensus 97 e~~ir~L~~~A 107 (443)
T PRK05201 97 ESIIRDLVEIA 107 (443)
T ss_pred HHHHHHHHHHH
Confidence 67777777666
No 114
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=3e-11 Score=142.52 Aligned_cols=130 Identities=21% Similarity=0.233 Sum_probs=92.7
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC---------
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT--------- 768 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~--------- 768 (863)
.+.+||+|.+|++|+|++.+++.|..++. .++....+||+||||||||++|+++|+.+++
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pC 72 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPC 72 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCC
Confidence 46789999999999999999999998773 2334468899999999999999999999865
Q ss_pred ---------------cEEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHHH
Q psy11009 769 ---------------TFFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRRV 829 (863)
Q Consensus 769 ---------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv 829 (863)
.++++++++-. ....+|.+...+. .....|+||||+|.|.. ..
T Consensus 73 g~C~sC~~I~~g~hpDviEIDAAs~~------~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~------------~A 134 (702)
T PRK14960 73 EVCATCKAVNEGRFIDLIEIDAASRT------KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST------------HS 134 (702)
T ss_pred ccCHHHHHHhcCCCCceEEecccccC------CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH------------HH
Confidence 34555543211 1233455554443 23457999999998843 25
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 830 KSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 830 ~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.+.||+.|+. +...+.+|.+|+.++.+
T Consensus 135 ~NALLKtLEE------PP~~v~FILaTtd~~kI 161 (702)
T PRK14960 135 FNALLKTLEE------PPEHVKFLFATTDPQKL 161 (702)
T ss_pred HHHHHHHHhc------CCCCcEEEEEECChHhh
Confidence 6778888854 23446677777776654
No 115
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=3.5e-11 Score=145.53 Aligned_cols=131 Identities=21% Similarity=0.236 Sum_probs=90.8
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..+.+||+|.+|++|+|++.+++.|..++. .++.+..+||+||||||||++|+++|+.+++.
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~-----------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~p 72 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALT-----------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATP 72 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCC
Confidence 357789999999999999999999988773 12233456999999999999999999998653
Q ss_pred -----------------EEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 770 -----------------FFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 770 -----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
++++++.+ .. ....+|.+.+... .....|+||||+|.|. +.
T Consensus 73 Cg~C~sC~~i~~g~~~DviEidAas----~~--kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT------------~e 134 (944)
T PRK14949 73 CGVCSSCVEIAQGRFVDLIEVDAAS----RT--KVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS------------RS 134 (944)
T ss_pred CCCchHHHHHhcCCCceEEEecccc----cc--CHHHHHHHHHHHHhhhhcCCcEEEEEechHhcC------------HH
Confidence 12222211 01 1123444444333 2345799999999883 34
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.++.||+.|+. +..++.+|++|+.+..|
T Consensus 135 AqNALLKtLEE------PP~~vrFILaTTe~~kL 162 (944)
T PRK14949 135 SFNALLKTLEE------PPEHVKFLLATTDPQKL 162 (944)
T ss_pred HHHHHHHHHhc------cCCCeEEEEECCCchhc
Confidence 67889999853 34456677777777654
No 116
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.24 E-value=4.7e-11 Score=127.01 Aligned_cols=100 Identities=25% Similarity=0.317 Sum_probs=77.8
Q ss_pred hcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc
Q psy11009 701 QKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS 780 (863)
Q Consensus 701 ~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~ 780 (863)
...+|..|+|++|++.+|+++.-++. ..+..+...-++||+||||.|||+||..+|+++|..+-..++.-+..
T Consensus 18 ~~lRP~~l~efiGQ~~vk~~L~ifI~-------AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK 90 (332)
T COG2255 18 RSLRPKTLDEFIGQEKVKEQLQIFIK-------AAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK 90 (332)
T ss_pred cccCcccHHHhcChHHHHHHHHHHHH-------HHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC
Confidence 45678999999999999999998873 33444566679999999999999999999999999988888776531
Q ss_pred cccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 781 KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 781 ~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
...+-.++.. ....+|||||||+.+.+
T Consensus 91 ------~gDlaaiLt~--Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 91 ------PGDLAAILTN--LEEGDVLFIDEIHRLSP 117 (332)
T ss_pred ------hhhHHHHHhc--CCcCCeEEEehhhhcCh
Confidence 2222223322 34578999999999965
No 117
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.22 E-value=1.2e-10 Score=129.43 Aligned_cols=174 Identities=12% Similarity=0.015 Sum_probs=116.9
Q ss_pred CcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEE
Q psy11009 91 PVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAV 167 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlF 167 (863)
|.||||||++|+.+++. ++....+|.+.. ...+..++.. -..++|||
T Consensus 58 GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~--------------------~~~l~~~l~~----------l~~~~vl~ 107 (328)
T PRK00080 58 GPPGLGKTTLANIIANEMGVNIRITSGPALEK--------------------PGDLAAILTN----------LEEGDVLF 107 (328)
T ss_pred CCCCccHHHHHHHHHHHhCCCeEEEecccccC--------------------hHHHHHHHHh----------cccCCEEE
Confidence 99999999999999984 222223332210 0112223321 12467999
Q ss_pred EecccccccccccchhHhHHHHHHHHhhccC------C---------CCCCeEEEEccCCCCCccHHHhhccceEEEecC
Q psy11009 168 AKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT------F---------PSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPL 232 (863)
Q Consensus 168 iDEiDal~~~R~~~~~~~v~n~lL~~ld~~~------~---------~~~~VivIaATN~p~~LD~AllRRFD~~I~i~l 232 (863)
|||+|.+.... ...|...|+... . .-.++.+|+|||++..++++++.||...++++.
T Consensus 108 IDEi~~l~~~~--------~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~ 179 (328)
T PRK00080 108 IDEIHRLSPVV--------EEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEF 179 (328)
T ss_pred EecHhhcchHH--------HHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCC
Confidence 99999985321 112333332110 0 002478999999999999999889999999999
Q ss_pred CCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHH
Q psy11009 233 PSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQR 311 (863)
Q Consensus 233 Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~ 311 (863)
|+.+++.+|++.......+. ++-.+..||..+.|.- ..+..+++.+...+..+. ...|+.+
T Consensus 180 ~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~p-R~a~~~l~~~~~~a~~~~-----------------~~~I~~~ 241 (328)
T PRK00080 180 YTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTP-RIANRLLRRVRDFAQVKG-----------------DGVITKE 241 (328)
T ss_pred CCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHcC-----------------CCCCCHH
Confidence 99999999999998765444 2334788999998744 777777776655554432 3368888
Q ss_pred HHHHHHHHh
Q psy11009 312 DFEEALARC 320 (863)
Q Consensus 312 Df~~AL~~v 320 (863)
++..++...
T Consensus 242 ~v~~~l~~~ 250 (328)
T PRK00080 242 IADKALDML 250 (328)
T ss_pred HHHHHHHHh
Confidence 888888665
No 118
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.22 E-value=6.7e-11 Score=129.53 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=84.8
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccccchh
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGES 786 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~Ge~ 786 (863)
+|++++|++++++.|..++. .......++.+++|+||||||||++|+++|++++.++..+.++.....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~-------~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~----- 69 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIE-------AAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP----- 69 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHH-------HHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc-----
Confidence 68999999999999998773 222223345689999999999999999999999988777665433211
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCC-----CC-------CCCCceEEEE
Q psy11009 787 EKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSS-----AE-------DSSKVVMVLA 854 (863)
Q Consensus 787 e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~-----~~-------~~~~~VvVIa 854 (863)
..+...+.. ...+.+||||||+.+... ....|+..|+.... .. .....+.+|+
T Consensus 70 -~~l~~~l~~--~~~~~vl~iDEi~~l~~~------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~ 134 (305)
T TIGR00635 70 -GDLAAILTN--LEEGDVLFIDEIHRLSPA------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVG 134 (305)
T ss_pred -hhHHHHHHh--cccCCEEEEehHhhhCHH------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEE
Confidence 111122221 235789999999988542 12234444432220 00 0112377889
Q ss_pred ecCCCCCCC
Q psy11009 855 ATNFPWEGA 863 (863)
Q Consensus 855 TTN~P~~ID 863 (863)
+||+++.++
T Consensus 135 ~t~~~~~l~ 143 (305)
T TIGR00635 135 ATTRAGMLT 143 (305)
T ss_pred ecCCccccC
Confidence 999987664
No 119
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=5.9e-11 Score=141.36 Aligned_cols=130 Identities=19% Similarity=0.203 Sum_probs=92.2
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc--------
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT-------- 769 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~-------- 769 (863)
.+.+||+|.+|++|+|++.+++.|...+. . ++....+||+||+|||||++|+++|+.+++.
T Consensus 5 ~La~KyRP~~f~divGQe~vv~~L~~~l~----------~-~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pC 73 (647)
T PRK07994 5 VLARKWRPQTFAEVVGQEHVLTALANALD----------L-GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPC 73 (647)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH----------c-CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCC
Confidence 46789999999999999999999988773 1 2233457999999999999999999998652
Q ss_pred ----------------EEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHHH
Q psy11009 770 ----------------FFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRRV 829 (863)
Q Consensus 770 ----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv 829 (863)
++++++..- . .-..+|.+.+.+. .....|+||||+|.|.. ..
T Consensus 74 g~C~~C~~i~~g~~~D~ieidaas~----~--~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~------------~a 135 (647)
T PRK07994 74 GECDNCREIEQGRFVDLIEIDAASR----T--KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR------------HS 135 (647)
T ss_pred CCCHHHHHHHcCCCCCceeeccccc----C--CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH------------HH
Confidence 344443320 1 1123444444433 23457999999998843 36
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 830 KSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 830 ~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
++.||+.|+ ++..++.+|.+|+.|..|
T Consensus 136 ~NALLKtLE------EPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 136 FNALLKTLE------EPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HHHHHHHHH------cCCCCeEEEEecCCcccc
Confidence 788999885 344567777778877765
No 120
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.21 E-value=8e-11 Score=145.36 Aligned_cols=145 Identities=19% Similarity=0.310 Sum_probs=108.4
Q ss_pred HHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----
Q psy11009 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---- 766 (863)
Q Consensus 691 ~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---- 766 (863)
..+.....++++.++.++++++|.++..+++.+.+. ++...++||+||||||||++|+.+|..+
T Consensus 169 ~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~ 236 (852)
T TIGR03345 169 ALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILL------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGD 236 (852)
T ss_pred hHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHh------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCC
Confidence 455566778888899999999999998777766442 2233589999999999999999999986
Q ss_pred ------CCcEEEEeccccc--ccccchhHHHHHHHHHHHHh-CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHH
Q psy11009 767 ------GTTFFNVCSSTLT--SKYRGESEKLVRLLFEMARF-YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQM 837 (863)
Q Consensus 767 ------~~~~i~vs~s~l~--~~~~Ge~e~~ir~lf~~A~~-~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~l 837 (863)
+..++.++.+.+. .++.|+.+..++.+++.+.. ..++|||||||+.+++.++..+..+ +-+.|+-.+
T Consensus 237 v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d----~~n~Lkp~l 312 (852)
T TIGR03345 237 VPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGD----AANLLKPAL 312 (852)
T ss_pred CCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCcccccc----HHHHhhHHh
Confidence 3567888887766 36899999999999998864 4689999999999988664433222 223333333
Q ss_pred hcCCCCCCCCCceEEEEecCCC
Q psy11009 838 DGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 838 D~l~~~~~~~~~VvVIaTTN~P 859 (863)
. .+.+.+|+||+.+
T Consensus 313 ~--------~G~l~~IgaTT~~ 326 (852)
T TIGR03345 313 A--------RGELRTIAATTWA 326 (852)
T ss_pred h--------CCCeEEEEecCHH
Confidence 1 2347788888864
No 121
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=6.4e-11 Score=138.56 Aligned_cols=139 Identities=24% Similarity=0.270 Sum_probs=102.1
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc--------
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-------- 780 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~-------- 780 (863)
.|.-|++++|++|.+++......+ . ....=+||+||||+|||+|+++||+.++..|++++...+.+
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~----~--~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTK----K--LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhc----c--CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 568999999999999985322221 1 22236889999999999999999999999999999866543
Q ss_pred -cccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh---------cCCCCCCCCCce
Q psy11009 781 -KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD---------GLSSAEDSSKVV 850 (863)
Q Consensus 781 -~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD---------~l~~~~~~~~~V 850 (863)
.|+|..+.++-+-...|....| ++++||||.+...-.+.. -+.||..+| .+..-.-.-..|
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NP-v~LLDEIDKm~ss~rGDP--------aSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNP-VFLLDEIDKMGSSFRGDP--------ASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCC-eEEeechhhccCCCCCCh--------HHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 5888888888888888887777 889999999965422211 133444333 333333345679
Q ss_pred EEEEecCCCCCC
Q psy11009 851 MVLAATNFPWEG 862 (863)
Q Consensus 851 vVIaTTN~P~~I 862 (863)
|+|||+|..+.|
T Consensus 468 mFiaTANsl~tI 479 (782)
T COG0466 468 MFIATANSLDTI 479 (782)
T ss_pred EEEeecCccccC
Confidence 999999998765
No 122
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.20 E-value=1.5e-10 Score=126.89 Aligned_cols=132 Identities=11% Similarity=0.031 Sum_probs=94.8
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccC---------------CCCCCeEEEEccCCCCCccHHHhhccce
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT---------------FPSTPVQYSIQKGIPWDIDEALRRRLEK 226 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~---------------~~~~~VivIaATN~p~~LD~AllRRFD~ 226 (863)
.+.||||||++.+.... ...|+..|+... ..-.++++|++||++..|+++++.||..
T Consensus 81 ~~~vl~iDEi~~l~~~~--------~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~ 152 (305)
T TIGR00635 81 EGDVLFIDEIHRLSPAV--------EELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGI 152 (305)
T ss_pred cCCEEEEehHhhhCHHH--------HHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcce
Confidence 46799999999986422 122333332111 1112488999999999999999999999
Q ss_pred EEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccC
Q psy11009 227 RIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELD 305 (863)
Q Consensus 227 ~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~ 305 (863)
.+.++.|+.+++.+|++......... ++-.++.|++.+.|.- ..+..+|..+...+.+.. .
T Consensus 153 ~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~p-R~~~~ll~~~~~~a~~~~-----------------~ 214 (305)
T TIGR00635 153 ILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTP-RIANRLLRRVRDFAQVRG-----------------Q 214 (305)
T ss_pred EEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHHHcC-----------------C
Confidence 99999999999999999988654443 2334678999998854 667778877655544432 2
Q ss_pred CCCCHHHHHHHHHH
Q psy11009 306 LPVSQRDFEEALAR 319 (863)
Q Consensus 306 ~~Vt~~Df~~AL~~ 319 (863)
..|+.+++..++..
T Consensus 215 ~~it~~~v~~~l~~ 228 (305)
T TIGR00635 215 KIINRDIALKALEM 228 (305)
T ss_pred CCcCHHHHHHHHHH
Confidence 35888888888876
No 123
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=9e-11 Score=139.54 Aligned_cols=131 Identities=19% Similarity=0.262 Sum_probs=93.1
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..+.+||++.+|+||+|++.+++.|..++. .++.+.++||+||+|||||++|+++|+.+++.
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~-----------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~p 72 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALD-----------EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEP 72 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCC
Confidence 347789999999999999999999999874 13444689999999999999999999987542
Q ss_pred -----------------EEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 770 -----------------FFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 770 -----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
++++++.. ......++.+++.+.. ....||||||+|.+.. .
T Consensus 73 Cg~C~sCr~i~~g~~~DvlEidaAs------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~------------~ 134 (709)
T PRK08691 73 CGVCQSCTQIDAGRYVDLLEIDAAS------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK------------S 134 (709)
T ss_pred CcccHHHHHHhccCccceEEEeccc------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH------------H
Confidence 22333221 1122345666654432 3457999999987732 3
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.++.||+.|+.. ...+.+|.+|+.++.|
T Consensus 135 A~NALLKtLEEP------p~~v~fILaTtd~~kL 162 (709)
T PRK08691 135 AFNAMLKTLEEP------PEHVKFILATTDPHKV 162 (709)
T ss_pred HHHHHHHHHHhC------CCCcEEEEEeCCcccc
Confidence 567888888642 3346777777877765
No 124
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.19 E-value=9.2e-11 Score=142.61 Aligned_cols=147 Identities=22% Similarity=0.278 Sum_probs=109.5
Q ss_pred HHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----
Q psy11009 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---- 766 (863)
Q Consensus 691 ~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---- 766 (863)
..+.....++++-..-.++.++|.+...+.+.+.+. ++...++||+||||||||++|+++|..+
T Consensus 168 ~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~------------r~~~~n~LLvGppGvGKT~lae~la~~i~~~~ 235 (758)
T PRK11034 168 RMENFTTNLNQLARVGGIDPLIGREKELERAIQVLC------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGD 235 (758)
T ss_pred HHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHh------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 455666777777778889999999999999988663 1223588999999999999999999875
Q ss_pred ------CCcEEEEeccccc--ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh
Q psy11009 767 ------GTTFFNVCSSTLT--SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 767 ------~~~~i~vs~s~l~--~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD 838 (863)
+..++.++...+. .+|.|+.+..++.++..+....++||||||||.|++.++..+.. ..+.+.|...+.
T Consensus 236 vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~---~d~~nlLkp~L~ 312 (758)
T PRK11034 236 VPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ---VDAANLIKPLLS 312 (758)
T ss_pred CCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcH---HHHHHHHHHHHh
Confidence 5566777666655 46889999999999998887889999999999998876432211 122233333331
Q ss_pred cCCCCCCCCCceEEEEecCCCC
Q psy11009 839 GLSSAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 839 ~l~~~~~~~~~VvVIaTTN~P~ 860 (863)
.+.+.||+|||.++
T Consensus 313 --------~g~i~vIgATt~~E 326 (758)
T PRK11034 313 --------SGKIRVIGSTTYQE 326 (758)
T ss_pred --------CCCeEEEecCChHH
Confidence 23488999999764
No 125
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.19 E-value=9.5e-11 Score=134.31 Aligned_cols=97 Identities=26% Similarity=0.349 Sum_probs=75.2
Q ss_pred hhhcCCCCccccccchHHHHHH---HHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEec
Q psy11009 699 MVQKNPNIRWDDIAELTDAKRL---LEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775 (863)
Q Consensus 699 ~~~k~p~~~~~dLiGl~~vk~~---L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~ 775 (863)
|.++++|.++++++|++.+... +..++. .....++||+||||||||++|+++|+.++..|+.+++
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~------------~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIE------------AGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHH------------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 7789999999999999999666 777662 1123489999999999999999999999999999987
Q ss_pred ccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCccc
Q psy11009 776 STLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLC 814 (863)
Q Consensus 776 s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~ 814 (863)
.... ...++.+++.+. .....||||||||.+.
T Consensus 70 ~~~~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~ 105 (413)
T PRK13342 70 VTSG-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFN 105 (413)
T ss_pred cccc-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhC
Confidence 6431 223444554442 2357899999999874
No 126
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.18 E-value=1.1e-10 Score=135.41 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=92.7
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC-----------
Q psy11009 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG----------- 767 (863)
Q Consensus 699 ~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~----------- 767 (863)
+..||+|.+|+||+|++.+++.|..++. .++.+.++||+||||+|||++|+++|+.++
T Consensus 3 la~KyRP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hhHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 5689999999999999999999987663 234456899999999999999999998763
Q ss_pred -------------CcEEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHH
Q psy11009 768 -------------TTFFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVK 830 (863)
Q Consensus 768 -------------~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~ 830 (863)
..++++++++-. .-..++.+.+.+.. ....|+||||+|.+.. ..+
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~~------~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~------------~A~ 133 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASNT------SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN------------SAF 133 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccCC------CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH------------HHH
Confidence 245666654321 22345666665542 2356999999988843 256
Q ss_pred HHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 831 SELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 831 ~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
+.||+.|+. +..++.+|.+|+.+..|
T Consensus 134 NaLLK~LEe------Pp~~v~fIlatte~~Kl 159 (491)
T PRK14964 134 NALLKTLEE------PAPHVKFILATTEVKKI 159 (491)
T ss_pred HHHHHHHhC------CCCCeEEEEEeCChHHH
Confidence 788888854 33456677777766543
No 127
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=1.1e-10 Score=136.05 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=93.0
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..|.++|+|.+|+|++|++.+.+.|...+. .++.+.++||+||||||||++|+++|+.+++.
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~ 77 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENT 77 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCc
Confidence 468899999999999999999999988662 12344689999999999999999999998652
Q ss_pred ---------------------EEEEecccccccccchhHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCchhh
Q psy11009 770 ---------------------FFNVCSSTLTSKYRGESEKLVRLLFEMARFY----APSTIFIDEIDSLCSRRGSESEHE 824 (863)
Q Consensus 770 ---------------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~----~p~ILfIDEID~l~~~R~~~~~~e 824 (863)
++++++.. ......++.+.+.+... ...|+||||+|.+..
T Consensus 78 ~~~~C~~C~~C~~i~~~~h~Dv~eidaas------~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------- 142 (507)
T PRK06645 78 TIKTCEQCTNCISFNNHNHPDIIEIDAAS------KTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------- 142 (507)
T ss_pred CcCCCCCChHHHHHhcCCCCcEEEeeccC------CCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH---------
Confidence 22222211 11234456666666532 356999999998832
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 825 ASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 825 ~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
..++.||+.|+. +...+++|.+|+.+..|
T Consensus 143 ---~a~naLLk~LEe------pp~~~vfI~aTte~~kI 171 (507)
T PRK06645 143 ---GAFNALLKTLEE------PPPHIIFIFATTEVQKI 171 (507)
T ss_pred ---HHHHHHHHHHhh------cCCCEEEEEEeCChHHh
Confidence 346778888753 33456777777776654
No 128
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.2e-10 Score=131.21 Aligned_cols=131 Identities=16% Similarity=0.200 Sum_probs=88.7
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..+.+||+|.+|++|+|++.+++.+...+. .++.+..+||+||||||||++|+++|+.+++.
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~-----------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~p 72 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLS-----------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNP 72 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHH-----------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 347889999999999999999999988773 12333568999999999999999999998632
Q ss_pred -----------------EEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 770 -----------------FFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 770 -----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
++.++++.- .....++.+.+.... ....|+||||+|.+.. .
T Consensus 73 c~~c~~c~~~~~~~~~d~~~~~~~~~------~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~------------~ 134 (363)
T PRK14961 73 CRKCIICKEIEKGLCLDLIEIDAASR------TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR------------H 134 (363)
T ss_pred CCCCHHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH------------H
Confidence 222322110 112334555554432 2346999999998832 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.++.||+.|+. +...+.+|.+|+.+..+
T Consensus 135 a~naLLk~lEe------~~~~~~fIl~t~~~~~l 162 (363)
T PRK14961 135 SFNALLKTLEE------PPQHIKFILATTDVEKI 162 (363)
T ss_pred HHHHHHHHHhc------CCCCeEEEEEcCChHhh
Confidence 45678888754 23346666677766544
No 129
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=1.3e-10 Score=136.69 Aligned_cols=131 Identities=21% Similarity=0.271 Sum_probs=91.9
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..+.+||+|.+|++|+|++.+++.|..++. .++.+..+||+||||||||++|+++|+.+++.
T Consensus 4 ~~l~~k~rP~~f~divGq~~v~~~L~~~i~-----------~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~p 72 (527)
T PRK14969 4 QVLARKWRPKSFSELVGQEHVVRALTNALE-----------QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATP 72 (527)
T ss_pred HHHHHHhCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 347789999999999999999999998773 12333568999999999999999999998652
Q ss_pred -----------------EEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 770 -----------------FFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 770 -----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
+++++++. ......++.+.+.+.. ....|+||||+|.+.. .
T Consensus 73 cg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~------------~ 134 (527)
T PRK14969 73 CGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK------------S 134 (527)
T ss_pred CCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH------------H
Confidence 23333221 0112345666665542 2346999999998843 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
..+.||+.|+. +...+++|.+|+.|+.+
T Consensus 135 a~naLLK~LEe------pp~~~~fIL~t~d~~ki 162 (527)
T PRK14969 135 AFNAMLKTLEE------PPEHVKFILATTDPQKI 162 (527)
T ss_pred HHHHHHHHHhC------CCCCEEEEEEeCChhhC
Confidence 46788888854 33456677777777654
No 130
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.17 E-value=1.4e-10 Score=143.92 Aligned_cols=145 Identities=21% Similarity=0.337 Sum_probs=108.4
Q ss_pred HHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----
Q psy11009 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---- 766 (863)
Q Consensus 691 ~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---- 766 (863)
..+.....+.++.++..++.++|.+...+++.+.+. ++...+++|+||||||||++++++|..+
T Consensus 155 ~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~ 222 (852)
T TIGR03346 155 ALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLS------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGD 222 (852)
T ss_pred HHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccC
Confidence 455566778888899999999999998777777552 2334689999999999999999999986
Q ss_pred ------CCcEEEEeccccc--ccccchhHHHHHHHHHHHHh-CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHH
Q psy11009 767 ------GTTFFNVCSSTLT--SKYRGESEKLVRLLFEMARF-YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQM 837 (863)
Q Consensus 767 ------~~~~i~vs~s~l~--~~~~Ge~e~~ir~lf~~A~~-~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~l 837 (863)
+.+++.++...+. .+|.|+.+..++.++..+.. ..++||||||||.|++.++..+.. .+.+.|...+
T Consensus 223 ~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~----d~~~~Lk~~l 298 (852)
T TIGR03346 223 VPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAM----DAGNMLKPAL 298 (852)
T ss_pred CchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchh----HHHHHhchhh
Confidence 6788888887765 56889999999999998765 358999999999998754332221 2223333222
Q ss_pred hcCCCCCCCCCceEEEEecCCC
Q psy11009 838 DGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 838 D~l~~~~~~~~~VvVIaTTN~P 859 (863)
..+.+.+|++|+.+
T Consensus 299 --------~~g~i~~IgaTt~~ 312 (852)
T TIGR03346 299 --------ARGELHCIGATTLD 312 (852)
T ss_pred --------hcCceEEEEeCcHH
Confidence 12347788888865
No 131
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=1.2e-10 Score=142.60 Aligned_cols=130 Identities=18% Similarity=0.145 Sum_probs=89.9
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc--------
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT-------- 769 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~-------- 769 (863)
.|.+||++.+|++|+|++.+++.|..++. .++....+||+||+|||||++|+++|+.+++.
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~-----------~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pC 72 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPC 72 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCC
Confidence 36799999999999999999999998773 12333468999999999999999999998642
Q ss_pred ------------------EEEEecccccccccchhHHHHHHHHHHH----HhCCCeEEEEcCCCcccccCCCCchhhHHH
Q psy11009 770 ------------------FFNVCSSTLTSKYRGESEKLVRLLFEMA----RFYAPSTIFIDEIDSLCSRRGSESEHEASR 827 (863)
Q Consensus 770 ------------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A----~~~~p~ILfIDEID~l~~~R~~~~~~e~~~ 827 (863)
|++++.... . .-..+|.+.+.+ ......|+||||+|.|..
T Consensus 73 g~C~sC~~~~~g~~~~~dv~eidaas~----~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~------------ 134 (824)
T PRK07764 73 GECDSCVALAPGGPGSLDVTEIDAASH----G--GVDDARELRERAFFAPAESRYKIFIIDEAHMVTP------------ 134 (824)
T ss_pred cccHHHHHHHcCCCCCCcEEEeccccc----C--CHHHHHHHHHHHHhchhcCCceEEEEechhhcCH------------
Confidence 333333211 0 112233333222 234567999999999843
Q ss_pred HHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 828 RVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 828 rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
...+.||+.|+.. ..++++|++|+.+++|
T Consensus 135 ~a~NaLLK~LEEp------P~~~~fIl~tt~~~kL 163 (824)
T PRK07764 135 QGFNALLKIVEEP------PEHLKFIFATTEPDKV 163 (824)
T ss_pred HHHHHHHHHHhCC------CCCeEEEEEeCChhhh
Confidence 3567888888543 3456777777777653
No 132
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.17 E-value=1.9e-10 Score=127.14 Aligned_cols=70 Identities=26% Similarity=0.296 Sum_probs=58.3
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC-----CcEEE
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG-----TTFFN 772 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~-----~~~i~ 772 (863)
.|.++|+|.+|++++|.+++++.+..++. . + ...++||+||||||||++|+++|+++. .++++
T Consensus 4 ~w~~ky~P~~~~~~~g~~~~~~~L~~~~~----------~-~-~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~ 71 (337)
T PRK12402 4 LWTEKYRPALLEDILGQDEVVERLSRAVD----------S-P-NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTE 71 (337)
T ss_pred chHHhhCCCcHHHhcCCHHHHHHHHHHHh----------C-C-CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEE
Confidence 59999999999999999999999998773 1 1 123799999999999999999999983 35678
Q ss_pred Eeccccc
Q psy11009 773 VCSSTLT 779 (863)
Q Consensus 773 vs~s~l~ 779 (863)
++++++.
T Consensus 72 i~~~~~~ 78 (337)
T PRK12402 72 FNVADFF 78 (337)
T ss_pred echhhhh
Confidence 8877653
No 133
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.4e-10 Score=137.13 Aligned_cols=131 Identities=21% Similarity=0.203 Sum_probs=90.2
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..|.+||++.+|+||+|++.+++.|..++. . ++-...+||+||||||||++|+++|+.+.+.
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~----------~-~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~p 72 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQ----------E-NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEP 72 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHH----------c-CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCC
Confidence 358899999999999999999999998773 1 2223589999999999999999999998653
Q ss_pred -----------------EEEEecccccccccchhHHHHHHHHHHH----HhCCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 770 -----------------FFNVCSSTLTSKYRGESEKLVRLLFEMA----RFYAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 770 -----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A----~~~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
++++++..- .+ -..++.+.+.. ......||||||+|.+.. .
T Consensus 73 Cg~C~sC~~i~~g~hpDv~eId~a~~----~~--Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~------------~ 134 (624)
T PRK14959 73 CNTCEQCRKVTQGMHVDVVEIDGASN----RG--IDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR------------E 134 (624)
T ss_pred CcccHHHHHHhcCCCCceEEEecccc----cC--HHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH------------H
Confidence 444443211 11 11223332222 223467999999998843 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.++.||+.|+.. ...+++|++||.+..|
T Consensus 135 a~naLLk~LEEP------~~~~ifILaTt~~~kl 162 (624)
T PRK14959 135 AFNALLKTLEEP------PARVTFVLATTEPHKF 162 (624)
T ss_pred HHHHHHHHhhcc------CCCEEEEEecCChhhh
Confidence 468888888542 2346677777776543
No 134
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.2e-10 Score=138.49 Aligned_cols=131 Identities=18% Similarity=0.244 Sum_probs=91.9
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC--------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT-------- 768 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~-------- 768 (863)
..|.+||++.+|++|+|++.+++.|..++. .++.+..+||+||+|||||++|+++|+.+++
T Consensus 4 ~vla~KyRP~~f~dviGQe~vv~~L~~~l~-----------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~ 72 (618)
T PRK14951 4 LVLARKYRPRSFSEMVGQEHVVQALTNALT-----------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGG 72 (618)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccC
Confidence 457899999999999999999999998773 1223346799999999999999999999864
Q ss_pred ---------------------cEEEEecccccccccchhHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCchh
Q psy11009 769 ---------------------TFFNVCSSTLTSKYRGESEKLVRLLFEMARFY----APSTIFIDEIDSLCSRRGSESEH 823 (863)
Q Consensus 769 ---------------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~----~p~ILfIDEID~l~~~R~~~~~~ 823 (863)
.++++++..- ..-..++.+.+.+... ...|+||||+|.|..
T Consensus 73 ~~~~pCg~C~~C~~i~~g~h~D~~eldaas~------~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~-------- 138 (618)
T PRK14951 73 ITATPCGVCQACRDIDSGRFVDYTELDAASN------RGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN-------- 138 (618)
T ss_pred CCCCCCCccHHHHHHHcCCCCceeecCcccc------cCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------
Confidence 2334433221 1122455666554422 246999999998843
Q ss_pred hHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 824 EASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 824 e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
...+.||+.|+. +..++.+|.+|+.|+.|
T Consensus 139 ----~a~NaLLKtLEE------PP~~~~fIL~Ttd~~ki 167 (618)
T PRK14951 139 ----TAFNAMLKTLEE------PPEYLKFVLATTDPQKV 167 (618)
T ss_pred ----HHHHHHHHhccc------CCCCeEEEEEECCchhh
Confidence 246778877743 34556677777777654
No 135
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=2e-10 Score=135.92 Aligned_cols=129 Identities=18% Similarity=0.165 Sum_probs=89.5
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc---------
Q psy11009 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT--------- 769 (863)
Q Consensus 699 ~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~--------- 769 (863)
|.+||+|.+|++|+|++.+++.|..++. .++.+..+||+||+|||||++|+++|+.+++.
T Consensus 3 l~~kyRP~~f~eivGq~~i~~~L~~~i~-----------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 71 (584)
T PRK14952 3 LYRKYRPATFAEVVGQEHVTEPLSSALD-----------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCG 71 (584)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCccc
Confidence 5689999999999999999999999873 12333457999999999999999999987632
Q ss_pred -----------------EEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 770 -----------------FFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 770 -----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
+++++++... .-..++.+.+.+. .....|+||||+|.+.. .
T Consensus 72 ~C~~C~~i~~~~~~~~dvieidaas~~------gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~------------~ 133 (584)
T PRK14952 72 VCESCVALAPNGPGSIDVVELDAASHG------GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT------------A 133 (584)
T ss_pred ccHHHHHhhcccCCCceEEEecccccc------CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH------------H
Confidence 3333332210 1222344433332 23456999999998843 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.++.||+.|+. ...++++|.+|+.|..|
T Consensus 134 A~NALLK~LEE------pp~~~~fIL~tte~~kl 161 (584)
T PRK14952 134 GFNALLKIVEE------PPEHLIFIFATTEPEKV 161 (584)
T ss_pred HHHHHHHHHhc------CCCCeEEEEEeCChHhh
Confidence 57788888853 34457777777776553
No 136
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.4e-10 Score=134.27 Aligned_cols=130 Identities=18% Similarity=0.228 Sum_probs=88.3
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC--------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT-------- 768 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~-------- 768 (863)
..|.+||+|.+|++++|++.+++.|...+. .++.+..+||+||||||||++|+++|+.+++
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~-----------~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~p 72 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALE-----------TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEP 72 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC
Confidence 357899999999999999999999988773 1233346899999999999999999998754
Q ss_pred ----------------cEEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 769 ----------------TFFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 769 ----------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
.++++++..- .| -..++.+.+.+. .....|+||||+|.+.. .
T Consensus 73 Cg~C~sC~~i~~~~~~dlieidaas~----~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~------------~ 134 (546)
T PRK14957 73 CNKCENCVAINNNSFIDLIEIDAASR----TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLSK------------Q 134 (546)
T ss_pred CcccHHHHHHhcCCCCceEEeecccc----cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhccH------------H
Confidence 3333433211 11 112334444333 23467999999988743 3
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ 861 (863)
.++.||+.|+. +...+.+|++|+.+..
T Consensus 135 a~naLLK~LEe------pp~~v~fIL~Ttd~~k 161 (546)
T PRK14957 135 SFNALLKTLEE------PPEYVKFILATTDYHK 161 (546)
T ss_pred HHHHHHHHHhc------CCCCceEEEEECChhh
Confidence 56788888854 2334556656655554
No 137
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.14 E-value=2.4e-10 Score=133.70 Aligned_cols=129 Identities=22% Similarity=0.258 Sum_probs=89.8
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC----------
Q psy11009 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT---------- 768 (863)
Q Consensus 699 ~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~---------- 768 (863)
+.+||+|.+|+||+|++.+++.|..++.. ++.+..+||+||||||||++|+++|+.+.+
T Consensus 4 l~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~ 72 (504)
T PRK14963 4 LYQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGE 72 (504)
T ss_pred HHHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCc
Confidence 45899999999999999999999988741 223345699999999999999999998853
Q ss_pred -------------cEEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHHHHH
Q psy11009 769 -------------TFFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKS 831 (863)
Q Consensus 769 -------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~ 831 (863)
.++++++..- . .-..++.+.+.+. ...+.||||||+|.+. ...++
T Consensus 73 C~sc~~i~~~~h~dv~el~~~~~----~--~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls------------~~a~n 134 (504)
T PRK14963 73 CESCLAVRRGAHPDVLEIDAASN----N--SVEDVRDLREKVLLAPLRGGRKVYILDEAHMMS------------KSAFN 134 (504)
T ss_pred ChhhHHHhcCCCCceEEeccccc----C--CHHHHHHHHHHHhhccccCCCeEEEEECccccC------------HHHHH
Confidence 1444554311 1 1233445444333 2346799999998763 23567
Q ss_pred HHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 832 ELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 832 ~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.|+..|+.. ...+++|.+|+.+..|
T Consensus 135 aLLk~LEep------~~~t~~Il~t~~~~kl 159 (504)
T PRK14963 135 ALLKTLEEP------PEHVIFILATTEPEKM 159 (504)
T ss_pred HHHHHHHhC------CCCEEEEEEcCChhhC
Confidence 788888542 3346677777877765
No 138
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=1.9e-10 Score=135.49 Aligned_cols=131 Identities=19% Similarity=0.235 Sum_probs=91.5
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC--------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT-------- 768 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~-------- 768 (863)
..|.++|+|.+|++++|++.+++.+..++. .++.+..+||+||||||||++|+++|+.+.+
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~ 72 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDC 72 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 468999999999999999999999988763 1233467999999999999999999999743
Q ss_pred ----------------cEEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 769 ----------------TFFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 769 ----------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
.+++++++.. . .-..++.+...+.. ....|++|||+|.+.. .
T Consensus 73 Cg~C~sCr~i~~~~h~DiieIdaas~----i--gVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~------------~ 134 (605)
T PRK05896 73 CNSCSVCESINTNQSVDIVELDAASN----N--GVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST------------S 134 (605)
T ss_pred CcccHHHHHHHcCCCCceEEeccccc----c--CHHHHHHHHHHHHhchhhCCcEEEEEechHhCCH------------H
Confidence 2333433211 1 12234555554432 2346999999998842 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
..+.||..|+. +...+++|++|+.|..|
T Consensus 135 A~NaLLKtLEE------Pp~~tvfIL~Tt~~~KL 162 (605)
T PRK05896 135 AWNALLKTLEE------PPKHVVFIFATTEFQKI 162 (605)
T ss_pred HHHHHHHHHHh------CCCcEEEEEECCChHhh
Confidence 45788888853 33446777777777654
No 139
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.13 E-value=2.3e-10 Score=115.97 Aligned_cols=116 Identities=24% Similarity=0.349 Sum_probs=79.4
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCC----cEEEEecccccccccchhHHHHHHHHHHH----HhCCCeEEEEcCCCc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGT----TFFNVCSSTLTSKYRGESEKLVRLLFEMA----RFYAPSTIFIDEIDS 812 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~----~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A----~~~~p~ILfIDEID~ 812 (863)
|..++||+||+|||||.+|+++|..+.. +++.++++++... ++.+..+..+...+ ......||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 5568999999999999999999999996 9999999998761 11111112222111 111234999999999
Q ss_pred ccccCCCCchhhHHHHHHHHHHHHHhcCCCCCC-----CCCceEEEEecCCC
Q psy11009 813 LCSRRGSESEHEASRRVKSELLVQMDGLSSAED-----SSKVVMVLAATNFP 859 (863)
Q Consensus 813 l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~-----~~~~VvVIaTTN~P 859 (863)
+.++ .+.+.+.....+++.||+.||+-.-... ..+++++|+|+|.-
T Consensus 80 a~~~-~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 80 AHPS-NSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp CSHT-TTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc-ccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 9886 3334455556789999999985332211 23568999999963
No 140
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.13 E-value=5.3e-10 Score=125.31 Aligned_cols=198 Identities=14% Similarity=0.086 Sum_probs=120.1
Q ss_pred CcCCCcccccccccccc------------cchhcccchhhhccCcchhHHHHHHHhh-----hh----hHHHHHHHHhhc
Q psy11009 91 PVVGSGTYLKHKSPIKM------------NFLSLVLPLLAEEHGKLKFKEAITLALT-----VG----SSLNLYRSITNR 149 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~------------~~~~~~~~~l~~~~gk~s~~e~~~~~~~-----vg----~se~~~r~i~~~ 149 (863)
|.||||||.+++.+.+. .++.+..... .+.-.+...+..++. ++ .....++.+++.
T Consensus 47 G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~---~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 123 (365)
T TIGR02928 47 GKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQIL---DTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKE 123 (365)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCC---CCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHH
Confidence 99999999999988763 2222222221 111223333333331 11 112233444432
Q ss_pred ccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC---CccHHHhhccc-
Q psy11009 150 GFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW---DIDEALRRRLE- 225 (863)
Q Consensus 150 ~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~---~LD~AllRRFD- 225 (863)
+ .....|+||+|||+|.+.... ..++.+|+...+....+..+|.+|++||.++ .||+.+.+||.
T Consensus 124 ---l----~~~~~~~vlvIDE~d~L~~~~-----~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~ 191 (365)
T TIGR02928 124 ---L----NERGDSLIIVLDEIDYLVGDD-----DDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCE 191 (365)
T ss_pred ---H----HhcCCeEEEEECchhhhccCC-----cHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCc
Confidence 1 134668999999999997221 2244444433211222234799999999986 58999988996
Q ss_pred eEEEecCCCHHHHHHHHHHHhcc-CC---CCCcccHHHHhhh---CCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhcc
Q psy11009 226 KRIYIPLPSKAGREALLKINLKE-VK---VDPAVDLTHIASQ---LDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQ 298 (863)
Q Consensus 226 ~~I~i~lPd~~~R~~IL~~~l~~-~~---l~~dvdl~~LA~~---TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~ 298 (863)
..|+|++++.++..+|++..+.. .. ++ +.-++.++.. +.|. ...+-.+|+.|+..|..+.
T Consensus 192 ~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~-~~~l~~i~~~~~~~~Gd-~R~al~~l~~a~~~a~~~~----------- 258 (365)
T TIGR02928 192 EEIIFPPYDAEELRDILENRAEKAFYDGVLD-DGVIPLCAALAAQEHGD-ARKAIDLLRVAGEIAEREG----------- 258 (365)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHhhccCCCCC-hhHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHcC-----------
Confidence 78999999999999999998852 11 11 1113334443 3342 3344457778877776654
Q ss_pred CCccccCCCCCHHHHHHHHHHhcC
Q psy11009 299 IPKEELDLPVSQRDFEEALARCNK 322 (863)
Q Consensus 299 ~~~~~~~~~Vt~~Df~~AL~~v~p 322 (863)
...|+.+|+..|+..+..
T Consensus 259 ------~~~it~~~v~~a~~~~~~ 276 (365)
T TIGR02928 259 ------AERVTEDHVEKAQEKIEK 276 (365)
T ss_pred ------CCCCCHHHHHHHHHHHHH
Confidence 347999999999988743
No 141
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=2.3e-10 Score=136.06 Aligned_cols=130 Identities=22% Similarity=0.273 Sum_probs=93.0
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc--------
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT-------- 769 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~-------- 769 (863)
.+.+||+|.+|++|+|++.+++.|..++. .++.+..+||+||+|||||++|+++|+.+++.
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c 73 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAID-----------TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPC 73 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCC
Confidence 46789999999999999999999999873 12344568999999999999999999998542
Q ss_pred ----------------EEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHH
Q psy11009 770 ----------------FFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRV 829 (863)
Q Consensus 770 ----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv 829 (863)
++++++..- .....++.+.+.+.. ....|+||||+|.+.. ..
T Consensus 74 ~~c~~c~~i~~g~~~d~~eid~~s~------~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~------------~a 135 (576)
T PRK14965 74 NVCPPCVEITEGRSVDVFEIDGASN------TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLST------------NA 135 (576)
T ss_pred CccHHHHHHhcCCCCCeeeeeccCc------cCHHHHHHHHHHHHhccccCCceEEEEEChhhCCH------------HH
Confidence 334433221 112345566555542 2346999999998843 25
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 830 KSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 830 ~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.+.||+.|+. +..++++|.+|+.|++|
T Consensus 136 ~naLLk~LEe------pp~~~~fIl~t~~~~kl 162 (576)
T PRK14965 136 FNALLKTLEE------PPPHVKFIFATTEPHKV 162 (576)
T ss_pred HHHHHHHHHc------CCCCeEEEEEeCChhhh
Confidence 6888888853 34457777888887654
No 142
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=3.8e-10 Score=133.75 Aligned_cols=131 Identities=20% Similarity=0.282 Sum_probs=93.6
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC--------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT-------- 768 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~-------- 768 (863)
..|.++|+|.+|++|+|++.+++.|..++.. ++.+..+||+||+|||||++|+++|+.+++
T Consensus 4 ~al~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~p 72 (559)
T PRK05563 4 QALYRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEP 72 (559)
T ss_pred HHHHHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC
Confidence 3577899999999999999999999998731 234457899999999999999999998753
Q ss_pred ----------------cEEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 769 ----------------TFFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 769 ----------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
.+++++++. +.....++.+.+.+.. ....|+||||+|.+.. .
T Consensus 73 C~~C~~C~~i~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~------------~ 134 (559)
T PRK05563 73 CNECEICKAITNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLST------------G 134 (559)
T ss_pred CCccHHHHHHhcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------H
Confidence 344444422 1123345666665542 2356999999998843 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.++.||+.|+. +..++++|.+|+.|..|
T Consensus 135 a~naLLKtLEe------pp~~~ifIlatt~~~ki 162 (559)
T PRK05563 135 AFNALLKTLEE------PPAHVIFILATTEPHKI 162 (559)
T ss_pred HHHHHHHHhcC------CCCCeEEEEEeCChhhC
Confidence 56788887743 33456777777777765
No 143
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.09 E-value=3.7e-10 Score=133.21 Aligned_cols=71 Identities=28% Similarity=0.470 Sum_probs=58.4
Q ss_pred HHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh--------
Q psy11009 695 LERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-------- 766 (863)
Q Consensus 695 ~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-------- 766 (863)
+...|.+++++.+|++++|++...+.+...+. ...+.++||+||||||||++|+++...+
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~ 118 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPF 118 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCc
Confidence 45579999999999999999999999886542 2223589999999999999999998653
Q ss_pred --CCcEEEEeccc
Q psy11009 767 --GTTFFNVCSST 777 (863)
Q Consensus 767 --~~~~i~vs~s~ 777 (863)
+.+|+.+++..
T Consensus 119 ~~~~~fi~id~~~ 131 (531)
T TIGR02902 119 KEGAAFVEIDATT 131 (531)
T ss_pred CCCCCEEEEcccc
Confidence 36899999864
No 144
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=4.9e-10 Score=134.43 Aligned_cols=131 Identities=22% Similarity=0.268 Sum_probs=93.2
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcE------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTF------ 770 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~------ 770 (863)
..|.++|+|.+|++|+|++.+++.|..++. .++.+..+||+||+|||||++|+++|+.+.+.-
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~-----------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~ 74 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIK-----------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLE 74 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCC
Confidence 468899999999999999999999999873 123345789999999999999999999885531
Q ss_pred ---------------EEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHH
Q psy11009 771 ---------------FNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKS 831 (863)
Q Consensus 771 ---------------i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~ 831 (863)
+.+++.. ......++.+.+.+.. ....|+||||+|.+.. ..++
T Consensus 75 pC~~C~~~~~~~~Dvieidaas------n~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~------------~A~N 136 (725)
T PRK07133 75 PCQECIENVNNSLDIIEMDAAS------NNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK------------SAFN 136 (725)
T ss_pred chhHHHHhhcCCCcEEEEeccc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH------------HHHH
Confidence 1111100 0113335666665553 3457999999998843 2577
Q ss_pred HHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 832 ELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 832 ~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.||+.|+. +...+++|.+|+.|+.|
T Consensus 137 ALLKtLEE------PP~~tifILaTte~~KL 161 (725)
T PRK07133 137 ALLKTLEE------PPKHVIFILATTEVHKI 161 (725)
T ss_pred HHHHHhhc------CCCceEEEEEcCChhhh
Confidence 88888853 34457777777777654
No 145
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.06 E-value=8.6e-10 Score=127.68 Aligned_cols=131 Identities=21% Similarity=0.213 Sum_probs=89.0
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..+.++|+|.+|+||+|++.+++.+..++. .++.+..+||+||||+|||++|+++|+.+...
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~-----------~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~ 73 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALR-----------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQE 73 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCC
Confidence 357789999999999999999999998773 12334679999999999999999999987432
Q ss_pred ------------------EEEEecccccccccchhHHHHHHHHHHH----HhCCCeEEEEcCCCcccccCCCCchhhHHH
Q psy11009 770 ------------------FFNVCSSTLTSKYRGESEKLVRLLFEMA----RFYAPSTIFIDEIDSLCSRRGSESEHEASR 827 (863)
Q Consensus 770 ------------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A----~~~~p~ILfIDEID~l~~~R~~~~~~e~~~ 827 (863)
++.+++... .| -..++.+.+.. ......||||||+|.+..
T Consensus 74 ~c~~c~~C~~i~~~~~~d~~~i~g~~~----~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~------------ 135 (451)
T PRK06305 74 PCNQCASCKEISSGTSLDVLEIDGASH----RG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK------------ 135 (451)
T ss_pred CCcccHHHHHHhcCCCCceEEeecccc----CC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH------------
Confidence 333332211 11 11222222222 224578999999988843
Q ss_pred HHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 828 RVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 828 rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
...+.|++.|+.. ...+++|++||.+..|
T Consensus 136 ~~~n~LLk~lEep------~~~~~~Il~t~~~~kl 164 (451)
T PRK06305 136 EAFNSLLKTLEEP------PQHVKFFLATTEIHKI 164 (451)
T ss_pred HHHHHHHHHhhcC------CCCceEEEEeCChHhc
Confidence 2467788888642 2346677777776654
No 146
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.06 E-value=9e-10 Score=124.13 Aligned_cols=130 Identities=21% Similarity=0.237 Sum_probs=88.1
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcE-------
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTF------- 770 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~------- 770 (863)
.|.+||+|.+|++++|++.+++.+...+. .+..+.++|||||||+|||++|+++|+.+..+.
T Consensus 6 ~~~~k~rP~~~~~iig~~~~~~~l~~~i~-----------~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~ 74 (367)
T PRK14970 6 VSARKYRPQTFDDVVGQSHITNTLLNAIE-----------NNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNED 74 (367)
T ss_pred HHHHHHCCCcHHhcCCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 47899999999999999999999998773 133446899999999999999999999885421
Q ss_pred -----EEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC
Q psy11009 771 -----FNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS 841 (863)
Q Consensus 771 -----i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~ 841 (863)
++++... ......++.+++.+.. ..+.||||||+|.+.. ..++.|+..++..
T Consensus 75 ~~~~~~~l~~~~------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~------------~~~~~ll~~le~~- 135 (367)
T PRK14970 75 FSFNIFELDAAS------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS------------AAFNAFLKTLEEP- 135 (367)
T ss_pred CCcceEEecccc------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH------------HHHHHHHHHHhCC-
Confidence 2222111 1122445666665442 2357999999997743 2356777777542
Q ss_pred CCCCCCCceEEEEecCCCCCC
Q psy11009 842 SAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 842 ~~~~~~~~VvVIaTTN~P~~I 862 (863)
....++|.+|+.+..+
T Consensus 136 -----~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 136 -----PAHAIFILATTEKHKI 151 (367)
T ss_pred -----CCceEEEEEeCCcccC
Confidence 2234455556555544
No 147
>KOG0991|consensus
Probab=99.06 E-value=3.4e-10 Score=117.30 Aligned_cols=114 Identities=26% Similarity=0.357 Sum_probs=81.6
Q ss_pred HhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-C----CcE
Q psy11009 696 ERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-G----TTF 770 (863)
Q Consensus 696 ~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-~----~~~ 770 (863)
+..|++||+|..+.||+|+++....+.-.. +...-| +++|.||||||||+.+.++|+++ | -.+
T Consensus 14 ~l~wVeKYrP~~l~dIVGNe~tv~rl~via----------~~gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~v 81 (333)
T KOG0991|consen 14 QLPWVEKYRPSVLQDIVGNEDTVERLSVIA----------KEGNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAV 81 (333)
T ss_pred cchHHHhhCchHHHHhhCCHHHHHHHHHHH----------HcCCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHh
Confidence 345999999999999999999999987644 222333 89999999999999999999998 3 357
Q ss_pred EEEecccccccccchhHHHHHHHHHHHHh-CCC---eEEEEcCCCcccccCCCCchhhHHHHH
Q psy11009 771 FNVCSSTLTSKYRGESEKLVRLLFEMARF-YAP---STIFIDEIDSLCSRRGSESEHEASRRV 829 (863)
Q Consensus 771 i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~-~~p---~ILfIDEID~l~~~R~~~~~~e~~~rv 829 (863)
.++++++-.+- ...++.-..|..-+. ..| .||++||+|++.. +.+.+.+|+
T Consensus 82 LELNASdeRGI---DvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~-----gAQQAlRRt 136 (333)
T KOG0991|consen 82 LELNASDERGI---DVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA-----GAQQALRRT 136 (333)
T ss_pred hhccCcccccc---HHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh-----HHHHHHHHH
Confidence 78888875322 122333345544443 223 4999999999954 234555555
No 148
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.05 E-value=7e-10 Score=123.77 Aligned_cols=129 Identities=20% Similarity=0.297 Sum_probs=90.3
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc--------
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT-------- 769 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~-------- 769 (863)
.|.++|++.+|++++|++.+++.+.+.+. .++.+..+||+||||+|||++|+++|+.+...
T Consensus 3 ~~~~~~rp~~~~~iig~~~~~~~l~~~~~-----------~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c 71 (355)
T TIGR02397 3 VLARKYRPQTFEDVIGQEHIVQTLKNAIK-----------NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPC 71 (355)
T ss_pred cHHHHhCCCcHhhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 58899999999999999999999998773 13344578999999999999999999997432
Q ss_pred ----------------EEEEecccccccccchhHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCchhhHHHHH
Q psy11009 770 ----------------FFNVCSSTLTSKYRGESEKLVRLLFEMARFY----APSTIFIDEIDSLCSRRGSESEHEASRRV 829 (863)
Q Consensus 770 ----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~----~p~ILfIDEID~l~~~R~~~~~~e~~~rv 829 (863)
++.+++.. ......++.+++.+... ...||+|||+|.+.. ..
T Consensus 72 ~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~------------~~ 133 (355)
T TIGR02397 72 NECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK------------SA 133 (355)
T ss_pred CCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH------------HH
Confidence 33333321 11223456666655432 346999999998832 24
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEecCCCCC
Q psy11009 830 KSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861 (863)
Q Consensus 830 ~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ 861 (863)
.+.||..++.. ...+++|.+|+.+..
T Consensus 134 ~~~Ll~~le~~------~~~~~lIl~~~~~~~ 159 (355)
T TIGR02397 134 FNALLKTLEEP------PEHVVFILATTEPHK 159 (355)
T ss_pred HHHHHHHHhCC------ccceeEEEEeCCHHH
Confidence 67788887542 234666677777654
No 149
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.03 E-value=1.2e-09 Score=130.61 Aligned_cols=131 Identities=24% Similarity=0.281 Sum_probs=93.0
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..|.++|++.+|++++|++.+++.|..++.. ++-..++||+||||+|||++|+++|+.+++.
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~ 72 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP 72 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC
Confidence 4578999999999999999999999987741 2223489999999999999999999998652
Q ss_pred -------------------EEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHH
Q psy11009 770 -------------------FFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEAS 826 (863)
Q Consensus 770 -------------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~ 826 (863)
+++++.. .+.....++.+.+.+.. ....|+||||+|.|..
T Consensus 73 ~~Cg~C~~C~~i~~g~h~D~~ei~~~------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~----------- 135 (620)
T PRK14948 73 EPCGKCELCRAIAAGNALDVIEIDAA------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLST----------- 135 (620)
T ss_pred CCCcccHHHHHHhcCCCccEEEEecc------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCH-----------
Confidence 2222221 11223456777766543 2346999999998832
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 827 RRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 827 ~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
...+.||+.|+. +...+++|++|+.|..|
T Consensus 136 -~a~naLLK~LEe------Pp~~tvfIL~t~~~~~l 164 (620)
T PRK14948 136 -AAFNALLKTLEE------PPPRVVFVLATTDPQRV 164 (620)
T ss_pred -HHHHHHHHHHhc------CCcCeEEEEEeCChhhh
Confidence 356788888863 23346677777766543
No 150
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=1.1e-09 Score=124.68 Aligned_cols=131 Identities=21% Similarity=0.180 Sum_probs=84.8
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-----------------
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT----------------- 769 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~----------------- 769 (863)
.|++|+|++.+++.|..++..+...+..+ .+..+.++||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhcccccccc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 58999999999999999997544322211 11245689999999999999999999987443
Q ss_pred ------EEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc
Q psy11009 770 ------FFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG 839 (863)
Q Consensus 770 ------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~ 839 (863)
+..+.+.. ... .-..++.+++.+.. ....|+||||+|.+.. ...+.||+.|+.
T Consensus 81 ~~~hpD~~~i~~~~---~~i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~------------~aanaLLk~LEe 143 (394)
T PRK07940 81 AGTHPDVRVVAPEG---LSI--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE------------RAANALLKAVEE 143 (394)
T ss_pred cCCCCCEEEecccc---ccC--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH------------HHHHHHHHHhhc
Confidence 12222111 111 12336677776653 2346999999999944 245778888853
Q ss_pred CCCCCCCCCceEEEEecCCCCCC
Q psy11009 840 LSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 840 l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
- ...+++|.+|+.|+.|
T Consensus 144 p------~~~~~fIL~a~~~~~l 160 (394)
T PRK07940 144 P------PPRTVWLLCAPSPEDV 160 (394)
T ss_pred C------CCCCeEEEEECChHHC
Confidence 2 2234455555557765
No 151
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.03 E-value=1.6e-09 Score=122.88 Aligned_cols=142 Identities=13% Similarity=0.049 Sum_probs=99.0
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC---CccHHHhhccc-eEEEecCCCH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW---DIDEALRRRLE-KRIYIPLPSK 235 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~---~LD~AllRRFD-~~I~i~lPd~ 235 (863)
...|+||+|||+|.+..++ ...++..|+..++.... .+|.||+++|.++ .+|+.+..||. ..|++++++.
T Consensus 136 ~~~~~viviDE~d~l~~~~----~~~~l~~l~~~~~~~~~--~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~ 209 (394)
T PRK00411 136 RDRVLIVALDDINYLFEKE----GNDVLYSLLRAHEEYPG--ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTA 209 (394)
T ss_pred cCCEEEEEECCHhHhhccC----CchHHHHHHHhhhccCC--CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCH
Confidence 4578999999999998322 12455666665554432 2688899988764 67888887774 6789999999
Q ss_pred HHHHHHHHHHhccC-C--CCCcccHHHHhhhCCCCCH--HHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCH
Q psy11009 236 AGREALLKINLKEV-K--VDPAVDLTHIASQLDGYSG--ADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQ 310 (863)
Q Consensus 236 ~~R~~IL~~~l~~~-~--l~~dvdl~~LA~~TeG~SG--ADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~ 310 (863)
++..+||+..+... . .-.+-.++.+++.+.+.+| ..+-.+|+.|+..|..+. ...|+.
T Consensus 210 ~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~-----------------~~~I~~ 272 (394)
T PRK00411 210 DEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREG-----------------SRKVTE 272 (394)
T ss_pred HHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcC-----------------CCCcCH
Confidence 99999999988532 1 1123336777887755443 334467777776666654 447999
Q ss_pred HHHHHHHHHhcCCC
Q psy11009 311 RDFEEALARCNKSV 324 (863)
Q Consensus 311 ~Df~~AL~~v~psv 324 (863)
+|+..|+.++.++.
T Consensus 273 ~~v~~a~~~~~~~~ 286 (394)
T PRK00411 273 EDVRKAYEKSEIVH 286 (394)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999885443
No 152
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.03 E-value=4e-09 Score=99.83 Aligned_cols=124 Identities=40% Similarity=0.511 Sum_probs=78.9
Q ss_pred chHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchhHHH
Q psy11009 713 ELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGESEKL 789 (863)
Q Consensus 713 Gl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~e~~ 789 (863)
|.+.+.+.+...+. ....++++++||||||||++++.++..+ +.+++.+++..............
T Consensus 2 ~~~~~~~~i~~~~~------------~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALE------------LPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHh------------CCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 55666666666552 1134689999999999999999999998 88999999887655433222111
Q ss_pred ---HHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCC
Q psy11009 790 ---VRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 790 ---ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~ 860 (863)
....+.......+.+|+|||++.+.. .....++..+..+.........+.+|++||.+.
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~~~------------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSLSR------------GAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhhhH------------HHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 12223344456789999999998722 123445555544322100123477888888765
No 153
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.02 E-value=1.7e-09 Score=118.53 Aligned_cols=131 Identities=27% Similarity=0.304 Sum_probs=84.9
Q ss_pred HhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC-----CcE
Q psy11009 696 ERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG-----TTF 770 (863)
Q Consensus 696 ~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~-----~~~ 770 (863)
+..|+++|+|.+|++++|.+++++.+..++. .... .++||+||||||||++++++++++. ..+
T Consensus 4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~----------~~~~--~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~ 71 (319)
T PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVK----------EKNM--PHLLFAGPPGTGKTTAALALARELYGEDWRENF 71 (319)
T ss_pred cCccchhhCCCcHHHhcCcHHHHHHHHHHHh----------CCCC--CeEEEECCCCCCHHHHHHHHHHHHcCCccccce
Confidence 3569999999999999999999999998773 1111 3699999999999999999999973 345
Q ss_pred EEEecccccccccchhHHHHHHHHHHHHh-----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCC
Q psy11009 771 FNVCSSTLTSKYRGESEKLVRLLFEMARF-----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAED 845 (863)
Q Consensus 771 i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~-----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~ 845 (863)
+.+++++... .......+...+.. ..+.+|+|||+|.+... ....|+..++....
T Consensus 72 i~~~~~~~~~-----~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~------------~~~~L~~~le~~~~--- 131 (319)
T PRK00440 72 LELNASDERG-----IDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSD------------AQQALRRTMEMYSQ--- 131 (319)
T ss_pred EEeccccccc-----hHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHH------------HHHHHHHHHhcCCC---
Confidence 5555443211 11111122222221 23569999999988431 23456666654322
Q ss_pred CCCceEEEEecCCCCC
Q psy11009 846 SSKVVMVLAATNFPWE 861 (863)
Q Consensus 846 ~~~~VvVIaTTN~P~~ 861 (863)
.+.+|.++|.+..
T Consensus 132 ---~~~lIl~~~~~~~ 144 (319)
T PRK00440 132 ---NTRFILSCNYSSK 144 (319)
T ss_pred ---CCeEEEEeCCccc
Confidence 2345556666554
No 154
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.02 E-value=1.7e-09 Score=123.48 Aligned_cols=61 Identities=21% Similarity=0.339 Sum_probs=51.8
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 768 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~ 768 (863)
..+.++|+|.+|++|+|++.+++.|..++. .++.+..+||+||||||||++|+++|+.+.+
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 346789999999999999999999988773 1233456999999999999999999999865
No 155
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=1.5e-09 Score=129.08 Aligned_cols=134 Identities=20% Similarity=0.177 Sum_probs=91.0
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEe--
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC-- 774 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs-- 774 (863)
+.+.+||+|.+|++|+|++.+++.|..++. .++.+..+||+||+|+|||++|+++|+.+++.....+
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~ 80 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGG 80 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCC
Confidence 457789999999999999999999998773 2344568999999999999999999999865321111
Q ss_pred ----c---------------ccccc----cccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHH
Q psy11009 775 ----S---------------STLTS----KYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASR 827 (863)
Q Consensus 775 ----~---------------s~l~~----~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~ 827 (863)
. .++.. ... .-..+|.+.+.++. ....|+||||+|.+..
T Consensus 81 ~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~--gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~------------ 146 (598)
T PRK09111 81 PTIDLCGVGEHCQAIMEGRHVDVLEMDAASHT--GVDDIREIIESVRYRPVSARYKVYIIDEVHMLST------------ 146 (598)
T ss_pred CccccCcccHHHHHHhcCCCCceEEecccccC--CHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCH------------
Confidence 0 00000 011 12345666665543 2357999999988842
Q ss_pred HHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCC
Q psy11009 828 RVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861 (863)
Q Consensus 828 rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ 861 (863)
...+.||+.|+.. ...+++|.+|+.+..
T Consensus 147 ~a~naLLKtLEeP------p~~~~fIl~tte~~k 174 (598)
T PRK09111 147 AAFNALLKTLEEP------PPHVKFIFATTEIRK 174 (598)
T ss_pred HHHHHHHHHHHhC------CCCeEEEEEeCChhh
Confidence 2467888888543 334566666666554
No 156
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=1.4e-09 Score=126.81 Aligned_cols=130 Identities=18% Similarity=0.231 Sum_probs=86.6
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC--------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT-------- 768 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~-------- 768 (863)
..|.++|+|.+|++++|++.+.+.+..++. .++....+||+||||+|||++|+++|+.+++
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~p 72 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVK-----------LQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEP 72 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCC
Confidence 468899999999999999999999998873 1233346789999999999999999999853
Q ss_pred ----------------cEEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 769 ----------------TFFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 769 ----------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
.+++++++. ......++.+.+.+.. ....|+||||+|.+.. .
T Consensus 73 c~~c~nc~~i~~g~~~d~~eidaas------~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~------------~ 134 (486)
T PRK14953 73 CGKCENCVEIDKGSFPDLIEIDAAS------NRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK------------E 134 (486)
T ss_pred CCccHHHHHHhcCCCCcEEEEeCcc------CCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH------------H
Confidence 122222211 0112234455544432 3457999999998742 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ 861 (863)
..+.||..|+.. ...+++|.+|+.+..
T Consensus 135 a~naLLk~LEep------p~~~v~Il~tt~~~k 161 (486)
T PRK14953 135 AFNALLKTLEEP------PPRTIFILCTTEYDK 161 (486)
T ss_pred HHHHHHHHHhcC------CCCeEEEEEECCHHH
Confidence 456778777532 223445555555543
No 157
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=8.4e-10 Score=118.87 Aligned_cols=131 Identities=27% Similarity=0.363 Sum_probs=89.9
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhc---cCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc-cccchh
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKG---IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRGES 786 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~---~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~-~~~Ge~ 786 (863)
++|++.+|+.|.-+|-.+.++-..... ......++||.||+|||||+||+.+|+.+++||..-++.+|.. .|+|+.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGED 142 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGED 142 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchh
Confidence 788888888776655311111111000 1122348999999999999999999999999999999998874 799977
Q ss_pred HHH-HHHHHHHHH----hCCCeEEEEcCCCcccccCCCCc-hhhH-HHHHHHHHHHHHhcCC
Q psy11009 787 EKL-VRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSES-EHEA-SRRVKSELLVQMDGLS 841 (863)
Q Consensus 787 e~~-ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~-~~e~-~~rv~~~LL~~lD~l~ 841 (863)
-.+ +..+.+.+. +...+||+|||||.|+.+..+.+ ..++ ..-++..||+.|+|--
T Consensus 143 VENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTv 204 (408)
T COG1219 143 VENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTV 204 (408)
T ss_pred HHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCce
Confidence 554 444554443 23467999999999987653222 1222 2358899999999753
No 158
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.99 E-value=2.7e-09 Score=130.82 Aligned_cols=136 Identities=22% Similarity=0.265 Sum_probs=92.5
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc--------
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-------- 780 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~-------- 780 (863)
.++.|++.+|++|.+++...... .......++|+||||||||++++++|+.++.+++.++.+....
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~------~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~ 395 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRV------NKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHR 395 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhc------ccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccch
Confidence 34899999999999887522211 1123347999999999999999999999999999988665432
Q ss_pred -cccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc---------CCCCCCCCCce
Q psy11009 781 -KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG---------LSSAEDSSKVV 850 (863)
Q Consensus 781 -~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~---------l~~~~~~~~~V 850 (863)
.|.|.....+...+..+.... .||||||||.+.....+ ...+.||..||. +....-.-..|
T Consensus 396 ~~~~g~~~G~~~~~l~~~~~~~-~villDEidk~~~~~~g--------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v 466 (784)
T PRK10787 396 RTYIGSMPGKLIQKMAKVGVKN-PLFLLDEIDKMSSDMRG--------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDV 466 (784)
T ss_pred hccCCCCCcHHHHHHHhcCCCC-CEEEEEChhhcccccCC--------CHHHHHHHHhccccEEEEecccccccccCCce
Confidence 355655555555555554334 48999999999764221 134566766662 11111123668
Q ss_pred EEEEecCCC
Q psy11009 851 MVLAATNFP 859 (863)
Q Consensus 851 vVIaTTN~P 859 (863)
++|||+|.-
T Consensus 467 ~~i~TaN~~ 475 (784)
T PRK10787 467 MFVATSNSM 475 (784)
T ss_pred EEEEcCCCC
Confidence 999999865
No 159
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.99 E-value=2.2e-09 Score=127.16 Aligned_cols=131 Identities=18% Similarity=0.182 Sum_probs=89.6
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..+..+|+|.+|++|+|++.+++.|..++. .++.+..+||+||||+|||++|+++|+.+++.
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~p 72 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIE-----------SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMP 72 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCC
Confidence 346789999999999999999999999873 12334579999999999999999999998642
Q ss_pred -----------------EEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 770 -----------------FFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 770 -----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
++.+++.. ...-..++.+.+.+. .....|+||||+|.+.. .
T Consensus 73 C~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~------------~ 134 (563)
T PRK06647 73 CGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSN------------S 134 (563)
T ss_pred CccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCH------------H
Confidence 22222211 011223444443333 23457999999998832 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.++.||+.|+. +...+++|.+|+.+..|
T Consensus 135 a~naLLK~LEe------pp~~~vfI~~tte~~kL 162 (563)
T PRK06647 135 AFNALLKTIEE------PPPYIVFIFATTEVHKL 162 (563)
T ss_pred HHHHHHHhhcc------CCCCEEEEEecCChHHh
Confidence 56778888753 33456777777766543
No 160
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.97 E-value=2.2e-09 Score=130.23 Aligned_cols=98 Identities=22% Similarity=0.333 Sum_probs=71.4
Q ss_pred hhhhcCCCCccccccchHHHHH---HHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKR---LLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~---~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.|.++++|.++++++|++.+.. .+...+. . ....++||+||||||||++|+++|+.++.+|+.++
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~----------~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIK----------A--DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHh----------c--CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 5788999999999999999885 4544442 1 12248999999999999999999999999999888
Q ss_pred cccccccccchhHHHHHHHHHHH-----HhCCCeEEEEcCCCccc
Q psy11009 775 SSTLTSKYRGESEKLVRLLFEMA-----RFYAPSTIFIDEIDSLC 814 (863)
Q Consensus 775 ~s~l~~~~~Ge~e~~ir~lf~~A-----~~~~p~ILfIDEID~l~ 814 (863)
+.... ...++..+..+ ......+|||||||.+.
T Consensus 85 a~~~~-------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln 122 (725)
T PRK13341 85 AVLAG-------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFN 122 (725)
T ss_pred hhhhh-------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC
Confidence 75321 11123333322 12346799999999884
No 161
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.96 E-value=3.4e-09 Score=124.18 Aligned_cols=130 Identities=21% Similarity=0.224 Sum_probs=89.3
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC---------
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT--------- 768 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~--------- 768 (863)
.|.+||+|.+|++++|++.+++.|...+. .++.+..+||+||||+|||++|+++|+.+..
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~-----------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC 71 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPC 71 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCC
Confidence 47789999999999999999999998773 1233346799999999999999999998732
Q ss_pred ---------------cEEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHH
Q psy11009 769 ---------------TFFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRV 829 (863)
Q Consensus 769 ---------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv 829 (863)
.++.++++.- . .-..++.+.+.... ....|++|||+|.+.. ..
T Consensus 72 ~~C~~C~~~~~~~h~dv~eldaas~----~--gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~------------~A 133 (535)
T PRK08451 72 DTCIQCQSALENRHIDIIEMDAASN----R--GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTK------------EA 133 (535)
T ss_pred cccHHHHHHhhcCCCeEEEeccccc----c--CHHHHHHHHHHHhhCcccCCeEEEEEECcccCCH------------HH
Confidence 2444433221 0 12334555444321 2246999999988843 35
Q ss_pred HHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 830 KSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 830 ~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
++.||+.|+.. ...+.+|.+|+.|..|
T Consensus 134 ~NALLK~LEEp------p~~t~FIL~ttd~~kL 160 (535)
T PRK08451 134 FNALLKTLEEP------PSYVKFILATTDPLKL 160 (535)
T ss_pred HHHHHHHHhhc------CCceEEEEEECChhhC
Confidence 67888888543 3346666677777654
No 162
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.95 E-value=4.5e-09 Score=125.42 Aligned_cols=60 Identities=20% Similarity=0.319 Sum_probs=51.2
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 768 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~ 768 (863)
.+.++|+|.+|++|+|++.+++.|...+. .++-+..+||+||||||||++|+++|+.+.+
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 45689999999999999999999988763 1233356999999999999999999999966
No 163
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.94 E-value=4e-09 Score=120.61 Aligned_cols=115 Identities=18% Similarity=0.180 Sum_probs=81.3
Q ss_pred cEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCC---ccHHHhhccce--EEEecCCCHHH
Q psy11009 163 PTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWD---IDEALRRRLEK--RIYIPLPSKAG 237 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~---LD~AllRRFD~--~I~i~lPd~~~ 237 (863)
+.+|+|||+|.+..++ .....|+..++.+...+ ..+||++++.|.. +|+.+..||.. .++|+.||.++
T Consensus 200 ~dlLiiDDi~~l~~~~------~~~~~l~~~~n~~~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~ 272 (405)
T TIGR00362 200 VDLLLIDDIQFLAGKE------RTQEEFFHTFNALHENG-KQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLET 272 (405)
T ss_pred CCEEEEehhhhhcCCH------HHHHHHHHHHHHHHHCC-CCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHH
Confidence 4699999999987543 12234444444443332 4567766666765 56778889985 79999999999
Q ss_pred HHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy11009 238 REALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMR 285 (863)
Q Consensus 238 R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air 285 (863)
|..||+..+....+. ++-.++.||....| +..+|+.+++.....+..
T Consensus 273 r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~ 320 (405)
T TIGR00362 273 RLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASL 320 (405)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence 999999999655443 34447889988864 788999888876555543
No 164
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.94 E-value=3.7e-09 Score=126.29 Aligned_cols=129 Identities=20% Similarity=0.242 Sum_probs=85.0
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc--------
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT-------- 769 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~-------- 769 (863)
.|.+||++.+|++|+|++.+++.|..++.. ++....+||+||||||||++|+++|+.+++.
T Consensus 5 ~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~ 73 (585)
T PRK14950 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRP 73 (585)
T ss_pred HHHHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 467899999999999999999999887731 2233467999999999999999999988532
Q ss_pred -----------------EEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 770 -----------------FFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 770 -----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
++.+++.. .. ....++.+.+.+.. ....||||||+|.+.. .
T Consensus 74 c~~c~~c~~i~~~~~~d~~~i~~~~----~~--~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~------------~ 135 (585)
T PRK14950 74 CGTCEMCRAIAEGSAVDVIEMDAAS----HT--SVDDAREIIERVQFRPALARYKVYIIDEVHMLST------------A 135 (585)
T ss_pred CccCHHHHHHhcCCCCeEEEEeccc----cC--CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH------------H
Confidence 22222211 01 12223444433322 3356999999998843 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ 861 (863)
.++.||+.|+... ..+++|.+|+.+..
T Consensus 136 a~naLLk~LEepp------~~tv~Il~t~~~~k 162 (585)
T PRK14950 136 AFNALLKTLEEPP------PHAIFILATTEVHK 162 (585)
T ss_pred HHHHHHHHHhcCC------CCeEEEEEeCChhh
Confidence 4677888886432 23455555555443
No 165
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.93 E-value=4.2e-09 Score=122.08 Aligned_cols=133 Identities=20% Similarity=0.201 Sum_probs=93.2
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCC---ccHHHhhccc--eEEEecCCCHH
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWD---IDEALRRRLE--KRIYIPLPSKA 236 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~---LD~AllRRFD--~~I~i~lPd~~ 236 (863)
.+.+|+|||+|.+..++. ....|+..++.+...+ ..+||++++.|.. ||+++..||. ..++|..||.+
T Consensus 211 ~~dlLiiDDi~~l~~~~~------~~~~l~~~~n~l~~~~-~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~ 283 (450)
T PRK00149 211 SVDVLLIDDIQFLAGKER------TQEEFFHTFNALHEAG-KQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLE 283 (450)
T ss_pred cCCEEEEehhhhhcCCHH------HHHHHHHHHHHHHHCC-CcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHH
Confidence 466999999999876432 2234444444443333 4467766666665 7788888997 48999999999
Q ss_pred HHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHH
Q psy11009 237 GREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEE 315 (863)
Q Consensus 237 ~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~ 315 (863)
.|..|++..+....+. ++.-++.||..+.| +..+|+.+++.....+... ..+||.+.+.+
T Consensus 284 ~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~------------------~~~it~~~~~~ 344 (450)
T PRK00149 284 TRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT------------------GKPITLELAKE 344 (450)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh------------------CCCCCHHHHHH
Confidence 9999999999654333 23347888988875 8888888887765544433 23688888888
Q ss_pred HHHHh
Q psy11009 316 ALARC 320 (863)
Q Consensus 316 AL~~v 320 (863)
+|..+
T Consensus 345 ~l~~~ 349 (450)
T PRK00149 345 ALKDL 349 (450)
T ss_pred HHHHh
Confidence 88765
No 166
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=98.92 E-value=4.4e-09 Score=128.90 Aligned_cols=200 Identities=11% Similarity=0.053 Sum_probs=126.6
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcch-hHHHHHH-HhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEE
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLK-FKEAITL-ALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVA 168 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s-~~e~~~~-~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFi 168 (863)
|+||||||+++++++++ ++.+..+...|... .++..-+ ..|+|....++.+.+.++ ....| ||||
T Consensus 356 GppG~GKTtl~~~ia~~----l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~--------~~~~~-vill 422 (784)
T PRK10787 356 GPPGVGKTSLGQSIAKA----TGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKV--------GVKNP-LFLL 422 (784)
T ss_pred CCCCCCHHHHHHHHHHH----hCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhc--------CCCCC-EEEE
Confidence 99999999999999996 44555444444432 2222112 347888888877777652 22344 7899
Q ss_pred ecccccccccccchhHhHHHHHHHHhhcc-----C-------CCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHH
Q psy11009 169 KMFSSLAVQKLLRGSKTFRTLCIHKYRLL-----T-------FPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKA 236 (863)
Q Consensus 169 DEiDal~~~R~~~~~~~v~n~lL~~ld~~-----~-------~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~ 236 (863)
||+|.+...... ...+.||..||.- . -.-.+|++|||||.. .|++||+.||+ .|.+..++.+
T Consensus 423 DEidk~~~~~~g----~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~-ii~~~~~t~e 496 (784)
T PRK10787 423 DEIDKMSSDMRG----DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRME-VIRLSGYTED 496 (784)
T ss_pred EChhhcccccCC----CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhccee-eeecCCCCHH
Confidence 999999864322 2345677666531 1 111389999999988 59999999996 6889999999
Q ss_pred HHHHHHHHHhc-c----CCCC---Cccc---HHHHhh-hCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCcccc
Q psy11009 237 GREALLKINLK-E----VKVD---PAVD---LTHIAS-QLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEEL 304 (863)
Q Consensus 237 ~R~~IL~~~l~-~----~~l~---~dvd---l~~LA~-~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~ 304 (863)
+..+|.+.|+- + ..+. -.++ ++.|++ .+..+-...|+.++...+..++.+.+.... ..
T Consensus 497 ek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~----------~~ 566 (784)
T PRK10787 497 EKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKS----------LK 566 (784)
T ss_pred HHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCC----------Cc
Confidence 99999999993 1 1111 1122 344554 233444567777766665555554322110 01
Q ss_pred CCCCCHHHHHHHHHH
Q psy11009 305 DLPVSQRDFEEALAR 319 (863)
Q Consensus 305 ~~~Vt~~Df~~AL~~ 319 (863)
...|+.+++...+-.
T Consensus 567 ~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 567 HIEINGDNLHDYLGV 581 (784)
T ss_pred eeeecHHHHHHHhCC
Confidence 236788887776653
No 167
>KOG1969|consensus
Probab=98.92 E-value=4.5e-09 Score=123.07 Aligned_cols=115 Identities=25% Similarity=0.375 Sum_probs=83.6
Q ss_pred HHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhh-----------------------ccCCCC-ceEEEECC
Q psy11009 695 LERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK-----------------------GIRRPW-KGVLMVGP 750 (863)
Q Consensus 695 ~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~-----------------------~~~~p~-kgvLL~GP 750 (863)
..+.|+++|.+..|.||.|.+.+-+.+..|+. +|.|-+|. ..++|. |-+||+||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK--~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~Gp 334 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLK--QWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGP 334 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHH--hhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecC
Confidence 34589999999999999999999999988873 34444333 122333 45789999
Q ss_pred CCCChHHHHHHHHHHhCCcEEEEecccccccccchhHHHHHHHHHHHH-h---CCCeEEEEcCCCcc
Q psy11009 751 PGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMAR-F---YAPSTIFIDEIDSL 813 (863)
Q Consensus 751 PGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~-~---~~p~ILfIDEID~l 813 (863)
||-|||+||+.||+++|+.++++++++-.+.-. ....+..+..+-. . ..|.+|+|||||.-
T Consensus 335 pGlGKTTLAHViAkqaGYsVvEINASDeRt~~~--v~~kI~~avq~~s~l~adsrP~CLViDEIDGa 399 (877)
T KOG1969|consen 335 PGLGKTTLAHVIAKQAGYSVVEINASDERTAPM--VKEKIENAVQNHSVLDADSRPVCLVIDEIDGA 399 (877)
T ss_pred CCCChhHHHHHHHHhcCceEEEecccccccHHH--HHHHHHHHHhhccccccCCCcceEEEecccCC
Confidence 999999999999999999999999998653211 1222222222222 1 56999999999854
No 168
>PRK06893 DNA replication initiation factor; Validated
Probab=98.92 E-value=8.4e-09 Score=109.16 Aligned_cols=156 Identities=8% Similarity=-0.004 Sum_probs=96.6
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEec
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKM 170 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDE 170 (863)
|.||||||+++.++++. +..+++.. -|..+ ..+...+..+++++ ..+.+|+|||
T Consensus 46 G~~G~GKThL~~ai~~~--~~~~~~~~-------~y~~~-------~~~~~~~~~~~~~~----------~~~dlLilDD 99 (229)
T PRK06893 46 GGKSSGKSHLLKAVSNH--YLLNQRTA-------IYIPL-------SKSQYFSPAVLENL----------EQQDLVCLDD 99 (229)
T ss_pred CCCCCCHHHHHHHHHHH--HHHcCCCe-------EEeeH-------HHhhhhhHHHHhhc----------ccCCEEEEeC
Confidence 89999999999999974 11111111 01000 01111222344321 2346999999
Q ss_pred ccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCcc---HHHhhc--cceEEEecCCCHHHHHHHHHHH
Q psy11009 171 FSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDID---EALRRR--LEKRIYIPLPSKAGREALLKIN 245 (863)
Q Consensus 171 iDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD---~AllRR--FD~~I~i~lPd~~~R~~IL~~~ 245 (863)
++.+...+. ....|+..++.....+..++|++++..|..++ +.+..| +...+.++.||.+.|.+||+..
T Consensus 100 i~~~~~~~~------~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~ 173 (229)
T PRK06893 100 LQAVIGNEE------WELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRN 173 (229)
T ss_pred hhhhcCChH------HHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHH
Confidence 999875431 11234444443333332456777777788765 788885 5689999999999999999988
Q ss_pred hccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 246 LKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 246 l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.....+. ++.-++.|+...+| +.+.+..++..-
T Consensus 174 a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 207 (229)
T PRK06893 174 AYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLL 207 (229)
T ss_pred HHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHH
Confidence 8533332 23347789998874 777777777654
No 169
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.90 E-value=4.8e-09 Score=119.95 Aligned_cols=189 Identities=13% Similarity=0.098 Sum_probs=123.1
Q ss_pred cceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHH-HHHhhccccee
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLY-RSITNRGFYIE 154 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~-r~i~~~~~~l~ 154 (863)
..+|++ |.||||||++|+++++. +..|.+..+..- + ..+.|||....++ +.++..+.
T Consensus 109 ~~iLl~---------Gp~GtGKT~lAr~lA~~----l~~pf~~id~~~--l----~~~gyvG~d~e~~l~~l~~~~~--- 166 (412)
T PRK05342 109 SNILLI---------GPTGSGKTLLAQTLARI----LDVPFAIADATT--L----TEAGYVGEDVENILLKLLQAAD--- 166 (412)
T ss_pred ceEEEE---------cCCCCCHHHHHHHHHHH----hCCCceecchhh--c----ccCCcccchHHHHHHHHHHhcc---
Confidence 456677 99999999999999985 445555433211 1 1246888865443 45554322
Q ss_pred eeccCCCCcEEEEEecccccccccccc-----h-hHhHHHHHHHHhhccC----------CCCCCeEEEEccCCCC----
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLLR-----G-SKTFRTLCIHKYRLLT----------FPSTPVQYSIQKGIPW---- 214 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~~-----~-~~~v~n~lL~~ld~~~----------~~~~~VivIaATN~p~---- 214 (863)
+......++||||||+|.+..++.+. . ...+.+.||..|++-. .+....++|.|||-..
T Consensus 167 -~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~G 245 (412)
T PRK05342 167 -YDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGG 245 (412)
T ss_pred -ccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecc
Confidence 23345678999999999998775331 1 1358899999997531 1112456676666511
Q ss_pred ------------------------------------------------CccHHHhhccceEEEecCCCHHHHHHHHHH--
Q psy11009 215 ------------------------------------------------DIDEALRRRLEKRIYIPLPSKAGREALLKI-- 244 (863)
Q Consensus 215 ------------------------------------------------~LD~AllRRFD~~I~i~lPd~~~R~~IL~~-- 244 (863)
-+-|+|+-|+|..++|..-+.+...+|+..
T Consensus 246 af~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~ 325 (412)
T PRK05342 246 AFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPK 325 (412)
T ss_pred cccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHH
Confidence 046777789999999999999999999973
Q ss_pred --Hhcc---------CCCC-CcccHHHHhhh--CCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 245 --NLKE---------VKVD-PAVDLTHIASQ--LDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 245 --~l~~---------~~l~-~dvdl~~LA~~--TeG~SGADI~~lv~~Aal~air~~ 287 (863)
.+++ +.+. .+--++.||+. ..++-...|+.++.......+.+.
T Consensus 326 ~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~ 382 (412)
T PRK05342 326 NALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFEL 382 (412)
T ss_pred HHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhc
Confidence 3321 1111 12225677775 456667788888888877766653
No 170
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=98.90 E-value=4.4e-09 Score=124.24 Aligned_cols=131 Identities=13% Similarity=0.089 Sum_probs=94.6
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhh-cc-------------------------CCCCCCeEEEEccCCCCC
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR-LL-------------------------TFPSTPVQYSIQKGIPWD 215 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld-~~-------------------------~~~~~~VivIaATN~p~~ 215 (863)
...+|||||+|.+-. ...+.||..|+ +. ..+.+-.++++|||.|+.
T Consensus 175 ~gG~L~IdEI~~L~~--------~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~ 246 (531)
T TIGR02902 175 HGGVLFIDEIGELHP--------VQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEE 246 (531)
T ss_pred CCcEEEEechhhCCH--------HHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCccc
Confidence 346999999998853 34455555442 10 011212455566778999
Q ss_pred ccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChh
Q psy11009 216 IDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPE 294 (863)
Q Consensus 216 LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~ 294 (863)
|+||+++|+. .|+++.++.+++..|++..+++..+. ++-.++.|+..+ .+++++.++|+.|+..|..+.
T Consensus 247 L~paLrsR~~-~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~--~n~Rel~nll~~Aa~~A~~~~------- 316 (531)
T TIGR02902 247 IPPALRSRCV-EIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYA--SNGREAVNIVQLAAGIALGEG------- 316 (531)
T ss_pred CChHHhhhhh-eeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhh--hhHHHHHHHHHHHHHHHhhCC-------
Confidence 9999999996 57788888999999999999765543 233466777776 489999999999988776653
Q ss_pred hhccCCccccCCCCCHHHHHHHHHHh
Q psy11009 295 QIRQIPKEELDLPVSQRDFEEALARC 320 (863)
Q Consensus 295 ~~~~~~~~~~~~~Vt~~Df~~AL~~v 320 (863)
+..|+.+|+..++..-
T Consensus 317 ----------~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 317 ----------RKRILAEDIEWVAENG 332 (531)
T ss_pred ----------CcEEcHHHHHHHhCCc
Confidence 3479999999998643
No 171
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.89 E-value=9e-09 Score=108.95 Aligned_cols=130 Identities=25% Similarity=0.338 Sum_probs=94.0
Q ss_pred cCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccc
Q psy11009 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTL 778 (863)
Q Consensus 702 k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l 778 (863)
...++.+++|+|.+.+++.|.+... .+.. +.|..++||+|++|||||++++++..+. |..+++|...++
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~------~Fl~--G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L 91 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTE------QFLQ--GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDL 91 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHH------HHHc--CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHh
Confidence 3457789999999999999998774 2222 3577899999999999999999999876 788999987776
Q ss_pred cccccchhHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecC
Q psy11009 779 TSKYRGESEKLVRLLFEMAR-FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~-~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN 857 (863)
.. +..+++..+ ....-|||+|++. +.. .+ .-...|...|||-.. ....+|+|.+|+|
T Consensus 92 ~~---------l~~l~~~l~~~~~kFIlf~DDLs--Fe~------~d---~~yk~LKs~LeGgle--~~P~NvliyATSN 149 (249)
T PF05673_consen 92 GD---------LPELLDLLRDRPYKFILFCDDLS--FEE------GD---TEYKALKSVLEGGLE--ARPDNVLIYATSN 149 (249)
T ss_pred cc---------HHHHHHHHhcCCCCEEEEecCCC--CCC------Cc---HHHHHHHHHhcCccc--cCCCcEEEEEecc
Confidence 32 234444433 3346799999864 221 11 123667777887643 3567899999999
Q ss_pred CCCC
Q psy11009 858 FPWE 861 (863)
Q Consensus 858 ~P~~ 861 (863)
|-..
T Consensus 150 RRHL 153 (249)
T PF05673_consen 150 RRHL 153 (249)
T ss_pred hhhc
Confidence 8543
No 172
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.87 E-value=1.3e-08 Score=102.92 Aligned_cols=124 Identities=27% Similarity=0.359 Sum_probs=78.1
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc-----
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY----- 782 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~----- 782 (863)
|+|.+...+++.+.+. .....+.+|||+|++||||+.+|++|-... +.||+.++|+.+....
T Consensus 1 liG~s~~m~~~~~~~~----------~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAK----------RAASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHH----------HHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHH----------HHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 5677777777777662 223333689999999999999999998765 5799999998864321
Q ss_pred cchhH-------HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc-----CCCCCCCCCce
Q psy11009 783 RGESE-------KLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG-----LSSAEDSSKVV 850 (863)
Q Consensus 783 ~Ge~e-------~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~-----l~~~~~~~~~V 850 (863)
.|... .....+++.|. .++||||||+.|.. .++..|+..|+. +.......-.|
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~---~GtL~Ld~I~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQAN---GGTLFLDEIEDLPP------------ELQAKLLRVLEEGKFTRLGSDKPVPVDV 135 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTT---TSEEEEETGGGS-H------------HHHHHHHHHHHHSEEECCTSSSEEE--E
T ss_pred hccccccccccccccCCceeecc---ceEEeecchhhhHH------------HHHHHHHHHHhhchhccccccccccccc
Confidence 11100 00123444443 78999999998854 477888888862 22222223468
Q ss_pred EEEEecCCC
Q psy11009 851 MVLAATNFP 859 (863)
Q Consensus 851 vVIaTTN~P 859 (863)
.||+||+.+
T Consensus 136 RiI~st~~~ 144 (168)
T PF00158_consen 136 RIIASTSKD 144 (168)
T ss_dssp EEEEEESS-
T ss_pred eEEeecCcC
Confidence 999999975
No 173
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.86 E-value=2.3e-09 Score=124.41 Aligned_cols=137 Identities=20% Similarity=0.254 Sum_probs=97.3
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcE--E---
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTF--F--- 771 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~--i--- 771 (863)
..+..||+|.+|+|++|++.+.+.|..++. .++-..+.||+||-|||||++||.+|+.+++.- .
T Consensus 4 q~L~rKyRP~~F~evvGQe~v~~~L~nal~-----------~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~eP 72 (515)
T COG2812 4 QVLARKYRPKTFDDVVGQEHVVKTLSNALE-----------NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEP 72 (515)
T ss_pred HHHHHHhCcccHHHhcccHHHHHHHHHHHH-----------hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCc
Confidence 456789999999999999999999999884 122335799999999999999999999986542 0
Q ss_pred --EE-eccccccc-c---------cchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHH
Q psy11009 772 --NV-CSSTLTSK-Y---------RGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELL 834 (863)
Q Consensus 772 --~v-s~s~l~~~-~---------~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL 834 (863)
.. .|-.+... + ....-..+|.+.+.+.. ..+.|.+|||++-+.. ...+.||
T Consensus 73 C~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~------------~afNALL 140 (515)
T COG2812 73 CGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK------------QAFNALL 140 (515)
T ss_pred chhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH------------HHHHHHh
Confidence 00 00011100 0 01123346666666652 3456999999987743 4788888
Q ss_pred HHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 835 VQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 835 ~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
+.+ +++..+|++|.||..|.+|
T Consensus 141 KTL------EEPP~hV~FIlATTe~~Ki 162 (515)
T COG2812 141 KTL------EEPPSHVKFILATTEPQKI 162 (515)
T ss_pred ccc------ccCccCeEEEEecCCcCcC
Confidence 887 5677889999999888876
No 174
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.84 E-value=1.9e-08 Score=120.70 Aligned_cols=136 Identities=14% Similarity=0.087 Sum_probs=87.6
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCC---CCCccHHHhhccce-EEEecCCCH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI---PWDIDEALRRRLEK-RIYIPLPSK 235 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~---p~~LD~AllRRFD~-~I~i~lPd~ 235 (863)
...++||+|||||.|..+. ..++-.|+.+ ......+|+|||+||. |+.||+.+..||.. .|.|++++.
T Consensus 867 ~r~v~IIILDEID~L~kK~-----QDVLYnLFR~---~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTa 938 (1164)
T PTZ00112 867 NRNVSILIIDEIDYLITKT-----QKVLFTLFDW---PTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKG 938 (1164)
T ss_pred cccceEEEeehHhhhCccH-----HHHHHHHHHH---hhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCH
Confidence 3457899999999998642 2333333333 2233447999999996 77888988878865 488899999
Q ss_pred HHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHH
Q psy11009 236 AGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFE 314 (863)
Q Consensus 236 ~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~ 314 (863)
+++.+||+..+...... .+--++.+|++... .++|++.++. ....|+... ....|+.+|+.
T Consensus 939 EQL~dILk~RAe~A~gVLdDdAIELIArkVAq-~SGDARKALD-ILRrAgEik----------------egskVT~eHVr 1000 (1164)
T PTZ00112 939 DEIEKIIKERLENCKEIIDHTAIQLCARKVAN-VSGDIRKALQ-ICRKAFENK----------------RGQKIVPRDIT 1000 (1164)
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhh-cCCHHHHHHH-HHHHHHhhc----------------CCCccCHHHHH
Confidence 99999999988653211 22235667775543 3456665432 222222110 02268999999
Q ss_pred HHHHHhc
Q psy11009 315 EALARCN 321 (863)
Q Consensus 315 ~AL~~v~ 321 (863)
.|+.++.
T Consensus 1001 kAleeiE 1007 (1164)
T PTZ00112 1001 EATNQLF 1007 (1164)
T ss_pred HHHHHHH
Confidence 9987663
No 175
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1.7e-08 Score=120.88 Aligned_cols=129 Identities=19% Similarity=0.228 Sum_probs=88.0
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC---------
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT--------- 768 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~--------- 768 (863)
.+.+||+|.+|++|+|++.+++.|..++. .++.+..+|||||+|+|||++|+++|+.+.+
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~ 74 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEA 74 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCC
Confidence 46789999999999999999999998873 1233456899999999999999999998753
Q ss_pred ----------------cEEEEecccccccccchhHHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 769 ----------------TFFNVCSSTLTSKYRGESEKLVRLLFEMARFY----APSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 769 ----------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~----~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
.++.+++.+- .....++.+.+.+... ...|+||||+|.+.. .
T Consensus 75 Cg~C~sC~~~~~~~~~n~~~ld~~~~------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~------------~ 136 (614)
T PRK14971 75 CNECESCVAFNEQRSYNIHELDAASN------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQ------------A 136 (614)
T ss_pred CCcchHHHHHhcCCCCceEEeccccc------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCH------------H
Confidence 2233332210 1123455555555422 345999999998833 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ 861 (863)
..+.||+.|+.. ...+++|.+|+.+..
T Consensus 137 a~naLLK~LEep------p~~tifIL~tt~~~k 163 (614)
T PRK14971 137 AFNAFLKTLEEP------PSYAIFILATTEKHK 163 (614)
T ss_pred HHHHHHHHHhCC------CCCeEEEEEeCCchh
Confidence 567888888543 233555555555444
No 176
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.84 E-value=1.2e-08 Score=118.74 Aligned_cols=172 Identities=13% Similarity=0.065 Sum_probs=104.4
Q ss_pred ceeEeeecccccccCcCCCccccccccccc-ccchhccc--ch------hhhccCcchhHHHHHHHhhhhhHHHHHHHHh
Q psy11009 77 GNLTFIFGSEFQSEPVVGSGTYLKHKSPIK-MNFLSLVL--PL------LAEEHGKLKFKEAITLALTVGSSLNLYRSIT 147 (863)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~--~~------l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~ 147 (863)
+.|+| |.||||||++|+.+++ +|+-.+.. |- +.-+.|.. .....+.-........+|.+.
T Consensus 38 ~~Lf~---------GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~--~dv~el~aa~~~gid~iR~i~ 106 (472)
T PRK14962 38 AYIFA---------GPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTF--MDVIELDAASNRGIDEIRKIR 106 (472)
T ss_pred EEEEE---------CCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCC--CccEEEeCcccCCHHHHHHHH
Confidence 45788 9999999999999999 44322210 00 00000000 000001000112234566776
Q ss_pred hcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceE
Q psy11009 148 NRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKR 227 (863)
Q Consensus 148 ~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~ 227 (863)
+...+.- ......||||||+|.+.. ...+.||..|+. +...+++|++||.|..|++++..|+. .
T Consensus 107 ~~~~~~p----~~~~~kVvIIDE~h~Lt~--------~a~~~LLk~LE~---p~~~vv~Ilattn~~kl~~~L~SR~~-v 170 (472)
T PRK14962 107 DAVGYRP----MEGKYKVYIIDEVHMLTK--------EAFNALLKTLEE---PPSHVVFVLATTNLEKVPPTIISRCQ-V 170 (472)
T ss_pred HHHhhCh----hcCCeEEEEEEChHHhHH--------HHHHHHHHHHHh---CCCcEEEEEEeCChHhhhHHHhcCcE-E
Confidence 6543322 123457999999998842 235667766654 23367888888889999999999995 7
Q ss_pred EEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHH
Q psy11009 228 IYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVC 276 (863)
Q Consensus 228 I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv 276 (863)
+.|.+|+..+...+++..+....+. ++-.++.|+..+.| +..++-+.+
T Consensus 171 v~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~L 219 (472)
T PRK14962 171 IEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDALTML 219 (472)
T ss_pred EEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHH
Confidence 9999999999999999888543332 23346778877653 333333333
No 177
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.83 E-value=7.3e-09 Score=120.12 Aligned_cols=107 Identities=21% Similarity=0.355 Sum_probs=67.9
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCccc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLC 814 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~ 814 (863)
..+.+++||||||||||+|++++|+++ +..++++++.++...+..........-|.. ....+++|+||||+.+.
T Consensus 146 ~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dlLiiDDi~~l~ 224 (450)
T PRK00149 146 KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKE-KYRSVDVLLIDDIQFLA 224 (450)
T ss_pred ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHH-HHhcCCEEEEehhhhhc
Confidence 345679999999999999999999997 567889999887655443322111112221 22357899999999986
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCC
Q psy11009 815 SRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861 (863)
Q Consensus 815 ~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ 861 (863)
+++ ..+.+|+..++.+...+ ..+||+++..|..
T Consensus 225 ~~~----------~~~~~l~~~~n~l~~~~----~~iiits~~~p~~ 257 (450)
T PRK00149 225 GKE----------RTQEEFFHTFNALHEAG----KQIVLTSDRPPKE 257 (450)
T ss_pred CCH----------HHHHHHHHHHHHHHHCC----CcEEEECCCCHHH
Confidence 532 12344555555443322 1355566555554
No 178
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.81 E-value=2.8e-08 Score=92.87 Aligned_cols=75 Identities=36% Similarity=0.580 Sum_probs=59.4
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCc---EEEEecccccccc--------------cchhHHHHHHHHHHHHhCCCeE
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTT---FFNVCSSTLTSKY--------------RGESEKLVRLLFEMARFYAPST 804 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~---~i~vs~s~l~~~~--------------~Ge~e~~ir~lf~~A~~~~p~I 804 (863)
...++|+||||||||++++.+|..+... ++.+++....... ........+.++..++...+.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 3589999999999999999999999775 8888887654321 1234556678888888777899
Q ss_pred EEEcCCCccccc
Q psy11009 805 IFIDEIDSLCSR 816 (863)
Q Consensus 805 LfIDEID~l~~~ 816 (863)
|||||++.+...
T Consensus 82 iiiDei~~~~~~ 93 (148)
T smart00382 82 LILDEITSLLDA 93 (148)
T ss_pred EEEECCcccCCH
Confidence 999999998653
No 179
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.81 E-value=1.6e-08 Score=116.00 Aligned_cols=170 Identities=16% Similarity=0.108 Sum_probs=106.3
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEec
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKM 170 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDE 170 (863)
|.||||||++|+.+++. +..+.+.... +......++.+++.+... ....+..||||||
T Consensus 43 GppGtGKTtLA~~ia~~----~~~~~~~l~a--------------~~~~~~~ir~ii~~~~~~----~~~g~~~vL~IDE 100 (413)
T PRK13342 43 GPPGTGKTTLARIIAGA----TDAPFEALSA--------------VTSGVKDLREVIEEARQR----RSAGRRTILFIDE 100 (413)
T ss_pred CCCCCCHHHHHHHHHHH----hCCCEEEEec--------------ccccHHHHHHHHHHHHHh----hhcCCceEEEEec
Confidence 99999999999999984 1111111111 011233456666543211 1234678999999
Q ss_pred ccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccC--CCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhcc
Q psy11009 171 FSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKG--IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKE 248 (863)
Q Consensus 171 iDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN--~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~ 248 (863)
+|.+.. ...+.|+..+.. ..+++|++|+ ....+++++++|+ ..+.++.|+.++...+++..+..
T Consensus 101 i~~l~~--------~~q~~LL~~le~-----~~iilI~att~n~~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~ 166 (413)
T PRK13342 101 IHRFNK--------AQQDALLPHVED-----GTITLIGATTENPSFEVNPALLSRA-QVFELKPLSEEDIEQLLKRALED 166 (413)
T ss_pred hhhhCH--------HHHHHHHHHhhc-----CcEEEEEeCCCChhhhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHH
Confidence 998742 234556666542 2577777653 3568999999999 78999999999999999988754
Q ss_pred C-----CCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHh
Q psy11009 249 V-----KVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARC 320 (863)
Q Consensus 249 ~-----~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v 320 (863)
. .+. +-.++.|+..+.| ....+.+++..++.. ...|+.+++..++...
T Consensus 167 ~~~~~i~i~-~~al~~l~~~s~G-d~R~aln~Le~~~~~----------------------~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 167 KERGLVELD-DEALDALARLANG-DARRALNLLELAALG----------------------VDSITLELLEEALQKR 219 (413)
T ss_pred hhcCCCCCC-HHHHHHHHHhCCC-CHHHHHHHHHHHHHc----------------------cCCCCHHHHHHHHhhh
Confidence 2 222 2235667777643 444444444443221 1257888888877654
No 180
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.81 E-value=2.3e-08 Score=120.02 Aligned_cols=72 Identities=26% Similarity=0.360 Sum_probs=57.5
Q ss_pred HHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh--------
Q psy11009 695 LERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-------- 766 (863)
Q Consensus 695 ~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-------- 766 (863)
+.+.+.+.+++.+|++++|++.+.+.+...+..+ .+.+++|+||||||||++|+++++..
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~ 207 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPF 207 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcc
Confidence 4455667888999999999999999887765311 23479999999999999999998665
Q ss_pred --CCcEEEEecccc
Q psy11009 767 --GTTFFNVCSSTL 778 (863)
Q Consensus 767 --~~~~i~vs~s~l 778 (863)
+.+|+.+++..+
T Consensus 208 ~~~~~fv~i~~~~l 221 (615)
T TIGR02903 208 AEDAPFVEVDGTTL 221 (615)
T ss_pred cCCCCeEEEechhc
Confidence 457899988765
No 181
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.79 E-value=1.5e-08 Score=115.94 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=67.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEecccccccccchhHH-HHHHHHHHHHhCCCeEEEEcCCCcc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVCSSTLTSKYRGESEK-LVRLLFEMARFYAPSTIFIDEIDSL 813 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs~s~l~~~~~Ge~e~-~ir~lf~~A~~~~p~ILfIDEID~l 813 (863)
..+.+++||||||||||+|++++++++ +..++++++.++...+...... ....+.+.. ..+++|+|||++.+
T Consensus 134 ~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dlLiiDDi~~l 211 (405)
T TIGR00362 134 KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEKY--RSVDLLLIDDIQFL 211 (405)
T ss_pred ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH--HhCCEEEEehhhhh
Confidence 345679999999999999999999987 5789999988776544322211 111111211 23679999999998
Q ss_pred cccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 814 CSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 814 ~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.+++ ..+.+|+..++.+...+ ..+||+++..|..+
T Consensus 212 ~~~~----------~~~~~l~~~~n~~~~~~----~~iiits~~~p~~l 246 (405)
T TIGR00362 212 AGKE----------RTQEEFFHTFNALHENG----KQIVLTSDRPPKEL 246 (405)
T ss_pred cCCH----------HHHHHHHHHHHHHHHCC----CCEEEecCCCHHHH
Confidence 6532 12334555554443221 23566666666544
No 182
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=98.79 E-value=1.2e-08 Score=116.40 Aligned_cols=182 Identities=15% Similarity=0.139 Sum_probs=118.2
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHH-HHHHHHhhcccceeeeccCCCCcEEEEEe
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSL-NLYRSITNRGFYIEDYEVSPPGPTLAVAK 169 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se-~~~r~i~~~~~~l~~~~~~~~~P~IlFiD 169 (863)
|+||||||++|+++++. +..|....+...+ ..+.|||..+ ......+... .|......|+|||||
T Consensus 123 GP~GsGKT~lAraLA~~----l~~pf~~~da~~L------~~~gyvG~d~e~~L~~~~~~~----~~~l~~a~~gIV~lD 188 (413)
T TIGR00382 123 GPTGSGKTLLAQTLARI----LNVPFAIADATTL------TEAGYVGEDVENILLKLLQAA----DYDVEKAQKGIIYID 188 (413)
T ss_pred CCCCcCHHHHHHHHHHh----cCCCeEEechhhc------cccccccccHHHHHHHHHHhC----cccHHhcccceEEec
Confidence 99999999999999984 3445443332111 1245889853 3344444332 234455678899999
Q ss_pred cccccccccccc-----hh-HhHHHHHHHHhhccCC----------CCCCeEEEEccCCCC-------------------
Q psy11009 170 MFSSLAVQKLLR-----GS-KTFRTLCIHKYRLLTF----------PSTPVQYSIQKGIPW------------------- 214 (863)
Q Consensus 170 EiDal~~~R~~~-----~~-~~v~n~lL~~ld~~~~----------~~~~VivIaATN~p~------------------- 214 (863)
|+|.+..++.+. .+ ..+.+.||..|+|... +..+.++|.|+|-..
T Consensus 189 EIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~ 268 (413)
T TIGR00382 189 EIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGK 268 (413)
T ss_pred ccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhh
Confidence 999999866431 11 2688889988865431 122567888888610
Q ss_pred -------------------------------CccHHHhhccceEEEecCCCHHHHHHHHHHH----hcc----C---CCC
Q psy11009 215 -------------------------------DIDEALRRRLEKRIYIPLPSKAGREALLKIN----LKE----V---KVD 252 (863)
Q Consensus 215 -------------------------------~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~----l~~----~---~l~ 252 (863)
-+-|+|+-|+|..++|..-+.+...+|+... +++ + .+.
T Consensus 269 ~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~ 348 (413)
T TIGR00382 269 SSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVE 348 (413)
T ss_pred ccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeE
Confidence 0347777799999999999999999998763 221 1 111
Q ss_pred ---CcccHHHHhhhC--CCCCHHHHHHHHHHHHHHHHHh
Q psy11009 253 ---PAVDLTHIASQL--DGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 253 ---~dvdl~~LA~~T--eG~SGADI~~lv~~Aal~air~ 286 (863)
.+--++.||+.. ..+-..-|+.++....+.++-+
T Consensus 349 L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e 387 (413)
T TIGR00382 349 LDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFD 387 (413)
T ss_pred EEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhh
Confidence 122256777763 4566778888888776666555
No 183
>KOG0745|consensus
Probab=98.78 E-value=1.9e-08 Score=112.11 Aligned_cols=98 Identities=31% Similarity=0.533 Sum_probs=75.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc-ccccchh-HHHHHHHHHHHH----hCCCeEEEEcCCCccccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT-SKYRGES-EKLVRLLFEMAR----FYAPSTIFIDEIDSLCSR 816 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~-~~~~Ge~-e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~ 816 (863)
.+|||.||+|+|||+||+.+|+.+++||.-.+|.+|. ..|+|+. +..+..+...|. ....+|+||||+|.|...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 4899999999999999999999999999999999886 4789875 555666776654 234689999999999743
Q ss_pred CCC-CchhhH-HHHHHHHHHHHHhcC
Q psy11009 817 RGS-ESEHEA-SRRVKSELLVQMDGL 840 (863)
Q Consensus 817 R~~-~~~~e~-~~rv~~~LL~~lD~l 840 (863)
-.+ ....++ ..-++..||+.++|-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGt 332 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGT 332 (564)
T ss_pred CccccccccccchhHHHHHHHHhccc
Confidence 221 111122 235888899999863
No 184
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.77 E-value=2.9e-08 Score=108.96 Aligned_cols=123 Identities=27% Similarity=0.278 Sum_probs=86.5
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC----------------------
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG---------------------- 767 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~---------------------- 767 (863)
+++|.+.+...+..++. ..++.+..+||+||||||||++|.++|+++.
T Consensus 2 ~~~~~~~~~~~l~~~~~----------~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~ 71 (325)
T COG0470 2 ELVPWQEAVKRLLVQAL----------ESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAG 71 (325)
T ss_pred CcccchhHHHHHHHHHH----------hcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhc
Confidence 57778888887777663 1112222599999999999999999999986
Q ss_pred --CcEEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC
Q psy11009 768 --TTFFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS 841 (863)
Q Consensus 768 --~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~ 841 (863)
..++++++++....- -....++.+-..... ...-|++|||+|.+.. ...+.|++.|+
T Consensus 72 ~~~d~lel~~s~~~~~~--i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~------------~A~nallk~lE--- 134 (325)
T COG0470 72 NHPDFLELNPSDLRKID--IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE------------DAANALLKTLE--- 134 (325)
T ss_pred CCCceEEecccccCCCc--chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH------------HHHHHHHHHhc---
Confidence 578888888765431 122334444443332 3457999999999855 35678888873
Q ss_pred CCCCCCCceEEEEecCCCCCC
Q psy11009 842 SAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 842 ~~~~~~~~VvVIaTTN~P~~I 862 (863)
.+.....+|.+||.|+.|
T Consensus 135 ---ep~~~~~~il~~n~~~~i 152 (325)
T COG0470 135 ---EPPKNTRFILITNDPSKI 152 (325)
T ss_pred ---cCCCCeEEEEEcCChhhc
Confidence 445567899999998865
No 185
>KOG1051|consensus
Probab=98.77 E-value=3.1e-08 Score=120.57 Aligned_cols=160 Identities=23% Similarity=0.249 Sum_probs=110.7
Q ss_pred hccccCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC--CCCceEEEECCCCCChHH
Q psy11009 680 RRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR--RPWKGVLMVGPPGTGKTM 757 (863)
Q Consensus 680 ~k~~~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~--~p~kgvLL~GPPGtGKT~ 757 (863)
..+.++|.+.+.....+..........--..|+|++++...|.++|.... .+.. .|.-.+||.||.|+|||-
T Consensus 533 ~~s~~tgip~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr------~gl~~~~~~awflflGpdgvGKt~ 606 (898)
T KOG1051|consen 533 VVSRWTGIPVDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSR------AGLKDPNPDAWFLFLGPDGVGKTE 606 (898)
T ss_pred hhhhhcCCchhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhh------cccCCCCCCeEEEEECCCchhHHH
Confidence 33445555444433322222222223333559999999999999995221 1223 356689999999999999
Q ss_pred HHHHHHHHh---CCcEEEEecccc---------cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhH
Q psy11009 758 LAKAVATEC---GTTFFNVCSSTL---------TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEA 825 (863)
Q Consensus 758 LAraIA~el---~~~~i~vs~s~l---------~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~ 825 (863)
||+++|..+ .-.++.++.+++ ..+|+|..+. ..+.+..+....+||+|||||...+
T Consensus 607 lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~g--g~LteavrrrP~sVVLfdeIEkAh~---------- 674 (898)
T KOG1051|consen 607 LAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEG--GQLTEAVKRRPYSVVLFEEIEKAHP---------- 674 (898)
T ss_pred HHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhH--HHHHHHHhcCCceEEEEechhhcCH----------
Confidence 999999998 357889988852 2346665554 5778888888899999999987644
Q ss_pred HHHHHHHHHHHHhcCCCCCCC-----CCceEEEEecCCC
Q psy11009 826 SRRVKSELLVQMDGLSSAEDS-----SKVVMVLAATNFP 859 (863)
Q Consensus 826 ~~rv~~~LL~~lD~l~~~~~~-----~~~VvVIaTTN~P 859 (863)
.+++-|++.+|...-.+.+ -++++||+|+|.-
T Consensus 675 --~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~ 711 (898)
T KOG1051|consen 675 --DVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVG 711 (898)
T ss_pred --HHHHHHHHHHhcCccccCCCcEeeccceEEEEecccc
Confidence 4788888888865544333 3568999999863
No 186
>PRK06893 DNA replication initiation factor; Validated
Probab=98.77 E-value=4.9e-08 Score=103.36 Aligned_cols=127 Identities=15% Similarity=0.184 Sum_probs=70.1
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccc
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLT 779 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~ 779 (863)
.++.+|++++|.+... .+.. +. +.+... ....++|+||||||||+|++++|+++ +....+++.....
T Consensus 10 ~~~~~fd~f~~~~~~~-~~~~-~~------~~~~~~--~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LLDS-LR------KNFIDL--QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HHHH-HH------HHhhcc--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4567899988665432 1111 11 111111 12368999999999999999999986 3455555543211
Q ss_pred ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 780 SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
. ....+++. .....+|+|||++.+.+++ .. ...|+..++.... .++.++|++++..|
T Consensus 80 ~--------~~~~~~~~--~~~~dlLilDDi~~~~~~~------~~----~~~l~~l~n~~~~---~~~~illits~~~p 136 (229)
T PRK06893 80 Y--------FSPAVLEN--LEQQDLVCLDDLQAVIGNE------EW----ELAIFDLFNRIKE---QGKTLLLISADCSP 136 (229)
T ss_pred h--------hhHHHHhh--cccCCEEEEeChhhhcCCh------HH----HHHHHHHHHHHHH---cCCcEEEEeCCCCh
Confidence 1 11122222 2346799999999986532 11 1234444443322 12335566666666
Q ss_pred CCC
Q psy11009 860 WEG 862 (863)
Q Consensus 860 ~~I 862 (863)
..+
T Consensus 137 ~~l 139 (229)
T PRK06893 137 HAL 139 (229)
T ss_pred HHc
Confidence 644
No 187
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.77 E-value=1.7e-08 Score=116.76 Aligned_cols=74 Identities=15% Similarity=0.248 Sum_probs=51.7
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEecccccccccchhH-HHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVCSSTLTSKYRGESE-KLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs~s~l~~~~~Ge~e-~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
+.+++||||||||||+|++++|+++ +..++++++.++...+..... ..... |.......+.+|+|||++.+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~~~-f~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNE-FREKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccHHH-HHHHHHhcCCEEEEechhhhcC
Confidence 4579999999999999999999986 467889998876654432111 11111 2221123588999999998865
Q ss_pred c
Q psy11009 816 R 816 (863)
Q Consensus 816 ~ 816 (863)
+
T Consensus 209 ~ 209 (440)
T PRK14088 209 K 209 (440)
T ss_pred c
Confidence 3
No 188
>PRK12377 putative replication protein; Provisional
Probab=98.75 E-value=6.5e-08 Score=103.69 Aligned_cols=104 Identities=15% Similarity=0.187 Sum_probs=65.2
Q ss_pred hhhcCCCCcccccc----chHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEE
Q psy11009 699 MVQKNPNIRWDDIA----ELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFF 771 (863)
Q Consensus 699 ~~~k~p~~~~~dLi----Gl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i 771 (863)
+...+...+|+++. |...+......++. -+ .....+++|+||||||||+||.|||+++ +..++
T Consensus 64 i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~-------~~---~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~ 133 (248)
T PRK12377 64 IQPLHRKCSFANYQVQNDGQRYALSQAKSIAD-------EL---MTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVI 133 (248)
T ss_pred CCcccccCCcCCcccCChhHHHHHHHHHHHHH-------HH---HhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 34456677888875 33334444444331 11 1123689999999999999999999998 67888
Q ss_pred EEecccccccccchhH--HHHHHHHHHHHhCCCeEEEEcCCCccc
Q psy11009 772 NVCSSTLTSKYRGESE--KLVRLLFEMARFYAPSTIFIDEIDSLC 814 (863)
Q Consensus 772 ~vs~s~l~~~~~Ge~e--~~ir~lf~~A~~~~p~ILfIDEID~l~ 814 (863)
.++..++......... .....++.. .....+|+|||++...
T Consensus 134 ~i~~~~l~~~l~~~~~~~~~~~~~l~~--l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 134 VVTVPDVMSRLHESYDNGQSGEKFLQE--LCKVDLLVLDEIGIQR 176 (248)
T ss_pred EEEHHHHHHHHHHHHhccchHHHHHHH--hcCCCEEEEcCCCCCC
Confidence 8888877654321100 001122222 2467899999997663
No 189
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.74 E-value=5.2e-08 Score=105.22 Aligned_cols=103 Identities=25% Similarity=0.226 Sum_probs=65.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc------ccccccchhHHHH-H--------------------HHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST------LTSKYRGESEKLV-R--------------------LLFE 795 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~------l~~~~~Ge~e~~i-r--------------------~lf~ 795 (863)
+++||.||||||||++|+++|..+|.+++.+++.. +.+.+.+.....+ . .++.
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 57999999999999999999999999999997653 3333322111110 0 1111
Q ss_pred HHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC----CCCC------CCCceEEEEecCCC
Q psy11009 796 MARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS----SAED------SSKVVMVLAATNFP 859 (863)
Q Consensus 796 ~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~----~~~~------~~~~VvVIaTTN~P 859 (863)
|. ..+.+|+||||+.+.+ .+++.|+..|+.-. .... ....+.||+|+|.+
T Consensus 102 -A~-~~g~~lllDEi~r~~~------------~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~ 161 (262)
T TIGR02640 102 -AV-REGFTLVYDEFTRSKP------------ETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPV 161 (262)
T ss_pred -HH-HcCCEEEEcchhhCCH------------HHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCc
Confidence 11 2357999999988633 36677777775311 0000 11246789999975
No 190
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.73 E-value=8.8e-08 Score=110.86 Aligned_cols=136 Identities=12% Similarity=0.103 Sum_probs=86.8
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC---CccHHHhhccc--eEEEecCCCHH
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW---DIDEALRRRLE--KRIYIPLPSKA 236 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~---~LD~AllRRFD--~~I~i~lPd~~ 236 (863)
.+.||+|||++.+..+.. ....|+..++.+...+ ..+|+++++.|. .+++.+..||. ..+.+..|+.+
T Consensus 202 ~~dvLiIDDiq~l~~k~~------~qeelf~l~N~l~~~~-k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e 274 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGA------TQEEFFHTFNSLHTEG-KLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKE 274 (445)
T ss_pred cCCEEEEcchhhhcCChh------hHHHHHHHHHHHHHCC-CcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHH
Confidence 456999999999865321 1223333333222222 345555555554 57889999997 78888999999
Q ss_pred HHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHH
Q psy11009 237 GREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEE 315 (863)
Q Consensus 237 ~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~ 315 (863)
.|..||+..+....+. ++--++.||....+ +..+|++.+...+.......+. ..+||.++..+
T Consensus 275 ~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~---------------~~~i~~~~~~~ 338 (445)
T PRK12422 275 GLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLS---------------HQLLYVDDIKA 338 (445)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhh---------------CCCCCHHHHHH
Confidence 9999999999655433 22335667776653 5667777666654333222211 34789999888
Q ss_pred HHHHh
Q psy11009 316 ALARC 320 (863)
Q Consensus 316 AL~~v 320 (863)
++...
T Consensus 339 ~l~~~ 343 (445)
T PRK12422 339 LLHDV 343 (445)
T ss_pred HHHHh
Confidence 88764
No 191
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.73 E-value=7.8e-08 Score=112.58 Aligned_cols=173 Identities=16% Similarity=0.108 Sum_probs=114.6
Q ss_pred CcCCCccccccccccc-ccchhcc--cchhhhccCcchhHHHHHH--------Hhhh--hhHHHHHHHHhhcccceeeec
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLV--LPLLAEEHGKLKFKEAITL--------ALTV--GSSLNLYRSITNRGFYIEDYE 157 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~--~~~l~~~~gk~s~~e~~~~--------~~~v--g~se~~~r~i~~~~~~l~~~~ 157 (863)
|.||||||++|+.+++ +|+.... .|.. .--|.+ -.|-... .+.. ..+...+|.+++.+.+..
T Consensus 50 Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~-~~C~~C-~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P--- 124 (507)
T PRK06645 50 GIRGVGKTTSARIIAKAVNCSALITENTTI-KTCEQC-TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKP--- 124 (507)
T ss_pred CCCCCCHHHHHHHHHHHhcCccccccCcCc-CCCCCC-hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhcc---
Confidence 9999999999999999 5543221 1100 000111 0111110 0000 123566788887654443
Q ss_pred cCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHH
Q psy11009 158 VSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAG 237 (863)
Q Consensus 158 ~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~ 237 (863)
......|++|||+|.+- ....+.||.-|.. +...+++|.+|+.++.|.+++..|. .+++|..++.++
T Consensus 125 -~~~~~KVvIIDEa~~Ls--------~~a~naLLk~LEe---pp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~e 191 (507)
T PRK06645 125 -LQGKHKIFIIDEVHMLS--------KGAFNALLKTLEE---PPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEE 191 (507)
T ss_pred -ccCCcEEEEEEChhhcC--------HHHHHHHHHHHhh---cCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHH
Confidence 22355699999999884 2345667666653 3347888888999999999999999 579999999999
Q ss_pred HHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHH
Q psy11009 238 REALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMM 282 (863)
Q Consensus 238 R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~ 282 (863)
...+++..+++.... .+-.++.|+..+.| +..++.+++..+...
T Consensus 192 l~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~ 236 (507)
T PRK06645 192 IFKLLEYITKQENLKTDIEALRIIAYKSEG-SARDAVSILDQAASM 236 (507)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHh
Confidence 999999999655443 23347789998876 888888887776443
No 192
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.71 E-value=5.8e-08 Score=101.40 Aligned_cols=89 Identities=13% Similarity=0.223 Sum_probs=63.6
Q ss_pred CCcccccc--chHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccc
Q psy11009 705 NIRWDDIA--ELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLT 779 (863)
Q Consensus 705 ~~~~~dLi--Gl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~ 779 (863)
+.+|++++ +...+.+.+.+++. .....+++|+||||||||++|++++.++ +.+++++++..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 34677775 46667777777642 2234689999999999999999999887 5788899988875
Q ss_pred ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 780 SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
... ..++... ....+|+|||+|.+..
T Consensus 79 ~~~--------~~~~~~~--~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 79 QAD--------PEVLEGL--EQADLVCLDDVEAIAG 104 (226)
T ss_pred HhH--------HHHHhhc--ccCCEEEEeChhhhcC
Confidence 332 1222222 2356999999998854
No 193
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.71 E-value=9.6e-08 Score=101.56 Aligned_cols=109 Identities=11% Similarity=0.051 Sum_probs=72.0
Q ss_pred EEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCC---ccHHHhhccc--eEEEecCCCHHHH
Q psy11009 164 TLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWD---IDEALRRRLE--KRIYIPLPSKAGR 238 (863)
Q Consensus 164 ~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~---LD~AllRRFD--~~I~i~lPd~~~R 238 (863)
.+|||||++.+..+. +....|...++.....+..-+++.+++.|.. +.|.+..||. ..+.+..||.++|
T Consensus 99 dlliiDdi~~~~~~~------~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~ 172 (235)
T PRK08084 99 SLVCIDNIECIAGDE------LWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEK 172 (235)
T ss_pred CEEEEeChhhhcCCH------HHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHH
Confidence 389999999886432 1112222223222222212355656666665 5789999998 8999999999999
Q ss_pred HHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 239 EALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 239 ~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.++++.......+. ++--++.|++..+| +...+..++...
T Consensus 173 ~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l 213 (235)
T PRK08084 173 LQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQL 213 (235)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHH
Confidence 99999866433332 23337889998875 888888888764
No 194
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.71 E-value=2.7e-08 Score=114.41 Aligned_cols=131 Identities=27% Similarity=0.365 Sum_probs=95.6
Q ss_pred CCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccc
Q psy11009 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTS 780 (863)
Q Consensus 704 p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~ 780 (863)
-.-+|++|+|.+....++.+.+ +......-.|||.|.+||||..+|++|-+.. +.||+.+||..+-.
T Consensus 240 a~y~f~~Iig~S~~m~~~~~~a----------kr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe 309 (560)
T COG3829 240 AKYTFDDIIGESPAMLRVLELA----------KRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPE 309 (560)
T ss_pred cccchhhhccCCHHHHHHHHHH----------HhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCH
Confidence 3457999999999988888765 3344455689999999999999999997765 78999999976543
Q ss_pred cc-----cc--------hhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh-----cCCC
Q psy11009 781 KY-----RG--------ESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD-----GLSS 842 (863)
Q Consensus 781 ~~-----~G--------e~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD-----~l~~ 842 (863)
.. +| ....-..-+|+.|. .+.||+|||..+ +..++..||..++ .+++
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~GlfE~A~---gGTLFLDEIgem------------pl~LQaKLLRVLQEkei~rvG~ 374 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPGLFELAN---GGTLFLDEIGEM------------PLPLQAKLLRVLQEKEIERVGG 374 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCcceeecc---CCeEEehhhccC------------CHHHHHHHHHHHhhceEEecCC
Confidence 21 11 11111223445444 679999999665 3457888888776 5666
Q ss_pred CCCCCCceEEEEecCCC
Q psy11009 843 AEDSSKVVMVLAATNFP 859 (863)
Q Consensus 843 ~~~~~~~VvVIaTTN~P 859 (863)
.....-.|.||||||+.
T Consensus 375 t~~~~vDVRIIAATN~n 391 (560)
T COG3829 375 TKPIPVDVRIIAATNRN 391 (560)
T ss_pred CCceeeEEEEEeccCcC
Confidence 66666779999999974
No 195
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.70 E-value=1.2e-07 Score=112.21 Aligned_cols=133 Identities=16% Similarity=0.162 Sum_probs=87.4
Q ss_pred cEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCC----CCccHHHhhccceEE--EecCCCHH
Q psy11009 163 PTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIP----WDIDEALRRRLEKRI--YIPLPSKA 236 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p----~~LD~AllRRFD~~I--~i~lPd~~ 236 (863)
+.||+|||++.+..+... ...|+..++.+...+ +-+|| |+|++ ..|++.|..||..-+ .|..||.+
T Consensus 378 ~DLLlIDDIq~l~gke~t------qeeLF~l~N~l~e~g-k~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~E 449 (617)
T PRK14086 378 MDILLVDDIQFLEDKEST------QEEFFHTFNTLHNAN-KQIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELE 449 (617)
T ss_pred CCEEEEehhccccCCHHH------HHHHHHHHHHHHhcC-CCEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHH
Confidence 579999999999764421 233333343333322 23444 66664 367888999996555 88899999
Q ss_pred HHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHH
Q psy11009 237 GREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEE 315 (863)
Q Consensus 237 ~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~ 315 (863)
.|.+||+..+....+. ++--++.||....+ +..+|+.++......+... ..+||.+....
T Consensus 450 tR~aIL~kka~~r~l~l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~------------------~~~itl~la~~ 510 (617)
T PRK14086 450 TRIAILRKKAVQEQLNAPPEVLEFIASRISR-NIRELEGALIRVTAFASLN------------------RQPVDLGLTEI 510 (617)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh------------------CCCCCHHHHHH
Confidence 9999999999654444 23336778888763 7888888887654443332 33677777777
Q ss_pred HHHHhcC
Q psy11009 316 ALARCNK 322 (863)
Q Consensus 316 AL~~v~p 322 (863)
.|..+.+
T Consensus 511 vL~~~~~ 517 (617)
T PRK14086 511 VLRDLIP 517 (617)
T ss_pred HHHHhhc
Confidence 7765533
No 196
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.68 E-value=1.3e-08 Score=105.66 Aligned_cols=46 Identities=43% Similarity=0.657 Sum_probs=37.3
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.|+||+|++.+|+.+.-+.. + ..++||+||||||||++|+++...+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa------------G--~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA------------G--GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH------------C--C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred ChhhhcCcHHHHHHHHHHHc------------C--CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999987663 2 2599999999999999999999776
No 197
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.68 E-value=1.5e-07 Score=98.37 Aligned_cols=168 Identities=12% Similarity=0.011 Sum_probs=97.9
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccccee
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIE 154 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~ 154 (863)
...+++| |.||||||++|+.+++.-. .-..+.++. .|+.... ....+++.
T Consensus 38 ~~~lll~---------G~~G~GKT~la~~~~~~~~-~~~~~~~~i-------~~~~~~~--------~~~~~~~~----- 87 (226)
T TIGR03420 38 DRFLYLW---------GESGSGKSHLLQAACAAAE-ERGKSAIYL-------PLAELAQ--------ADPEVLEG----- 87 (226)
T ss_pred CCeEEEE---------CCCCCCHHHHHHHHHHHHH-hcCCcEEEE-------eHHHHHH--------hHHHHHhh-----
Confidence 3456777 9999999999999987510 000111111 1111111 11233321
Q ss_pred eeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCcc---HHHhhcc--ceEEE
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDID---EALRRRL--EKRIY 229 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD---~AllRRF--D~~I~ 229 (863)
..++.+|+|||+|.+.... .....+...++...... ..+|+.++..+..++ +.+.+|| ...|.
T Consensus 88 -----~~~~~lLvIDdi~~l~~~~------~~~~~L~~~l~~~~~~~-~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~ 155 (226)
T TIGR03420 88 -----LEQADLVCLDDVEAIAGQP------EWQEALFHLYNRVREAG-GRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQ 155 (226)
T ss_pred -----cccCCEEEEeChhhhcCCh------HHHHHHHHHHHHHHHcC-CeEEEECCCChHHCCcccHHHHHHHhcCeeEe
Confidence 1223599999999885421 11233333333322222 345554444554433 7788787 48999
Q ss_pred ecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy11009 230 IPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMR 285 (863)
Q Consensus 230 i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air 285 (863)
++.|+..++..+++.++.+..+. ++--+..|+..+ +-+..++.+++..+...+.+
T Consensus 156 l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~-~gn~r~L~~~l~~~~~~~~~ 211 (226)
T TIGR03420 156 LPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHG-SRDMGSLMALLDALDRASLA 211 (226)
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999887543332 223367788854 45889999999887544433
No 198
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.4e-07 Score=113.65 Aligned_cols=118 Identities=24% Similarity=0.398 Sum_probs=100.1
Q ss_pred HHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---
Q psy11009 690 DLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC--- 766 (863)
Q Consensus 690 ~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el--- 766 (863)
...+.....+++.-+.-.++-++|.++-++++.+.+. ++...+-+|.|+||+|||.++..+|...
T Consensus 151 ~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g 218 (786)
T COG0542 151 DALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNG 218 (786)
T ss_pred hhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcC
Confidence 4566667778888889999999999999888888663 3344688999999999999999999876
Q ss_pred -------CCcEEEEecccccc--cccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC
Q psy11009 767 -------GTTFFNVCSSTLTS--KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGS 819 (863)
Q Consensus 767 -------~~~~i~vs~s~l~~--~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~ 819 (863)
+..++.++...+.. +|.|+.|.+++.+.+......+.|||||||+.|.+..+.
T Consensus 219 ~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~ 280 (786)
T COG0542 219 DVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGAT 280 (786)
T ss_pred CCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcc
Confidence 66788888887764 799999999999999999888999999999999886544
No 199
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.68 E-value=9.5e-08 Score=100.48 Aligned_cols=87 Identities=17% Similarity=0.235 Sum_probs=60.7
Q ss_pred CCCCcccccc--chHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccc
Q psy11009 703 NPNIRWDDIA--ELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSST 777 (863)
Q Consensus 703 ~p~~~~~dLi--Gl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~ 777 (863)
.++.+|++++ +...+...+..++. . .....+++|+||||||||+||+++++++ +.+++++++.+
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~----------~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA----------G-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh----------c-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 3456788876 34556666665442 1 1234689999999999999999999886 67888888776
Q ss_pred ccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCccc
Q psy11009 778 LTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLC 814 (863)
Q Consensus 778 l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~ 814 (863)
+... +. ......+|||||+|.+.
T Consensus 81 ~~~~------------~~--~~~~~~~liiDdi~~l~ 103 (227)
T PRK08903 81 PLLA------------FD--FDPEAELYAVDDVERLD 103 (227)
T ss_pred hHHH------------Hh--hcccCCEEEEeChhhcC
Confidence 5321 11 12346799999999873
No 200
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.67 E-value=5.4e-08 Score=112.56 Aligned_cols=132 Identities=11% Similarity=0.054 Sum_probs=88.9
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCc---cHHHhhccc--eEEEecCCCHH
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDI---DEALRRRLE--KRIYIPLPSKA 236 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~L---D~AllRRFD--~~I~i~lPd~~ 236 (863)
.|.||+|||++.+..+.. ....|+..++.+...+ ..+||++.+.|..+ ++.+..||. ..+.|.+||.+
T Consensus 194 ~~dvLlIDDi~~l~~~~~------~q~elf~~~n~l~~~~-k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e 266 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTG------VQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_pred cCCEEEEechhhhcCcHH------HHHHHHHHHHHHHHcC-CeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHH
Confidence 577999999999865421 2233444444333332 45666666677764 456666885 57788999999
Q ss_pred HHHHHHHHHhcc--CCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHH
Q psy11009 237 GREALLKINLKE--VKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFE 314 (863)
Q Consensus 237 ~R~~IL~~~l~~--~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~ 314 (863)
.|.+|++..+.. +.+.+ --++.||....| +..+|+.++......+... ..+||.+...
T Consensus 267 ~r~~IL~~~~~~~~~~l~~-ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~------------------~~~it~~~a~ 326 (440)
T PRK14088 267 TRKKIARKMLEIEHGELPE-EVLNFVAENVDD-NLRRLRGAIIKLLVYKETT------------------GEEVDLKEAI 326 (440)
T ss_pred HHHHHHHHHHHhcCCCCCH-HHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh------------------CCCCCHHHHH
Confidence 999999999854 33433 337888888875 7888888887654444332 3478888887
Q ss_pred HHHHHh
Q psy11009 315 EALARC 320 (863)
Q Consensus 315 ~AL~~v 320 (863)
++|...
T Consensus 327 ~~L~~~ 332 (440)
T PRK14088 327 LLLKDF 332 (440)
T ss_pred HHHHHH
Confidence 777654
No 201
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.67 E-value=1.2e-07 Score=99.78 Aligned_cols=135 Identities=21% Similarity=0.329 Sum_probs=80.5
Q ss_pred CCCCcccccc-c--hHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEe
Q psy11009 703 NPNIRWDDIA-E--LTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVC 774 (863)
Q Consensus 703 ~p~~~~~dLi-G--l~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs 774 (863)
+|.-+|++++ | +..+...+.... ...+.....++||||+|+|||+|.+|+++++ +..+++++
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia----------~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~ 71 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIA----------ENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS 71 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHH----------HSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHH----------hcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec
Confidence 4567888875 4 344444444322 2233344579999999999999999999875 67899999
Q ss_pred cccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q psy11009 775 SSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLA 854 (863)
Q Consensus 775 ~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIa 854 (863)
+.++...+..........-|. .......+|+||+++.+..+ ...+.+|...++.+...+ +.+|++
T Consensus 72 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~DlL~iDDi~~l~~~----------~~~q~~lf~l~n~~~~~~----k~li~t 136 (219)
T PF00308_consen 72 AEEFIREFADALRDGEIEEFK-DRLRSADLLIIDDIQFLAGK----------QRTQEELFHLFNRLIESG----KQLILT 136 (219)
T ss_dssp HHHHHHHHHHHHHTTSHHHHH-HHHCTSSEEEEETGGGGTTH----------HHHHHHHHHHHHHHHHTT----SEEEEE
T ss_pred HHHHHHHHHHHHHcccchhhh-hhhhcCCEEEEecchhhcCc----------hHHHHHHHHHHHHHHhhC----CeEEEE
Confidence 888765543322111011121 12235789999999998542 234555555555554332 245666
Q ss_pred ecCCCCCC
Q psy11009 855 ATNFPWEG 862 (863)
Q Consensus 855 TTN~P~~I 862 (863)
+...|..+
T Consensus 137 s~~~P~~l 144 (219)
T PF00308_consen 137 SDRPPSEL 144 (219)
T ss_dssp ESS-TTTT
T ss_pred eCCCCccc
Confidence 66777665
No 202
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.67 E-value=6e-08 Score=110.50 Aligned_cols=173 Identities=14% Similarity=0.096 Sum_probs=107.7
Q ss_pred eecceeEeeecccccccCcCCCcccccccccccc-cchhcc-cc---------hhhhccCcchhHHHHHHHhhhhhHHHH
Q psy11009 74 IRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM-NFLSLV-LP---------LLAEEHGKLKFKEAITLALTVGSSLNL 142 (863)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~-~~---------~l~~~~gk~s~~e~~~~~~~vg~se~~ 142 (863)
..-+.|++ |.||+|||++|+..++. |+-.-. .| .....|-.+-+.+.. ...+ ....
T Consensus 35 l~ha~Lf~---------Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~--~~~i--~i~~ 101 (394)
T PRK07940 35 MTHAWLFT---------GPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPE--GLSI--GVDE 101 (394)
T ss_pred CCeEEEEE---------CCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccc--cccC--CHHH
Confidence 34467777 99999999999999984 221100 00 000000000010000 0111 1234
Q ss_pred HHHHhhcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhh
Q psy11009 143 YRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRR 222 (863)
Q Consensus 143 ~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllR 222 (863)
+|.+++...+.. ...+..|+||||+|.+-. ...|.||..|+. +..++++|.+|+.++.|+|++++
T Consensus 102 iR~l~~~~~~~p----~~~~~kViiIDead~m~~--------~aanaLLk~LEe---p~~~~~fIL~a~~~~~llpTIrS 166 (394)
T PRK07940 102 VRELVTIAARRP----STGRWRIVVIEDADRLTE--------RAANALLKAVEE---PPPRTVWLLCAPSPEDVLPTIRS 166 (394)
T ss_pred HHHHHHHHHhCc----ccCCcEEEEEechhhcCH--------HHHHHHHHHhhc---CCCCCeEEEEECChHHChHHHHh
Confidence 788887543222 345678999999999842 335778887753 22245555556669999999999
Q ss_pred ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 223 RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 223 RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
|. ..|+|++|+.++...+|.... ... ......++..+.|..|.-+.-+..+.
T Consensus 167 Rc-~~i~f~~~~~~~i~~~L~~~~---~~~-~~~a~~la~~s~G~~~~A~~l~~~~~ 218 (394)
T PRK07940 167 RC-RHVALRTPSVEAVAEVLVRRD---GVD-PETARRAARASQGHIGRARRLATDEE 218 (394)
T ss_pred hC-eEEECCCCCHHHHHHHHHHhc---CCC-HHHHHHHHHHcCCCHHHHHHHhcChH
Confidence 98 599999999999888876432 222 33466789999998887777655433
No 203
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.67 E-value=1.6e-07 Score=100.58 Aligned_cols=118 Identities=18% Similarity=0.247 Sum_probs=73.2
Q ss_pred hhhcCCCCccccccc-hHH---HHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEE
Q psy11009 699 MVQKNPNIRWDDIAE-LTD---AKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFF 771 (863)
Q Consensus 699 ~~~k~p~~~~~dLiG-l~~---vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i 771 (863)
+...+...+|+++.- .+. +...+.+++ +.......+++|+||||||||+|+.++|.++ +..++
T Consensus 62 i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~----------~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~ 131 (244)
T PRK07952 62 IRPLHQNCSFENYRVECEGQMNALSKARQYV----------EEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVL 131 (244)
T ss_pred CCccccCCccccccCCCchHHHHHHHHHHHH----------HhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 445667788988752 222 333333333 1111123589999999999999999999998 78889
Q ss_pred EEecccccccccchh---HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHH
Q psy11009 772 NVCSSTLTSKYRGES---EKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLV 835 (863)
Q Consensus 772 ~vs~s~l~~~~~Ge~---e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~ 835 (863)
.++..++...+.... ......++.. ....++|+|||++.... .++...++.+++.
T Consensus 132 ~it~~~l~~~l~~~~~~~~~~~~~~l~~--l~~~dlLvIDDig~~~~-------s~~~~~~l~~Ii~ 189 (244)
T PRK07952 132 IITVADIMSAMKDTFSNSETSEEQLLND--LSNVDLLVIDEIGVQTE-------SRYEKVIINQIVD 189 (244)
T ss_pred EEEHHHHHHHHHHHHhhccccHHHHHHH--hccCCEEEEeCCCCCCC-------CHHHHHHHHHHHH
Confidence 998888775443221 1111223333 23578999999987632 2344445555554
No 204
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.67 E-value=2.2e-07 Score=104.34 Aligned_cols=132 Identities=23% Similarity=0.237 Sum_probs=83.9
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC---------CcEEEEeccccc
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG---------TTFFNVCSSTLT 779 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~---------~~~i~vs~s~l~ 779 (863)
++++|.++..+.|..++. .... +..+.+++|+||||||||++++++++++. +.++++++....
T Consensus 15 ~~l~gRe~e~~~l~~~l~------~~~~--~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALR------PILR--GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHH------HHHc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 479999999999988773 1111 23346899999999999999999998762 578888886543
Q ss_pred cc----------cc--c--------hhHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh
Q psy11009 780 SK----------YR--G--------ESEKLVRLLFEMAR-FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 780 ~~----------~~--G--------e~e~~ir~lf~~A~-~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD 838 (863)
+. .. | ........++.... ...+.||+|||+|.+.... + .++.+|+...+
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~----~~L~~l~~~~~ 157 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----D----DLLYQLSRARS 157 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----c----HHHHhHhcccc
Confidence 21 10 1 01223344444433 3457899999999997321 1 23444443311
Q ss_pred cCCCCCCCCCceEEEEecCCCC
Q psy11009 839 GLSSAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 839 ~l~~~~~~~~~VvVIaTTN~P~ 860 (863)
. ......++.+|++||.|.
T Consensus 158 ~---~~~~~~~v~lI~i~n~~~ 176 (365)
T TIGR02928 158 N---GDLDNAKVGVIGISNDLK 176 (365)
T ss_pred c---cCCCCCeEEEEEEECCcc
Confidence 1 111234688899999885
No 205
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.67 E-value=2.4e-07 Score=104.63 Aligned_cols=168 Identities=15% Similarity=0.092 Sum_probs=105.8
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHHh-----h-----hhhHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLAL-----T-----VGSSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~~-----~-----vg~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||||||++|+.+++. |+-. +....--|++ ..|...... + .......+|.+++...+. ..
T Consensus 45 Gp~G~GKTtla~~la~~l~c~~---~~~~~pc~~c-~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~----p~ 116 (363)
T PRK14961 45 GTRGVGKTTIARLLAKSLNCQN---GITSNPCRKC-IICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYS----PS 116 (363)
T ss_pred cCCCCCHHHHHHHHHHHhcCCC---CCCCCCCCCC-HHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcC----cc
Confidence 99999999999999994 3211 0000011111 111111000 0 002234466666543221 12
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
.....|+||||+|.+- ....|.||..|.. +...+.+|.+|+.++.|.+++..|+ ..++|++|+.++..
T Consensus 117 ~~~~kviIIDEa~~l~--------~~a~naLLk~lEe---~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~ 184 (363)
T PRK14961 117 KSRFKVYLIDEVHMLS--------RHSFNALLKTLEE---PPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIF 184 (363)
T ss_pred cCCceEEEEEChhhcC--------HHHHHHHHHHHhc---CCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHH
Confidence 3345799999999873 2345667766653 3336777778888999999998898 57899999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.+++..+++.... ++..+..+|..+.| +..++.+++..+
T Consensus 185 ~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~l~~~ 224 (363)
T PRK14961 185 NFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNLLEHA 224 (363)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999988654432 23456778888876 667777666655
No 206
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.66 E-value=9.4e-08 Score=114.28 Aligned_cols=69 Identities=20% Similarity=0.238 Sum_probs=55.5
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
..|+++|+|.++++|+|++...+++..++..... ...+.+-++|+||||||||++++++|++++..+++
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~E 140 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQE 140 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHH
Confidence 4699999999999999999999999887642110 11333469999999999999999999999876544
No 207
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.65 E-value=1.7e-07 Score=103.66 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=69.7
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHHH
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREAL 241 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~I 241 (863)
.+.||||||+|.+.. ...+.|+..|+.... ...+|.+||.+..+.+++..|+ ..+++.+|+.++...+
T Consensus 125 ~~~vlilDe~~~l~~--------~~~~~L~~~le~~~~---~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~ 192 (337)
T PRK12402 125 DYKTILLDNAEALRE--------DAQQALRRIMEQYSR---TCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDV 192 (337)
T ss_pred CCcEEEEeCcccCCH--------HHHHHHHHHHHhccC---CCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHH
Confidence 356999999998842 223455555554332 3445556777778888888797 5689999999999999
Q ss_pred HHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHH
Q psy11009 242 LKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDAS 280 (863)
Q Consensus 242 L~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aa 280 (863)
++..+.+..+. ++..++.|+..+ +.++..+++...
T Consensus 193 l~~~~~~~~~~~~~~al~~l~~~~----~gdlr~l~~~l~ 228 (337)
T PRK12402 193 LESIAEAEGVDYDDDGLELIAYYA----GGDLRKAILTLQ 228 (337)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHH
Confidence 99988655443 234466777766 446666655443
No 208
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.64 E-value=4e-08 Score=102.95 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=89.2
Q ss_pred CcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEE
Q psy11009 91 PVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAV 167 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlF 167 (863)
|+||||||++|..+|+ .||....+|.+. +.|.+ ..++.. -....|||
T Consensus 57 GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~-k~~dl-------------------~~il~~----------l~~~~ILF 106 (233)
T PF05496_consen 57 GPPGLGKTTLARIIANELGVNFKITSGPAIE-KAGDL-------------------AAILTN----------LKEGDILF 106 (233)
T ss_dssp SSTTSSHHHHHHHHHHHCT--EEEEECCC---SCHHH-------------------HHHHHT------------TT-EEE
T ss_pred CCCccchhHHHHHHHhccCCCeEeccchhhh-hHHHH-------------------HHHHHh----------cCCCcEEE
Confidence 9999999999999999 667666676651 11111 122221 11345999
Q ss_pred EecccccccccccchhHhHHHHHHHHh-hcc----CCCC----------CCeEEEEccCCCCCccHHHhhccceEEEecC
Q psy11009 168 AKMFSSLAVQKLLRGSKTFRTLCIHKY-RLL----TFPS----------TPVQYSIQKGIPWDIDEALRRRLEKRIYIPL 232 (863)
Q Consensus 168 iDEiDal~~~R~~~~~~~v~n~lL~~l-d~~----~~~~----------~~VivIaATN~p~~LD~AllRRFD~~I~i~l 232 (863)
||||..+- +.+...|+..| |+. -..+ .+.-+||||.+...|.+.|+-||-....+..
T Consensus 107 IDEIHRln--------k~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~ 178 (233)
T PF05496_consen 107 IDEIHRLN--------KAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEF 178 (233)
T ss_dssp ECTCCC----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE---
T ss_pred Eechhhcc--------HHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhc
Confidence 99999774 33445566666 221 1111 2578999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCC
Q psy11009 233 PSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGY 267 (863)
Q Consensus 233 Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~ 267 (863)
=+.++-..|++.-...+.+. .+-....||.++.|-
T Consensus 179 Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGt 214 (233)
T PF05496_consen 179 YSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGT 214 (233)
T ss_dssp -THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTS
T ss_pred CCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCC
Confidence 99999999998877666554 233467899999873
No 209
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.64 E-value=7.4e-08 Score=114.01 Aligned_cols=74 Identities=23% Similarity=0.348 Sum_probs=54.4
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSR 816 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~ 816 (863)
...++|||++|||||+|++++|+++ +..++++++.++...+...........|.. +...+++|+||||+.+..+
T Consensus 314 ~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~-~y~~~DLLlIDDIq~l~gk 392 (617)
T PRK14086 314 YNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRR-RYREMDILLVDDIQFLEDK 392 (617)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHH-HhhcCCEEEEehhccccCC
Confidence 3569999999999999999999987 568899999888766544322222223332 2345789999999998654
No 210
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.64 E-value=3.2e-07 Score=97.61 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=56.6
Q ss_pred CCCcccccc--chHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccc
Q psy11009 704 PNIRWDDIA--ELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTL 778 (863)
Q Consensus 704 p~~~~~dLi--Gl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l 778 (863)
+..+|++++ ++..+...+..+.. . ....+++|+||||||||+|++++|+++ +..+.+++....
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~----------~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALR----------Q--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHh----------C--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 345777766 45556666665431 1 122489999999999999999999876 344556655443
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
... ...+.+... ...+||||||+.+.+
T Consensus 85 ~~~--------~~~~~~~~~--~~dlliiDdi~~~~~ 111 (235)
T PRK08084 85 AWF--------VPEVLEGME--QLSLVCIDNIECIAG 111 (235)
T ss_pred hhh--------hHHHHHHhh--hCCEEEEeChhhhcC
Confidence 211 111122111 236999999998854
No 211
>PRK04195 replication factor C large subunit; Provisional
Probab=98.64 E-value=1.6e-07 Score=109.88 Aligned_cols=165 Identities=10% Similarity=0.026 Sum_probs=101.5
Q ss_pred cceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceee
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIED 155 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~ 155 (863)
..+|+| |.||||||++|.++++. +..+.+....+..- +-..++.++..+.....
T Consensus 40 ~~lLL~---------GppG~GKTtla~ala~e----l~~~~ielnasd~r-------------~~~~i~~~i~~~~~~~s 93 (482)
T PRK04195 40 KALLLY---------GPPGVGKTSLAHALAND----YGWEVIELNASDQR-------------TADVIERVAGEAATSGS 93 (482)
T ss_pred CeEEEE---------CCCCCCHHHHHHHHHHH----cCCCEEEEcccccc-------------cHHHHHHHHHHhhccCc
Confidence 467889 99999999999999994 12122211111110 00122222222111110
Q ss_pred eccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCH
Q psy11009 156 YEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSK 235 (863)
Q Consensus 156 ~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~ 235 (863)
+ ....+.||+|||+|.+..+.+. ...+.|+..++. . +..+|.+||.++.+++.-+|+.-..|.|+.|+.
T Consensus 94 l--~~~~~kvIiIDEaD~L~~~~d~----~~~~aL~~~l~~---~--~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~ 162 (482)
T PRK04195 94 L--FGARRKLILLDEVDGIHGNEDR----GGARAILELIKK---A--KQPIILTANDPYDPSLRELRNACLMIEFKRLST 162 (482)
T ss_pred c--cCCCCeEEEEecCcccccccch----hHHHHHHHHHHc---C--CCCEEEeccCccccchhhHhccceEEEecCCCH
Confidence 0 0135789999999998753222 234555555542 1 234566789999999855665557899999999
Q ss_pred HHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHH
Q psy11009 236 AGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASM 281 (863)
Q Consensus 236 ~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal 281 (863)
.++..+|+..+....+. ++-.++.|+..+ +.||+.+++....
T Consensus 163 ~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s----~GDlR~ain~Lq~ 205 (482)
T PRK04195 163 RSIVPVLKRICRKEGIECDDEALKEIAERS----GGDLRSAINDLQA 205 (482)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHc----CCCHHHHHHHHHH
Confidence 99999999998554433 234467777766 4588888776544
No 212
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.64 E-value=6.5e-07 Score=106.23 Aligned_cols=170 Identities=13% Similarity=0.100 Sum_probs=110.6
Q ss_pred CcCCCccccccccccc-ccchhc---ccchhhhccCcchhHHHHH--------HHhhh--hhHHHHHHHHhhcccceeee
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSL---VLPLLAEEHGKLKFKEAIT--------LALTV--GSSLNLYRSITNRGFYIEDY 156 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~---~~~~l~~~~gk~s~~e~~~--------~~~~v--g~se~~~r~i~~~~~~l~~~ 156 (863)
|.+|+|||++|+.++| +|+-+- .++. ..--|++. .|-.+ +.+.- ......+|+++++..|..
T Consensus 45 GP~GvGKTTLAriLAkaLnC~~p~~~~g~~-~~PCG~C~-sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P-- 120 (700)
T PRK12323 45 GTRGVGKTTLSRILAKSLNCTGADGEGGIT-AQPCGQCR-ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAP-- 120 (700)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCccccccCC-CCCCcccH-HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhch--
Confidence 9999999999999999 444211 0000 00012221 11111 11100 112456778877654432
Q ss_pred ccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHH
Q psy11009 157 EVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKA 236 (863)
Q Consensus 157 ~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~ 236 (863)
...+-.|+||||+|.+- ....|.||..|. .+..++++|.+||.++.|.+.++.|. .+|.|..++.+
T Consensus 121 --~~gr~KViIIDEah~Ls--------~~AaNALLKTLE---EPP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~e 186 (700)
T PRK12323 121 --TAGRFKVYMIDEVHMLT--------NHAFNAMLKTLE---EPPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPG 186 (700)
T ss_pred --hcCCceEEEEEChHhcC--------HHHHHHHHHhhc---cCCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChH
Confidence 45567899999999884 234577776654 44447899999999999999999998 67899999999
Q ss_pred HHHHHHHHHhccCCCCC-cccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 237 GREALLKINLKEVKVDP-AVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 237 ~R~~IL~~~l~~~~l~~-dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
+..+.|+..+.+..+.. +..++.|++.+.| +..+..+++..+
T Consensus 187 ei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s~RdALsLLdQa 229 (700)
T PRK12323 187 HIVSHLDAILGEEGIAHEVNALRLLAQAAQG-SMRDALSLTDQA 229 (700)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 99999998885443332 2336778888775 666666666554
No 213
>PRK08116 hypothetical protein; Validated
Probab=98.63 E-value=1.3e-07 Score=102.69 Aligned_cols=101 Identities=20% Similarity=0.288 Sum_probs=62.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccch----hHHHHHHHHHHHHhCCCeEEEEcCCCccc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGE----SEKLVRLLFEMARFYAPSTIFIDEIDSLC 814 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge----~e~~ir~lf~~A~~~~p~ILfIDEID~l~ 814 (863)
..+++|+|+||||||+||.++|+++ +.+++.++.+++...+... .......+++. .....+|+|||+....
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~--l~~~dlLviDDlg~e~ 191 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRS--LVNADLLILDDLGAER 191 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHH--hcCCCEEEEecccCCC
Confidence 4589999999999999999999987 7899999988876543211 11111122222 2345799999996431
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 815 SRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 815 ~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
. .++ .+.+|...++...... .-+|.|||.+
T Consensus 192 ~-------t~~---~~~~l~~iin~r~~~~-----~~~IiTsN~~ 221 (268)
T PRK08116 192 D-------TEW---AREKVYNIIDSRYRKG-----LPTIVTTNLS 221 (268)
T ss_pred C-------CHH---HHHHHHHHHHHHHHCC-----CCEEEECCCC
Confidence 1 222 2344555555332211 1266788875
No 214
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.63 E-value=3.9e-07 Score=103.39 Aligned_cols=132 Identities=19% Similarity=0.194 Sum_probs=85.3
Q ss_pred cccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeccccccc-
Q psy11009 708 WDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVCSSTLTSK- 781 (863)
Q Consensus 708 ~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs~s~l~~~- 781 (863)
.+.++|.++..++|...+. .... +..+.+++++||||||||++++.+++++ +..++++++....+.
T Consensus 29 P~~l~~Re~e~~~l~~~l~------~~~~--~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~ 100 (394)
T PRK00411 29 PENLPHREEQIEELAFALR------PALR--GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRY 100 (394)
T ss_pred CCCCCCHHHHHHHHHHHHH------HHhC--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHH
Confidence 3568999999999888763 1111 2334579999999999999999999887 578899988654321
Q ss_pred ---------ccc--------hhHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCC
Q psy11009 782 ---------YRG--------ESEKLVRLLFEMAR-FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSA 843 (863)
Q Consensus 782 ---------~~G--------e~e~~ir~lf~~A~-~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~ 843 (863)
..+ ........+.+... ...+.||+|||+|.+..+. . ..++..|+..++.+.
T Consensus 101 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~-~-------~~~l~~l~~~~~~~~-- 170 (394)
T PRK00411 101 AIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE-G-------NDVLYSLLRAHEEYP-- 170 (394)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC-C-------chHHHHHHHhhhccC--
Confidence 111 11223333333333 2346899999999997221 1 125666666665432
Q ss_pred CCCCCceEEEEecCCCC
Q psy11009 844 EDSSKVVMVLAATNFPW 860 (863)
Q Consensus 844 ~~~~~~VvVIaTTN~P~ 860 (863)
..++.+|+++|.+.
T Consensus 171 ---~~~v~vI~i~~~~~ 184 (394)
T PRK00411 171 ---GARIGVIGISSDLT 184 (394)
T ss_pred ---CCeEEEEEEECCcc
Confidence 12577888888654
No 215
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=98.63 E-value=3.2e-07 Score=109.17 Aligned_cols=170 Identities=17% Similarity=0.124 Sum_probs=112.7
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcchhHHHHHHHh----------hhhhHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKFKEAITLAL----------TVGSSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~~e~~~~~~----------~vg~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.+|||||.+|+..++ +|+... +. ..-.|.+. .|-...+. .-+.....+|.++++..|.- .
T Consensus 45 Gp~GtGKTt~Ak~lAkal~c~~~--~~-~~pC~~C~-~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p----~ 116 (559)
T PRK05563 45 GPRGTGKTSAAKIFAKAVNCLNP--PD-GEPCNECE-ICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAP----S 116 (559)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCC--CC-CCCCCccH-HHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCc----c
Confidence 9999999999999999 444321 10 01122221 12111110 01233556788887654433 3
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
....-|++|||+|.+- ....|.||.-|.. +...+++|.+|+.|+.|.+.++.|.. ++.|.+|+..+..
T Consensus 117 ~~~~kViIIDE~~~Lt--------~~a~naLLKtLEe---pp~~~ifIlatt~~~ki~~tI~SRc~-~~~f~~~~~~ei~ 184 (559)
T PRK05563 117 EAKYKVYIIDEVHMLS--------TGAFNALLKTLEE---PPAHVIFILATTEPHKIPATILSRCQ-RFDFKRISVEDIV 184 (559)
T ss_pred cCCeEEEEEECcccCC--------HHHHHHHHHHhcC---CCCCeEEEEEeCChhhCcHHHHhHhe-EEecCCCCHHHHH
Confidence 4556799999999884 2346677776653 33367888888899999999988986 5889999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASM 281 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal 281 (863)
.+++..+++..+. .+..+..||..+.| +..++.+++..+..
T Consensus 185 ~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~Ldq~~~ 226 (559)
T PRK05563 185 ERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSILDQAIS 226 (559)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 9999988655433 23447778888876 77777777765533
No 216
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.62 E-value=1.7e-06 Score=103.71 Aligned_cols=176 Identities=13% Similarity=0.058 Sum_probs=112.9
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHHh----------hhhhHHHHH
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLAL----------TVGSSLNLY 143 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~~----------~vg~se~~~ 143 (863)
..+.|+| |.+|||||++|+.++|. |+-...-. .--|.+. .|-...+. .-+.....+
T Consensus 38 ~Ha~Lf~---------GP~GvGKTTlAriLAk~LnC~~~~~~---~pCg~C~-sCr~i~~g~~~DvlEidaAs~~gVd~I 104 (709)
T PRK08691 38 HHAYLLT---------GTRGVGKTTIARILAKSLNCENAQHG---EPCGVCQ-SCTQIDAGRYVDLLEIDAASNTGIDNI 104 (709)
T ss_pred CeEEEEE---------CCCCCcHHHHHHHHHHHhcccCCCCC---CCCcccH-HHHHHhccCccceEEEeccccCCHHHH
Confidence 3456888 99999999999999994 33211000 0001110 11111000 012234567
Q ss_pred HHHhhcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhc
Q psy11009 144 RSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRR 223 (863)
Q Consensus 144 r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRR 223 (863)
|.+++...|.- ...+..||||||+|.+- ....|.||..|.... ..+.+|.+||.+..|-+.++.|
T Consensus 105 Relle~a~~~P----~~gk~KVIIIDEad~Ls--------~~A~NALLKtLEEPp---~~v~fILaTtd~~kL~~TIrSR 169 (709)
T PRK08691 105 REVLENAQYAP----TAGKYKVYIIDEVHMLS--------KSAFNAMLKTLEEPP---EHVKFILATTDPHKVPVTVLSR 169 (709)
T ss_pred HHHHHHHHhhh----hhCCcEEEEEECccccC--------HHHHHHHHHHHHhCC---CCcEEEEEeCCccccchHHHHH
Confidence 88876532222 22355799999999763 234677887776432 3678888899999999998888
Q ss_pred cceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHH
Q psy11009 224 LEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDAS 280 (863)
Q Consensus 224 FD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aa 280 (863)
+ ..|.|..++.++-..+|+..+.+..+. .+-.+..|++.+.| +..++.+++..+.
T Consensus 170 C-~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnLLDqai 225 (709)
T PRK08691 170 C-LQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSLLDQAI 225 (709)
T ss_pred H-hhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence 8 567888999999999999888654443 23347788888864 6777777776553
No 217
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=98.61 E-value=1.2e-07 Score=102.54 Aligned_cols=75 Identities=13% Similarity=0.163 Sum_probs=55.7
Q ss_pred cEEEEEecccccccccccchhHhHHHHHHHHhhc-c-CC-----------CCCCeEEEEccCCCC-----CccHHHhhcc
Q psy11009 163 PTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRL-L-TF-----------PSTPVQYSIQKGIPW-----DIDEALRRRL 224 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~-~-~~-----------~~~~VivIaATN~p~-----~LD~AllRRF 224 (863)
+.+|||||+|.+- ..+.+.|+..|+. . .- ...++.||+|+|... .+++|+++||
T Consensus 106 g~~lllDEi~r~~--------~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~ 177 (262)
T TIGR02640 106 GFTLVYDEFTRSK--------PETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRL 177 (262)
T ss_pred CCEEEEcchhhCC--------HHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhc
Confidence 4699999999753 2345556665531 1 00 112567999999863 6799999999
Q ss_pred ceEEEecCCCHHHHHHHHHHHh
Q psy11009 225 EKRIYIPLPSKAGREALLKINL 246 (863)
Q Consensus 225 D~~I~i~lPd~~~R~~IL~~~l 246 (863)
..++++.|+.++-.+|++.+.
T Consensus 178 -~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 178 -ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred -EEEECCCCCHHHHHHHHHHhh
Confidence 689999999999999999876
No 218
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.61 E-value=9.8e-08 Score=92.43 Aligned_cols=103 Identities=27% Similarity=0.312 Sum_probs=63.0
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc------cccch---hHHHHHHHHHHHHhCCCeEEEEcCCCccc
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS------KYRGE---SEKLVRLLFEMARFYAPSTIFIDEIDSLC 814 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~------~~~Ge---~e~~ir~lf~~A~~~~p~ILfIDEID~l~ 814 (863)
+|||+||||||||++|+.+|..++.+++.+++..... .+.-. ..-....+.... ..++++|||||+...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a~ 78 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRAP 78 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccCC
Confidence 5899999999999999999999999999988765322 11100 000000000000 157899999998663
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHhcCCCC----CC---CCC------ceEEEEecCCCC
Q psy11009 815 SRRGSESEHEASRRVKSELLVQMDGLSSA----ED---SSK------VVMVLAATNFPW 860 (863)
Q Consensus 815 ~~R~~~~~~e~~~rv~~~LL~~lD~l~~~----~~---~~~------~VvVIaTTN~P~ 860 (863)
..++..|+..++.-.-. .. ... .+.||+|+|.+.
T Consensus 79 ------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~ 125 (139)
T PF07728_consen 79 ------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD 125 (139)
T ss_dssp ------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST
T ss_pred ------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC
Confidence 34677777777632111 00 111 389999999876
No 219
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.61 E-value=1.7e-07 Score=108.36 Aligned_cols=168 Identities=13% Similarity=0.021 Sum_probs=106.8
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcchhHHHHHHHh----------hhhhHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKFKEAITLAL----------TVGSSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~~e~~~~~~----------~vg~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||||||++|+.+++ +|+-..... .-.|.+.- |-..... .-......+|.+.++..+. ..
T Consensus 47 GP~GtGKTTlAriLAk~Lnce~~~~~---~pCg~C~s-C~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~----p~ 118 (484)
T PRK14956 47 GPRGVGKTTIARILAKRLNCENPIGN---EPCNECTS-CLEITKGISSDVLEIDAASNRGIENIRELRDNVKFA----PM 118 (484)
T ss_pred CCCCCCHHHHHHHHHHhcCcccccCc---cccCCCcH-HHHHHccCCccceeechhhcccHHHHHHHHHHHHhh----hh
Confidence 9999999999999999 444221110 01111100 1000000 0011234567776654322 13
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
..+..|+||||+|.+- ....|.||..|. .+..+|++|.|||.++.|.++++.|.. +++|.+++..+-.
T Consensus 119 ~g~~KV~IIDEah~Ls--------~~A~NALLKtLE---EPp~~viFILaTte~~kI~~TI~SRCq-~~~f~~ls~~~i~ 186 (484)
T PRK14956 119 GGKYKVYIIDEVHMLT--------DQSFNALLKTLE---EPPAHIVFILATTEFHKIPETILSRCQ-DFIFKKVPLSVLQ 186 (484)
T ss_pred cCCCEEEEEechhhcC--------HHHHHHHHHHhh---cCCCceEEEeecCChhhccHHHHhhhh-eeeecCCCHHHHH
Confidence 3456799999999884 345677877774 343479999999999999999999995 5788888888888
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
++++..+....+. .+-.+..||+.++| +..+.-+++..+
T Consensus 187 ~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~lLeq~ 226 (484)
T PRK14956 187 DYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSFMEQA 226 (484)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHHHHHH
Confidence 8888887554433 23457788888876 455555555443
No 220
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.61 E-value=5.4e-08 Score=107.55 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=68.9
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccccc--ccchhHHH----------HHHHHHHHHhCCCeEEEEcC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK--YRGESEKL----------VRLLFEMARFYAPSTIFIDE 809 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~--~~Ge~e~~----------ir~lf~~A~~~~p~ILfIDE 809 (863)
.+++||.||||||||++|+.+|..++.+++.+++...... +.|..... ....+..|. ..+++|++||
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~-~~g~illlDE 142 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWAL-QHNVALCFDE 142 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHH-hCCeEEEech
Confidence 3689999999999999999999999999999987654433 33332110 111222232 3578899999
Q ss_pred CCcccccCCCCchhhHHHHHHHHHHHHHhc-----CCCCC---CCCCceEEEEecCCCC
Q psy11009 810 IDSLCSRRGSESEHEASRRVKSELLVQMDG-----LSSAE---DSSKVVMVLAATNFPW 860 (863)
Q Consensus 810 ID~l~~~R~~~~~~e~~~rv~~~LL~~lD~-----l~~~~---~~~~~VvVIaTTN~P~ 860 (863)
+|...+ .+++.|...||. +.+.. .....+.||||+|...
T Consensus 143 in~a~p------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g 189 (327)
T TIGR01650 143 YDAGRP------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIG 189 (327)
T ss_pred hhccCH------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCC
Confidence 998743 245555555552 11111 1223578999999765
No 221
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.58 E-value=3.3e-07 Score=108.83 Aligned_cols=168 Identities=11% Similarity=0.022 Sum_probs=110.5
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcchhHHHHHH--------Hhh--hhhHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKFKEAITL--------ALT--VGSSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~~e~~~~--------~~~--vg~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||||||++|+..|| +|+-.+.-.. --|.+. .|.... .+. -......+|.++++..|-. .
T Consensus 44 GPpGvGKTTlAriLAK~LnC~~~~~~~---pCg~C~-sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P----~ 115 (702)
T PRK14960 44 GTRGVGKTTIARILAKCLNCETGVTST---PCEVCA-TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAP----T 115 (702)
T ss_pred CCCCCCHHHHHHHHHHHhCCCcCCCCC---CCccCH-HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhh----h
Confidence 9999999999999999 5553221100 012111 111000 000 0113456778887654322 3
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
..+..|+||||+|.+-. ...|.||.-|... ...+.+|.+||.+..+.+.++.|. .+|.|.+++..+..
T Consensus 116 ~gk~KV~IIDEVh~LS~--------~A~NALLKtLEEP---P~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~ 183 (702)
T PRK14960 116 QGRFKVYLIDEVHMLST--------HSFNALLKTLEEP---PEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEIT 183 (702)
T ss_pred cCCcEEEEEechHhcCH--------HHHHHHHHHHhcC---CCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHH
Confidence 34667999999998742 3456777776543 236788888889999999998898 57899999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.+++..+.+..+. .+..+..||..+.| +..++.+++..+
T Consensus 184 k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnLLDQa 223 (702)
T PRK14960 184 KHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSLTDQA 223 (702)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999888654433 23457788888876 777777776555
No 222
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.58 E-value=4.2e-07 Score=101.56 Aligned_cols=167 Identities=16% Similarity=0.069 Sum_probs=104.2
Q ss_pred CcCCCcccccccccccccchhcccch--hhhccCcchhHHHHHH-----Hh--hh---hhHHHHHHHHhhcccceeeecc
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPL--LAEEHGKLKFKEAITL-----AL--TV---GSSLNLYRSITNRGFYIEDYEV 158 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~--l~~~~gk~s~~e~~~~-----~~--~v---g~se~~~r~i~~~~~~l~~~~~ 158 (863)
|.||+|||.+|+.+++. +..+. -....|.+. .|-... .+ +- ......+|.+++...+..
T Consensus 43 G~~G~GKt~~a~~la~~----l~~~~~~~~~~c~~c~-~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p---- 113 (355)
T TIGR02397 43 GPRGTGKTSIARIFAKA----LNCQNGPDGEPCNECE-SCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAP---- 113 (355)
T ss_pred CCCCCCHHHHHHHHHHH----hcCCCCCCCCCCCCCH-HHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCc----
Confidence 99999999999999985 22111 001111110 000000 00 00 113345677776542222
Q ss_pred CCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHH
Q psy11009 159 SPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGR 238 (863)
Q Consensus 159 ~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R 238 (863)
.....-||+|||+|.+.. ...+.||..++. +...+++|.+||.++.|.+++..|+. .+++++|+..+.
T Consensus 114 ~~~~~~vviidea~~l~~--------~~~~~Ll~~le~---~~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l 181 (355)
T TIGR02397 114 SSGKYKVYIIDEVHMLSK--------SAFNALLKTLEE---PPEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDI 181 (355)
T ss_pred ccCCceEEEEeChhhcCH--------HHHHHHHHHHhC---CccceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHH
Confidence 123445999999998842 345677777654 22367888888999999999999995 789999999999
Q ss_pred HHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 239 EALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 239 ~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
..+++.++++..+. ++-.+..|+..+.| +...+.+.+..+
T Consensus 182 ~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~lekl 222 (355)
T TIGR02397 182 VERLKKILDKEGIKIEDEALELIARAADG-SLRDALSLLDQL 222 (355)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHHHHHH
Confidence 99999999655433 23346667777765 555555555444
No 223
>PRK05642 DNA replication initiation factor; Validated
Probab=98.58 E-value=3.9e-07 Score=96.92 Aligned_cols=96 Identities=18% Similarity=0.256 Sum_probs=61.9
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRG 818 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~ 818 (863)
..+++|+||+|||||+|++++++++ +..+++++..++.... ..+.+..+ ...+|+|||++.+.++.
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~--------~~~~~~~~--~~d~LiiDDi~~~~~~~- 113 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG--------PELLDNLE--QYELVCLDDLDVIAGKA- 113 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh--------HHHHHhhh--hCCEEEEechhhhcCCh-
Confidence 3689999999999999999999765 6788888887765421 11222222 34699999999885531
Q ss_pred CCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCC
Q psy11009 819 SESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861 (863)
Q Consensus 819 ~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ 861 (863)
....+|+..++.+... +..+|++++..|..
T Consensus 114 ---------~~~~~Lf~l~n~~~~~----g~~ilits~~~p~~ 143 (234)
T PRK05642 114 ---------DWEEALFHLFNRLRDS----GRRLLLAASKSPRE 143 (234)
T ss_pred ---------HHHHHHHHHHHHHHhc----CCEEEEeCCCCHHH
Confidence 1223455555544332 23566666666643
No 224
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.57 E-value=3.5e-07 Score=103.40 Aligned_cols=131 Identities=19% Similarity=0.146 Sum_probs=83.9
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------------
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------------- 769 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------------- 769 (863)
..|.++++|+|++.+++.|...+. .++.+..+||+||+|+||+++|.++|+.+-+.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 457789999999999999998773 13344579999999999999999999987321
Q ss_pred ---------------------EEEEecc--cccccccc-hhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCc
Q psy11009 770 ---------------------FFNVCSS--TLTSKYRG-ESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSES 821 (863)
Q Consensus 770 ---------------------~i~vs~s--~l~~~~~G-e~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~ 821 (863)
++.+... +-..+... -.-..+|.+..... ...+.|++|||+|.+..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~------ 155 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA------ 155 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH------
Confidence 1111110 00000000 01122444444332 34578999999998733
Q ss_pred hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 822 EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 822 ~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
...+.||+.++. +...+++|.+|+.|+.+
T Consensus 156 ------~aanaLLK~LEe------pp~~~~~IL~t~~~~~l 184 (365)
T PRK07471 156 ------NAANALLKVLEE------PPARSLFLLVSHAPARL 184 (365)
T ss_pred ------HHHHHHHHHHhc------CCCCeEEEEEECCchhc
Confidence 356788888853 23346677788887654
No 225
>PHA02244 ATPase-like protein
Probab=98.56 E-value=1.9e-07 Score=104.50 Aligned_cols=104 Identities=20% Similarity=0.227 Sum_probs=63.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccccc---ccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK---YRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGS 819 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~---~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~ 819 (863)
.++||+||||||||++|+++|..++.+|+.++...-... +..........-+-.| ...+++|||||++.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-~~~GgvLiLDEId~a~p---- 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-FKKGGLFFIDEIDASIP---- 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-hhcCCEEEEeCcCcCCH----
Confidence 479999999999999999999999999999974310000 1111001010111112 13578999999998744
Q ss_pred CchhhHHHHHHHHHHHHHhc-----CCCCCCCCCceEEEEecCCC
Q psy11009 820 ESEHEASRRVKSELLVQMDG-----LSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 820 ~~~~e~~~rv~~~LL~~lD~-----l~~~~~~~~~VvVIaTTN~P 859 (863)
.++..|...++. ..........+.+|+|+|.+
T Consensus 195 --------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~ 231 (383)
T PHA02244 195 --------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTL 231 (383)
T ss_pred --------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCC
Confidence 234444444431 11111112457899999985
No 226
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=3.7e-07 Score=101.01 Aligned_cols=123 Identities=16% Similarity=0.198 Sum_probs=80.0
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC--------cEEEEecccc
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT--------TFFNVCSSTL 778 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~--------~~i~vs~s~l 778 (863)
+|++++|++.+++.+...+. .++.+..+||+||+|+|||++|+++|+.+.+ .++.+...+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~- 69 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN- 69 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc-
Confidence 58999999999999998772 2334457899999999999999999998733 222332210
Q ss_pred cccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q psy11009 779 TSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLA 854 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIa 854 (863)
++.. .-..++.+.+.+. .....|++||++|.+.. ...+.||+.++. +...+++|.
T Consensus 70 -~~~i--~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~------------~a~naLLK~LEe------pp~~t~~il 128 (313)
T PRK05564 70 -KKSI--GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTE------------QAQNAFLKTIEE------PPKGVFIIL 128 (313)
T ss_pred -CCCC--CHHHHHHHHHHHhcCcccCCceEEEEechhhcCH------------HHHHHHHHHhcC------CCCCeEEEE
Confidence 1111 1223455544332 23456999999988733 256788888853 334456666
Q ss_pred ecCCCCCC
Q psy11009 855 ATNFPWEG 862 (863)
Q Consensus 855 TTN~P~~I 862 (863)
+|+.|+.+
T Consensus 129 ~~~~~~~l 136 (313)
T PRK05564 129 LCENLEQI 136 (313)
T ss_pred EeCChHhC
Confidence 66777643
No 227
>PRK08181 transposase; Validated
Probab=98.56 E-value=1.9e-07 Score=101.29 Aligned_cols=71 Identities=21% Similarity=0.339 Sum_probs=50.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchh-HHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGES-EKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~-e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
.+++|+||||||||+||.++|.++ |..+++++..++...+.... .......+.. ...+.+|+|||++.+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~--l~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK--LDKFDLLILDDLAYVTK 181 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH--HhcCCEEEEeccccccC
Confidence 589999999999999999999765 77888888888776542211 1112222222 23578999999987644
No 228
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.55 E-value=1.8e-07 Score=108.30 Aligned_cols=74 Identities=23% Similarity=0.401 Sum_probs=52.0
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
+.++++||||||+|||+|++++++++ +..++++++.++...+...........|... ....++|+||||+.+.+
T Consensus 140 ~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 140 PFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-YRNVDALFIEDIEVFSG 216 (445)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-cccCCEEEEcchhhhcC
Confidence 45689999999999999999999886 6889999887765443321111011123222 24578999999998865
No 229
>PRK08727 hypothetical protein; Validated
Probab=98.53 E-value=8.2e-07 Score=94.34 Aligned_cols=175 Identities=14% Similarity=0.089 Sum_probs=100.1
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhh--hhhHHHHHHHHhhcccceeeeccCCCCcEEEEE
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALT--VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVA 168 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~--vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFi 168 (863)
|.+|||||+++.+++.- +. ..|+. ..| +......+.+++++. ....+|+|
T Consensus 48 G~~G~GKThL~~a~~~~----~~------~~~~~--------~~y~~~~~~~~~~~~~~~~l----------~~~dlLiI 99 (233)
T PRK08727 48 GPAGTGKTHLALALCAA----AE------QAGRS--------SAYLPLQAAAGRLRDALEAL----------EGRSLVAL 99 (233)
T ss_pred CCCCCCHHHHHHHHHHH----HH------HcCCc--------EEEEeHHHhhhhHHHHHHHH----------hcCCEEEE
Confidence 88999999999998763 00 01110 001 112223344455431 23349999
Q ss_pred ecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCc---cHHHhhcc--ceEEEecCCCHHHHHHHHH
Q psy11009 169 KMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDI---DEALRRRL--EKRIYIPLPSKAGREALLK 243 (863)
Q Consensus 169 DEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~L---D~AllRRF--D~~I~i~lPd~~~R~~IL~ 243 (863)
||++.+...+.. ...++..++...... .-+|+.+.+.|..+ ++++..|| -..+.++.|+.++|.+|++
T Consensus 100 DDi~~l~~~~~~------~~~lf~l~n~~~~~~-~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~ 172 (233)
T PRK08727 100 DGLESIAGQRED------EVALFDFHNRARAAG-ITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR 172 (233)
T ss_pred eCcccccCChHH------HHHHHHHHHHHHHcC-CeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence 999988764421 122333333332221 22455455567766 79999997 5678899999999999999
Q ss_pred HHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHH
Q psy11009 244 INLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALAR 319 (863)
Q Consensus 244 ~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~ 319 (863)
.+.....+. ++-.++.||..+.| +...+.+++......+... ...||...+.+.+..
T Consensus 173 ~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~------------------~~~it~~~~~~~l~~ 230 (233)
T PRK08727 173 ERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA------------------KRRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh------------------CCCCCHHHHHHHHhh
Confidence 877433332 23346778888763 3344433344332212221 236788777776654
No 230
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.53 E-value=2.5e-07 Score=106.32 Aligned_cols=129 Identities=22% Similarity=0.289 Sum_probs=91.7
Q ss_pred CccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc
Q psy11009 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY 782 (863)
Q Consensus 706 ~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~ 782 (863)
....+++|.+.+.+++.+.+. ......-.||++|++||||..+||+|-... +.||+.+||..+....
T Consensus 138 ~~~~~liG~S~am~~l~~~i~----------kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIA----------KVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHH----------HHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 467789999999999998773 333444689999999999999999997776 5799999998764321
Q ss_pred -----cchhH-------HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh-----cCCCCCC
Q psy11009 783 -----RGESE-------KLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD-----GLSSAED 845 (863)
Q Consensus 783 -----~Ge~e-------~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD-----~l~~~~~ 845 (863)
.|... ....-.|+.| ..++||+|||..+. ..++..||..++ .+++...
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A---~GGTLfLDEI~~mp------------l~~Q~kLLRvLqe~~~~rvG~~~~ 272 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQA---NGGTLFLDEIGEMP------------LELQVKLLRVLQEREFERVGGNKP 272 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEc---CCceEEeeccccCC------------HHHHHHHHHHHHcCeeEecCCCcc
Confidence 11110 0111233333 37899999997763 457788887776 4444444
Q ss_pred CCCceEEEEecCCC
Q psy11009 846 SSKVVMVLAATNFP 859 (863)
Q Consensus 846 ~~~~VvVIaTTN~P 859 (863)
..-.|-||+|||+.
T Consensus 273 i~vdvRiIaaT~~d 286 (464)
T COG2204 273 IKVDVRIIAATNRD 286 (464)
T ss_pred cceeeEEEeecCcC
Confidence 45568999999974
No 231
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.53 E-value=5.7e-07 Score=100.39 Aligned_cols=75 Identities=8% Similarity=-0.020 Sum_probs=58.0
Q ss_pred EEEEEecccccccccccchhHhHHHHHHHHhhccC----------CCCCCeEEEEccCCCC-CccHHHhhccceEEEecC
Q psy11009 164 TLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT----------FPSTPVQYSIQKGIPW-DIDEALRRRLEKRIYIPL 232 (863)
Q Consensus 164 ~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~----------~~~~~VivIaATN~p~-~LD~AllRRFD~~I~i~l 232 (863)
-|||+||++.+- ..+.+.|+..|+.-. ....++++|+++|-.+ .+.++++.||..+|.++.
T Consensus 130 GiL~lDEInrl~--------~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~ 201 (334)
T PRK13407 130 GYLYIDEVNLLE--------DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRS 201 (334)
T ss_pred CeEEecChHhCC--------HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCC
Confidence 499999999874 355667777663211 1233799999999655 699999999999999998
Q ss_pred CCH-HHHHHHHHHHh
Q psy11009 233 PSK-AGREALLKINL 246 (863)
Q Consensus 233 Pd~-~~R~~IL~~~l 246 (863)
|.. ++|.+|++...
T Consensus 202 ~~~~~e~~~il~~~~ 216 (334)
T PRK13407 202 PRDVETRVEVIRRRD 216 (334)
T ss_pred CCcHHHHHHHHHHhh
Confidence 876 99999998754
No 232
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.53 E-value=1.5e-07 Score=110.88 Aligned_cols=128 Identities=24% Similarity=0.322 Sum_probs=86.4
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHH-----------hCCcEEEEec
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATE-----------CGTTFFNVCS 775 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~e-----------l~~~~i~vs~ 775 (863)
.|++|+|.+...+.+.+.+. .......+|||+|++||||+++|++|-.. .+.||+.++|
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~----------~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inC 286 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTIL----------LYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNC 286 (538)
T ss_pred chhheeeCCHHHHHHHHHHH----------HHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeec
Confidence 47789999999888888773 22233458999999999999999999877 4679999999
Q ss_pred cccccccc-----chhHH--------HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc---
Q psy11009 776 STLTSKYR-----GESEK--------LVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG--- 839 (863)
Q Consensus 776 s~l~~~~~-----Ge~e~--------~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~--- 839 (863)
..+..... |..+. ....+|+.| ..++||||||+.+.. .++..|+..++.
T Consensus 287 aal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~------------~~Q~kLl~~L~e~~~ 351 (538)
T PRK15424 287 GAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA---HGGTLFLDEIGEMPL------------PLQTRLLRVLEEKEV 351 (538)
T ss_pred ccCChhhHHHHhcCCccccccCccccccCCchhcc---CCCEEEEcChHhCCH------------HHHHHHHhhhhcCeE
Confidence 87643211 11100 001233333 368999999988844 367778877753
Q ss_pred --CCCCCCCCCceEEEEecCCC
Q psy11009 840 --LSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 840 --l~~~~~~~~~VvVIaTTN~P 859 (863)
+.......-.|.||+|||+.
T Consensus 352 ~r~G~~~~~~~dvRiIaat~~~ 373 (538)
T PRK15424 352 TRVGGHQPVPVDVRVISATHCD 373 (538)
T ss_pred EecCCCceeccceEEEEecCCC
Confidence 22222222346899999875
No 233
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.51 E-value=1.5e-07 Score=107.14 Aligned_cols=131 Identities=26% Similarity=0.280 Sum_probs=91.3
Q ss_pred CCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccc
Q psy11009 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSK 781 (863)
Q Consensus 705 ~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~ 781 (863)
......|||.+.+..++.+.|. -.....-.|||.|.+||||..+||+|-... ..||+.+||+.+-..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~----------~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIE----------VVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHH----------HHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 4467789999999999998873 223344589999999999999999998776 679999999876433
Q ss_pred ccchhH--HHHHHHHHHHHh--------CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh-----cCCCCCCC
Q psy11009 782 YRGESE--KLVRLLFEMARF--------YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD-----GLSSAEDS 846 (863)
Q Consensus 782 ~~Ge~e--~~ir~lf~~A~~--------~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD-----~l~~~~~~ 846 (863)
.. |+| .-.+-.|.-|.. ...+.||+|||..|.. .++..||..++ .+++....
T Consensus 289 Ll-ESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelPL------------~lQaKLLRvLQegEieRvG~~r~i 355 (550)
T COG3604 289 LL-ESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELPL------------ALQAKLLRVLQEGEIERVGGDRTI 355 (550)
T ss_pred HH-HHHHhcccccccccchhccCcceeecCCCeEechhhccCCH------------HHHHHHHHHHhhcceeecCCCcee
Confidence 21 111 011223322221 1368999999977743 47778887765 44444334
Q ss_pred CCceEEEEecCC
Q psy11009 847 SKVVMVLAATNF 858 (863)
Q Consensus 847 ~~~VvVIaTTN~ 858 (863)
.-.|-||||||+
T Consensus 356 kVDVRiIAATNR 367 (550)
T COG3604 356 KVDVRVIAATNR 367 (550)
T ss_pred EEEEEEEeccch
Confidence 456899999997
No 234
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.51 E-value=3.3e-07 Score=108.59 Aligned_cols=129 Identities=25% Similarity=0.279 Sum_probs=87.7
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccc
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLT 779 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~ 779 (863)
.+..++++|+|.+...+.+.+.+. .......+|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~----------~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQAR----------VVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHH----------HHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 445688999999999999888773 222334579999999999999999998875 5799999998774
Q ss_pred ccccchhHHHHHHHHHH---------------HHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC---
Q psy11009 780 SKYRGESEKLVRLLFEM---------------ARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS--- 841 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~---------------A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~--- 841 (863)
.... -..+|.. ......++||||||+.+.. .++..|+..++.-.
T Consensus 260 ~~~~------~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L~~------------~~Q~~Ll~~l~~~~~~~ 321 (534)
T TIGR01817 260 ETLL------ESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEISP------------AFQAKLLRVLQEGEFER 321 (534)
T ss_pred HHHH------HHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhCCH------------HHHHHHHHHHhcCcEEE
Confidence 3211 1112110 0112368999999999854 36677777775321
Q ss_pred --CCCCCCCceEEEEecCCC
Q psy11009 842 --SAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 842 --~~~~~~~~VvVIaTTN~P 859 (863)
........+.+|+||+.+
T Consensus 322 ~~~~~~~~~~~riI~~s~~~ 341 (534)
T TIGR01817 322 VGGNRTLKVDVRLVAATNRD 341 (534)
T ss_pred CCCCceEeecEEEEEeCCCC
Confidence 111112247888988864
No 235
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.51 E-value=1.4e-07 Score=105.17 Aligned_cols=51 Identities=25% Similarity=0.364 Sum_probs=41.7
Q ss_pred CCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 704 p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.+..|++|+|++++++.+.-....+ ...|+||.||||||||++|+++|..+
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 4567999999999999887544211 12489999999999999999999998
No 236
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.50 E-value=4.1e-07 Score=101.35 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=81.6
Q ss_pred cCcCCCcccccccccccc---cchhccc-chhhhccCcchhHHHHHHHhhhhhHHHHHHHH-hhcccceeeeccCCCCcE
Q psy11009 90 EPVVGSGTYLKHKSPIKM---NFLSLVL-PLLAEEHGKLKFKEAITLALTVGSSLNLYRSI-TNRGFYIEDYEVSPPGPT 164 (863)
Q Consensus 90 ~~~~~~g~~~~~~~~~~~---~~~~~~~-~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i-~~~~~~l~~~~~~~~~P~ 164 (863)
||+||||||++|+.+|+- +|.-|.. |-+ ..+ =.+|...-.-+.- ...-.+..-.-+...+ +
T Consensus 49 ~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l---------~p~----d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ 114 (329)
T COG0714 49 EGPPGVGKTLLARALARALGLPFVRIQCTPDL---------LPS----DLLGTYAYAALLLEPGEFRFVPGPLFAAVR-V 114 (329)
T ss_pred ECCCCccHHHHHHHHHHHhCCCeEEEecCCCC---------CHH----HhcCchhHhhhhccCCeEEEecCCcccccc-e
Confidence 699999999999999993 3333331 111 111 1133333322210 1111111111122222 7
Q ss_pred EEEEecccccccccccchhHhHHHHHHHHhhc----------cCCCCCCeEEEEccC-----CCCCccHHHhhccceEEE
Q psy11009 165 LAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRL----------LTFPSTPVQYSIQKG-----IPWDIDEALRRRLEKRIY 229 (863)
Q Consensus 165 IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~----------~~~~~~~VivIaATN-----~p~~LD~AllRRFD~~I~ 229 (863)
|+|+|||+... ..+.+.||..|+. ..- ...++||||+| .-..|.+|+++||-..++
T Consensus 115 ill~DEInra~--------p~~q~aLl~~l~e~~vtv~~~~~~~~-~~~f~viaT~Np~e~~g~~~l~eA~ldRf~~~~~ 185 (329)
T COG0714 115 ILLLDEINRAP--------PEVQNALLEALEERQVTVPGLTTIRL-PPPFIVIATQNPGEYEGTYPLPEALLDRFLLRIY 185 (329)
T ss_pred EEEEeccccCC--------HHHHHHHHHHHhCcEEEECCcCCcCC-CCCCEEEEccCccccCCCcCCCHHHHhhEEEEEe
Confidence 99999999653 4567778877743 112 24789999999 566889999999999999
Q ss_pred ecCC-CHHHHHHHHHHHhc
Q psy11009 230 IPLP-SKAGREALLKINLK 247 (863)
Q Consensus 230 i~lP-d~~~R~~IL~~~l~ 247 (863)
++.| ...+...++.....
T Consensus 186 v~yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 186 VDYPDSEEEERIILARVGG 204 (329)
T ss_pred cCCCCchHHHHHHHHhCcc
Confidence 9999 45555555554443
No 237
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=98.50 E-value=1.7e-07 Score=104.40 Aligned_cols=122 Identities=24% Similarity=0.311 Sum_probs=78.1
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc--cccchhHH
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS--KYRGESEK 788 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~--~~~Ge~e~ 788 (863)
++|.++++..+...+. ..+++||-||||||||++|+.+|..++.+|+.+.+..... ...|...-
T Consensus 26 ~~g~~~~~~~~l~a~~--------------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 26 VVGDEEVIELALLALL--------------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred eeccHHHHHHHHHHHH--------------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhH
Confidence 7788887777766552 2358999999999999999999999999999999874322 12222111
Q ss_pred HHH----HHHHHHH--hCCC--eEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC----CC--CCCCCceEEEE
Q psy11009 789 LVR----LLFEMAR--FYAP--STIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS----SA--EDSSKVVMVLA 854 (863)
Q Consensus 789 ~ir----~lf~~A~--~~~p--~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~----~~--~~~~~~VvVIa 854 (863)
... ..|.... .... +++|+|||+...+ .+++.||..|+... .. -.-...++||+
T Consensus 92 ~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p------------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~via 159 (329)
T COG0714 92 AALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP------------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIA 159 (329)
T ss_pred hhhhccCCeEEEecCCcccccceEEEEeccccCCH------------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEE
Confidence 110 0000000 0011 4999999977643 58888888887411 11 11224578888
Q ss_pred ecCC
Q psy11009 855 ATNF 858 (863)
Q Consensus 855 TTN~ 858 (863)
|+|.
T Consensus 160 T~Np 163 (329)
T COG0714 160 TQNP 163 (329)
T ss_pred ccCc
Confidence 8884
No 238
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.49 E-value=1.6e-07 Score=106.24 Aligned_cols=129 Identities=22% Similarity=0.293 Sum_probs=92.7
Q ss_pred CCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHH----hCCcEEEEecccccc
Q psy11009 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATE----CGTTFFNVCSSTLTS 780 (863)
Q Consensus 705 ~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~e----l~~~~i~vs~s~l~~ 780 (863)
...+.+|+|.+...+++.+.+.. ......+||++|++||||+++|++|... ...||+.+||..+..
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 44677899999999999888842 2333468999999999999999999633 367999999988765
Q ss_pred cccc-----h-------hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc-----CCCC
Q psy11009 781 KYRG-----E-------SEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG-----LSSA 843 (863)
Q Consensus 781 ~~~G-----e-------~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~-----l~~~ 843 (863)
.... . ......-+|+.|. .++||+|||..+.+ ..+..||..||. ++..
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~---GGtLfLDEI~~LP~------------~~Q~kLl~~le~g~~~rvG~~ 208 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQAN---GGTLFLDEIHRLPP------------EGQEKLLRVLEEGEYRRVGGS 208 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecC---CCEEehhhhhhCCH------------hHHHHHHHHHHcCceEecCCC
Confidence 4221 0 1112223444443 68999999987744 467888888885 5554
Q ss_pred CCCCCceEEEEecCC
Q psy11009 844 EDSSKVVMVLAATNF 858 (863)
Q Consensus 844 ~~~~~~VvVIaTTN~ 858 (863)
......|.+|+|||.
T Consensus 209 ~~~~~dVRli~AT~~ 223 (403)
T COG1221 209 QPRPVDVRLICATTE 223 (403)
T ss_pred CCcCCCceeeecccc
Confidence 445667899999984
No 239
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.49 E-value=9.5e-07 Score=92.93 Aligned_cols=130 Identities=15% Similarity=0.108 Sum_probs=81.0
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC--CccHHHhhcc--ceEEEecCCCHHH
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW--DIDEALRRRL--EKRIYIPLPSKAG 237 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~--~LD~AllRRF--D~~I~i~lPd~~~ 237 (863)
...+|+|||+|.+... . ...|+..++........+++++++..|. .+++.+..|| ...|++++|+..+
T Consensus 90 ~~~~liiDdi~~l~~~-----~---~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~ 161 (227)
T PRK08903 90 EAELYAVDDVERLDDA-----Q---QIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDAD 161 (227)
T ss_pred cCCEEEEeChhhcCch-----H---HHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHH
Confidence 3558999999987421 1 2234444433332221234444443332 4567777677 5799999999999
Q ss_pred HHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHH
Q psy11009 238 REALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEA 316 (863)
Q Consensus 238 R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~A 316 (863)
+..+++.+.....+. ++--++.|+...+| +..++..+++.-...+... ..+||...+.+.
T Consensus 162 ~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~------------------~~~i~~~~~~~~ 222 (227)
T PRK08903 162 KIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ------------------KRPVTLPLLREM 222 (227)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh------------------CCCCCHHHHHHH
Confidence 999999877544333 22346778886554 7888888887754444333 347888877776
Q ss_pred HH
Q psy11009 317 LA 318 (863)
Q Consensus 317 L~ 318 (863)
+.
T Consensus 223 l~ 224 (227)
T PRK08903 223 LA 224 (227)
T ss_pred Hh
Confidence 64
No 240
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.49 E-value=6.5e-07 Score=107.49 Aligned_cols=169 Identities=14% Similarity=0.092 Sum_probs=109.4
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcchhHHHHHH--------Hhh--hhhHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKFKEAITL--------ALT--VGSSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~~e~~~~--------~~~--vg~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.+|||||++|+.++| +|+-... -..--|++. .|-.+. .+. -......+|.+++...|.- .
T Consensus 45 GPpGvGKTTlAriLAKaLnCe~~~---~~~PCG~C~-sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P----~ 116 (830)
T PRK07003 45 GTRGVGKTTLSRIFAKALNCETGV---TSQPCGVCR-ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAP----V 116 (830)
T ss_pred CCCCCCHHHHHHHHHHHhcCccCC---CCCCCcccH-HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhcc----c
Confidence 9999999999999999 5442110 000111110 111110 110 0112345677776543322 3
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
..+-.|+||||+|.|-. .-.|.||..|.. +..++.||.+||.++.|-+.|+.|+ .+|.|..++.++..
T Consensus 117 ~gr~KVIIIDEah~LT~--------~A~NALLKtLEE---PP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv 184 (830)
T PRK07003 117 DARFKVYMIDEVHMLTN--------HAFNAMLKTLEE---PPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIV 184 (830)
T ss_pred cCCceEEEEeChhhCCH--------HHHHHHHHHHHh---cCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHH
Confidence 34567999999998842 346777777653 3337899999999999999999899 68899999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDAS 280 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aa 280 (863)
.+|+..+.+..+. .+-.+..|++.++| +..+.-+++..+.
T Consensus 185 ~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdALsLLdQAi 225 (830)
T PRK07003 185 SHLERILGEERIAFEPQALRLLARAAQG-SMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999888654433 23447788888887 4566666655543
No 241
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.49 E-value=9.7e-07 Score=102.50 Aligned_cols=135 Identities=10% Similarity=0.089 Sum_probs=87.2
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCC---ccHHHhhccc--eEEEecCCCHH
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWD---IDEALRRRLE--KRIYIPLPSKA 236 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~---LD~AllRRFD--~~I~i~lPd~~ 236 (863)
.+.+|+|||++.+..+. .....|...++.+...+ +-+||.+...|.. +|+.+..||. ..+.+..||.+
T Consensus 206 ~~dvLiIDDiq~l~~k~------~~~e~lf~l~N~~~~~~-k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e 278 (450)
T PRK14087 206 QNDVLIIDDVQFLSYKE------KTNEIFFTIFNNFIEND-KQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNK 278 (450)
T ss_pred cCCEEEEeccccccCCH------HHHHHHHHHHHHHHHcC-CcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHH
Confidence 34599999999986543 12233444443333332 3344444444543 5777777986 56677899999
Q ss_pred HHHHHHHHHhccCCC--C-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHH
Q psy11009 237 GREALLKINLKEVKV--D-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDF 313 (863)
Q Consensus 237 ~R~~IL~~~l~~~~l--~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df 313 (863)
+|.+||+..+....+ . ++--++.||..+.| +...|..+|..+...+..... ..+||.+.+
T Consensus 279 ~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~~----------------~~~it~~~v 341 (450)
T PRK14087 279 TATAIIKKEIKNQNIKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNPE----------------EKIITIEIV 341 (450)
T ss_pred HHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhcccC----------------CCCCCHHHH
Confidence 999999999965332 1 23336778888875 788888888877644444310 136888888
Q ss_pred HHHHHHh
Q psy11009 314 EEALARC 320 (863)
Q Consensus 314 ~~AL~~v 320 (863)
..++..+
T Consensus 342 ~~~l~~~ 348 (450)
T PRK14087 342 SDLFRDI 348 (450)
T ss_pred HHHHhhc
Confidence 8877654
No 242
>PRK06526 transposase; Provisional
Probab=98.49 E-value=2.7e-07 Score=99.39 Aligned_cols=72 Identities=19% Similarity=0.331 Sum_probs=48.3
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccch-hHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGE-SEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge-~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
..+++|+||||||||+||.+++.++ |..++.++..++....... ........+. ....+.+|+|||++.+..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~--~l~~~dlLIIDD~g~~~~ 173 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELV--KLGRYPLLIVDEVGYIPF 173 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHH--HhccCCEEEEcccccCCC
Confidence 3589999999999999999998876 6777777776665443211 0011111121 224578999999987743
No 243
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.48 E-value=2.8e-07 Score=102.82 Aligned_cols=124 Identities=23% Similarity=0.247 Sum_probs=79.4
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccccc----
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYR---- 783 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~---- 783 (863)
|+|.+...+.+.+.+. .......+|||+|++||||+++|++|.... +.||+.++|..+.....
T Consensus 1 liG~S~~m~~~~~~~~----------~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVS----------RLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHH----------HHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 4677777777766662 222334579999999999999999997665 47999999987643211
Q ss_pred -chhH-------HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC-----CCCCCCCCce
Q psy11009 784 -GESE-------KLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL-----SSAEDSSKVV 850 (863)
Q Consensus 784 -Ge~e-------~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l-----~~~~~~~~~V 850 (863)
|... ......|+.| ..++||||||+.+.. .++..|+..++.- .........|
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a---~gGtL~Ldei~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~ 135 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERA---DGGTLFLDELATASL------------LVQEKLLRVIEYGEFERVGGSQTLQVDV 135 (329)
T ss_pred hccccccccCcccccCCchhhC---CCCEEEeCChHhCCH------------HHHHHHHHHHHcCcEEecCCCceeccce
Confidence 1000 0001123333 378999999998843 3677777777532 1111223457
Q ss_pred EEEEecCCC
Q psy11009 851 MVLAATNFP 859 (863)
Q Consensus 851 vVIaTTN~P 859 (863)
.||+|||..
T Consensus 136 RiI~at~~~ 144 (329)
T TIGR02974 136 RLVCATNAD 144 (329)
T ss_pred EEEEechhh
Confidence 899999864
No 244
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.48 E-value=7.2e-07 Score=102.29 Aligned_cols=128 Identities=19% Similarity=0.234 Sum_probs=78.1
Q ss_pred cccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------EEEEec----c
Q psy11009 708 WDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT-------FFNVCS----S 776 (863)
Q Consensus 708 ~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~-------~i~vs~----s 776 (863)
++++.+.++..+.+...+. ..++++|+||||||||++|+.+|..++.. ++.+.. .
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 4567777777777766552 24689999999999999999999988531 222222 1
Q ss_pred ccccccc----ch--hHHHHHHHHHHHHh--CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC-------
Q psy11009 777 TLTSKYR----GE--SEKLVRLLFEMARF--YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS------- 841 (863)
Q Consensus 777 ~l~~~~~----Ge--~e~~ir~lf~~A~~--~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~------- 841 (863)
++...+. |- ....+..+...|.. ..|++||||||+.... .++..+++..|+.-.
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-----------~kiFGel~~lLE~~~rg~~~~v 308 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-----------SKVFGEVMMLMEHDKRGENWSV 308 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-----------HHhhhhhhhhccccccccccce
Confidence 2222221 10 01123334455553 3589999999986533 235666666665210
Q ss_pred -----C----CCCCCCceEEEEecCCCC
Q psy11009 842 -----S----AEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 842 -----~----~~~~~~~VvVIaTTN~P~ 860 (863)
. .-....++.||||+|..+
T Consensus 309 ~l~y~e~d~e~f~iP~Nl~IIgTMNt~D 336 (459)
T PRK11331 309 PLTYSENDEERFYVPENVYIIGLMNTAD 336 (459)
T ss_pred eeeccccccccccCCCCeEEEEecCccc
Confidence 0 001246689999999876
No 245
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.48 E-value=8.9e-07 Score=92.92 Aligned_cols=132 Identities=23% Similarity=0.240 Sum_probs=93.6
Q ss_pred hcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccc
Q psy11009 701 QKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSST 777 (863)
Q Consensus 701 ~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~ 777 (863)
..++++.+.+|+|.+.+++.|.+... .+. .|.|..+|||+|.-||||++|++|+-.+. +..+++|+..+
T Consensus 52 ~~~~~i~L~~l~Gvd~qk~~L~~NT~------~F~--~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~d 123 (287)
T COG2607 52 PDPDPIDLADLVGVDRQKEALVRNTE------QFA--EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKED 123 (287)
T ss_pred CCCCCcCHHHHhCchHHHHHHHHHHH------HHH--cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHH
Confidence 35567899999999999999988663 222 24677899999999999999999998887 67889998877
Q ss_pred ccccccchhHHHHHHHHHHHHh-CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 778 LTSKYRGESEKLVRLLFEMARF-YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 778 l~~~~~Ge~e~~ir~lf~~A~~-~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
+.. +-.+++..+. ...-|||+|++--=. . ......|-..|||--. .+..+|+|-+|+
T Consensus 124 l~~---------Lp~l~~~Lr~~~~kFIlFcDDLSFe~--------g---d~~yK~LKs~LeG~ve--~rP~NVl~YATS 181 (287)
T COG2607 124 LAT---------LPDLVELLRARPEKFILFCDDLSFEE--------G---DDAYKALKSALEGGVE--GRPANVLFYATS 181 (287)
T ss_pred Hhh---------HHHHHHHHhcCCceEEEEecCCCCCC--------C---chHHHHHHHHhcCCcc--cCCCeEEEEEec
Confidence 642 2334444443 335799999873211 1 1134455566776433 356789999999
Q ss_pred CCCCCC
Q psy11009 857 NFPWEG 862 (863)
Q Consensus 857 N~P~~I 862 (863)
||-..|
T Consensus 182 NRRHLl 187 (287)
T COG2607 182 NRRHLL 187 (287)
T ss_pred CCcccc
Confidence 986543
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.47 E-value=7.4e-07 Score=103.46 Aligned_cols=77 Identities=17% Similarity=0.219 Sum_probs=53.2
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEecccccccccchhHHHHHHHHHH-HHhCCCeEEEEcCCCc
Q psy11009 739 RRPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVCSSTLTSKYRGESEKLVRLLFEM-ARFYAPSTIFIDEIDS 812 (863)
Q Consensus 739 ~~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~-A~~~~p~ILfIDEID~ 812 (863)
+...++++|||++|||||+|++++++++ +..++++++.++...+..........+.+. .+.....+|+|||++.
T Consensus 138 ~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~ 217 (450)
T PRK14087 138 GISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQF 217 (450)
T ss_pred CcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEecccc
Confidence 3345679999999999999999999865 578899999887765543322110111111 1124577999999998
Q ss_pred ccc
Q psy11009 813 LCS 815 (863)
Q Consensus 813 l~~ 815 (863)
+.+
T Consensus 218 l~~ 220 (450)
T PRK14087 218 LSY 220 (450)
T ss_pred ccC
Confidence 854
No 247
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.46 E-value=1.6e-06 Score=104.79 Aligned_cols=128 Identities=20% Similarity=0.202 Sum_probs=82.2
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----------CCcEEEEecccc
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC----------GTTFFNVCSSTL 778 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el----------~~~~i~vs~s~l 778 (863)
+.|.|.++..++|..++. ....+ ..+...++++|+||||||.+++.+..++ .+.+++++|..+
T Consensus 755 D~LPhREeEIeeLasfL~------paIkg-sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLE------SGIKQ-SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHH------HHHhc-CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 679999999999998774 12222 2233345699999999999999998776 256789998654
Q ss_pred cccc----------------cc-hhHHHHHHHHHHHH--hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc
Q psy11009 779 TSKY----------------RG-ESEKLVRLLFEMAR--FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG 839 (863)
Q Consensus 779 ~~~~----------------~G-e~e~~ir~lf~~A~--~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~ 839 (863)
...+ .| .....+..+|.... .....||+|||||.|..+. ..++-.|+.+..
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~---------QDVLYnLFR~~~- 897 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT---------QKVLFTLFDWPT- 897 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH---------HHHHHHHHHHhh-
Confidence 3221 01 12334556665542 2335799999999997631 233344443321
Q ss_pred CCCCCCCCCceEEEEecCC
Q psy11009 840 LSSAEDSSKVVMVLAATNF 858 (863)
Q Consensus 840 l~~~~~~~~~VvVIaTTN~ 858 (863)
.....|+||+++|.
T Consensus 898 -----~s~SKLiLIGISNd 911 (1164)
T PTZ00112 898 -----KINSKLVLIAISNT 911 (1164)
T ss_pred -----ccCCeEEEEEecCc
Confidence 12345889999985
No 248
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.46 E-value=4.6e-07 Score=99.86 Aligned_cols=76 Identities=17% Similarity=0.183 Sum_probs=56.8
Q ss_pred CCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHH
Q psy11009 161 PGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREA 240 (863)
Q Consensus 161 ~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~ 240 (863)
..+.||||||+|.+... ...+.|...|+... .++.+|.+||.+..+++++.+||. .+.|+.|+..++..
T Consensus 99 ~~~~vliiDe~d~l~~~-------~~~~~L~~~le~~~---~~~~~Ilt~n~~~~l~~~l~sR~~-~i~~~~p~~~~~~~ 167 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLA-------DAQRHLRSFMEAYS---KNCSFIITANNKNGIIEPLRSRCR-VIDFGVPTKEEQIE 167 (316)
T ss_pred CCCeEEEEECcccccCH-------HHHHHHHHHHHhcC---CCceEEEEcCChhhchHHHHhhce-EEEeCCCCHHHHHH
Confidence 45789999999988321 12233333344332 257888899999999999999996 78999999999999
Q ss_pred HHHHHhc
Q psy11009 241 LLKINLK 247 (863)
Q Consensus 241 IL~~~l~ 247 (863)
|++.++.
T Consensus 168 il~~~~~ 174 (316)
T PHA02544 168 MMKQMIV 174 (316)
T ss_pred HHHHHHH
Confidence 8887654
No 249
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.46 E-value=7.2e-07 Score=99.49 Aligned_cols=70 Identities=23% Similarity=0.379 Sum_probs=50.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccch---hHHHHHHHHHHHHhCCCeEEEEcCCCccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGE---SEKLVRLLFEMARFYAPSTIFIDEIDSLC 814 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge---~e~~ir~lf~~A~~~~p~ILfIDEID~l~ 814 (863)
.+++|+||||||||+||.|+|+++ |..+++++..++....... ........+ .......+|+|||+....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~--~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVY--DLLINCDLLIIDDLGTEK 259 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHH--HHhccCCEEEEeccCCCC
Confidence 689999999999999999999997 7889999998876543221 000011112 223356899999997763
No 250
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.45 E-value=2.9e-07 Score=108.55 Aligned_cols=129 Identities=26% Similarity=0.303 Sum_probs=86.2
Q ss_pred CccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc
Q psy11009 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY 782 (863)
Q Consensus 706 ~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~ 782 (863)
-.|++|+|.+...+.+.+.+. .......+|||+|++||||+++|++|.... +.||+.++|..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~----------~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVR----------LYARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHH----------HHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 357789999999888888773 222333589999999999999999998764 6799999998764321
Q ss_pred -----cchhHH--------HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC-----CCCC
Q psy11009 783 -----RGESEK--------LVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL-----SSAE 844 (863)
Q Consensus 783 -----~Ge~e~--------~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l-----~~~~ 844 (863)
.|..+. ....+|+.| ..++||||||+.|.. .++..|+..++.- ....
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A---~gGTLfLdeI~~Lp~------------~~Q~~Ll~~L~~~~~~r~g~~~ 343 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAA---HRGTLFLDEIGEMPL------------PLQTRLLRVLEEREVVRVGGTE 343 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhc---CCceEEecChHhCCH------------HHHHHHHHHHhcCcEEecCCCc
Confidence 111000 011233333 368999999998843 3677777777532 1111
Q ss_pred CCCCceEEEEecCCC
Q psy11009 845 DSSKVVMVLAATNFP 859 (863)
Q Consensus 845 ~~~~~VvVIaTTN~P 859 (863)
...-.|.||+|||++
T Consensus 344 ~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 344 PVPVDVRVVAATHCA 358 (526)
T ss_pred eeeecceEEeccCCC
Confidence 122346799999875
No 251
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=9.4e-07 Score=103.05 Aligned_cols=171 Identities=13% Similarity=0.100 Sum_probs=114.4
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcchhHHHHH-------HHhhh--hhHHHHHHHHhhcccceeeeccCC
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKFKEAIT-------LALTV--GSSLNLYRSITNRGFYIEDYEVSP 160 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~~e~~~-------~~~~v--g~se~~~r~i~~~~~~l~~~~~~~ 160 (863)
|.||+|||++|+.+|| +|+.. +|.. .--|.+.--..+. +.+.- -.+...+|.+++...|.- ..
T Consensus 42 Gp~G~GKTT~ArilAk~LnC~~--~~~~-~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P----~~ 114 (491)
T PRK14964 42 GASGVGKTTCARIISLCLNCSN--GPTS-DPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLP----IS 114 (491)
T ss_pred CCCCccHHHHHHHHHHHHcCcC--CCCC-CCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhcc----cc
Confidence 9999999999999999 76643 3321 1112211000000 00100 113456888888765554 23
Q ss_pred CCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHH
Q psy11009 161 PGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREA 240 (863)
Q Consensus 161 ~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~ 240 (863)
.+.-|++|||+|.+-. ...|.||..|.. +...+++|.+|+.++.|.+.+..|+ ..++|.+++.++...
T Consensus 115 ~~~KVvIIDEah~Ls~--------~A~NaLLK~LEe---Pp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~ 182 (491)
T PRK14964 115 SKFKVYIIDEVHMLSN--------SAFNALLKTLEE---PAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVE 182 (491)
T ss_pred CCceEEEEeChHhCCH--------HHHHHHHHHHhC---CCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHH
Confidence 4567999999987742 345777777654 3336888888888999999998898 458999999999999
Q ss_pred HHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHH
Q psy11009 241 LLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASM 281 (863)
Q Consensus 241 IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal 281 (863)
+++..+++.... .+..+..|++.+.| +..++.+++..+..
T Consensus 183 ~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~alslLdqli~ 223 (491)
T PRK14964 183 HLVDIAKKENIEHDEESLKLIAENSSG-SMRNALFLLEQAAI 223 (491)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 999988654443 34457788888875 77777777766543
No 252
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.45 E-value=1.2e-06 Score=105.87 Aligned_cols=168 Identities=13% Similarity=0.077 Sum_probs=107.6
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHH----HHHhhhh---hHHHHHHHHhhcccceeeeccCCCC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAI----TLALTVG---SSLNLYRSITNRGFYIEDYEVSPPG 162 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~----~~~~~vg---~se~~~r~i~~~~~~l~~~~~~~~~ 162 (863)
|.||+|||++|+..|+. |+- ..+....--|.+. .|.- .+.+ =| .+...+|.+++...+.. ....
T Consensus 47 GP~GtGKTt~AriLAk~LnC~--~~~~~~~pC~~C~-~~~~~~~Dviei-daasn~~vd~IReLie~~~~~P----~~g~ 118 (725)
T PRK07133 47 GPRGTGKTSVAKIFANALNCS--HKTDLLEPCQECI-ENVNNSLDIIEM-DAASNNGVDEIRELIENVKNLP----TQSK 118 (725)
T ss_pred CCCCCcHHHHHHHHHHHhccc--ccCCCCCchhHHH-HhhcCCCcEEEE-eccccCCHHHHHHHHHHHHhch----hcCC
Confidence 99999999999999995 221 1000000011110 0100 0000 01 12455788887654443 2345
Q ss_pred cEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHHHH
Q psy11009 163 PTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALL 242 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL 242 (863)
..|++|||+|.+-. ...+.||..|.. +...+++|.+|+.++.|.+.++.|+. +++|.+|+.++...+|
T Consensus 119 ~KV~IIDEa~~LT~--------~A~NALLKtLEE---PP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L 186 (725)
T PRK07133 119 YKIYIIDEVHMLSK--------SAFNALLKTLEE---PPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRL 186 (725)
T ss_pred CEEEEEEChhhCCH--------HHHHHHHHHhhc---CCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHH
Confidence 67999999998742 346777777654 33368888889999999999999996 7999999999999999
Q ss_pred HHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 243 KINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 243 ~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
+..+.+..+. .+..+..||..+.| +..++..++..+
T Consensus 187 ~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLekl 223 (725)
T PRK07133 187 EFILEKENISYEKNALKLIAKLSSG-SLRDALSIAEQV 223 (725)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9887554433 22336678877764 555666555544
No 253
>PRK08727 hypothetical protein; Validated
Probab=98.45 E-value=1e-06 Score=93.68 Aligned_cols=64 Identities=25% Similarity=0.353 Sum_probs=45.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSR 816 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~ 816 (863)
..++|+||+|||||+|+++++.++ +..+++++..++.. .+...++. .....+|+|||++.+...
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~--------~~~~~~~~--l~~~dlLiIDDi~~l~~~ 108 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAG--------RLRDALEA--LEGRSLVALDGLESIAGQ 108 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhh--------hHHHHHHH--HhcCCEEEEeCcccccCC
Confidence 469999999999999999998775 56667777555332 12223332 234679999999988653
No 254
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.44 E-value=5.8e-07 Score=105.99 Aligned_cols=128 Identities=23% Similarity=0.279 Sum_probs=87.3
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc-
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY- 782 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~- 782 (863)
...+++|.+...+.+.+.+. .......+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~----------~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIE----------VVAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHH----------HHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 57889999999999988773 223344689999999999999999998875 5799999998874321
Q ss_pred ----cchhHH-------HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC-----CCCCCC
Q psy11009 783 ----RGESEK-------LVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL-----SSAEDS 846 (863)
Q Consensus 783 ----~Ge~e~-------~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l-----~~~~~~ 846 (863)
.|.... .....|+.+ ..++|||||||.+.. .++..|+..++.- ......
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a---~gGtL~ldeI~~L~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~ 319 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELA---DGGTLFLDEIGELPL------------ALQAKLLRVLQYGEIQRVGSDRSL 319 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhc---CCCEEEecChhhCCH------------HHHHHHHHHHhcCCEeeCCCCcce
Confidence 111000 001123333 378999999999854 3667777777532 221122
Q ss_pred CCceEEEEecCCC
Q psy11009 847 SKVVMVLAATNFP 859 (863)
Q Consensus 847 ~~~VvVIaTTN~P 859 (863)
...+.||+|||+.
T Consensus 320 ~~~~RiI~~t~~~ 332 (509)
T PRK05022 320 RVDVRVIAATNRD 332 (509)
T ss_pred ecceEEEEecCCC
Confidence 2357899999875
No 255
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.44 E-value=8.2e-07 Score=95.69 Aligned_cols=71 Identities=27% Similarity=0.442 Sum_probs=51.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchhHH-HH-HHHHHHHHhCCCeEEEEcCCCcc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGESEK-LV-RLLFEMARFYAPSTIFIDEIDSL 813 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~e~-~i-r~lf~~A~~~~p~ILfIDEID~l 813 (863)
...+++|+||||+|||+||.|||.++ |.+++.++.+++.......-.. .. ..+... .....+|+|||+...
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~--l~~~dlLIiDDlG~~ 179 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRE--LKKVDLLIIDDIGYE 179 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHH--hhcCCEEEEecccCc
Confidence 44799999999999999999999987 7899999999887654321111 00 111110 234779999999765
No 256
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.44 E-value=9.6e-07 Score=107.56 Aligned_cols=153 Identities=14% Similarity=0.111 Sum_probs=92.2
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccc-ceeeeccCCCCcEEEEEe
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGF-YIEDYEVSPPGPTLAVAK 169 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~-~l~~~~~~~~~P~IlFiD 169 (863)
|.||||||++|+.+++. +..+.+. +.++. .| ...++.+++.+. .+. ......|||||
T Consensus 59 GPpGtGKTTLA~aIA~~----~~~~f~~-------lna~~-----~~--i~dir~~i~~a~~~l~----~~~~~~IL~ID 116 (725)
T PRK13341 59 GPPGVGKTTLARIIANH----TRAHFSS-------LNAVL-----AG--VKDLRAEVDRAKERLE----RHGKRTILFID 116 (725)
T ss_pred CCCCCCHHHHHHHHHHH----hcCccee-------ehhhh-----hh--hHHHHHHHHHHHHHhh----hcCCceEEEEe
Confidence 99999999999999984 2222111 11110 11 122344443321 011 12346799999
Q ss_pred cccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCC--CCCccHHHhhccceEEEecCCCHHHHHHHHHHHhc
Q psy11009 170 MFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI--PWDIDEALRRRLEKRIYIPLPSKAGREALLKINLK 247 (863)
Q Consensus 170 EiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~--p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~ 247 (863)
|+|.+-. ...+.|+..+.. ..+++|++|.. ...++++++.|. ..|++++++.+++..||+.++.
T Consensus 117 EIh~Ln~--------~qQdaLL~~lE~-----g~IiLI~aTTenp~~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~ 182 (725)
T PRK13341 117 EVHRFNK--------AQQDALLPWVEN-----GTITLIGATTENPYFEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQ 182 (725)
T ss_pred ChhhCCH--------HHHHHHHHHhcC-----ceEEEEEecCCChHhhhhhHhhccc-cceecCCCCHHHHHHHHHHHHH
Confidence 9998743 123455554432 25778877643 357999999886 5699999999999999999886
Q ss_pred c-------CCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHH
Q psy11009 248 E-------VKVD-PAVDLTHIASQLDGYSGADITNVCRDAS 280 (863)
Q Consensus 248 ~-------~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aa 280 (863)
. ..+. ++-.++.|+..+.| ...++.+++..++
T Consensus 183 ~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~ 222 (725)
T PRK13341 183 DKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAV 222 (725)
T ss_pred HHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 2 1111 12235667777643 4455555555443
No 257
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.44 E-value=1.5e-06 Score=97.89 Aligned_cols=55 Identities=22% Similarity=0.239 Sum_probs=46.0
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT 768 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~ 768 (863)
..|..+++|+|++++.+.+..++. .++.+..+||+||+|+|||++|+.+|+.+.+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 457789999999999999998773 2233457999999999999999999999854
No 258
>PRK05642 DNA replication initiation factor; Validated
Probab=98.44 E-value=1.4e-06 Score=92.59 Aligned_cols=111 Identities=12% Similarity=0.041 Sum_probs=74.8
Q ss_pred EEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCc---cHHHhhccc--eEEEecCCCHHHHH
Q psy11009 165 LAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDI---DEALRRRLE--KRIYIPLPSKAGRE 239 (863)
Q Consensus 165 IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~L---D~AllRRFD--~~I~i~lPd~~~R~ 239 (863)
+|+||+++.+..+.. ....|...++.+...+ +.+||+++..|..+ ++.+..||- ..+.+..|+.+.|.
T Consensus 100 ~LiiDDi~~~~~~~~------~~~~Lf~l~n~~~~~g-~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~ 172 (234)
T PRK05642 100 LVCLDDLDVIAGKAD------WEEALFHLFNRLRDSG-RRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKL 172 (234)
T ss_pred EEEEechhhhcCChH------HHHHHHHHHHHHHhcC-CEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHH
Confidence 889999998865431 2234544455444333 56788777766544 678888996 66777899999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMS 283 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~a 283 (863)
.+++.......+. ++.-++.|+...++ +++.+..++..-...+
T Consensus 173 ~il~~ka~~~~~~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~ 216 (234)
T PRK05642 173 RALQLRASRRGLHLTDEVGHFILTRGTR-SMSALFDLLERLDQAS 216 (234)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence 9999666433222 23346778888874 8888888876554333
No 259
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.43 E-value=7.1e-07 Score=108.88 Aligned_cols=129 Identities=22% Similarity=0.325 Sum_probs=87.8
Q ss_pred CCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccc
Q psy11009 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSK 781 (863)
Q Consensus 705 ~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~ 781 (863)
+..|++++|.+...+.+.+.+.. ......+|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~----------~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEM----------VAQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 35788999999999998887731 12233579999999999999999998765 579999999876432
Q ss_pred -----ccch--------hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC-----CCC
Q psy11009 782 -----YRGE--------SEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL-----SSA 843 (863)
Q Consensus 782 -----~~Ge--------~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l-----~~~ 843 (863)
..|. .... ...++.+ ..++||||||+.+.. .++..|+..++.- ...
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~-~g~le~a---~~GtL~Ldei~~L~~------------~~Q~~L~~~l~~~~~~~~g~~ 505 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQR-IGRFELA---DKSSLFLDEVGDMPL------------ELQPKLLRVLQEQEFERLGSN 505 (686)
T ss_pred HhhhhhcCcccccccccccch-hhHHHhc---CCCeEEEechhhCCH------------HHHHHHHHHHHhCCEEeCCCC
Confidence 1111 1111 1223333 368999999998843 3677777777532 111
Q ss_pred CCCCCceEEEEecCCC
Q psy11009 844 EDSSKVVMVLAATNFP 859 (863)
Q Consensus 844 ~~~~~~VvVIaTTN~P 859 (863)
......+.||+||+.+
T Consensus 506 ~~~~~~~RiI~~t~~~ 521 (686)
T PRK15429 506 KIIQTDVRLIAATNRD 521 (686)
T ss_pred CcccceEEEEEeCCCC
Confidence 1223457899999875
No 260
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.43 E-value=8.6e-07 Score=99.37 Aligned_cols=50 Identities=26% Similarity=0.346 Sum_probs=42.3
Q ss_pred CCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 705 ~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.-.|++|+|++++|..|.-.+..| ...|+||.||+|||||++||+++..+
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l 62 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLL 62 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 447999999999999998876422 23589999999999999999998776
No 261
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=1.3e-06 Score=102.57 Aligned_cols=166 Identities=11% Similarity=0.084 Sum_probs=102.1
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHH----------HHHHhhhhhHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEA----------ITLALTVGSSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~----------~~~~~~vg~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||||||++|+++++. |+- .|. ..--|.+. .|- ..+...-......+|.+.+...+.. .
T Consensus 43 GppGtGKTTlA~~lA~~l~c~---~~~-~~~cg~C~-sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p----~ 113 (504)
T PRK14963 43 GPRGVGKTTTARLIAMAVNCS---GED-PKPCGECE-SCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAP----L 113 (504)
T ss_pred CCCCCCHHHHHHHHHHHHhcc---CCC-CCCCCcCh-hhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhcc----c
Confidence 99999999999999994 221 110 00001000 000 0000000112345667655433322 2
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
...+.||+|||+|.+. ....+.||..|.. +...+++|.+||.++.|.+++..|.. +++|..|+.++..
T Consensus 114 ~~~~kVVIIDEad~ls--------~~a~naLLk~LEe---p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~ 181 (504)
T PRK14963 114 RGGRKVYILDEAHMMS--------KSAFNALLKTLEE---PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIA 181 (504)
T ss_pred cCCCeEEEEECccccC--------HHHHHHHHHHHHh---CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHH
Confidence 2467799999999663 3345677766654 33367888889999999999999986 7999999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRD 278 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~ 278 (863)
.+++..+.+..+. .+-.+..|+..+.| +..++.+.+..
T Consensus 182 ~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~Lek 220 (504)
T PRK14963 182 GKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESLLER 220 (504)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 9999988654443 23346677777764 34444444433
No 262
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.42 E-value=1.2e-06 Score=96.90 Aligned_cols=71 Identities=20% Similarity=0.303 Sum_probs=50.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchh-HHHHHHHHHHHHhCCCeEEEEcCCCcc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGES-EKLVRLLFEMARFYAPSTIFIDEIDSL 813 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~-e~~ir~lf~~A~~~~p~ILfIDEID~l 813 (863)
..+|++|+||||||||+||.|+|+++ |.++..+..+++...+.... .......++. .....+|+|||+...
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~--l~~~dlLiIDDiG~e 229 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDA--VKEAPVLMLDDIGAE 229 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHH--hcCCCEEEEecCCCc
Confidence 45799999999999999999999998 78888888877654432211 0111222222 245789999999764
No 263
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.41 E-value=4.8e-07 Score=104.46 Aligned_cols=103 Identities=19% Similarity=0.264 Sum_probs=63.5
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC--cEEEEeccc-ccccccchh
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT--TFFNVCSST-LTSKYRGES 786 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~--~~i~vs~s~-l~~~~~Ge~ 786 (863)
.|+|.+++.+.+...+. ...++||.||||||||++|++++..++. +|..+.+.. ......|..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 48899999888877652 3358999999999999999999998743 444333321 111122211
Q ss_pred -HHHH--HHHHHHHHhC---CCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh
Q psy11009 787 -EKLV--RLLFEMARFY---APSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 787 -e~~i--r~lf~~A~~~---~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD 838 (863)
-... ..-|...... ...+||+|||..+. ..+++.||..|+
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI~ras------------p~~QsaLLeam~ 132 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEIWKAG------------PAILNTLLTAIN 132 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeecccccCC------------HHHHHHHHHHHH
Confidence 0000 1112111100 23499999996543 458899999994
No 264
>PRK06620 hypothetical protein; Validated
Probab=98.41 E-value=1.9e-06 Score=90.60 Aligned_cols=102 Identities=9% Similarity=0.118 Sum_probs=70.1
Q ss_pred EEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCC--ccHHHhhccce--EEEecCCCHHHHH
Q psy11009 164 TLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWD--IDEALRRRLEK--RIYIPLPSKAGRE 239 (863)
Q Consensus 164 ~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~--LD~AllRRFD~--~I~i~lPd~~~R~ 239 (863)
.+|+|||++.+- . ..|...++.+...+ +.+||+++..|.. | ++++-||.. .+.+..||.+.|.
T Consensus 87 d~lliDdi~~~~--------~---~~lf~l~N~~~e~g-~~ilits~~~p~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~ 153 (214)
T PRK06620 87 NAFIIEDIENWQ--------E---PALLHIFNIINEKQ-KYLLLTSSDKSRNFTL-PDLSSRIKSVLSILLNSPDDELIK 153 (214)
T ss_pred CEEEEeccccch--------H---HHHHHHHHHHHhcC-CEEEEEcCCCccccch-HHHHHHHhCCceEeeCCCCHHHHH
Confidence 489999999431 1 13333334444443 5788888877765 5 676669973 5889999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.+++.......+. ++--++.|+..+.| +...+.+++...
T Consensus 154 ~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l 193 (214)
T PRK06620 154 ILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENI 193 (214)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHH
Confidence 9999988643333 23347788888864 778888777663
No 265
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.41 E-value=1.6e-06 Score=101.54 Aligned_cols=168 Identities=15% Similarity=0.088 Sum_probs=105.3
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHHh-----h--hh---hHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLAL-----T--VG---SSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~~-----~--vg---~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||+|||++|+..++. |+... +. ....|.+ ..|-..... + =+ .....+|.+.+...+.. .
T Consensus 45 Gp~G~GKTtlAr~lAk~L~c~~~--~~-~~pc~~c-~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P----~ 116 (486)
T PRK14953 45 GPRGTGKTTIARILAKVLNCLNP--QE-GEPCGKC-ENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTP----I 116 (486)
T ss_pred CCCCCCHHHHHHHHHHHhcCcCC--CC-CCCCCcc-HHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCc----c
Confidence 99999999999999994 33211 10 0112222 222111110 0 00 11334566666544433 2
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
...+.|++|||+|.+.. ...+.||..|.. +...+++|.+|+.++.|.+++..|+. .|.|.+|+..+..
T Consensus 117 ~~~~KVvIIDEad~Lt~--------~a~naLLk~LEe---pp~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~ 184 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTK--------EAFNALLKTLEE---PPPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIK 184 (486)
T ss_pred cCCeeEEEEEChhhcCH--------HHHHHHHHHHhc---CCCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHH
Confidence 34567999999997742 235677766654 33356777778888999999998986 6999999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.+++..++...+. .+-.+..||..+.| +..++.+++..+
T Consensus 185 ~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~Ldkl 224 (486)
T PRK14953 185 EYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASLLDQA 224 (486)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999998655443 22336677777664 455555555544
No 266
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.40 E-value=2.1e-06 Score=94.23 Aligned_cols=101 Identities=9% Similarity=0.065 Sum_probs=69.5
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHHH
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREAL 241 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~I 241 (863)
.+.||||||+|.+... ..+.|+..++.... .+.+|.++|.+..+.+++.+|+. .++|++|+..+...+
T Consensus 102 ~~~vviiDe~~~l~~~--------~~~~L~~~le~~~~---~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~l~~~ei~~~ 169 (319)
T PRK00440 102 PFKIIFLDEADNLTSD--------AQQALRRTMEMYSQ---NTRFILSCNYSSKIIDPIQSRCA-VFRFSPLKKEAVAER 169 (319)
T ss_pred CceEEEEeCcccCCHH--------HHHHHHHHHhcCCC---CCeEEEEeCCccccchhHHHHhh-eeeeCCCCHHHHHHH
Confidence 4679999999988431 23455555544332 34566678888888888888987 489999999999999
Q ss_pred HHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHH
Q psy11009 242 LKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRD 278 (863)
Q Consensus 242 L~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~ 278 (863)
++.++++..+. .+-.++.|+..+.| |+..+.+.
T Consensus 170 l~~~~~~~~~~i~~~al~~l~~~~~g----d~r~~~~~ 203 (319)
T PRK00440 170 LRYIAENEGIEITDDALEAIYYVSEG----DMRKAINA 203 (319)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHcCC----CHHHHHHH
Confidence 99999655443 23346777776543 45544433
No 267
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.40 E-value=1.9e-06 Score=103.75 Aligned_cols=108 Identities=18% Similarity=0.144 Sum_probs=68.9
Q ss_pred CeEEEEc-cCCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHH
Q psy11009 203 PVQYSIQ-KGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDAS 280 (863)
Q Consensus 203 ~VivIaA-TN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aa 280 (863)
.+++|+| ||.++.++++|..||. .+++++.+.+++..|++.++.+.... .+--++.|+..+ ..|...-+++..+.
T Consensus 323 ~~VLI~aTt~~~~~l~~aLrSR~~-~i~~~pls~edi~~Il~~~a~~~~v~ls~eal~~L~~ys--~~gRraln~L~~~~ 399 (615)
T TIGR02903 323 DFVLIGATTRDPEEINPALRSRCA-EVFFEPLTPEDIALIVLNAAEKINVHLAAGVEELIARYT--IEGRKAVNILADVY 399 (615)
T ss_pred eEEEEEeccccccccCHHHHhcee-EEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHCC--CcHHHHHHHHHHHH
Confidence 4566655 5669999999988998 56888899999999999998765432 122355666665 35555555554554
Q ss_pred HHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcC
Q psy11009 281 MMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNK 322 (863)
Q Consensus 281 l~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~p 322 (863)
..++++.... ........|+.+|+.+++..-+-
T Consensus 400 ~~~~~~~~~~---------~~~~~~~~I~~edv~~~l~~~r~ 432 (615)
T TIGR02903 400 GYALYRAAEA---------GKENDKVTITQDDVYEVIQISRL 432 (615)
T ss_pred HHHHHHHHHh---------ccCCCCeeECHHHHHHHhCCCcC
Confidence 3433332100 00111347999999999876543
No 268
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.39 E-value=1.2e-06 Score=103.50 Aligned_cols=132 Identities=21% Similarity=0.305 Sum_probs=86.4
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccc
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLT 779 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~ 779 (863)
.....|++++|.+...+.+.+.+. ........|||+|++||||+++|+++.... ..||+.++|..+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~----------~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQAR----------KLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHH----------HHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 456789999999998887777662 112223469999999999999999986654 4699999998864
Q ss_pred cccc-----chhH-------HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC-----CC
Q psy11009 780 SKYR-----GESE-------KLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL-----SS 842 (863)
Q Consensus 780 ~~~~-----Ge~e-------~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l-----~~ 842 (863)
.... |... .....+|+.| ..++|||||||.+.. .++..|+..++.- ..
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a---~~GtL~LdeI~~L~~------------~~Q~~Ll~~l~~~~~~~~g~ 332 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQA---NGGSVLLDEIGEMSP------------RMQAKLLRFLNDGTFRRVGE 332 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhc---CCCEEEEeChhhCCH------------HHHHHHHHHHhcCCcccCCC
Confidence 3211 1000 0001223333 368999999998844 3567777777531 11
Q ss_pred CCCCCCceEEEEecCCC
Q psy11009 843 AEDSSKVVMVLAATNFP 859 (863)
Q Consensus 843 ~~~~~~~VvVIaTTN~P 859 (863)
.......|.||+||+.+
T Consensus 333 ~~~~~~~vRiI~st~~~ 349 (520)
T PRK10820 333 DHEVHVDVRVICATQKN 349 (520)
T ss_pred CcceeeeeEEEEecCCC
Confidence 11122357899998875
No 269
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=98.39 E-value=5.8e-07 Score=103.01 Aligned_cols=62 Identities=18% Similarity=0.066 Sum_probs=42.8
Q ss_pred CCcEEEEEecccccccccccchhHhHHHHHHHHhh--------------------ccCCCCCCeEEEEccCCCC----Cc
Q psy11009 161 PGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR--------------------LLTFPSTPVQYSIQKGIPW----DI 216 (863)
Q Consensus 161 ~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld--------------------~~~~~~~~VivIaATN~p~----~L 216 (863)
..|+||||||++.--..+ +..++++.|+ .+.-+. +|.||||+|..| .|
T Consensus 271 ~~~~vliIDEINRani~k-------iFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~-Nl~IIgTMNt~Drs~~~l 342 (459)
T PRK11331 271 EKKYVFIIDEINRANLSK-------VFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPE-NVYIIGLMNTADRSLAVV 342 (459)
T ss_pred cCCcEEEEehhhccCHHH-------hhhhhhhhccccccccccceeeeccccccccccCCC-CeEEEEecCccccchhhc
Confidence 478999999999654333 2222222221 233343 899999999999 89
Q ss_pred cHHHhhccceEEEec
Q psy11009 217 DEALRRRLEKRIYIP 231 (863)
Q Consensus 217 D~AllRRFD~~I~i~ 231 (863)
|.||+|||. .|++.
T Consensus 343 D~AlrRRF~-fi~i~ 356 (459)
T PRK11331 343 DYALRRRFS-FIDIE 356 (459)
T ss_pred cHHHHhhhh-eEEec
Confidence 999999994 46664
No 270
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.39 E-value=1.2e-06 Score=97.76 Aligned_cols=127 Identities=23% Similarity=0.231 Sum_probs=83.2
Q ss_pred cccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccc---
Q psy11009 708 WDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSK--- 781 (863)
Q Consensus 708 ~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~--- 781 (863)
+++++|.+...+.+.+.+. .......+|||+|++||||+++|++|.... +.+|+.++|..+...
T Consensus 5 ~~~liG~S~~~~~~~~~i~----------~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~ 74 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVS----------RLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLD 74 (326)
T ss_pred cCccEECCHHHHHHHHHHH----------HHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHH
Confidence 5679999999888888773 222334579999999999999999997665 479999999886422
Q ss_pred --ccchhH-------HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC-----CCCCCC
Q psy11009 782 --YRGESE-------KLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS-----SAEDSS 847 (863)
Q Consensus 782 --~~Ge~e-------~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~-----~~~~~~ 847 (863)
+.|... ......++. ...++|||||||.+.. .++..|+..++.-. ......
T Consensus 75 ~~lfg~~~~~~~g~~~~~~g~l~~---a~gGtL~l~~i~~L~~------------~~Q~~L~~~l~~~~~~~~g~~~~~~ 139 (326)
T PRK11608 75 SELFGHEAGAFTGAQKRHPGRFER---ADGGTLFLDELATAPM------------LVQEKLLRVIEYGELERVGGSQPLQ 139 (326)
T ss_pred HHHccccccccCCcccccCCchhc---cCCCeEEeCChhhCCH------------HHHHHHHHHHhcCcEEeCCCCceee
Confidence 111100 000112222 2368999999998854 36677777775321 111112
Q ss_pred CceEEEEecCCC
Q psy11009 848 KVVMVLAATNFP 859 (863)
Q Consensus 848 ~~VvVIaTTN~P 859 (863)
..+.||+||+..
T Consensus 140 ~~~RiI~~s~~~ 151 (326)
T PRK11608 140 VNVRLVCATNAD 151 (326)
T ss_pred ccEEEEEeCchh
Confidence 357889988764
No 271
>PRK09183 transposase/IS protein; Provisional
Probab=98.38 E-value=8.6e-07 Score=95.76 Aligned_cols=72 Identities=26% Similarity=0.378 Sum_probs=49.6
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccch-hHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGE-SEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge-~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
.+++|+||||||||+||.+++..+ |..+.+++..++...+... ....+..++... ...+++|+|||++.+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-~~~~dlLiiDdlg~~~~ 178 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-VMAPRLLIIDEIGYLPF 178 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-hcCCCEEEEcccccCCC
Confidence 589999999999999999997764 7778888877765433211 111223344332 24578999999987643
No 272
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=2.3e-06 Score=104.61 Aligned_cols=169 Identities=15% Similarity=0.057 Sum_probs=108.0
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHHhh-------hh---hHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLALT-------VG---SSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~~~-------vg---~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||||||++|+.++|. |+-...- ..--|++ -.|-.+.... =+ .....+|.+++...|.. .
T Consensus 45 GPpGtGKTTLARiLAk~Lnce~~~~---~~pCg~C-~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P----~ 116 (944)
T PRK14949 45 GTRGVGKTSLARLFAKGLNCEQGVT---ATPCGVC-SSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRP----S 116 (944)
T ss_pred CCCCCCHHHHHHHHHHhccCccCCC---CCCCCCc-hHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhh----h
Confidence 99999999999999994 3321000 0011111 1111111100 01 12345777776543332 2
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
..+--|+||||+|.+- ....|.||.-|.. +..++.+|.+|+.+..|-+.|+.|. .++.|..++.++..
T Consensus 117 ~gk~KViIIDEAh~LT--------~eAqNALLKtLEE---PP~~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~ 184 (944)
T PRK14949 117 RGRFKVYLIDEVHMLS--------RSSFNALLKTLEE---PPEHVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIG 184 (944)
T ss_pred cCCcEEEEEechHhcC--------HHHHHHHHHHHhc---cCCCeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHH
Confidence 3456799999999883 4456777776653 3336788888999999988988888 67899999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDAS 280 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aa 280 (863)
..|+..+....+. .+-.+..|+..+.| +..++-++|..|.
T Consensus 185 ~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnLLdQal 225 (944)
T PRK14949 185 TQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSLTDQAI 225 (944)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9998888543332 22346778888876 6667777776554
No 273
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.37 E-value=9.8e-07 Score=103.81 Aligned_cols=168 Identities=12% Similarity=0.041 Sum_probs=108.3
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcchhHHHHH--------HHhh--hhhHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKFKEAIT--------LALT--VGSSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~~e~~~--------~~~~--vg~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||||||++|+.++| +|+-..... .--|++. .|-.+ +.+. -......+|.+++...|-. .
T Consensus 45 Gp~G~GKTt~A~~lAk~l~c~~~~~~---~pCg~C~-~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p----~ 116 (509)
T PRK14958 45 GTRGVGKTTISRILAKCLNCEKGVSA---NPCNDCE-NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAP----T 116 (509)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCc---ccCCCCH-HHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhcc----c
Confidence 9999999999999999 554321110 1112221 11000 0000 1122344677776543322 3
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
..+-.|+||||+|.+-. ...|.||.-|... ...+.+|.+|+.++.|-+.++.|. .+++|..++..+-.
T Consensus 117 ~~~~kV~iIDE~~~ls~--------~a~naLLk~LEep---p~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~ 184 (509)
T PRK14958 117 KGRFKVYLIDEVHMLSG--------HSFNALLKTLEEP---PSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIA 184 (509)
T ss_pred cCCcEEEEEEChHhcCH--------HHHHHHHHHHhcc---CCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHH
Confidence 44567999999998843 3357777766543 336788888888988888888788 56788888888888
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
..++..+++..+. .+..+..|++.+.| +..++.+++..+
T Consensus 185 ~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al~lLdq~ 224 (509)
T PRK14958 185 AHCQHLLKEENVEFENAALDLLARAANG-SVRDALSLLDQS 224 (509)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHH
Confidence 8888888654433 23447778888865 777888877665
No 274
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.37 E-value=1.6e-06 Score=102.01 Aligned_cols=72 Identities=25% Similarity=0.320 Sum_probs=57.7
Q ss_pred HhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 696 ERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 696 ~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
...|+++|.|.+.+||+-...-.+++..++.. .+.+ ..+.+-+||+||||||||++++++|++++..+.+-.
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~------~~~~-~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEE------MFSG-SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHH------Hhcc-CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 35799999999999999999888888887741 1111 123346788999999999999999999999888753
No 275
>PRK06620 hypothetical protein; Validated
Probab=98.37 E-value=1.5e-06 Score=91.35 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=37.8
Q ss_pred CCCccccccc---hHHHHHHHHHHhhcCCCChhhhhccC-CC-CceEEEECCCCCChHHHHHHHHHHhCCcE
Q psy11009 704 PNIRWDDIAE---LTDAKRLLEEAVVLPMWMPEFFKGIR-RP-WKGVLMVGPPGTGKTMLAKAVATECGTTF 770 (863)
Q Consensus 704 p~~~~~dLiG---l~~vk~~L~e~V~~pl~~pe~~~~~~-~p-~kgvLL~GPPGtGKT~LAraIA~el~~~~ 770 (863)
+.-+|++++- +..+...+.++.. ..+ .| .+.++||||||||||||++++++..+..+
T Consensus 11 ~~~tfd~Fvvg~~N~~a~~~~~~~~~----------~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~ 72 (214)
T PRK06620 11 SKYHPDEFIVSSSNDQAYNIIKNWQC----------GFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI 72 (214)
T ss_pred CCCCchhhEecccHHHHHHHHHHHHH----------ccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE
Confidence 4456777553 3344555554331 111 23 36899999999999999999999887533
No 276
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.37 E-value=3e-07 Score=101.76 Aligned_cols=144 Identities=8% Similarity=-0.049 Sum_probs=85.7
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhh-cccceeeeccCCCCcEEEEEe
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITN-RGFYIEDYEVSPPGPTLAVAK 169 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~-~~~~l~~~~~~~~~P~IlFiD 169 (863)
|.||||||++++.+|+. +..|.++-....- ....=++|.....++.-.. .-+.-|-+..+...+++||+|
T Consensus 71 G~pGtGKTtla~~lA~~----l~~~~~rV~~~~~-----l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlD 141 (327)
T TIGR01650 71 GYHGTGKSTHIEQIAAR----LNWPCVRVNLDSH-----VSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFD 141 (327)
T ss_pred eCCCChHHHHHHHHHHH----HCCCeEEEEecCC-----CChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEec
Confidence 99999999999999995 4445442211100 0011134443221111000 001111123344578899999
Q ss_pred cccccccccccchhHhHHHHHHHH---h--hcc---CCCCCCeEEEEccCCCC------------CccHHHhhccceEEE
Q psy11009 170 MFSSLAVQKLLRGSKTFRTLCIHK---Y--RLL---TFPSTPVQYSIQKGIPW------------DIDEALRRRLEKRIY 229 (863)
Q Consensus 170 EiDal~~~R~~~~~~~v~n~lL~~---l--d~~---~~~~~~VivIaATN~p~------------~LD~AllRRFD~~I~ 229 (863)
|+|..-. .....++.+|.. + .+. -.+...+.||||+|-.+ .|+.|++.||-.++.
T Consensus 142 Ein~a~p-----~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~ 216 (327)
T TIGR01650 142 EYDAGRP-----DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTT 216 (327)
T ss_pred hhhccCH-----HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEee
Confidence 9997632 223334444441 1 110 11233688999999865 468999999999999
Q ss_pred ecCCCHHHHHHHHHHHhcc
Q psy11009 230 IPLPSKAGREALLKINLKE 248 (863)
Q Consensus 230 i~lPd~~~R~~IL~~~l~~ 248 (863)
++.|+.+.=.+|+......
T Consensus 217 ~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 217 LNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred CCCCCHHHHHHHHHhhccC
Confidence 9999999999999876543
No 277
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.36 E-value=9e-07 Score=104.90 Aligned_cols=167 Identities=16% Similarity=0.050 Sum_probs=107.7
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcchhHHHHH--------HHhh--hhhHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKFKEAIT--------LALT--VGSSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~~e~~~--------~~~~--vg~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||||||++|+.+|+ +|+..|.... -.|.+. .|-.. ..+. -.-....+|.+++...+...
T Consensus 45 GP~GvGKTTlA~~lAk~L~C~~~~~~~---~Cg~C~-sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~---- 116 (605)
T PRK05896 45 GPRGIGKTSIAKIFAKAINCLNPKDGD---CCNSCS-VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPT---- 116 (605)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCCCCC---CCcccH-HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchh----
Confidence 9999999999999999 5555554321 123331 11000 0000 00123457777765443321
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
....-|++|||+|.+-. ...+.||..|+... ..+++|.+|+.+..|.+++++|+. +++|++|+..+..
T Consensus 117 ~~~~KVIIIDEad~Lt~--------~A~NaLLKtLEEPp---~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~ 184 (605)
T PRK05896 117 TFKYKVYIIDEAHMLST--------SAWNALLKTLEEPP---KHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQ 184 (605)
T ss_pred hCCcEEEEEechHhCCH--------HHHHHHHHHHHhCC---CcEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHH
Confidence 12345899999998732 23567777776433 367888888999999999999997 6899999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRD 278 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~ 278 (863)
.+++..+.+.... ++-.+..|+..+.| +..++.+++..
T Consensus 185 ~~L~~il~kegi~Is~eal~~La~lS~G-dlR~AlnlLek 223 (605)
T PRK05896 185 ELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDGLSILDQ 223 (605)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHH
Confidence 9999888554332 23346777877765 55555555554
No 278
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=9.1e-07 Score=98.21 Aligned_cols=160 Identities=13% Similarity=0.098 Sum_probs=94.5
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEec
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKM 170 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDE 170 (863)
|.||||||++|.++++. +.++.....+ +.+..+. ..| ...+|.++..... .........+.||+|||
T Consensus 41 Gp~G~GKTtla~~la~~----l~~~~~~~~~--~eln~sd----~~~--~~~vr~~i~~~~~-~~~~~~~~~~kviiiDE 107 (319)
T PLN03025 41 GPPGTGKTTSILALAHE----LLGPNYKEAV--LELNASD----DRG--IDVVRNKIKMFAQ-KKVTLPPGRHKIVILDE 107 (319)
T ss_pred CCCCCCHHHHHHHHHHH----HhcccCccce--eeecccc----ccc--HHHHHHHHHHHHh-ccccCCCCCeEEEEEec
Confidence 99999999999999996 2121110000 0000000 001 1124444322100 00011234578999999
Q ss_pred ccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCC
Q psy11009 171 FSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVK 250 (863)
Q Consensus 171 iDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~ 250 (863)
+|.+.. ...+.|+..|..... .+.+|.+||.++.+.+++..|. ..++|+.|+.++...+++..+++..
T Consensus 108 ~d~lt~--------~aq~aL~~~lE~~~~---~t~~il~~n~~~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~eg 175 (319)
T PLN03025 108 ADSMTS--------GAQQALRRTMEIYSN---TTRFALACNTSSKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEK 175 (319)
T ss_pred hhhcCH--------HHHHHHHHHHhcccC---CceEEEEeCCccccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcC
Confidence 999853 224556655543322 4556678899999999998898 4799999999999999998885443
Q ss_pred CC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 251 VD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 251 l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
+. ++-.+..|+..+. .|++.+++.-
T Consensus 176 i~i~~~~l~~i~~~~~----gDlR~aln~L 201 (319)
T PLN03025 176 VPYVPEGLEAIIFTAD----GDMRQALNNL 201 (319)
T ss_pred CCCCHHHHHHHHHHcC----CCHHHHHHHH
Confidence 33 2334666776654 4666555443
No 279
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.35 E-value=1.7e-07 Score=90.23 Aligned_cols=102 Identities=29% Similarity=0.322 Sum_probs=54.3
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEecc-cccc-cccchh----HHHHHHHHHHHH-hCCCeEEEEcCCCccccc
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS-TLTS-KYRGES----EKLVRLLFEMAR-FYAPSTIFIDEIDSLCSR 816 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s-~l~~-~~~Ge~----e~~ir~lf~~A~-~~~p~ILfIDEID~l~~~ 816 (863)
++||.|+||+|||++|+++|+.++..|.+|.+. ++.. ...|.. .. ..|...+ -.-..|+|+|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~---~~f~~~~GPif~~ill~DEiNra--- 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQET---GEFEFRPGPIFTNILLADEINRA--- 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTT---TEEEEEE-TT-SSEEEEETGGGS---
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCC---CeeEeecChhhhceeeecccccC---
Confidence 589999999999999999999999999988764 3321 111110 00 0000000 001259999999655
Q ss_pred CCCCchhhHHHHHHHHHHHHHhcCCCC-----CCCCCceEEEEecCCCC
Q psy11009 817 RGSESEHEASRRVKSELLVQMDGLSSA-----EDSSKVVMVLAATNFPW 860 (863)
Q Consensus 817 R~~~~~~e~~~rv~~~LL~~lD~l~~~-----~~~~~~VvVIaTTN~P~ 860 (863)
..++++.||..|..-.-. -.-...++||||-|..+
T Consensus 75 ---------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e 114 (131)
T PF07726_consen 75 ---------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVE 114 (131)
T ss_dssp ----------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT-
T ss_pred ---------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccc
Confidence 346899999999632111 11234578899988654
No 280
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.35 E-value=5.7e-07 Score=108.61 Aligned_cols=125 Identities=20% Similarity=0.188 Sum_probs=79.5
Q ss_pred cccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---------------------
Q psy11009 708 WDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC--------------------- 766 (863)
Q Consensus 708 ~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el--------------------- 766 (863)
|.+|+|++.++..+.-....| ...+|||.||||||||++|++++..+
T Consensus 3 f~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 678999999998887655311 12479999999999999999999887
Q ss_pred --------------CCcEEEEecccccccccchhHHHHHHHHHHH---------HhCCCeEEEEcCCCcccccCCCCchh
Q psy11009 767 --------------GTTFFNVCSSTLTSKYRGESEKLVRLLFEMA---------RFYAPSTIFIDEIDSLCSRRGSESEH 823 (863)
Q Consensus 767 --------------~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A---------~~~~p~ILfIDEID~l~~~R~~~~~~ 823 (863)
..+|+.+.........+|...- ...+... .....+|||||||+.+..
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~--~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------- 140 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDI--ERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------- 140 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccH--HHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------
Confidence 2467666554433333332210 1111000 011346999999988843
Q ss_pred hHHHHHHHHHHHHHhcCC-------CCCCCCCceEEEEecCC
Q psy11009 824 EASRRVKSELLVQMDGLS-------SAEDSSKVVMVLAATNF 858 (863)
Q Consensus 824 e~~~rv~~~LL~~lD~l~-------~~~~~~~~VvVIaTTN~ 858 (863)
.+++.||..|+.-. ........+++|+|+|.
T Consensus 141 ----~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np 178 (633)
T TIGR02442 141 ----HLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNP 178 (633)
T ss_pred ----HHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCC
Confidence 46788888885211 11112245788999884
No 281
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.35 E-value=2.3e-06 Score=91.79 Aligned_cols=136 Identities=12% Similarity=0.109 Sum_probs=90.0
Q ss_pred CCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC---Ccc----HHHhhccceEEEec
Q psy11009 159 SPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW---DID----EALRRRLEKRIYIP 231 (863)
Q Consensus 159 ~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~---~LD----~AllRRFD~~I~i~ 231 (863)
...+++||+|||++.+-.. ....+-...+...... ..+.|..|..|+ .+. ..+.+|+...++++
T Consensus 120 ~~~~~~vliiDe~~~l~~~--------~~~~l~~l~~~~~~~~-~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~ 190 (269)
T TIGR03015 120 AAGKRALLVVDEAQNLTPE--------LLEELRMLSNFQTDNA-KLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLG 190 (269)
T ss_pred hCCCCeEEEEECcccCCHH--------HHHHHHHHhCcccCCC-CeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCC
Confidence 3567899999999987421 1122211112211112 222223334443 222 23555999999999
Q ss_pred CCCHHHHHHHHHHHhccCCCC-----CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCC
Q psy11009 232 LPSKAGREALLKINLKEVKVD-----PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDL 306 (863)
Q Consensus 232 lPd~~~R~~IL~~~l~~~~l~-----~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~ 306 (863)
+.+.++-.+++...+...... .+-.++.|++.|.|..+. |..+|..+...+.... ..
T Consensus 191 ~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~-i~~l~~~~~~~a~~~~-----------------~~ 252 (269)
T TIGR03015 191 PLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRL-INILCDRLLLSAFLEE-----------------KR 252 (269)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccH-HHHHHHHHHHHHHHcC-----------------CC
Confidence 999999999999888543221 234578899999999766 9999999988887765 45
Q ss_pred CCCHHHHHHHHHHhc
Q psy11009 307 PVSQRDFEEALARCN 321 (863)
Q Consensus 307 ~Vt~~Df~~AL~~v~ 321 (863)
.|+.+++..++..+.
T Consensus 253 ~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 253 EIGGEEVREVIAEID 267 (269)
T ss_pred CCCHHHHHHHHHHhh
Confidence 799999999988754
No 282
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.34 E-value=1.3e-07 Score=91.63 Aligned_cols=111 Identities=10% Similarity=-0.061 Sum_probs=63.4
Q ss_pred ceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccc-----
Q psy11009 77 GNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGF----- 151 (863)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~----- 151 (863)
++|++ |.||||||.+++.+++. +..|.+.-.. .+.-...++++.+.
T Consensus 1 ~vlL~---------G~~G~GKt~l~~~la~~----~~~~~~~i~~----------------~~~~~~~dl~g~~~~~~~~ 51 (139)
T PF07728_consen 1 PVLLV---------GPPGTGKTTLARELAAL----LGRPVIRINC----------------SSDTTEEDLIGSYDPSNGQ 51 (139)
T ss_dssp EEEEE---------ESSSSSHHHHHHHHHHH----HTCEEEEEE-----------------TTTSTHHHHHCEEET-TTT
T ss_pred CEEEE---------CCCCCCHHHHHHHHHHH----hhcceEEEEe----------------ccccccccceeeeeecccc
Confidence 46788 99999999999999995 2333321111 11111222332211
Q ss_pred ---ceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhcc----------CCCCC------CeEEEEccCC
Q psy11009 152 ---YIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLL----------TFPST------PVQYSIQKGI 212 (863)
Q Consensus 152 ---~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~----------~~~~~------~VivIaATN~ 212 (863)
.-+.+..+...++|+||||++..- ..+...|+..++.- ..... ++.+|||+|.
T Consensus 52 ~~~~~~~l~~a~~~~~il~lDEin~a~--------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~ 123 (139)
T PF07728_consen 52 FEFKDGPLVRAMRKGGILVLDEINRAP--------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNP 123 (139)
T ss_dssp TCEEE-CCCTTHHEEEEEEESSCGG----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESS
T ss_pred cccccccccccccceeEEEECCcccCC--------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcC
Confidence 111122233369999999999653 33444444444211 00111 3899999999
Q ss_pred CC----CccHHHhhcc
Q psy11009 213 PW----DIDEALRRRL 224 (863)
Q Consensus 213 p~----~LD~AllRRF 224 (863)
.+ .||+||+|||
T Consensus 124 ~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 124 RDKGRKELSPALLDRF 139 (139)
T ss_dssp ST--TTTTCHHHHTT-
T ss_pred CCCCcCcCCHHHHhhC
Confidence 99 9999999998
No 283
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.34 E-value=2e-06 Score=87.87 Aligned_cols=100 Identities=20% Similarity=0.233 Sum_probs=62.5
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCc------------------------EEEEecccccccccchhHHHHHHHHH
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTT------------------------FFNVCSSTLTSKYRGESEKLVRLLFE 795 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~~------------------------~i~vs~s~l~~~~~Ge~e~~ir~lf~ 795 (863)
+.+..+||+||||+|||++|+++++.+... +..+.... ... ....++.+.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~---~~~--~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG---QSI--KVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc---CcC--CHHHHHHHHH
Confidence 344679999999999999999999997432 22222111 001 1234444555
Q ss_pred HHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 796 MARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 796 ~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.+.. ....||||||+|.+.. ..++.||..|+.. ...+++|.+||.+..|
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~------------~~~~~Ll~~le~~------~~~~~~il~~~~~~~l 139 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNE------------AAANALLKTLEEP------PPNTLFILITPSPEKL 139 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCH------------HHHHHHHHHhcCC------CCCeEEEEEECChHhC
Confidence 5443 3457999999998843 2456788888542 2345666677776554
No 284
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.33 E-value=2.2e-06 Score=95.79 Aligned_cols=122 Identities=17% Similarity=0.195 Sum_probs=78.8
Q ss_pred ccccccc-hHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc----------------
Q psy11009 707 RWDDIAE-LTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT---------------- 769 (863)
Q Consensus 707 ~~~dLiG-l~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~---------------- 769 (863)
.|+.|+| ++.+++.+...+. .++.+..+||+||+|+||+++|+++|+.+...
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 4778888 8889999988762 23444578999999999999999999987321
Q ss_pred --------EEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHH
Q psy11009 770 --------FFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQM 837 (863)
Q Consensus 770 --------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~l 837 (863)
+..+... +..+ .-..++.+.+... .....|++|||+|.+.. ...+.||+.|
T Consensus 72 ~~~~~hpD~~~i~~~---~~~i--~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~------------~a~NaLLK~L 134 (329)
T PRK08058 72 IDSGNHPDVHLVAPD---GQSI--KKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTA------------SAANSLLKFL 134 (329)
T ss_pred HhcCCCCCEEEeccc---cccC--CHHHHHHHHHHHhhCCcccCceEEEeehHhhhCH------------HHHHHHHHHh
Confidence 2222211 1101 1123344443332 23356999999988743 3567899888
Q ss_pred hcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 838 DGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 838 D~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
+ ++...+++|.+|+.|..|
T Consensus 135 E------EPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 135 E------EPSGGTTAILLTENKHQI 153 (329)
T ss_pred c------CCCCCceEEEEeCChHhC
Confidence 4 344556677777776654
No 285
>PHA02244 ATPase-like protein
Probab=98.33 E-value=3.5e-07 Score=102.45 Aligned_cols=135 Identities=12% Similarity=-0.044 Sum_probs=75.4
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccccee
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIE 154 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~ 154 (863)
+.-+||+ |.||||||++|+++++. +..|.++.. +-+ .+ +. .+|... ....|. -+
T Consensus 119 ~~PVLL~---------GppGtGKTtLA~aLA~~----lg~pfv~In-~l~--d~---~~-L~G~i~--~~g~~~----dg 172 (383)
T PHA02244 119 NIPVFLK---------GGAGSGKNHIAEQIAEA----LDLDFYFMN-AIM--DE---FE-LKGFID--ANGKFH----ET 172 (383)
T ss_pred CCCEEEE---------CCCCCCHHHHHHHHHHH----hCCCEEEEe-cCh--HH---Hh-hccccc--cccccc----ch
Confidence 4446777 99999999999999985 445544332 100 11 11 122100 000110 01
Q ss_pred eeccCCCCcEEEEEecccccccccccchhHhHHHHHHH-----HhhccCCCCCCeEEEEccCCC-----------CCccH
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIH-----KYRLLTFPSTPVQYSIQKGIP-----------WDIDE 218 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~-----~ld~~~~~~~~VivIaATN~p-----------~~LD~ 218 (863)
.+..+.....+|||||++.+... .-..++.++. .+++......++-||+|+|.+ ..|++
T Consensus 173 pLl~A~~~GgvLiLDEId~a~p~-----vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~ 247 (383)
T PHA02244 173 PFYEAFKKGGLFFIDEIDASIPE-----ALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDG 247 (383)
T ss_pred HHHHHhhcCCEEEEeCcCcCCHH-----HHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCH
Confidence 11112345679999999977532 1122222222 112221123478999999984 57899
Q ss_pred HHhhccceEEEecCCCHHHHHHHH
Q psy11009 219 ALRRRLEKRIYIPLPSKAGREALL 242 (863)
Q Consensus 219 AllRRFD~~I~i~lPd~~~R~~IL 242 (863)
|++.||- .|+++.|+..+. .|.
T Consensus 248 AllDRFv-~I~~dyp~~~E~-~i~ 269 (383)
T PHA02244 248 ATLDRFA-PIEFDYDEKIEH-LIS 269 (383)
T ss_pred HHHhhcE-EeeCCCCcHHHH-HHh
Confidence 9999994 799999984333 443
No 286
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.32 E-value=1.7e-06 Score=81.84 Aligned_cols=126 Identities=21% Similarity=0.180 Sum_probs=70.9
Q ss_pred cceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceee
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIED 155 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~ 155 (863)
..++++ |.||||||.+++.+++.-+ -...+.++.+.... ..........+.........
T Consensus 20 ~~v~i~---------G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--------- 78 (151)
T cd00009 20 KNLLLY---------GPPGTGKTTLARAIANELF-RPGAPFLYLNASDL--LEGLVVAELFGHFLVRLLFE--------- 78 (151)
T ss_pred CeEEEE---------CCCCCCHHHHHHHHHHHhh-cCCCCeEEEehhhh--hhhhHHHHHhhhhhHhHHHH---------
Confidence 356777 9999999999999988510 00222222222111 01111111111100001111
Q ss_pred eccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCC---CCCCeEEEEccCCCC--CccHHHhhccceEEEe
Q psy11009 156 YEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTF---PSTPVQYSIQKGIPW--DIDEALRRRLEKRIYI 230 (863)
Q Consensus 156 ~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~---~~~~VivIaATN~p~--~LD~AllRRFD~~I~i 230 (863)
......|++|+|||++.+.. .....++..+..... ...++.+|++||... .+++.+..||+.+|++
T Consensus 79 -~~~~~~~~~lilDe~~~~~~--------~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 79 -LAEKAKPGVLFIDEIDSLSR--------GAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVI 149 (151)
T ss_pred -hhccCCCeEEEEeChhhhhH--------HHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeec
Confidence 12345789999999998821 122344444433322 123788999999988 7999999999988887
Q ss_pred c
Q psy11009 231 P 231 (863)
Q Consensus 231 ~ 231 (863)
+
T Consensus 150 ~ 150 (151)
T cd00009 150 P 150 (151)
T ss_pred C
Confidence 6
No 287
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=2e-06 Score=97.05 Aligned_cols=170 Identities=11% Similarity=0.037 Sum_probs=103.1
Q ss_pred cceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCc-chhHHHHHHHhhhhhHHHHHHHHhhccccee
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGK-LKFKEAITLALTVGSSLNLYRSITNRGFYIE 154 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk-~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~ 154 (863)
...|+| |.||+|||++|+.+++. +..+... ..+. ..+.-. -+...-......++.+++......
T Consensus 40 ~~~L~~---------G~~G~GKt~~a~~la~~----l~~~~~~-~~~~~~~~~~~-~l~~~~~~~~~~i~~l~~~~~~~p 104 (367)
T PRK14970 40 QALLFC---------GPRGVGKTTCARILARK----INQPGYD-DPNEDFSFNIF-ELDAASNNSVDDIRNLIDQVRIPP 104 (367)
T ss_pred eEEEEE---------CCCCCCHHHHHHHHHHH----hcCCCCC-CCCCCCCcceE-EeccccCCCHHHHHHHHHHHhhcc
Confidence 456788 99999999999999885 1111110 0000 000000 000000112355667776432222
Q ss_pred eeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCC
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPS 234 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd 234 (863)
....+.||||||+|.+.. ...+.|+..++. +....++|.+||.+..|.+++.+|+. .+.++.|+
T Consensus 105 ----~~~~~kiviIDE~~~l~~--------~~~~~ll~~le~---~~~~~~~Il~~~~~~kl~~~l~sr~~-~v~~~~~~ 168 (367)
T PRK14970 105 ----QTGKYKIYIIDEVHMLSS--------AAFNAFLKTLEE---PPAHAIFILATTEKHKIIPTILSRCQ-IFDFKRIT 168 (367)
T ss_pred ----ccCCcEEEEEeChhhcCH--------HHHHHHHHHHhC---CCCceEEEEEeCCcccCCHHHHhcce-eEecCCcc
Confidence 123567999999997742 235667666644 22256677778888999999998985 68999999
Q ss_pred HHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHH
Q psy11009 235 KAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCR 277 (863)
Q Consensus 235 ~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~ 277 (863)
..+...++...+.+..+. ++-.++.|+..+.| +...+.+.+.
T Consensus 169 ~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~le 211 (367)
T PRK14970 169 IKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFD 211 (367)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 999999999888655443 23456777777653 4444444443
No 288
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.31 E-value=2.1e-06 Score=95.26 Aligned_cols=126 Identities=14% Similarity=0.147 Sum_probs=80.4
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc----------EEEEecc
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT----------FFNVCSS 776 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~----------~i~vs~s 776 (863)
.|++|+|++.+++.+...+. .++-+..+||+||+|+||+++|.++|+.+.+. +...+.+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~-----------~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK-----------QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 47899999999999999873 12334689999999999999999999987321 1111122
Q ss_pred cccccc-----cch--------------------hHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHH
Q psy11009 777 TLTSKY-----RGE--------------------SEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASR 827 (863)
Q Consensus 777 ~l~~~~-----~Ge--------------------~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~ 827 (863)
++.--. -|. .-..++.+.+.+.. ....|++||++|.+..
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~------------ 138 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE------------ 138 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH------------
Confidence 211000 010 01234555444432 3457999999988843
Q ss_pred HHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 828 RVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 828 rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
...+.||+.|+. +. +.++|..|+.|+.|
T Consensus 139 ~aaNaLLK~LEE------Pp-~~~fILi~~~~~~L 166 (314)
T PRK07399 139 AAANALLKTLEE------PG-NGTLILIAPSPESL 166 (314)
T ss_pred HHHHHHHHHHhC------CC-CCeEEEEECChHhC
Confidence 256788888853 33 34566677777654
No 289
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.30 E-value=1.9e-06 Score=104.35 Aligned_cols=131 Identities=22% Similarity=0.264 Sum_probs=85.2
Q ss_pred CCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccc
Q psy11009 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTS 780 (863)
Q Consensus 704 p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~ 780 (863)
+..+|++++|.+...+.+.+.+. .......+|||+|++||||+++|++|.... +.||+.++|..+..
T Consensus 320 ~~~~~~~l~g~s~~~~~~~~~~~----------~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~ 389 (638)
T PRK11388 320 VSHTFDHMPQDSPQMRRLIHFGR----------QAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD 389 (638)
T ss_pred ccccccceEECCHHHHHHHHHHH----------HHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh
Confidence 34578999999998888877663 222233569999999999999999998775 47999999987642
Q ss_pred c-----ccchh----HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC-----CCCCC
Q psy11009 781 K-----YRGES----EKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS-----SAEDS 846 (863)
Q Consensus 781 ~-----~~Ge~----e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~-----~~~~~ 846 (863)
. +.|.. .......|+. ...++||||||+.+.. .++..|+..++.-. .....
T Consensus 390 ~~~~~elfg~~~~~~~~~~~g~~~~---a~~GtL~ldei~~l~~------------~~Q~~Ll~~l~~~~~~~~~~~~~~ 454 (638)
T PRK11388 390 EALAEEFLGSDRTDSENGRLSKFEL---AHGGTLFLEKVEYLSP------------ELQSALLQVLKTGVITRLDSRRLI 454 (638)
T ss_pred HHHHHHhcCCCCcCccCCCCCceeE---CCCCEEEEcChhhCCH------------HHHHHHHHHHhcCcEEeCCCCceE
Confidence 1 11111 0000001222 2478999999998844 36677777775321 11111
Q ss_pred CCceEEEEecCCC
Q psy11009 847 SKVVMVLAATNFP 859 (863)
Q Consensus 847 ~~~VvVIaTTN~P 859 (863)
.-.+.||+|||..
T Consensus 455 ~~~~riI~~t~~~ 467 (638)
T PRK11388 455 PVDVRVIATTTAD 467 (638)
T ss_pred EeeEEEEEeccCC
Confidence 1247799999874
No 290
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.30 E-value=7.6e-07 Score=90.96 Aligned_cols=70 Identities=26% Similarity=0.432 Sum_probs=46.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchh-HHHHHHHHHHHHhCCCeEEEEcCCCcc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGES-EKLVRLLFEMARFYAPSTIFIDEIDSL 813 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~-e~~ir~lf~~A~~~~p~ILfIDEID~l 813 (863)
..|++|+||||||||+||.+++.++ |.++.+++.+++........ .......+.. .....+|+|||+...
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~--l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKR--LKRVDLLILDDLGYE 120 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHH--HHTSSCEEEETCTSS
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCc--cccccEeccccccee
Confidence 4699999999999999999999886 88999999988765432210 0111122222 234679999999644
No 291
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.29 E-value=6.4e-07 Score=101.75 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=62.0
Q ss_pred cEEEEEeccccccccccc---chh-HhHHHHHHHHhhccC-------CCCCCeEEEEcc----CCCCCccHHHhhccceE
Q psy11009 163 PTLAVAKMFSSLAVQKLL---RGS-KTFRTLCIHKYRLLT-------FPSTPVQYSIQK----GIPWDIDEALRRRLEKR 227 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~---~~~-~~v~n~lL~~ld~~~-------~~~~~VivIaAT----N~p~~LD~AllRRFD~~ 227 (863)
--||||||||.|+.+..+ +.+ .-|...||..|.|-. -..++|++|++= ..|.+|-|.|.-||..+
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 329 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIR 329 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 349999999999976532 222 347888888886632 113489999874 34888889999999999
Q ss_pred EEecCCCHHHHHHHH
Q psy11009 228 IYIPLPSKAGREALL 242 (863)
Q Consensus 228 I~i~lPd~~~R~~IL 242 (863)
+++...+.+.-..||
T Consensus 330 v~L~~L~~~dL~~IL 344 (443)
T PRK05201 330 VELDALTEEDFVRIL 344 (443)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999999888
No 292
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.29 E-value=2.6e-06 Score=87.04 Aligned_cols=105 Identities=9% Similarity=0.043 Sum_probs=72.5
Q ss_pred HHHHHHhhcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHH
Q psy11009 141 NLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEAL 220 (863)
Q Consensus 141 ~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~Al 220 (863)
..+|.+++...... .....-||+|||+|.+-. ...+.||..|+.. ...+++|.+||.++.|++++
T Consensus 79 ~~i~~i~~~~~~~~----~~~~~kviiide~~~l~~--------~~~~~Ll~~le~~---~~~~~~il~~~~~~~l~~~i 143 (188)
T TIGR00678 79 DQVRELVEFLSRTP----QESGRRVVIIEDAERMNE--------AAANALLKTLEEP---PPNTLFILITPSPEKLLPTI 143 (188)
T ss_pred HHHHHHHHHHccCc----ccCCeEEEEEechhhhCH--------HHHHHHHHHhcCC---CCCeEEEEEECChHhChHHH
Confidence 45666665433222 124567999999998843 3456677777542 23567777788889999999
Q ss_pred hhccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCC
Q psy11009 221 RRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDG 266 (863)
Q Consensus 221 lRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG 266 (863)
..|.. .+.+++|+.++...+++.. .++ +..+..++..+.|
T Consensus 144 ~sr~~-~~~~~~~~~~~~~~~l~~~----gi~-~~~~~~i~~~~~g 183 (188)
T TIGR00678 144 RSRCQ-VLPFPPLSEEALLQWLIRQ----GIS-EEAAELLLALAGG 183 (188)
T ss_pred HhhcE-EeeCCCCCHHHHHHHHHHc----CCC-HHHHHHHHHHcCC
Confidence 99995 8999999999999998876 122 2335666666654
No 293
>PRK06921 hypothetical protein; Provisional
Probab=98.29 E-value=3.9e-06 Score=91.08 Aligned_cols=68 Identities=24% Similarity=0.361 Sum_probs=46.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh----CCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC----GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDS 812 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el----~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~ 812 (863)
..+++|+||||||||+|+.|||+++ +..+++++..++........ ........ ......+|+|||++.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~-~~~~~~~~--~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDF-DLLEAKLN--RMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHH-HHHHHHHH--HhcCCCEEEEecccc
Confidence 4689999999999999999999986 57788888766544322111 11111111 234578999999944
No 294
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=5.5e-06 Score=99.46 Aligned_cols=168 Identities=13% Similarity=0.078 Sum_probs=108.8
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcchhHHHHHHH------h-hhhh---HHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKFKEAITLA------L-TVGS---SLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~~e~~~~~------~-~vg~---se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||||||++|+.++| +|+-.. . ...--|++. .|-...+ . +-+. ....+|.+++...|-. .
T Consensus 45 Gp~GvGKTTlAr~lAk~L~c~~~--~-~~~pCg~C~-~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p----~ 116 (647)
T PRK07994 45 GTRGVGKTTIARLLAKGLNCETG--I-TATPCGECD-NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAP----A 116 (647)
T ss_pred CCCCCCHHHHHHHHHHhhhhccC--C-CCCCCCCCH-HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhh----h
Confidence 9999999999999999 444211 0 001122221 1100000 0 0111 2345777776643322 3
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
..+.-|+||||+|.+- ....|.||.-|.. +..++++|.+|+.++.|-+.++.|. .+|+|..++.++-.
T Consensus 117 ~g~~KV~IIDEah~Ls--------~~a~NALLKtLEE---Pp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~ 184 (647)
T PRK07994 117 RGRFKVYLIDEVHMLS--------RHSFNALLKTLEE---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIR 184 (647)
T ss_pred cCCCEEEEEechHhCC--------HHHHHHHHHHHHc---CCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHH
Confidence 3456799999999884 3456778777653 3347888888999999999988896 88999999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
..|+..+....+. .+-.+..||..+.| +..+.-+++..|
T Consensus 185 ~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~lldqa 224 (647)
T PRK07994 185 QQLEHILQAEQIPFEPRALQLLARAADG-SMRDALSLTDQA 224 (647)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999888543333 23446778888776 566666666544
No 295
>KOG0990|consensus
Probab=98.28 E-value=6e-07 Score=97.52 Aligned_cols=133 Identities=18% Similarity=0.140 Sum_probs=87.5
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc------E
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------F 770 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------~ 770 (863)
..|+++|++..+.|+++.+++...+.++.. ..+.| +.|+|||||||||+...+.|..+-.+ +
T Consensus 29 ~pwvekyrP~~l~dv~~~~ei~st~~~~~~----------~~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~ 96 (360)
T KOG0990|consen 29 QPWVEKYRPPFLGIVIKQEPIWSTENRYSG----------MPGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSML 96 (360)
T ss_pred CCCccCCCCchhhhHhcCCchhhHHHHhcc----------CCCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHH
Confidence 358999999999999999999998888642 12233 99999999999999999999998543 2
Q ss_pred EEEecccccccccchhHHHHHHHHHHHHh-------CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCC
Q psy11009 771 FNVCSSTLTSKYRGESEKLVRLLFEMARF-------YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSA 843 (863)
Q Consensus 771 i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~-------~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~ 843 (863)
.++++++-.+. ...+.--..|..++. ..+..+++||+|++... .+++|-..++.+..
T Consensus 97 lelnaSd~rgi---d~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~------------AQnALRRviek~t~- 160 (360)
T KOG0990|consen 97 LELNASDDRGI---DPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRD------------AQNALRRVIEKYTA- 160 (360)
T ss_pred HHhhccCccCC---cchHHHHHHHHhhccceeccccCceeEEEecchhHhhHH------------HHHHHHHHHHHhcc-
Confidence 33444432221 112222345555552 26789999999998552 33444444443322
Q ss_pred CCCCCceEEEEecCCCCCC
Q psy11009 844 EDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 844 ~~~~~~VvVIaTTN~P~~I 862 (863)
.+.++.-.|+|..|
T Consensus 161 -----n~rF~ii~n~~~ki 174 (360)
T KOG0990|consen 161 -----NTRFATISNPPQKI 174 (360)
T ss_pred -----ceEEEEeccChhhc
Confidence 24455666776554
No 296
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.9e-06 Score=100.40 Aligned_cols=168 Identities=14% Similarity=0.067 Sum_probs=106.5
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHHh----------hhhhHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLAL----------TVGSSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~~----------~vg~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||+|||++|+.++|. |+-.. + -..--|++. .|-...+. .-.-....+|.+++...+.- .
T Consensus 45 Gp~G~GKTt~A~~lAk~l~c~~~--~-~~~pcg~C~-~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p----~ 116 (527)
T PRK14969 45 GTRGVGKTTLARILAKSLNCETG--V-TATPCGVCS-ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAP----T 116 (527)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCC--C-CCCCCCCCH-HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCc----c
Confidence 99999999999999994 33111 0 001122221 11110000 00112345777776543322 3
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
..+..|++|||+|.+-. ...|.||..|.. +...+++|.+|+.++.+-+.++.|. ..++|..|+.++-.
T Consensus 117 ~~~~kVvIIDEad~ls~--------~a~naLLK~LEe---pp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~ 184 (527)
T PRK14969 117 RGRFKVYIIDEVHMLSK--------SAFNAMLKTLEE---PPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIV 184 (527)
T ss_pred cCCceEEEEcCcccCCH--------HHHHHHHHHHhC---CCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHH
Confidence 44567999999998742 345777777754 3336788888888888888877788 78999999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
..+...+++..+. .+..+..|+..+.| +..++.+++..+
T Consensus 185 ~~L~~il~~egi~~~~~al~~la~~s~G-slr~al~lldqa 224 (527)
T PRK14969 185 SHLQHILEQENIPFDATALQLLARAAAG-SMRDALSLLDQA 224 (527)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9888888544333 23346777877764 566666666655
No 297
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.28 E-value=7.9e-07 Score=82.99 Aligned_cols=128 Identities=14% Similarity=0.013 Sum_probs=70.0
Q ss_pred CcCCCcccccccccccccchhcccc---hhhhccCcchhH-------HHHHHHhhhhhHHHHHHHHhhcccceeeeccCC
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLP---LLAEEHGKLKFK-------EAITLALTVGSSLNLYRSITNRGFYIEDYEVSP 160 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~---~l~~~~gk~s~~-------e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~ 160 (863)
|.||||||++++.+++. +..+ .++......... ................+.++..+ ..
T Consensus 9 G~~G~GKTtl~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~ 76 (148)
T smart00382 9 GPPGSGKTTLARALARE----LGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA--------RK 76 (148)
T ss_pred CCCCCcHHHHHHHHHhc----cCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH--------Hh
Confidence 89999999999999884 2221 222111111000 01111222334455566666654 22
Q ss_pred CCcEEEEEecccccccccccchhHhHH-HHHHHHhhccCCCCCCeEEEEccCC-CCCccHHHhhccceEEEecCCC
Q psy11009 161 PGPTLAVAKMFSSLAVQKLLRGSKTFR-TLCIHKYRLLTFPSTPVQYSIQKGI-PWDIDEALRRRLEKRIYIPLPS 234 (863)
Q Consensus 161 ~~P~IlFiDEiDal~~~R~~~~~~~v~-n~lL~~ld~~~~~~~~VivIaATN~-p~~LD~AllRRFD~~I~i~lPd 234 (863)
..|+||||||++.+............. ....... ....+..+|+|+|. ...++..+.+||+.++.++.|+
T Consensus 77 ~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (148)
T smart00382 77 LKPDVLILDEITSLLDAEQEALLLLLEELRLLLLL----KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148 (148)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHH----HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCCC
Confidence 237999999999998654221000000 0011111 11225788889997 4555555666999999997663
No 298
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.28 E-value=5.4e-06 Score=83.36 Aligned_cols=118 Identities=23% Similarity=0.269 Sum_probs=75.2
Q ss_pred chHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC-----------------------c
Q psy11009 713 ELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT-----------------------T 769 (863)
Q Consensus 713 Gl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~-----------------------~ 769 (863)
|++.+.+.|...+. .++.+..+||+||+|+||+++|+++|+.+-. .
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 67888888887662 2234457999999999999999999998732 2
Q ss_pred EEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCC
Q psy11009 770 FFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAED 845 (863)
Q Consensus 770 ~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~ 845 (863)
++.+....... .. ....++.+...... ...-|++|||+|.+.. ...+.||+.|+ +
T Consensus 70 ~~~~~~~~~~~-~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~------------~a~NaLLK~LE------e 128 (162)
T PF13177_consen 70 FIIIKPDKKKK-SI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTE------------EAQNALLKTLE------E 128 (162)
T ss_dssp EEEEETTTSSS-SB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-H------------HHHHHHHHHHH------S
T ss_pred eEEEecccccc-hh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhH------------HHHHHHHHHhc------C
Confidence 23332222100 01 12344555554432 3466999999998844 47889999995 3
Q ss_pred CCCceEEEEecCCCCCC
Q psy11009 846 SSKVVMVLAATNFPWEG 862 (863)
Q Consensus 846 ~~~~VvVIaTTN~P~~I 862 (863)
+...+++|.+|+.+..|
T Consensus 129 pp~~~~fiL~t~~~~~i 145 (162)
T PF13177_consen 129 PPENTYFILITNNPSKI 145 (162)
T ss_dssp TTTTEEEEEEES-GGGS
T ss_pred CCCCEEEEEEECChHHC
Confidence 45567888888877654
No 299
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.27 E-value=5.8e-06 Score=99.00 Aligned_cols=170 Identities=13% Similarity=0.041 Sum_probs=106.7
Q ss_pred CcCCCccccccccccc-ccchhc---ccchhhhccCcchhHHHHH--------HHhhh--hhHHHHHHHHhhcccceeee
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSL---VLPLLAEEHGKLKFKEAIT--------LALTV--GSSLNLYRSITNRGFYIEDY 156 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~---~~~~l~~~~gk~s~~e~~~--------~~~~v--g~se~~~r~i~~~~~~l~~~ 156 (863)
|.+|||||++|+.++| +|+-.- .++. ..--|++ -.|-.+ +.+.- ......+|.+++...|..
T Consensus 45 Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~-~~pCg~C-~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p-- 120 (618)
T PRK14951 45 GTRGVGKTTVSRILAKSLNCQGPDGQGGIT-ATPCGVC-QACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKP-- 120 (618)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcccccCCC-CCCCCcc-HHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCc--
Confidence 9999999999999999 554210 1100 0001111 001000 01100 012345777776543322
Q ss_pred ccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHH
Q psy11009 157 EVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKA 236 (863)
Q Consensus 157 ~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~ 236 (863)
...+--|++|||+|.+-. .-.|.||.-|. .+...+++|.+|+.+..|-+.++.|. .+|+|..++.+
T Consensus 121 --~~g~~KV~IIDEvh~Ls~--------~a~NaLLKtLE---EPP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~e 186 (618)
T PRK14951 121 --VQGRFKVFMIDEVHMLTN--------TAFNAMLKTLE---EPPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPE 186 (618)
T ss_pred --ccCCceEEEEEChhhCCH--------HHHHHHHHhcc---cCCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHH
Confidence 233446999999998743 23566766554 34346788888888999988888898 78999999999
Q ss_pred HHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 237 GREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 237 ~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
+...+|+..+.+..+. .+-.+..|++.+.| +..++.+++..+
T Consensus 187 ei~~~L~~i~~~egi~ie~~AL~~La~~s~G-slR~al~lLdq~ 229 (618)
T PRK14951 187 TVLEHLTQVLAAENVPAEPQALRLLARAARG-SMRDALSLTDQA 229 (618)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999999888654443 23347788888876 777777766544
No 300
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.27 E-value=5e-06 Score=98.09 Aligned_cols=77 Identities=10% Similarity=0.027 Sum_probs=56.8
Q ss_pred cEEEEEecccccccccccchhHhHHHHHHHHhhccC----------CCCCCeEEEEccCCCC-------------CccHH
Q psy11009 163 PTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT----------FPSTPVQYSIQKGIPW-------------DIDEA 219 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~----------~~~~~VivIaATN~p~-------------~LD~A 219 (863)
.-|+||||+|.+- ......|+..|..-. ....+..||||+|-.+ .|+++
T Consensus 301 ~Gil~iDEi~~l~--------~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~ 372 (509)
T smart00350 301 NGVCCIDEFDKMD--------DSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAP 372 (509)
T ss_pred CCEEEEechhhCC--------HHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChH
Confidence 3499999999874 234555666662211 1124789999999653 69999
Q ss_pred HhhccceEEEe-cCCCHHHHHHHHHHHhc
Q psy11009 220 LRRRLEKRIYI-PLPSKAGREALLKINLK 247 (863)
Q Consensus 220 llRRFD~~I~i-~lPd~~~R~~IL~~~l~ 247 (863)
++.|||..+.+ +.||.+.+.+|.++.+.
T Consensus 373 lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 373 ILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred HhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 99999997666 79999999999988653
No 301
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.26 E-value=1e-06 Score=85.76 Aligned_cols=107 Identities=26% Similarity=0.396 Sum_probs=66.4
Q ss_pred cchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC---CcEEEEecccccccccchhHH
Q psy11009 712 AELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG---TTFFNVCSSTLTSKYRGESEK 788 (863)
Q Consensus 712 iGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~---~~~i~vs~s~l~~~~~Ge~e~ 788 (863)
+|.....+++.+.+. ........|||+|+|||||+++|+++....+ .+|+.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~----------~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~--------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLE----------RLAKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP--------- 61 (138)
T ss_dssp --SCHHHHHHHHHHH----------HHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC---------
T ss_pred CCCCHHHHHHHHHHH----------HHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc---------
Confidence 355555666666552 1122335799999999999999999988774 366666665543
Q ss_pred HHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 789 LVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 789 ~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
..+++.+ .+++|||+|||.+.. ..+..|+..++... ...+.+|+++..+
T Consensus 62 --~~~l~~a---~~gtL~l~~i~~L~~------------~~Q~~L~~~l~~~~-----~~~~RlI~ss~~~ 110 (138)
T PF14532_consen 62 --AELLEQA---KGGTLYLKNIDRLSP------------EAQRRLLDLLKRQE-----RSNVRLIASSSQD 110 (138)
T ss_dssp --HHHHHHC---TTSEEEEECGCCS-H------------HHHHHHHHHHHHCT-----TTTSEEEEEECC-
T ss_pred --HHHHHHc---CCCEEEECChHHCCH------------HHHHHHHHHHHhcC-----CCCeEEEEEeCCC
Confidence 3344444 688999999999844 24555666665432 2235677777654
No 302
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.26 E-value=5e-06 Score=93.06 Aligned_cols=76 Identities=7% Similarity=-0.069 Sum_probs=57.9
Q ss_pred cEEEEEecccccccccccchhHhHHHHHHHHhh-cc--------C-CCCCCeEEEEccCCCC-CccHHHhhccceEEEec
Q psy11009 163 PTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR-LL--------T-FPSTPVQYSIQKGIPW-DIDEALRRRLEKRIYIP 231 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld-~~--------~-~~~~~VivIaATN~p~-~LD~AllRRFD~~I~i~ 231 (863)
.-+||+||++.+- ..+.+.|+..|+ +. . ....++++|+++|-.+ .|.++++.||..++.++
T Consensus 132 ~GvL~lDEi~~L~--------~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~ 203 (337)
T TIGR02030 132 RGILYIDEVNLLE--------DHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIR 203 (337)
T ss_pred CCEEEecChHhCC--------HHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECC
Confidence 3599999999874 345566776663 21 1 1134789999999655 79999999999999999
Q ss_pred CCCH-HHHHHHHHHHh
Q psy11009 232 LPSK-AGREALLKINL 246 (863)
Q Consensus 232 lPd~-~~R~~IL~~~l 246 (863)
.|+. ++|.+|++...
T Consensus 204 ~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 204 TVRDVELRVEIVERRT 219 (337)
T ss_pred CCCCHHHHHHHHHhhh
Confidence 9975 89999998854
No 303
>KOG2028|consensus
Probab=98.25 E-value=3.5e-06 Score=92.66 Aligned_cols=183 Identities=13% Similarity=0.069 Sum_probs=112.4
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEe
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAK 169 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiD 169 (863)
|.||||||.+|+.+++- .=-|+...+| -.+-...+-+|+||+.+...-.+....+ |||||
T Consensus 169 GppG~GKTtlArlia~tsk~~Syrfvel----------------SAt~a~t~dvR~ife~aq~~~~l~krkT---ilFiD 229 (554)
T KOG2028|consen 169 GPPGTGKTTLARLIASTSKKHSYRFVEL----------------SATNAKTNDVRDIFEQAQNEKSLTKRKT---ILFID 229 (554)
T ss_pred cCCCCchHHHHHHHHhhcCCCceEEEEE----------------eccccchHHHHHHHHHHHHHHhhhccee---EEEeH
Confidence 99999999999999872 0011222233 1244556789999988765555555555 99999
Q ss_pred cccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEcc--CCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhc
Q psy11009 170 MFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQK--GIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLK 247 (863)
Q Consensus 170 EiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaAT--N~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~ 247 (863)
|+-.|-+.- ...||..+ + ...|++|||| |--..|..||+.|--..+. ..-....-..||.+-+.
T Consensus 230 EiHRFNksQ--------QD~fLP~V---E--~G~I~lIGATTENPSFqln~aLlSRC~VfvL-ekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 230 EIHRFNKSQ--------QDTFLPHV---E--NGDITLIGATTENPSFQLNAALLSRCRVFVL-EKLPVNAVVTILMRAIA 295 (554)
T ss_pred Hhhhhhhhh--------hhccccee---c--cCceEEEecccCCCccchhHHHHhccceeEe-ccCCHHHHHHHHHHHHH
Confidence 998774321 12344433 1 1258899887 4456899999998754444 44456666677766332
Q ss_pred ---cC-----CCC------CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHH
Q psy11009 248 ---EV-----KVD------PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDF 313 (863)
Q Consensus 248 ---~~-----~l~------~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df 313 (863)
+. ++. .+--++.||..++|=.-+-|..+=-.+.+.+-|.+.. .+.+++.+|+
T Consensus 296 ~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~m~~tr~g~~--------------~~~~lSidDv 361 (554)
T KOG2028|consen 296 SLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLSMFCTRSGQS--------------SRVLLSIDDV 361 (554)
T ss_pred hhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHhhcCCc--------------ccceecHHHH
Confidence 11 111 1122678999998866655554433333444444321 2558899999
Q ss_pred HHHHHHh
Q psy11009 314 EEALARC 320 (863)
Q Consensus 314 ~~AL~~v 320 (863)
.+.|.+-
T Consensus 362 ke~lq~s 368 (554)
T KOG2028|consen 362 KEGLQRS 368 (554)
T ss_pred HHHHhhc
Confidence 8888654
No 304
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=7.3e-06 Score=101.20 Aligned_cols=167 Identities=11% Similarity=0.042 Sum_probs=105.7
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcchhHHHHHHHh---------hhhh---HHHHHHHHhhcccceeeec
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKFKEAITLAL---------TVGS---SLNLYRSITNRGFYIEDYE 157 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~~e~~~~~~---------~vg~---se~~~r~i~~~~~~l~~~~ 157 (863)
|.+|||||++|+.++| +|+. .+|... --|++. .|-..... +-+. ....+|.+.++.+|-.
T Consensus 44 Gp~G~GKTt~A~~lAr~L~C~--~~~~~~-pCg~C~-sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p--- 116 (824)
T PRK07764 44 GPRGCGKTSSARILARSLNCV--EGPTST-PCGECD-SCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAP--- 116 (824)
T ss_pred CCCCCCHHHHHHHHHHHhCcc--cCCCCC-CCcccH-HHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhch---
Confidence 9999999999999999 5443 232210 112210 01110000 0111 2345666665543221
Q ss_pred cCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHH
Q psy11009 158 VSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAG 237 (863)
Q Consensus 158 ~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~ 237 (863)
...+..|+||||+|.|- ..-.|.||..|.... ..+++|.+|+.++.|-+.|..|. .+|+|.+++.+.
T Consensus 117 -~~~~~KV~IIDEad~lt--------~~a~NaLLK~LEEpP---~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~ 183 (824)
T PRK07764 117 -AESRYKIFIIDEAHMVT--------PQGFNALLKIVEEPP---EHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEV 183 (824)
T ss_pred -hcCCceEEEEechhhcC--------HHHHHHHHHHHhCCC---CCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHH
Confidence 34456799999999884 345677877776543 36788888899998988888787 578899999999
Q ss_pred HHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHH
Q psy11009 238 REALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRD 278 (863)
Q Consensus 238 R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~ 278 (863)
...+|+..+++..+. .+..+..|++.+.| +-.++.+++..
T Consensus 184 l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~Al~eLEK 224 (824)
T PRK07764 184 MRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRDSLSVLDQ 224 (824)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHH
Confidence 999999888654443 23345667777765 55555555544
No 305
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.24 E-value=5.3e-06 Score=92.76 Aligned_cols=148 Identities=14% Similarity=0.047 Sum_probs=95.2
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEec
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKM 170 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDE 170 (863)
|+||||||++|..+|+. .+.+-.. ++ .|=...+.+|.||+++...- ...+-.|||+||
T Consensus 55 GPPG~GKTTlA~liA~~----~~~~f~~-------------~s-Av~~gvkdlr~i~e~a~~~~----~~gr~tiLflDE 112 (436)
T COG2256 55 GPPGTGKTTLARLIAGT----TNAAFEA-------------LS-AVTSGVKDLREIIEEARKNR----LLGRRTILFLDE 112 (436)
T ss_pred CCCCCCHHHHHHHHHHh----hCCceEE-------------ec-cccccHHHHHHHHHHHHHHH----hcCCceEEEEeh
Confidence 99999999999999995 2322221 11 25567888999999862221 235678999999
Q ss_pred ccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEcc--CCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHh--
Q psy11009 171 FSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQK--GIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINL-- 246 (863)
Q Consensus 171 iDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaAT--N~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l-- 246 (863)
+-.|-+.- .-.||..|. . ..|++|||| |--..|-+||+.|-. .+++..-+.++...+++.-+
T Consensus 113 IHRfnK~Q--------QD~lLp~vE---~--G~iilIGATTENPsF~ln~ALlSR~~-vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 113 IHRFNKAQ--------QDALLPHVE---N--GTIILIGATTENPSFELNPALLSRAR-VFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred hhhcChhh--------hhhhhhhhc---C--CeEEEEeccCCCCCeeecHHHhhhhh-eeeeecCCHHHHHHHHHHHHhh
Confidence 98774321 234666652 1 258888886 445699999999864 45666668888888888733
Q ss_pred ccCCCC------CcccHHHHhhhCCCCCHHHHHHHHHH
Q psy11009 247 KEVKVD------PAVDLTHIASQLDGYSGADITNVCRD 278 (863)
Q Consensus 247 ~~~~l~------~dvdl~~LA~~TeG~SGADI~~lv~~ 278 (863)
....+. ++.-++.|+..+ .+|.+.+++.
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s----~GD~R~aLN~ 212 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLS----NGDARRALNL 212 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhc----CchHHHHHHH
Confidence 222232 112244455555 4566666543
No 306
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=5.6e-06 Score=97.95 Aligned_cols=137 Identities=14% Similarity=0.024 Sum_probs=98.5
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHh---hhhhHHHHHHHHhhcccceeeeccCCCCcEEEE
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLAL---TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAV 167 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~---~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlF 167 (863)
|+||.|||.++|+||+- ++=+-+|-..|=+ -|||.+=.. |||+--.++-+...++ ....| |++
T Consensus 357 GPPGVGKTSLgkSIA~a----l~RkfvR~sLGGv-rDEAEIRGHRRTYIGamPGrIiQ~mkka--------~~~NP-v~L 422 (782)
T COG0466 357 GPPGVGKTSLGKSIAKA----LGRKFVRISLGGV-RDEAEIRGHRRTYIGAMPGKIIQGMKKA--------GVKNP-VFL 422 (782)
T ss_pred CCCCCCchhHHHHHHHH----hCCCEEEEecCcc-ccHHHhccccccccccCChHHHHHHHHh--------CCcCC-eEE
Confidence 99999999999999994 3333344333433 355555443 8999988888888764 33344 667
Q ss_pred EecccccccccccchhHhHHHHHHHHhhccCC------------CCCCeEEEEccCCCCCccHHHhhccceEEEecCCCH
Q psy11009 168 AKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTF------------PSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSK 235 (863)
Q Consensus 168 iDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~------------~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~ 235 (863)
+||+|.++..=..+.+ +.||+-||--.. .=.+|++|+|.|..+.|..+|+-|++ .|+++-=..
T Consensus 423 LDEIDKm~ss~rGDPa----SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRME-iI~lsgYt~ 497 (782)
T COG0466 423 LDEIDKMGSSFRGDPA----SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRME-VIRLSGYTE 497 (782)
T ss_pred eechhhccCCCCCChH----HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhccee-eeeecCCCh
Confidence 9999999864322222 345554442111 11289999999999999999999997 588888899
Q ss_pred HHHHHHHHHHh
Q psy11009 236 AGREALLKINL 246 (863)
Q Consensus 236 ~~R~~IL~~~l 246 (863)
.+..+|-+.||
T Consensus 498 ~EKl~IAk~~L 508 (782)
T COG0466 498 DEKLEIAKRHL 508 (782)
T ss_pred HHHHHHHHHhc
Confidence 99999999998
No 307
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=5.4e-06 Score=92.59 Aligned_cols=103 Identities=20% Similarity=0.246 Sum_probs=68.2
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCC------------------------cEEEEecccccccccchhHHHHHHHH
Q psy11009 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGT------------------------TFFNVCSSTLTSKYRGESEKLVRLLF 794 (863)
Q Consensus 739 ~~p~kgvLL~GPPGtGKT~LAraIA~el~~------------------------~~i~vs~s~l~~~~~Ge~e~~ir~lf 794 (863)
++.+..+||+||+|+|||++|+++|+.+.+ .++.+.+..- ++.+ .-..+|.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~~i--~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DKTI--KVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CCCC--CHHHHHHHH
Confidence 455568999999999999999999999843 2233322110 0101 123445554
Q ss_pred HHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 795 EMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 795 ~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
+.+. .....|++||++|.+.. ...+.||+.|+ ++...+++|.+|+.|..|
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~------------~aaNaLLK~LE------EPp~~~~fiL~t~~~~~l 149 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNR------------NAANALLKSLE------EPSGDTVLLLISHQPSRL 149 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCH------------HHHHHHHHHHh------CCCCCeEEEEEECChhhC
Confidence 4443 24466999999998844 36788999884 344567888999888765
No 308
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.22 E-value=8.3e-06 Score=97.63 Aligned_cols=176 Identities=14% Similarity=0.046 Sum_probs=112.0
Q ss_pred cceeEeeecccccccCcCCCccccccccccc-ccchhcc---cchhhhccCcchhHHHHHHHh-------hhhh---HHH
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK-MNFLSLV---LPLLAEEHGKLKFKEAITLAL-------TVGS---SLN 141 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~---~~~l~~~~gk~s~~e~~~~~~-------~vg~---se~ 141 (863)
-..|++ |++|+|||++|+.+++ +|+.... +|-+. --|.+ -.|-...+. +-+. ...
T Consensus 47 ha~L~~---------Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~-~cg~c-~~C~~i~~g~h~Dv~e~~a~s~~gvd 115 (598)
T PRK09111 47 QAFMLT---------GVRGVGKTTTARILARALNYEGPDGDGGPTID-LCGVG-EHCQAIMEGRHVDVLEMDAASHTGVD 115 (598)
T ss_pred ceEEEE---------CCCCCCHHHHHHHHHHhhCcCCccccCCCccc-cCccc-HHHHHHhcCCCCceEEecccccCCHH
Confidence 356777 9999999999999999 5544321 22110 01111 112111110 0011 134
Q ss_pred HHHHHhhcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHh
Q psy11009 142 LYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALR 221 (863)
Q Consensus 142 ~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~All 221 (863)
.+|.|++...+.. .....-|++|||+|.+- ..-.|.||.-|.. +...+++|.+|+.++.|-+.+.
T Consensus 116 ~IReIie~~~~~P----~~a~~KVvIIDEad~Ls--------~~a~naLLKtLEe---Pp~~~~fIl~tte~~kll~tI~ 180 (598)
T PRK09111 116 DIREIIESVRYRP----VSARYKVYIIDEVHMLS--------TAAFNALLKTLEE---PPPHVKFIFATTEIRKVPVTVL 180 (598)
T ss_pred HHHHHHHHHHhch----hcCCcEEEEEEChHhCC--------HHHHHHHHHHHHh---CCCCeEEEEEeCChhhhhHHHH
Confidence 6778887654433 23455799999999884 2345777766654 3335777777888888888877
Q ss_pred hccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 222 RRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 222 RRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.|.. +|.|..|+..+...+++..+++.... .+-.++.|+..+.| +..++.+.+..+
T Consensus 181 SRcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-dlr~al~~Ldkl 237 (598)
T PRK09111 181 SRCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-SVRDGLSLLDQA 237 (598)
T ss_pred hhee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 7984 69999999999999999988655443 23446777888865 667777666554
No 309
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.19 E-value=3.7e-06 Score=94.07 Aligned_cols=47 Identities=30% Similarity=0.404 Sum_probs=39.3
Q ss_pred cccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 708 WDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 708 ~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
|..|+|+++++..+.-.+..| ...+++|.|+||+|||+++++++..+
T Consensus 3 f~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred ccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 788999999999887655422 13589999999999999999999877
No 310
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.19 E-value=2.1e-05 Score=88.30 Aligned_cols=76 Identities=7% Similarity=-0.043 Sum_probs=58.5
Q ss_pred cEEEEEecccccccccccchhHhHHHHHHHHhhc---------cC-CCCCCeEEEEccCCCC-CccHHHhhccceEEEec
Q psy11009 163 PTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRL---------LT-FPSTPVQYSIQKGIPW-DIDEALRRRLEKRIYIP 231 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~---------~~-~~~~~VivIaATN~p~-~LD~AllRRFD~~I~i~ 231 (863)
-.|||+||++.+-. .+.+.|+..|+. .. ....++++|++.|-.+ .+.++++.||..+|.++
T Consensus 145 ~GiL~lDEInrL~~--------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~ 216 (350)
T CHL00081 145 RGILYVDEVNLLDD--------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIR 216 (350)
T ss_pred CCEEEecChHhCCH--------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecC
Confidence 34999999998853 445567766632 11 1234789999888766 69999999999999999
Q ss_pred CCC-HHHHHHHHHHHh
Q psy11009 232 LPS-KAGREALLKINL 246 (863)
Q Consensus 232 lPd-~~~R~~IL~~~l 246 (863)
.|+ .+.|.+|++...
T Consensus 217 ~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 217 TVKDPELRVKIVEQRT 232 (350)
T ss_pred CCCChHHHHHHHHhhh
Confidence 997 699999998864
No 311
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=6.3e-06 Score=97.46 Aligned_cols=166 Identities=18% Similarity=0.097 Sum_probs=102.8
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHH------------hhhhhHHHHHHHHhhcccceeeec
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLA------------LTVGSSLNLYRSITNRGFYIEDYE 157 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~------------~~vg~se~~~r~i~~~~~~l~~~~ 157 (863)
|.||||||++|+.+++. |+-.... ....|++. .|-.... -..| ...+|.+++...+..
T Consensus 45 Gp~GvGKTTlAr~lAk~L~c~~~~~---~~pCg~C~-sC~~i~~~~~~dlieidaas~~g--vd~ir~ii~~~~~~p--- 115 (546)
T PRK14957 45 GTRGVGKTTLGRLLAKCLNCKTGVT---AEPCNKCE-NCVAINNNSFIDLIEIDAASRTG--VEETKEILDNIQYMP--- 115 (546)
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCC---CCCCcccH-HHHHHhcCCCCceEEeecccccC--HHHHHHHHHHHHhhh---
Confidence 99999999999999994 3311100 00122221 0000000 0111 234566666543322
Q ss_pred cCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHH
Q psy11009 158 VSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAG 237 (863)
Q Consensus 158 ~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~ 237 (863)
.....-|+||||+|.+- ....|.||..|.. +...+++|.+|+.+..|-+.++.|. ..++|..++.++
T Consensus 116 -~~g~~kViIIDEa~~ls--------~~a~naLLK~LEe---pp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~e 182 (546)
T PRK14957 116 -SQGRYKVYLIDEVHMLS--------KQSFNALLKTLEE---PPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQAD 182 (546)
T ss_pred -hcCCcEEEEEechhhcc--------HHHHHHHHHHHhc---CCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHH
Confidence 22345699999998874 3456777777753 3336777777777888888877788 789999999999
Q ss_pred HHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 238 REALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 238 R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
-..+++..+++..+. .+..+..|+..+. -+..++-+++..+
T Consensus 183 I~~~L~~il~~egi~~e~~Al~~Ia~~s~-GdlR~alnlLek~ 224 (546)
T PRK14957 183 IKDQLKIILAKENINSDEQSLEYIAYHAK-GSLRDALSLLDQA 224 (546)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 988888887654433 2344667777774 3566666666554
No 312
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=4.1e-06 Score=91.56 Aligned_cols=85 Identities=31% Similarity=0.445 Sum_probs=63.5
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhccC--CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc-cccch-h
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKGIR--RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRGE-S 786 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~~~--~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~-~~~Ge-~ 786 (863)
|+|++++|+.+.-++.--.+..++-..++ ..|+++|+.||.|+|||.+||-+|+-.+.||+.|.++.+.. +|+|. .
T Consensus 17 IIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKfTEVGYVGrDV 96 (444)
T COG1220 17 IIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKFTEVGYVGRDV 96 (444)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeeeeecccccccH
Confidence 89999999999877642222222222332 45799999999999999999999999999999999988765 57764 3
Q ss_pred HHHHHHHHH
Q psy11009 787 EKLVRLLFE 795 (863)
Q Consensus 787 e~~ir~lf~ 795 (863)
+..+|++.+
T Consensus 97 esivRDLve 105 (444)
T COG1220 97 ESIIRDLVE 105 (444)
T ss_pred HHHHHHHHH
Confidence 555555543
No 313
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.18 E-value=4.9e-06 Score=92.78 Aligned_cols=80 Identities=30% Similarity=0.436 Sum_probs=57.1
Q ss_pred cccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC--CcEEEEecccccccccch
Q psy11009 708 WDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSSTLTSKYRGE 785 (863)
Q Consensus 708 ~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~--~~~i~vs~s~l~~~~~Ge 785 (863)
-+.++|+.++++..--.+ +..+......+++||.||||||||.||-++|+++| +||+.++++++.+..+..
T Consensus 23 ~~GlVGQ~~AReAagiiv-------~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kK 95 (398)
T PF06068_consen 23 ADGLVGQEKAREAAGIIV-------DMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKK 95 (398)
T ss_dssp ETTEES-HHHHHHHHHHH-------HHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-H
T ss_pred cccccChHHHHHHHHHHH-------HHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCc
Confidence 456999999999887755 34455455678999999999999999999999996 899999999998776655
Q ss_pred hHHHHHHHHH
Q psy11009 786 SEKLVRLLFE 795 (863)
Q Consensus 786 ~e~~ir~lf~ 795 (863)
+|. +.+.|.
T Consensus 96 TE~-L~qa~R 104 (398)
T PF06068_consen 96 TEA-LTQAFR 104 (398)
T ss_dssp HHH-HHHHHH
T ss_pred hHH-HHHHHH
Confidence 543 334443
No 314
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.18 E-value=2.6e-06 Score=99.86 Aligned_cols=46 Identities=41% Similarity=0.546 Sum_probs=38.0
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.|+++.|+..+++.+.-.+. ...+++|.||||||||+++++++..+
T Consensus 190 d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~ll 235 (499)
T TIGR00368 190 DLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGIL 235 (499)
T ss_pred CHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhccc
Confidence 68889999999887766441 23589999999999999999998754
No 315
>KOG1514|consensus
Probab=98.16 E-value=1.4e-05 Score=94.38 Aligned_cols=213 Identities=17% Similarity=0.192 Sum_probs=133.5
Q ss_pred ccceeecceeEeeecccccccCcCCCcccccccccccccchhcc-------c-chhhhccCcchhHHHHHHHhhhhhHHH
Q psy11009 70 LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLV-------L-PLLAEEHGKLKFKEAITLALTVGSSLN 141 (863)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-------~-~~l~~~~gk~s~~e~~~~~~~vg~se~ 141 (863)
++. +..|-+.||- |+||||||.|...+.+- ++ + |-.|.++--+.++ +-..
T Consensus 416 i~~-~~~g~~mYIs-------GvPGtGKT~tV~~Vm~~----Lq~~s~~~e~p~f~yveINgm~l~----------~~~~ 473 (767)
T KOG1514|consen 416 ISD-QGLGSCMYIS-------GVPGTGKTATVLEVMKE----LQTSSAQKELPKFDYVEINGLRLA----------SPRE 473 (767)
T ss_pred cCC-CCCceeEEEe-------cCCCCCceehHHHHHHH----HHHHHhhcCCCCccEEEEcceeec----------CHHH
Confidence 445 7888899987 79999999998776651 11 1 1122222111111 2233
Q ss_pred HHHHHhhcccceee--------------e--ccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeE
Q psy11009 142 LYRSITNRGFYIED--------------Y--EVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQ 205 (863)
Q Consensus 142 ~~r~i~~~~~~l~~--------------~--~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~Vi 205 (863)
-|..|... +-|+ | ......||||+|||+|.|..++ ..|+- ...|.-..++.+++
T Consensus 474 ~Y~~I~~~--lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----QdVlY---n~fdWpt~~~sKLv 543 (767)
T KOG1514|consen 474 IYEKIWEA--LSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----QDVLY---NIFDWPTLKNSKLV 543 (767)
T ss_pred HHHHHHHh--cccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----HHHHH---HHhcCCcCCCCceE
Confidence 33333322 1111 2 2356679999999999998754 22322 23366666677899
Q ss_pred EEEccCCCCCccHHHhh----ccc-eEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHH--HHHHHHHH
Q psy11009 206 YSIQKGIPWDIDEALRR----RLE-KRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA--DITNVCRD 278 (863)
Q Consensus 206 vIaATN~p~~LD~AllR----RFD-~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGA--DI~~lv~~ 278 (863)
||+-.|..+..-.=|.- |.. .+|.|.+=+..+..+|+..-|+....-..-.++-+|++-.-.||. ....+|+.
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~~f~~~aielvarkVAavSGDaRraldic~R 623 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLDAFENKAIELVARKVAAVSGDARRALDICRR 623 (767)
T ss_pred EEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchhhcchhHHHHHHHHHHhccccHHHHHHHHHH
Confidence 99999998887777763 655 467788889999999999999776322222344556666666763 34457777
Q ss_pred HHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCC
Q psy11009 279 ASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSV 324 (863)
Q Consensus 279 Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psv 324 (863)
|+-.|-.+...+ .......|++.|+++|+..+..++
T Consensus 624 A~Eia~~~~~~~----------k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 624 AAEIAEERNVKG----------KLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHhhhhcccc----------cccccceeehHHHHHHHHHHhhhh
Confidence 766655554211 112234689999999999887653
No 316
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=1.2e-05 Score=95.82 Aligned_cols=156 Identities=16% Similarity=0.115 Sum_probs=94.9
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHHh-------hhhh---HHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLAL-------TVGS---SLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~~-------~vg~---se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||||||++|+.++|. |+-.. +. -.-.|.+. .|-.+... .-|. ....+|.+.+...|.. .
T Consensus 45 GPpG~GKTtiArilAk~L~C~~~--~~-~~pCg~C~-sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p----~ 116 (624)
T PRK14959 45 GTRGVGKTTIARIFAKALNCETA--PT-GEPCNTCE-QCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAP----M 116 (624)
T ss_pred CCCCCCHHHHHHHHHHhccccCC--CC-CCCCcccH-HHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhh----h
Confidence 99999999999999994 32111 00 00111110 00000000 0011 1233444443322222 2
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
.....||||||+|.+- ....+.||..|.. +...+++|.+||.++.|.+.|+.|+. .|.|+.++.++..
T Consensus 117 ~g~~kVIIIDEad~Lt--------~~a~naLLk~LEE---P~~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~ 184 (624)
T PRK14959 117 EGRYKVFIIDEAHMLT--------REAFNALLKTLEE---PPARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLE 184 (624)
T ss_pred cCCceEEEEEChHhCC--------HHHHHHHHHHhhc---cCCCEEEEEecCChhhhhHHHHhhhh-ccccCCCCHHHHH
Confidence 2345799999999884 2345777777654 33368888899999999999888985 6899999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCC
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDG 266 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG 266 (863)
.+|+..+.+..+. .+-.++.||..+.|
T Consensus 185 ~~L~~il~~egi~id~eal~lIA~~s~G 212 (624)
T PRK14959 185 AHLTKVLGREGVDYDPAAVRLIARRAAG 212 (624)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9998887654332 23346677776653
No 317
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.16 E-value=1.2e-06 Score=99.44 Aligned_cols=80 Identities=13% Similarity=0.079 Sum_probs=61.8
Q ss_pred cEEEEEeccccccccccc---chh-HhHHHHHHHHhhccCC-------CCCCeEEEEccC----CCCCccHHHhhccceE
Q psy11009 163 PTLAVAKMFSSLAVQKLL---RGS-KTFRTLCIHKYRLLTF-------PSTPVQYSIQKG----IPWDIDEALRRRLEKR 227 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~---~~~-~~v~n~lL~~ld~~~~-------~~~~VivIaATN----~p~~LD~AllRRFD~~ 227 (863)
--||||||||.|+.+..+ +.+ .-|...||..|.|-.- ..++|++|++-- .|.+|=|.|.=||..+
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~ 327 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIR 327 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceE
Confidence 459999999999976532 233 3478888888866321 134899998754 4777888888899999
Q ss_pred EEecCCCHHHHHHHH
Q psy11009 228 IYIPLPSKAGREALL 242 (863)
Q Consensus 228 I~i~lPd~~~R~~IL 242 (863)
+.+...+.+.-..||
T Consensus 328 v~L~~L~~edL~rIL 342 (441)
T TIGR00390 328 VELQALTTDDFERIL 342 (441)
T ss_pred EECCCCCHHHHHHHh
Confidence 999999999999888
No 318
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=1.9e-05 Score=94.76 Aligned_cols=170 Identities=15% Similarity=0.077 Sum_probs=103.5
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcchhHHHHHHHhh---------hhhHHHHHHHHhhcccceeeeccCC
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKFKEAITLALT---------VGSSLNLYRSITNRGFYIEDYEVSP 160 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~~e~~~~~~~---------vg~se~~~r~i~~~~~~l~~~~~~~ 160 (863)
|.||||||++|+..++ +|+.... +.. .-.|.+.+--.+..... -......+|.++++..+.. ..
T Consensus 45 Gp~G~GKTtlA~~lA~~l~c~~~~-~~~-~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p----~~ 118 (585)
T PRK14950 45 GPRGVGKTSTARILAKAVNCTTND-PKG-RPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRP----AL 118 (585)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCC-CCC-CCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCc----cc
Confidence 9999999999999998 4432221 111 11122211110100000 0112344566665432222 12
Q ss_pred CCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHH
Q psy11009 161 PGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREA 240 (863)
Q Consensus 161 ~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~ 240 (863)
...-||||||+|.+-. ...+.||..|+... ..++||.+|+.++.+.+.+..|+. +++|..++..+...
T Consensus 119 ~~~kVvIIDEa~~L~~--------~a~naLLk~LEepp---~~tv~Il~t~~~~kll~tI~SR~~-~i~f~~l~~~el~~ 186 (585)
T PRK14950 119 ARYKVYIIDEVHMLST--------AAFNALLKTLEEPP---PHAIFILATTEVHKVPATILSRCQ-RFDFHRHSVADMAA 186 (585)
T ss_pred CCeEEEEEeChHhCCH--------HHHHHHHHHHhcCC---CCeEEEEEeCChhhhhHHHHhccc-eeeCCCCCHHHHHH
Confidence 3456999999997742 34567777765433 356777777888888888887886 58899999999999
Q ss_pred HHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 241 LLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 241 IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
+++..+.+..+. .+-.+..|+..+.| +..++.+.+...
T Consensus 187 ~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~~LekL 225 (585)
T PRK14950 187 HLRKIAAAEGINLEPGALEAIARAATG-SMRDAENLLQQL 225 (585)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 998888554433 22336778888776 666666666543
No 319
>KOG2004|consensus
Probab=98.15 E-value=3.1e-06 Score=99.65 Aligned_cols=177 Identities=14% Similarity=0.082 Sum_probs=113.4
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHH---hhhhhHHHHHHHHhhcccceeeeccCCCCcEEEE
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLA---LTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAV 167 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~---~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlF 167 (863)
|+||.|||.+||+||+- ++=--.|.-.|=+ .|+|.+-. -|||.--.++-+...+ ..+.--+++
T Consensus 445 GPPGVGKTSI~kSIA~A----LnRkFfRfSvGG~-tDvAeIkGHRRTYVGAMPGkiIq~LK~---------v~t~NPliL 510 (906)
T KOG2004|consen 445 GPPGVGKTSIAKSIARA----LNRKFFRFSVGGM-TDVAEIKGHRRTYVGAMPGKIIQCLKK---------VKTENPLIL 510 (906)
T ss_pred CCCCCCcccHHHHHHHH----hCCceEEEecccc-ccHHhhcccceeeeccCChHHHHHHHh---------hCCCCceEE
Confidence 89999999999999993 1111223333332 23333322 3888888888777765 333333777
Q ss_pred EecccccccccccchhHhHHHHHHHHhhccCCC------------CCCeEEEEccCCCCCccHHHhhccceEEEecCCCH
Q psy11009 168 AKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFP------------STPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSK 235 (863)
Q Consensus 168 iDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~------------~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~ 235 (863)
|||+|.+++.-.. .=-+.||+.||-.... =.+|++|+|.|..+.|.++|+-|++ .|+++-=..
T Consensus 511 iDEvDKlG~g~qG----DPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRME-vIelsGYv~ 585 (906)
T KOG2004|consen 511 IDEVDKLGSGHQG----DPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRME-VIELSGYVA 585 (906)
T ss_pred eehhhhhCCCCCC----ChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhh-eeeccCccH
Confidence 9999999942222 1224455555422211 1389999999999999999999996 477776678
Q ss_pred HHHHHHHHHHhc-----cCCCC-CcccHHH------HhhhCCCCCH-----HHHHHHHHHHHHHHHHhh
Q psy11009 236 AGREALLKINLK-----EVKVD-PAVDLTH------IASQLDGYSG-----ADITNVCRDASMMSMRRK 287 (863)
Q Consensus 236 ~~R~~IL~~~l~-----~~~l~-~dvdl~~------LA~~TeG~SG-----ADI~~lv~~Aal~air~~ 287 (863)
++...|-+.||- ...+. ..+++.. |-++|. =+| -.|+.+|+.+|+..++..
T Consensus 586 eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Ycr-EaGVRnLqk~iekI~Rk~Al~vv~~~ 653 (906)
T KOG2004|consen 586 EEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCR-EAGVRNLQKQIEKICRKVALKVVEGE 653 (906)
T ss_pred HHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999982 22333 1233221 222221 122 578888988888888765
No 320
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=2e-05 Score=93.98 Aligned_cols=168 Identities=14% Similarity=0.077 Sum_probs=105.8
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHHh-------hhhh---HHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLAL-------TVGS---SLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~~-------~vg~---se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||+|||++|+.+++. |+-. ++.. ..-|.+ ..|-.+... +=|. ....+|.+.+...+.. .
T Consensus 45 Gp~G~GKTt~Ar~lAk~L~c~~--~~~~-~pC~~C-~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p----~ 116 (563)
T PRK06647 45 GPRGVGKTSSARAFARCLNCVN--GPTP-MPCGEC-SSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPP----A 116 (563)
T ss_pred CCCCCCHHHHHHHHHHhhcccc--CCCC-CCCccc-hHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhch----h
Confidence 99999999999999994 3321 1110 001111 011000000 0122 2345566664432222 2
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
....-|++|||+|.+- ....|.||..|. .+...+++|.+|+.++.|.+++..|+. .++|.+|+.++..
T Consensus 117 ~~~~KVvIIDEa~~Ls--------~~a~naLLK~LE---epp~~~vfI~~tte~~kL~~tI~SRc~-~~~f~~l~~~el~ 184 (563)
T PRK06647 117 SSRYRVYIIDEVHMLS--------NSAFNALLKTIE---EPPPYIVFIFATTEVHKLPATIKSRCQ-HFNFRLLSLEKIY 184 (563)
T ss_pred cCCCEEEEEEChhhcC--------HHHHHHHHHhhc---cCCCCEEEEEecCChHHhHHHHHHhce-EEEecCCCHHHHH
Confidence 3455699999999873 234677776665 343478888888889999999988987 5899999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.+++..+....+. .+-.+..||..+.| +..++.+++..+
T Consensus 185 ~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alslLdkl 224 (563)
T PRK06647 185 NMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTLFDQV 224 (563)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999888544333 23446778888776 667777666554
No 321
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.14 E-value=9.4e-06 Score=92.32 Aligned_cols=110 Identities=21% Similarity=0.314 Sum_probs=71.8
Q ss_pred ccCCCCceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCC
Q psy11009 737 GIRRPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEID 811 (863)
Q Consensus 737 ~~~~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID 811 (863)
..+.+...++||||.|+|||||++|++++. +..++++++..+...++......-..-|..- +.-.+++||+|+
T Consensus 108 ~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk~~--y~~dlllIDDiq 185 (408)
T COG0593 108 NPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFKEK--YSLDLLLIDDIQ 185 (408)
T ss_pred ccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHHHh--hccCeeeechHh
Confidence 334456789999999999999999999887 4568888888876655443322222233322 356799999999
Q ss_pred cccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 812 SLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 812 ~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.+.++. +++.+|...+..+...+. -+|+++-..|..+
T Consensus 186 ~l~gk~----------~~qeefFh~FN~l~~~~k----qIvltsdr~P~~l 222 (408)
T COG0593 186 FLAGKE----------RTQEEFFHTFNALLENGK----QIVLTSDRPPKEL 222 (408)
T ss_pred HhcCCh----------hHHHHHHHHHHHHHhcCC----EEEEEcCCCchhh
Confidence 997752 234455555555543322 3555666666554
No 322
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=98.14 E-value=1.1e-05 Score=93.89 Aligned_cols=105 Identities=12% Similarity=0.089 Sum_probs=75.2
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
.....||+|||+|.+-. ...+.||.-|+. +...+++|.+||.++.|.+++..|+. .++|..|+.++..
T Consensus 119 ~~~~kvvIIdead~lt~--------~~~n~LLk~lEe---p~~~~~~Il~t~~~~kl~~tI~sRc~-~v~f~~l~~~el~ 186 (451)
T PRK06305 119 KSRYKIYIIDEVHMLTK--------EAFNSLLKTLEE---PPQHVKFFLATTEIHKIPGTILSRCQ-KMHLKRIPEETII 186 (451)
T ss_pred cCCCEEEEEecHHhhCH--------HHHHHHHHHhhc---CCCCceEEEEeCChHhcchHHHHhce-EEeCCCCCHHHHH
Confidence 35678999999998842 245777777654 33367888888999999999999996 6899999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCR 277 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~ 277 (863)
.+++..+++.... .+..++.|+..+.| +..++.+.+.
T Consensus 187 ~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~~Le 224 (451)
T PRK06305 187 DKLALIAKQEGIETSREALLPIARAAQG-SLRDAESLYD 224 (451)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 9999888654332 23346777777754 4444444443
No 323
>PRK09087 hypothetical protein; Validated
Probab=98.13 E-value=1.3e-05 Score=84.88 Aligned_cols=127 Identities=11% Similarity=0.050 Sum_probs=83.2
Q ss_pred EEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCc---cHHHhhccc--eEEEecCCCHHHHH
Q psy11009 165 LAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDI---DEALRRRLE--KRIYIPLPSKAGRE 239 (863)
Q Consensus 165 IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~L---D~AllRRFD--~~I~i~lPd~~~R~ 239 (863)
+|+||++|.+... ...|...++.+...+ +.+||+++..|..+ .+.+.-||. ..+++..||.+.|.
T Consensus 90 ~l~iDDi~~~~~~---------~~~lf~l~n~~~~~g-~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~ 159 (226)
T PRK09087 90 PVLIEDIDAGGFD---------ETGLFHLINSVRQAG-TSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLS 159 (226)
T ss_pred eEEEECCCCCCCC---------HHHHHHHHHHHHhCC-CeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHH
Confidence 7889999977321 123444454444433 56777777665533 567776997 88999999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALA 318 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~ 318 (863)
+|++.++....+. ++--++.|++...| +.+.+..++......+... ..+||..-+.+++.
T Consensus 160 ~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~------------------~~~it~~~~~~~l~ 220 (226)
T PRK09087 160 QVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER------------------KSRITRALAAEVLN 220 (226)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh------------------CCCCCHHHHHHHHH
Confidence 9999999654433 33447888888873 5555555554443333332 34688888777776
Q ss_pred Hh
Q psy11009 319 RC 320 (863)
Q Consensus 319 ~v 320 (863)
.+
T Consensus 221 ~~ 222 (226)
T PRK09087 221 EM 222 (226)
T ss_pred hh
Confidence 53
No 324
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.13 E-value=2e-05 Score=94.62 Aligned_cols=136 Identities=10% Similarity=0.077 Sum_probs=84.0
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcc---cceeeeccCCCCcEEEE
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRG---FYIEDYEVSPPGPTLAV 167 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~---~~l~~~~~~~~~P~IlF 167 (863)
|.||||||++|+++++. +....|.++...+-+ ...++|.. .+...+..+ +.-|.+. ...-.|||
T Consensus 23 G~~GtgKs~lar~l~~~--~~~~~pfv~i~~~~t-------~d~L~G~i--dl~~~~~~g~~~~~~G~L~--~A~~GvL~ 89 (589)
T TIGR02031 23 ARAGTGKTALARALAEI--LPPIMPFVELPLGVT-------EDRLIGGI--DVEESLAGGQRVTQPGLLD--EAPRGVLY 89 (589)
T ss_pred cCCCcHHHHHHHHHHHh--CCcCCCeEecCcccc-------hhhcccch--hhhhhhhcCcccCCCCCee--eCCCCcEe
Confidence 99999999999999985 000112222222111 33344432 111111111 1111111 12234999
Q ss_pred EecccccccccccchhHhHHHHHHHHhh-cc--------CC-CCCCeEEEEccCCCC---CccHHHhhccceEEEec-CC
Q psy11009 168 AKMFSSLAVQKLLRGSKTFRTLCIHKYR-LL--------TF-PSTPVQYSIQKGIPW---DIDEALRRRLEKRIYIP-LP 233 (863)
Q Consensus 168 iDEiDal~~~R~~~~~~~v~n~lL~~ld-~~--------~~-~~~~VivIaATN~p~---~LD~AllRRFD~~I~i~-lP 233 (863)
+||++.+- ..+.+.|+..|+ +. .. ...++.||||+|..+ .|.++++.||+.+|.+. .|
T Consensus 90 lDEi~rl~--------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~ 161 (589)
T TIGR02031 90 VDMANLLD--------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVA 161 (589)
T ss_pred ccchhhCC--------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCC
Confidence 99999885 356677777774 21 10 113689999999876 79999999999999886 56
Q ss_pred CHHHHHHHHHHHhc
Q psy11009 234 SKAGREALLKINLK 247 (863)
Q Consensus 234 d~~~R~~IL~~~l~ 247 (863)
+..+|.+|++.++.
T Consensus 162 ~~~er~eil~~~~~ 175 (589)
T TIGR02031 162 SQDLRVEIVRRERC 175 (589)
T ss_pred CHHHHHHHHHHHHH
Confidence 78889999988773
No 325
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.12 E-value=1.9e-06 Score=87.50 Aligned_cols=110 Identities=9% Similarity=0.027 Sum_probs=67.6
Q ss_pred CcCCCcccccccccccccchhccc----chhhhccCcchh--HHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcE
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVL----PLLAEEHGKLKF--KEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPT 164 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~----~~l~~~~gk~s~--~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~ 164 (863)
|+.|||||.+|+.++++ +.+ |+++.+.+..+- +....++..+|.....+...-. .
T Consensus 10 GpsGvGKT~la~~la~~----l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~------------g--- 70 (171)
T PF07724_consen 10 GPSGVGKTELAKALAEL----LFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEG------------G--- 70 (171)
T ss_dssp SSTTSSHHHHHHHHHHH----HT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHH------------T---
T ss_pred CCCCCCHHHHHHHHHHH----hccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccch------------h---
Confidence 99999999999999997 443 666666644433 1122234444444433332211 1
Q ss_pred EEEEeccccccccccc--chh-HhHHHHHHHHhhccC--------CCCCCeEEEEccCCCCCccHH
Q psy11009 165 LAVAKMFSSLAVQKLL--RGS-KTFRTLCIHKYRLLT--------FPSTPVQYSIQKGIPWDIDEA 219 (863)
Q Consensus 165 IlFiDEiDal~~~R~~--~~~-~~v~n~lL~~ld~~~--------~~~~~VivIaATN~p~~LD~A 219 (863)
||||||||.+..+... +.+ ..+.+.||..|++-. -.-.++++|+|||.-......
T Consensus 71 VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~ 136 (171)
T PF07724_consen 71 VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIID 136 (171)
T ss_dssp EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHH
T ss_pred hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhh
Confidence 9999999999874211 222 467788888774211 112479999999997644433
No 326
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=7.8e-06 Score=98.36 Aligned_cols=167 Identities=14% Similarity=0.111 Sum_probs=103.1
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHH----------HhhhhhHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITL----------ALTVGSSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~----------~~~vg~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||+|||++|..+++. |+.....|. ..--|++.. |-... .-.-+.....+|.+++...+.. .
T Consensus 45 Gp~G~GKttlA~~lAk~L~c~~~~~~~-~~~Cg~C~~-C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p----~ 118 (620)
T PRK14948 45 GPRGTGKTSSARILAKSLNCLNSDKPT-PEPCGKCEL-CRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAP----V 118 (620)
T ss_pred CCCCCChHHHHHHHHHHhcCCCcCCCC-CCCCcccHH-HHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhCh----h
Confidence 99999999999999994 433222210 012232211 11111 0111244568899987653332 1
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
..+.-|+||||+|.+- ....|.||..|+. +...+++|++|+.++.|-+.+..|. ..++|..|+..+-.
T Consensus 119 ~~~~KViIIDEad~Lt--------~~a~naLLK~LEe---Pp~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~ 186 (620)
T PRK14948 119 QARWKVYVIDECHMLS--------TAAFNALLKTLEE---PPPRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMV 186 (620)
T ss_pred cCCceEEEEECccccC--------HHHHHHHHHHHhc---CCcCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHH
Confidence 2344699999999883 2345778777763 3336788888889999999988888 45788888888777
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVC 276 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv 276 (863)
..+.....+.... ....+..|+..+.| +..++.+++
T Consensus 187 ~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~~lL 223 (620)
T PRK14948 187 QHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAESLL 223 (620)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 7777666543322 12336777777765 234444443
No 327
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.11 E-value=7.5e-06 Score=90.14 Aligned_cols=81 Identities=32% Similarity=0.461 Sum_probs=62.7
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC--CcEEEEecccccccccchh
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSSTLTSKYRGES 786 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~--~~~i~vs~s~l~~~~~Ge~ 786 (863)
+-++|+.++++..--.+ +..+......+++||.||||||||.||-+||+++| .||..++++++.+.....+
T Consensus 39 dG~VGQ~~AReAaGvIv-------~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKT 111 (450)
T COG1224 39 DGLVGQEEAREAAGVIV-------KMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKT 111 (450)
T ss_pred CcccchHHHHHhhhHHH-------HHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHH
Confidence 45999999988766544 23344456778999999999999999999999995 8999999999987766666
Q ss_pred HHHHHHHHHHH
Q psy11009 787 EKLVRLLFEMA 797 (863)
Q Consensus 787 e~~ir~lf~~A 797 (863)
+.. .+.|..+
T Consensus 112 E~L-~qa~Rra 121 (450)
T COG1224 112 EAL-TQALRRA 121 (450)
T ss_pred HHH-HHHHHHh
Confidence 544 3444433
No 328
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.3e-05 Score=88.74 Aligned_cols=128 Identities=22% Similarity=0.326 Sum_probs=83.7
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-----EEEEeccccccccc-
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT-----FFNVCSSTLTSKYR- 783 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~-----~i~vs~s~l~~~~~- 783 (863)
.+.+.++...++...+. ..+.+ ..+.+++++||||||||.+++-+++++..+ ++++||....+.+.
T Consensus 18 ~l~~Re~ei~~l~~~l~------~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 18 ELPHREEEINQLASFLA------PALRG--ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cccccHHHHHHHHHHHH------HHhcC--CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 38888998888888653 12222 233469999999999999999999998544 89999977654321
Q ss_pred --------------chh-HHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCC
Q psy11009 784 --------------GES-EKLVRLLFEMAR-FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSS 847 (863)
Q Consensus 784 --------------Ge~-e~~ir~lf~~A~-~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~ 847 (863)
|.. ......+++... .....||++||+|.|..+.+ .++-.|+...+.. .
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~------~ 154 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGEN------K 154 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhcccc------c
Confidence 111 122233333222 34567999999999987642 3445555443322 3
Q ss_pred CceEEEEecCCCC
Q psy11009 848 KVVMVLAATNFPW 860 (863)
Q Consensus 848 ~~VvVIaTTN~P~ 860 (863)
..|.||+.+|..+
T Consensus 155 ~~v~vi~i~n~~~ 167 (366)
T COG1474 155 VKVSIIAVSNDDK 167 (366)
T ss_pred eeEEEEEEeccHH
Confidence 4588999988654
No 329
>KOG1970|consensus
Probab=98.10 E-value=4.4e-05 Score=88.17 Aligned_cols=74 Identities=18% Similarity=0.184 Sum_probs=56.0
Q ss_pred HhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 696 ERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 696 ~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
...|+++|.|.+.++|.-...=..++.+|+. .-..+ ..+.+.+-+||+||+|||||+.++.+|+++|..+++-+
T Consensus 69 ~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~----~~~~~-~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 69 FELWVEKYKPRTLEELAVHKKKISEVKQWLK----QVAEF-TPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred cchhHHhcCcccHHHHhhhHHhHHHHHHHHH----HHHHh-ccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 3579999999999999877766666666652 00111 11233356889999999999999999999999998865
No 330
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=2e-05 Score=92.88 Aligned_cols=170 Identities=13% Similarity=0.085 Sum_probs=107.3
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHH--------HHhhhhh---HHHHHHHHhhcccceeeecc
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAIT--------LALTVGS---SLNLYRSITNRGFYIEDYEV 158 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~--------~~~~vg~---se~~~r~i~~~~~~l~~~~~ 158 (863)
|.||+|||.+|+..++. |+- ..+.. .--|.+ -.|-.+ +.+. +. ....+|.++....+..
T Consensus 43 Gp~G~GKTt~Ar~LAk~L~c~--~~~~~-~pC~~C-~~C~~~~~~~h~dv~eld-aas~~gId~IRelie~~~~~P---- 113 (535)
T PRK08451 43 GLRGSGKTSSARIFARALVCE--QGPSS-TPCDTC-IQCQSALENRHIDIIEMD-AASNRGIDDIRELIEQTKYKP---- 113 (535)
T ss_pred CCCCCcHHHHHHHHHHHhcCC--CCCCC-CCCccc-HHHHHHhhcCCCeEEEec-cccccCHHHHHHHHHHHhhCc----
Confidence 99999999999999984 211 11110 000000 000000 0010 11 1356777776532221
Q ss_pred CCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHH
Q psy11009 159 SPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGR 238 (863)
Q Consensus 159 ~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R 238 (863)
....--|++|||+|.+- ....|.||.-|.... ..+.+|.+|+.+..|-+++..|. .+++|.+++.++-
T Consensus 114 ~~~~~KVvIIDEad~Lt--------~~A~NALLK~LEEpp---~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei 181 (535)
T PRK08451 114 SMARFKIFIIDEVHMLT--------KEAFNALLKTLEEPP---SYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSI 181 (535)
T ss_pred ccCCeEEEEEECcccCC--------HHHHHHHHHHHhhcC---CceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHH
Confidence 12344599999998773 345677877775432 35777778888999999998896 5889999999999
Q ss_pred HHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHH
Q psy11009 239 EALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMM 282 (863)
Q Consensus 239 ~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~ 282 (863)
..+++..+.+.... .+-.+..||..+.| +..++.+++..+...
T Consensus 182 ~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnlLdqai~~ 225 (535)
T PRK08451 182 ISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTLLDQAIIY 225 (535)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHHHHh
Confidence 99998888544333 23457788888876 777888777766544
No 331
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.10 E-value=2.1e-05 Score=95.17 Aligned_cols=75 Identities=9% Similarity=0.042 Sum_probs=55.8
Q ss_pred EEEEEecccccccccccchhHhHHHHHHHHhh-cc---C------CCCCCeEEEEccCCC-CCccHHHhhccceEEEecC
Q psy11009 164 TLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR-LL---T------FPSTPVQYSIQKGIP-WDIDEALRRRLEKRIYIPL 232 (863)
Q Consensus 164 ~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld-~~---~------~~~~~VivIaATN~p-~~LD~AllRRFD~~I~i~l 232 (863)
.||||||++.+- ..+++.||..|+ +. . ....+++||+|+|.. ..|.++|+.||+.+|.++.
T Consensus 128 GiL~lDEi~~l~--------~~~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~ 199 (633)
T TIGR02442 128 GILYIDEVNLLD--------DHLVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAA 199 (633)
T ss_pred CeEEeChhhhCC--------HHHHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccC
Confidence 499999999885 455677777773 21 0 112368999999953 3688999999999999987
Q ss_pred CC-HHHHHHHHHHHh
Q psy11009 233 PS-KAGREALLKINL 246 (863)
Q Consensus 233 Pd-~~~R~~IL~~~l 246 (863)
|. .++|.+|++..+
T Consensus 200 ~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 200 PRDPEERVEIIRRRL 214 (633)
T ss_pred CCchHHHHHHHHHHH
Confidence 64 688888887644
No 332
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.09 E-value=8.8e-06 Score=91.19 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=50.9
Q ss_pred ccc-cccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC-------cEEEEec
Q psy11009 707 RWD-DIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT-------TFFNVCS 775 (863)
Q Consensus 707 ~~~-dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~-------~~i~vs~ 775 (863)
-|+ ++.|+++++.++.+++. ....+.+...+.++|+||||||||++|+++|+.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~------~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFK------SAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHH------HHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 345 89999999999988773 222333445578999999999999999999999976 8999987
No 333
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.09 E-value=1.9e-05 Score=76.75 Aligned_cols=72 Identities=24% Similarity=0.321 Sum_probs=48.4
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc----------------------cc--hhHHHHHHHHHHH
Q psy11009 745 VLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY----------------------RG--ESEKLVRLLFEMA 797 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~----------------------~G--e~e~~ir~lf~~A 797 (863)
++++||||+|||+++..++..+ +.+++.++........ .. ......+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 6899999999999999998887 5667666654322100 00 0111222344556
Q ss_pred HhCCCeEEEEcCCCccccc
Q psy11009 798 RFYAPSTIFIDEIDSLCSR 816 (863)
Q Consensus 798 ~~~~p~ILfIDEID~l~~~ 816 (863)
....+.+|+|||+..+...
T Consensus 82 ~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 82 ERGGDDLIILDELTRLVRA 100 (165)
T ss_pred hCCCCEEEEEEcHHHHHHH
Confidence 6678999999999988653
No 334
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.09 E-value=1.7e-05 Score=75.44 Aligned_cols=86 Identities=24% Similarity=0.341 Sum_probs=55.1
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh--------CCcEEEEeccccccc--c------------c--chhHHHHHHHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC--------GTTFFNVCSSTLTSK--Y------------R--GESEKLVRLLFEMA 797 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el--------~~~~i~vs~s~l~~~--~------------~--Ge~e~~ir~lf~~A 797 (863)
.+.++++||||+|||++++.++..+ ..+++.+++....+. + . .........+.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3578999999999999999999987 678888876543310 0 0 12233444555555
Q ss_pred HhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh
Q psy11009 798 RFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 798 ~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD 838 (863)
......+|+|||+|.+. + ..+++.|...++
T Consensus 84 ~~~~~~~lviDe~~~l~-~----------~~~l~~l~~l~~ 113 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLF-S----------DEFLEFLRSLLN 113 (131)
T ss_dssp HHCTEEEEEEETTHHHH-T----------HHHHHHHHHHTC
T ss_pred HhcCCeEEEEeChHhcC-C----------HHHHHHHHHHHh
Confidence 55555799999999974 1 345566655554
No 335
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.07 E-value=1e-05 Score=75.62 Aligned_cols=89 Identities=21% Similarity=0.338 Sum_probs=52.3
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcE--------EEEec-ccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 745 VLMVGPPGTGKTMLAKAVATECGTTF--------FNVCS-STLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el~~~~--------i~vs~-s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
|.|+||||+|||++|+.+|+.+...+ +..+. .++.+.| ....++++||+.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY-----------------~~q~vvi~DD~~~~~~ 63 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGY-----------------QGQPVVIIDDFGQDND 63 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhcc-----------------CCCcEEEEeecCcccc
Confidence 57999999999999999998874322 22111 1222222 1345899999977643
Q ss_pred cCCCCchhhHHHHHHHHHHHHHhcCCCC---------CCCCCceEEEEecCC
Q psy11009 816 RRGSESEHEASRRVKSELLVQMDGLSSA---------EDSSKVVMVLAATNF 858 (863)
Q Consensus 816 ~R~~~~~~e~~~rv~~~LL~~lD~l~~~---------~~~~~~VvVIaTTN~ 858 (863)
.- ......+|+..++...-. +..-...+||+|||.
T Consensus 64 ~~--------~~~~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~~vi~tsN~ 107 (107)
T PF00910_consen 64 GY--------NYSDESELIRLISSNPFQPNMADLEDKGTPFNSKLVIITSNF 107 (107)
T ss_pred cc--------chHHHHHHHHHHhcCCcccccccHhhCCCccCCCEEEEcCCC
Confidence 20 112456666666632211 111223578899985
No 336
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=1.4e-05 Score=95.60 Aligned_cols=168 Identities=14% Similarity=0.061 Sum_probs=106.6
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHHh-------hhh---hHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLAL-------TVG---SSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~~-------~vg---~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||+|||++|+..++. |+-.- +. ...-|.+ ..|-.+.+. +-| .....+|.+.+...|.. .
T Consensus 45 Gp~G~GKtt~A~~lak~l~c~~~--~~-~~~c~~c-~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p----~ 116 (576)
T PRK14965 45 GARGVGKTSTARILAKALNCEQG--LT-AEPCNVC-PPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLP----S 116 (576)
T ss_pred CCCCCCHHHHHHHHHHhhcCCCC--CC-CCCCCcc-HHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhcc----c
Confidence 99999999999999995 33211 00 0011111 111111000 001 22346777777654433 2
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
...--|++|||+|.+-. .-.|.||.-|.. +..++++|.+||.++.|-+.++.|.. +|+|..++..+-.
T Consensus 117 ~~~~KVvIIdev~~Lt~--------~a~naLLk~LEe---pp~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~~~i~ 184 (576)
T PRK14965 117 RSRYKIFIIDEVHMLST--------NAFNALLKTLEE---PPPHVKFIFATTEPHKVPITILSRCQ-RFDFRRIPLQKIV 184 (576)
T ss_pred cCCceEEEEEChhhCCH--------HHHHHHHHHHHc---CCCCeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCHHHHH
Confidence 23446999999997742 345778777764 33378888899999999999988885 7889999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.+++..+++..+. .+-.+..|+..+.| +-.++.+++..+
T Consensus 185 ~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~Ldql 224 (576)
T PRK14965 185 DRLRYIADQEGISISDAALALVARKGDG-SMRDSLSTLDQV 224 (576)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 8998888654443 23446778888875 555555555443
No 337
>PRK09087 hypothetical protein; Validated
Probab=98.02 E-value=1.8e-05 Score=83.96 Aligned_cols=55 Identities=25% Similarity=0.405 Sum_probs=37.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSL 813 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l 813 (863)
+.++|+||+|||||||+++++...+..+ ++...+... ++.... ..+|+|||++.+
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~~-----------~~~~~~---~~~l~iDDi~~~ 99 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGSD-----------AANAAA---EGPVLIEDIDAG 99 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcchH-----------HHHhhh---cCeEEEECCCCC
Confidence 4599999999999999999998876554 333222211 111111 258999999976
No 338
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.01 E-value=2.8e-05 Score=88.12 Aligned_cols=148 Identities=16% Similarity=0.111 Sum_probs=96.8
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC---CccHHHhhcc-ceEEEecCCCH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW---DIDEALRRRL-EKRIYIPLPSK 235 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~---~LD~AllRRF-D~~I~i~lPd~ 235 (863)
...+.||.+||+|.|..+.. .++-.|+...+.. ..+|.+|+.+|..+ .||+-+..|| ...|.||+=+.
T Consensus 121 ~~~~~IvvLDEid~L~~~~~-----~~LY~L~r~~~~~---~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a 192 (366)
T COG1474 121 KGKTVIVILDEVDALVDKDG-----EVLYSLLRAPGEN---KVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTA 192 (366)
T ss_pred cCCeEEEEEcchhhhccccc-----hHHHHHHhhcccc---ceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCH
Confidence 56788999999999987653 3333333322222 44799999999864 8888888843 33489999999
Q ss_pred HHHHHHHHHHhccCCCC---CcccHHHHhhhCCCCCHHHHH---HHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCC
Q psy11009 236 AGREALLKINLKEVKVD---PAVDLTHIASQLDGYSGADIT---NVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVS 309 (863)
Q Consensus 236 ~~R~~IL~~~l~~~~l~---~dvdl~~LA~~TeG~SGADI~---~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt 309 (863)
++-..|++.-.+..--. .+--++.+|....-.+| |.+ .+|+.|+..|-++. ...++
T Consensus 193 ~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr~A~eiAe~~~-----------------~~~v~ 254 (366)
T COG1474 193 EELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILRRAGEIAEREG-----------------SRKVS 254 (366)
T ss_pred HHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHHhhC-----------------CCCcC
Confidence 99999999887532111 11223444444432232 444 46777777777665 55789
Q ss_pred HHHHHHHHHHhcCCCchhhhhhcc
Q psy11009 310 QRDFEEALARCNKSVAREDLENIT 333 (863)
Q Consensus 310 ~~Df~~AL~~v~psvs~~~l~~~~ 333 (863)
.+|...|...+.+....+.+..+.
T Consensus 255 ~~~v~~a~~~~~~~~~~~~~~~L~ 278 (366)
T COG1474 255 EDHVREAQEEIERDVLEEVLKTLP 278 (366)
T ss_pred HHHHHHHHHHhhHHHHHHHHHcCC
Confidence 999999977776666655554443
No 339
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=97.97 E-value=4.3e-05 Score=82.28 Aligned_cols=158 Identities=15% Similarity=0.094 Sum_probs=108.1
Q ss_pred ceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccce
Q psy11009 77 GNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYI 153 (863)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l 153 (863)
-+|+| |+||.|||++|..+|. -|+-.-.+|.| .++|.+ .++ +..
T Consensus 54 HvLl~---------GPPGlGKTTLA~IIA~Emgvn~k~tsGp~l-eK~gDl-------aai------------Lt~---- 100 (332)
T COG2255 54 HVLLF---------GPPGLGKTTLAHIIANELGVNLKITSGPAL-EKPGDL-------AAI------------LTN---- 100 (332)
T ss_pred eEEee---------CCCCCcHHHHHHHHHHHhcCCeEecccccc-cChhhH-------HHH------------Hhc----
Confidence 36889 9999999999999999 56777778888 555554 222 211
Q ss_pred eeeccCCCCcEEEEEecccccccccccchhHhHHHHHHH--HhhccCCC----------CCCeEEEEccCCCCCccHHHh
Q psy11009 154 EDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIH--KYRLLTFP----------STPVQYSIQKGIPWDIDEALR 221 (863)
Q Consensus 154 ~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~--~ld~~~~~----------~~~VivIaATN~p~~LD~All 221 (863)
-..-.|||||||-.+... ...++-.-++ ++|-+-.. =...-+||||-+.-.|-.-|.
T Consensus 101 ------Le~~DVLFIDEIHrl~~~-----vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLr 169 (332)
T COG2255 101 ------LEEGDVLFIDEIHRLSPA-----VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLR 169 (332)
T ss_pred ------CCcCCeEEEehhhhcChh-----HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccccccchhH
Confidence 111259999999988642 1222111111 11211111 125779999999999999998
Q ss_pred hccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 222 RRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 222 RRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
-||-....+..=+.++-.+|+....+.+.+. .+-...+||+++.| |+.=--.+++..
T Consensus 170 dRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRV 227 (332)
T COG2255 170 DRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRV 227 (332)
T ss_pred HhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHH
Confidence 8999999999999999999999998766655 33446789999987 443333344443
No 340
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.96 E-value=4.5e-05 Score=80.45 Aligned_cols=109 Identities=16% Similarity=0.173 Sum_probs=69.1
Q ss_pred cEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCc---cHHHhhccce--EEEecCCCHHH
Q psy11009 163 PTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDI---DEALRRRLEK--RIYIPLPSKAG 237 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~L---D~AllRRFD~--~I~i~lPd~~~ 237 (863)
..+|+||+++.+..+. .....|...++.+...+ +-+||++...|..| ++.+.-||.. .+.+..||.+.
T Consensus 98 ~DlL~iDDi~~l~~~~------~~q~~lf~l~n~~~~~~-k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~ 170 (219)
T PF00308_consen 98 ADLLIIDDIQFLAGKQ------RTQEELFHLFNRLIESG-KQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDED 170 (219)
T ss_dssp SSEEEEETGGGGTTHH------HHHHHHHHHHHHHHHTT-SEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHH
T ss_pred CCEEEEecchhhcCch------HHHHHHHHHHHHHHhhC-CeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHH
Confidence 3499999999997532 23344555555444333 45666666666654 6666668877 88889999999
Q ss_pred HHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 238 REALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 238 R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
|.+|++.......+. ++--++.|+...+ -+..+|+.++..-
T Consensus 171 r~~il~~~a~~~~~~l~~~v~~~l~~~~~-~~~r~L~~~l~~l 212 (219)
T PF00308_consen 171 RRRILQKKAKERGIELPEEVIEYLARRFR-RDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHHHHHHTT--S-HHHHHHHHHHTT-SSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHhhc-CCHHHHHHHHHHH
Confidence 999999999655444 2233677888876 4888888777654
No 341
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.96 E-value=2.7e-05 Score=89.20 Aligned_cols=171 Identities=13% Similarity=0.037 Sum_probs=97.0
Q ss_pred CcCCCcccccccccccc-cchhcc-cc----hhhhccCcchhHHHHHHHh-------hhhh---HHHHHHHHhhccccee
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLV-LP----LLAEEHGKLKFKEAITLAL-------TVGS---SLNLYRSITNRGFYIE 154 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~-~~----~l~~~~gk~s~~e~~~~~~-------~vg~---se~~~r~i~~~~~~l~ 154 (863)
|.||||||++|+..|+. |+-.-. -| ..-.--|++ -.|....+. +-|. ....+|.+.+...+-.
T Consensus 45 Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c-~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p 123 (397)
T PRK14955 45 GLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC-ESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGP 123 (397)
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC-HHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhch
Confidence 99999999999999994 321100 00 000011221 011111100 0121 1345666655442222
Q ss_pred eeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCC
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPS 234 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd 234 (863)
|. ..-.|+||||+|.+-. .-.+.||.-|. .+...+++|.+|+.+..|-+++..|.. .++|..++
T Consensus 124 -~~---~~~kvvIIdea~~l~~--------~~~~~LLk~LE---ep~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~ 187 (397)
T PRK14955 124 -QK---GRYRVYIIDEVHMLSI--------AAFNAFLKTLE---EPPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIP 187 (397)
T ss_pred -hc---CCeEEEEEeChhhCCH--------HHHHHHHHHHh---cCCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCC
Confidence 11 1235999999998842 23456666664 332355666667777888888888886 78999999
Q ss_pred HHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 235 KAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 235 ~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
..+-..+++..++..... .+-.++.|+..+.| +...+.+.+..+
T Consensus 188 ~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g-~lr~a~~~L~kl 232 (397)
T PRK14955 188 LEEIQQQLQGICEAEGISVDADALQLIGRKAQG-SMRDAQSILDQV 232 (397)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999888888888544332 23335667777754 455555554443
No 342
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=4.2e-05 Score=91.37 Aligned_cols=166 Identities=13% Similarity=0.063 Sum_probs=105.2
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcc--------------hhHHHHHHHhhhhhHHHHHHHHhhcccceee
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKL--------------KFKEAITLALTVGSSLNLYRSITNRGFYIED 155 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~--------------s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~ 155 (863)
|.+|||||++|+.+++ +|+- .+|.- .--|.+ -+.|..+-+. -....+|.+.++..|.-
T Consensus 42 Gp~G~GKTt~A~~lAk~l~c~--~~~~~-~pCg~C~~C~~i~~~~~~~~dvieidaas~---~gvd~iRel~~~~~~~P- 114 (584)
T PRK14952 42 GPRGCGKTSSARILARSLNCA--QGPTA-TPCGVCESCVALAPNGPGSIDVVELDAASH---GGVDDTRELRDRAFYAP- 114 (584)
T ss_pred CCCCCCHHHHHHHHHHHhccc--cCCCC-CcccccHHHHHhhcccCCCceEEEeccccc---cCHHHHHHHHHHHHhhh-
Confidence 9999999999999998 5543 12210 011111 1111111000 02455667766543332
Q ss_pred eccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCH
Q psy11009 156 YEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSK 235 (863)
Q Consensus 156 ~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~ 235 (863)
....--|++|||+|.+-. ...|.||..|.. +...+++|.+|+.++.|-+++..|. .+++|..++.
T Consensus 115 ---~~~~~KVvIIDEah~Lt~--------~A~NALLK~LEE---pp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~ 179 (584)
T PRK14952 115 ---AQSRYRIFIVDEAHMVTT--------AGFNALLKIVEE---PPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPP 179 (584)
T ss_pred ---hcCCceEEEEECCCcCCH--------HHHHHHHHHHhc---CCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCH
Confidence 123345999999998842 356777777754 3337888889999999999998885 5799999999
Q ss_pred HHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 236 AGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 236 ~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.+...+++.++++.... .+..+..|+..+. -+..++.+++..+
T Consensus 180 ~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~-GdlR~aln~Ldql 223 (584)
T PRK14952 180 RTMRALIARICEQEGVVVDDAVYPLVIRAGG-GSPRDTLSVLDQL 223 (584)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC-CCHHHHHHHHHHH
Confidence 99999999888654433 2233555666554 3566666666554
No 343
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=8.1e-06 Score=93.31 Aligned_cols=48 Identities=42% Similarity=0.562 Sum_probs=40.4
Q ss_pred CCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 705 ~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
...|.||+|++.+|+.+..+.. ...|+||+||||||||++|+-+...+
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA--------------GgHnLl~~GpPGtGKTmla~Rl~~lL 222 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA--------------GGHNLLLVGPPGTGKTMLASRLPGLL 222 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh--------------cCCcEEEecCCCCchHHhhhhhcccC
Confidence 3578999999999999987652 23589999999999999999887655
No 344
>PF13173 AAA_14: AAA domain
Probab=97.93 E-value=3.9e-05 Score=73.78 Aligned_cols=69 Identities=28% Similarity=0.417 Sum_probs=47.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC--CcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSL 813 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~--~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l 813 (863)
+-++|+||.|||||++++.++..+. ..+++++..+.......... ....+.+. ....+.+||||||..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLEL-IKPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHh-hccCCcEEEEehhhhh
Confidence 4689999999999999999998886 77888887765432111111 11222222 1125789999999877
No 345
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=7.4e-05 Score=83.33 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCc------------------------EEEEecccccccccchhHHHHHHHHH
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTT------------------------FFNVCSSTLTSKYRGESEKLVRLLFE 795 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~~------------------------~i~vs~s~l~~~~~Ge~e~~ir~lf~ 795 (863)
+.+-.+||+||+|+||+++|+++|+.+.+. |+.+.+.+ ++.+ .-..+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~~~I--~id~iR~l~~ 97 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPID--NKDI--GVDQVREINE 97 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcccc--CCCC--CHHHHHHHHH
Confidence 344589999999999999999999887331 22222110 1111 1223444444
Q ss_pred HHH----hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 796 MAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 796 ~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.+. .....|++||++|.+.. ...+.||+.| +++...+++|.+|+.|+.|
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~------------~AaNaLLKtL------EEPp~~~~fiL~t~~~~~l 150 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTE------------AAANALLKTL------EEPRPNTYFLLQADLSAAL 150 (325)
T ss_pred HHhhccccCCceEEEEechhhhCH------------HHHHHHHHHh------cCCCCCeEEEEEECChHhC
Confidence 332 34456999999998843 3578899888 4556678888888887654
No 346
>PRK13531 regulatory ATPase RavA; Provisional
Probab=97.92 E-value=7.2e-05 Score=86.85 Aligned_cols=75 Identities=11% Similarity=-0.037 Sum_probs=50.0
Q ss_pred EEEEEecccccccccccchhHhHHHHHHHHh-hcc------CCCCCCeEEEEccCCCC---CccHHHhhccceEEEecCC
Q psy11009 164 TLAVAKMFSSLAVQKLLRGSKTFRTLCIHKY-RLL------TFPSTPVQYSIQKGIPW---DIDEALRRRLEKRIYIPLP 233 (863)
Q Consensus 164 ~IlFiDEiDal~~~R~~~~~~~v~n~lL~~l-d~~------~~~~~~VivIaATN~p~---~LD~AllRRFD~~I~i~lP 233 (863)
.|||+||+... ...+.+.||..| .+. ..+-..-++++|||... ...+|++-||-.+|.+|.|
T Consensus 109 ~lLfLDEI~ra--------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~g~~leAL~DRFliri~vp~l 180 (498)
T PRK13531 109 EIVFLDEIWKA--------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEADSSLEALYDRMLIRLWLDKV 180 (498)
T ss_pred cEEeecccccC--------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCcccCCchHHhHhhEEEEEECCCC
Confidence 39999999633 456778888888 222 11111235555667532 3456999999999999999
Q ss_pred C-HHHHHHHHHHHh
Q psy11009 234 S-KAGREALLKINL 246 (863)
Q Consensus 234 d-~~~R~~IL~~~l 246 (863)
+ .++-.+|+....
T Consensus 181 ~~~~~e~~lL~~~~ 194 (498)
T PRK13531 181 QDKANFRSMLTSQQ 194 (498)
T ss_pred CchHHHHHHHHccc
Confidence 7 566577877643
No 347
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.88 E-value=1.8e-05 Score=91.53 Aligned_cols=125 Identities=22% Similarity=0.291 Sum_probs=81.6
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccccc
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYR 783 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~ 783 (863)
.+.+++|.....+.+.+.+. .......+++|+|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 137 ~~~~lig~s~~~~~l~~~i~----------~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIE----------KIAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHH----------HHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 45568888877777776552 112233579999999999999999998775 46999999988643211
Q ss_pred chhHHHHHHHHHH---------------HHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC-----CCC
Q psy11009 784 GESEKLVRLLFEM---------------ARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL-----SSA 843 (863)
Q Consensus 784 Ge~e~~ir~lf~~---------------A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l-----~~~ 843 (863)
-..+|.. .....+++||||||+.+.. .++..|+..++.- ...
T Consensus 207 ------~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~------------~~q~~l~~~l~~~~~~~~~~~ 268 (445)
T TIGR02915 207 ------ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDLPL------------NLQAKLLRFLQERVIERLGGR 268 (445)
T ss_pred ------HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhCCH------------HHHHHHHHHHhhCeEEeCCCC
Confidence 1112210 0113468999999998854 3677777777532 111
Q ss_pred CCCCCceEEEEecCCC
Q psy11009 844 EDSSKVVMVLAATNFP 859 (863)
Q Consensus 844 ~~~~~~VvVIaTTN~P 859 (863)
......+.||+||+.+
T Consensus 269 ~~~~~~~rii~~~~~~ 284 (445)
T TIGR02915 269 EEIPVDVRIVCATNQD 284 (445)
T ss_pred ceeeeceEEEEecCCC
Confidence 1122357888998865
No 348
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.88 E-value=0.00013 Score=77.68 Aligned_cols=159 Identities=14% Similarity=0.076 Sum_probs=96.2
Q ss_pred ceeEeeecccccccCcCCCcccccccccccccchh--cccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccccee
Q psy11009 77 GNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLS--LVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIE 154 (863)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~ 154 (863)
-+||| |..|||||.+.|++... |-. +.+.++ ... .++.....++.+=
T Consensus 54 nvLL~---------G~rGtGKSSlVkall~~-y~~~GLRlIev------------~k~--~L~~l~~l~~~l~------- 102 (249)
T PF05673_consen 54 NVLLW---------GARGTGKSSLVKALLNE-YADQGLRLIEV------------SKE--DLGDLPELLDLLR------- 102 (249)
T ss_pred ceEEe---------cCCCCCHHHHHHHHHHH-HhhcCceEEEE------------CHH--HhccHHHHHHHHh-------
Confidence 47899 99999999999997764 111 112222 111 1222222222222
Q ss_pred eeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhh-ccCCCCCCeEEEEccCCCCCccH---------------
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR-LLTFPSTPVQYSIQKGIPWDIDE--------------- 218 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld-~~~~~~~~VivIaATN~p~~LD~--------------- 218 (863)
..+.+-|||+|++. |... +.--+.|-..|+ ++....++|++.||+||-.++-+
T Consensus 103 ----~~~~kFIlf~DDLs--Fe~~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~~~~~~eih~ 171 (249)
T PF05673_consen 103 ----DRPYKFILFCDDLS--FEEG-----DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDREDIQDDEIHP 171 (249)
T ss_pred ----cCCCCEEEEecCCC--CCCC-----cHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhccCCCccccCc
Confidence 45678899999754 3322 222245555564 45555669999999999554322
Q ss_pred --------HHhhccceEEEecCCCHHHHHHHHHHHhccCCCCCc-ccH----HHHhhhCCCCCHHHHHHHHH
Q psy11009 219 --------ALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPA-VDL----THIASQLDGYSGADITNVCR 277 (863)
Q Consensus 219 --------AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~d-vdl----~~LA~~TeG~SGADI~~lv~ 277 (863)
+|.-||-..|.|..||.++=++|++.|+....+.-+ .++ ..-|..-.|.||.--.++|.
T Consensus 172 ~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~~ 243 (249)
T PF05673_consen 172 SDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFID 243 (249)
T ss_pred chHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 334499999999999999999999999976654421 111 11233334566655555544
No 349
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.88 E-value=5.5e-05 Score=87.60 Aligned_cols=124 Identities=23% Similarity=0.284 Sum_probs=78.8
Q ss_pred cccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccc
Q psy11009 708 WDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRG 784 (863)
Q Consensus 708 ~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~G 784 (863)
+..++|.......+.+.+. ........+|++|++||||+++|+++.... +.+|+.++|..+.....
T Consensus 142 ~~~ii~~S~~~~~~~~~~~----------~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~- 210 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTA----------KIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL- 210 (457)
T ss_pred ccceecccHHHhHHHHHHH----------HHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH-
Confidence 3457777666665555442 222233589999999999999999997764 57999999988743211
Q ss_pred hhHHHHHHHHHH---------------HHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC-----CCCC
Q psy11009 785 ESEKLVRLLFEM---------------ARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL-----SSAE 844 (863)
Q Consensus 785 e~e~~ir~lf~~---------------A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l-----~~~~ 844 (863)
-..+|.. ......++|||||||.+.. .++..|+..++.- ....
T Consensus 211 -----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l~~------------~~q~~L~~~l~~~~~~~~~~~~ 273 (457)
T PRK11361 211 -----ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPL------------VLQAKLLRILQEREFERIGGHQ 273 (457)
T ss_pred -----HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhCCH------------HHHHHHHHHHhcCcEEeCCCCc
Confidence 1112110 1112367999999999854 3567777777532 1111
Q ss_pred CCCCceEEEEecCCC
Q psy11009 845 DSSKVVMVLAATNFP 859 (863)
Q Consensus 845 ~~~~~VvVIaTTN~P 859 (863)
.....+.||+|||.+
T Consensus 274 ~~~~~~rii~~t~~~ 288 (457)
T PRK11361 274 TIKVDIRIIAATNRD 288 (457)
T ss_pred eeeeceEEEEeCCCC
Confidence 122347899999865
No 350
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=1e-05 Score=87.98 Aligned_cols=130 Identities=17% Similarity=0.198 Sum_probs=87.4
Q ss_pred eecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHH-HHHhhcccc
Q psy11009 74 IRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLY-RSITNRGFY 152 (863)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~-r~i~~~~~~ 152 (863)
..|-+||. |+-||||||+|+..||+ +..|----| |-.++.+.|||+-..|+ .+++.
T Consensus 96 ~KSNILLi---------GPTGsGKTlLAqTLAk~----LnVPFaiAD------ATtLTEAGYVGEDVENillkLlq---- 152 (408)
T COG1219 96 SKSNILLI---------GPTGSGKTLLAQTLAKI----LNVPFAIAD------ATTLTEAGYVGEDVENILLKLLQ---- 152 (408)
T ss_pred eeccEEEE---------CCCCCcHHHHHHHHHHH----hCCCeeecc------ccchhhccccchhHHHHHHHHHH----
Confidence 35677888 99999999999999998 777765222 22345678999976654 23333
Q ss_pred eeeeccCCCCcEEEEEeccccccccccc-----chh-HhHHHHHHHHhhcc----------CCCCCCeEEEEccCCCC--
Q psy11009 153 IEDYEVSPPGPTLAVAKMFSSLAVQKLL-----RGS-KTFRTLCIHKYRLL----------TFPSTPVQYSIQKGIPW-- 214 (863)
Q Consensus 153 l~~~~~~~~~P~IlFiDEiDal~~~R~~-----~~~-~~v~n~lL~~ld~~----------~~~~~~VivIaATN~p~-- 214 (863)
-++|+.+++..-||||||+|.|+++-.+ +.+ .-|...||.-|.|. ..+...++-|=|||-..
T Consensus 153 aadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIc 232 (408)
T COG1219 153 AADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFIC 232 (408)
T ss_pred HcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEe
Confidence 3678878888889999999999977644 222 34666777777543 22333466666666533
Q ss_pred -----CccHHHhhccce
Q psy11009 215 -----DIDEALRRRLEK 226 (863)
Q Consensus 215 -----~LD~AllRRFD~ 226 (863)
-||.=+.+|...
T Consensus 233 gGAF~GlekiI~~R~~~ 249 (408)
T COG1219 233 GGAFAGLEKIIKKRLGK 249 (408)
T ss_pred ccccccHHHHHHHhccC
Confidence 445555555543
No 351
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.87 E-value=4.5e-05 Score=88.83 Aligned_cols=125 Identities=22% Similarity=0.244 Sum_probs=81.7
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccccc
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYR 783 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~ 783 (863)
.+.+++|.....+.+.+.+. ........+++.|++|||||++|+++.... +.+|+.++|..+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~----------~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~- 204 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIG----------RLSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDL- 204 (469)
T ss_pred ccccceecCHHHHHHHHHHH----------HHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH-
Confidence 45678888877777766552 222334579999999999999999998876 5799999998874321
Q ss_pred chhHHHHHHHHHH---------------HHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC-----CC
Q psy11009 784 GESEKLVRLLFEM---------------ARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS-----SA 843 (863)
Q Consensus 784 Ge~e~~ir~lf~~---------------A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~-----~~ 843 (863)
....+|.. .....+++|||||||.+.. .++..|+..++.-. ..
T Consensus 205 -----~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l~~------------~~q~~L~~~l~~~~~~~~~~~ 267 (469)
T PRK10923 205 -----IESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDMPL------------DVQTRLLRVLADGQFYRVGGY 267 (469)
T ss_pred -----HHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccCCH------------HHHHHHHHHHhcCcEEeCCCC
Confidence 11122211 0122367999999999854 35667777775321 11
Q ss_pred CCCCCceEEEEecCCC
Q psy11009 844 EDSSKVVMVLAATNFP 859 (863)
Q Consensus 844 ~~~~~~VvVIaTTN~P 859 (863)
......+.||+||+..
T Consensus 268 ~~~~~~~rii~~~~~~ 283 (469)
T PRK10923 268 APVKVDVRIIAATHQN 283 (469)
T ss_pred CeEEeeEEEEEeCCCC
Confidence 1112347888998764
No 352
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=97.86 E-value=3.2e-05 Score=85.22 Aligned_cols=134 Identities=23% Similarity=0.352 Sum_probs=90.2
Q ss_pred hcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccc
Q psy11009 701 QKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSST 777 (863)
Q Consensus 701 ~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~ 777 (863)
.......|+.|++.....+.+.+.. +....-...+|+.|.+||||.++|+++-... ..||+-++|..
T Consensus 196 ~~~~~~~F~~~v~~S~~mk~~v~qA----------~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~ 265 (511)
T COG3283 196 AAQDVSGFEQIVAVSPKMKHVVEQA----------QKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCAS 265 (511)
T ss_pred ccccccchHHHhhccHHHHHHHHHH----------HHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCC
Confidence 3446667888888887766665533 1111112369999999999999999986554 68999999977
Q ss_pred cccc-----ccchhH--HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh-c----CCCCCC
Q psy11009 778 LTSK-----YRGESE--KLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD-G----LSSAED 845 (863)
Q Consensus 778 l~~~-----~~Ge~e--~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD-~----l~~~~~ 845 (863)
+-.. ..|..+ +-...+|+.|. .+.+|+|||..+ +.+++..||..+. | +++..+
T Consensus 266 lPe~~aEsElFG~apg~~gk~GffE~An---gGTVlLDeIgEm------------Sp~lQaKLLRFL~DGtFRRVGee~E 330 (511)
T COG3283 266 LPEDAAESELFGHAPGDEGKKGFFEQAN---GGTVLLDEIGEM------------SPRLQAKLLRFLNDGTFRRVGEDHE 330 (511)
T ss_pred CchhHhHHHHhcCCCCCCCccchhhhcc---CCeEEeehhhhc------------CHHHHHHHHHHhcCCceeecCCcce
Confidence 6432 112111 22245677765 789999999544 4578999999885 2 233233
Q ss_pred CCCceEEEEecCCC
Q psy11009 846 SSKVVMVLAATNFP 859 (863)
Q Consensus 846 ~~~~VvVIaTTN~P 859 (863)
..-.|.|||||.++
T Consensus 331 v~vdVRVIcatq~n 344 (511)
T COG3283 331 VHVDVRVICATQVN 344 (511)
T ss_pred EEEEEEEEeccccc
Confidence 33458999999875
No 353
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.85 E-value=0.00011 Score=82.29 Aligned_cols=102 Identities=17% Similarity=0.205 Sum_probs=66.2
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCC------------------------cEEEEecccccccccchhHHHHHHHHH
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGT------------------------TFFNVCSSTLTSKYRGESEKLVRLLFE 795 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~------------------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~ 795 (863)
+.+-.+||+||+|+||+++|.++|..+-+ .++.+.+..- ...+ .-..+|.+.+
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~-~~~I--~idqiR~l~~ 98 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKG-KSSL--GVDAVREVTE 98 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccc-cccC--CHHHHHHHHH
Confidence 44568999999999999999999988732 1222221100 0001 1223344443
Q ss_pred HH----HhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 796 MA----RFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 796 ~A----~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.. ......|+|||++|.+.. ...|.||+.| +++...+++|.+|+.|+.|
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~------------~AaNaLLKtL------EEPp~~t~fiL~t~~~~~l 151 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTD------------AAANALLKTL------EEPPENTWFFLACREPARL 151 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCH------------HHHHHHHHHh------cCCCCCeEEEEEECChhhC
Confidence 33 334567999999998844 3578899988 4556678888888888754
No 354
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.84 E-value=6.4e-05 Score=84.36 Aligned_cols=106 Identities=17% Similarity=0.149 Sum_probs=67.1
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCc-------------------------EEEEeccccc--------------
Q psy11009 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGTT-------------------------FFNVCSSTLT-------------- 779 (863)
Q Consensus 739 ~~p~kgvLL~GPPGtGKT~LAraIA~el~~~-------------------------~i~vs~s~l~-------------- 779 (863)
++.+.++||+||+|+||+++|+.+|+.+.+. ++.+.+....
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 3555689999999999999999999887442 1112111000
Q ss_pred ----cc----c-cchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCC
Q psy11009 780 ----SK----Y-RGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDS 846 (863)
Q Consensus 780 ----~~----~-~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~ 846 (863)
++ . ..-.-..+|.+..... .....|++||++|.+.. ...|.||+.|+ ++
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~------------~AaNaLLKtLE------EP 159 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV------------AAANALLKTLE------EP 159 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH------------HHHHHHHHHhc------CC
Confidence 00 0 0001123444444332 23346999999998844 35788999884 45
Q ss_pred CCceEEEEecCCCCCC
Q psy11009 847 SKVVMVLAATNFPWEG 862 (863)
Q Consensus 847 ~~~VvVIaTTN~P~~I 862 (863)
...+++|.+|++|+.|
T Consensus 160 p~~t~fiL~t~~~~~L 175 (342)
T PRK06964 160 PPGTVFLLVSARIDRL 175 (342)
T ss_pred CcCcEEEEEECChhhC
Confidence 5668888888888765
No 355
>PRK04132 replication factor C small subunit; Provisional
Probab=97.84 E-value=4.4e-05 Score=94.06 Aligned_cols=98 Identities=22% Similarity=0.201 Sum_probs=70.0
Q ss_pred CCceEEEEC--CCCCChHHHHHHHHHHh-----CCcEEEEecccccccccchhHHHHHHHHHHHHhC------CCeEEEE
Q psy11009 741 PWKGVLMVG--PPGTGKTMLAKAVATEC-----GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFY------APSTIFI 807 (863)
Q Consensus 741 p~kgvLL~G--PPGtGKT~LAraIA~el-----~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~------~p~ILfI 807 (863)
|.-+-+..| |++.|||++|+++|+++ +..++++++++..+. ..++.+...+... ...|+||
T Consensus 563 ~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgi------d~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 563 PGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGI------NVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred CchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccH------HHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 334556678 99999999999999998 568999999985321 2344444332211 2369999
Q ss_pred cCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 808 DEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 808 DEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
||+|.|.. ..++.|+..|+. +..++.+|++||.|+.|
T Consensus 637 DEaD~Lt~------------~AQnALLk~lEe------p~~~~~FILi~N~~~kI 673 (846)
T PRK04132 637 DEADALTQ------------DAQQALRRTMEM------FSSNVRFILSCNYSSKI 673 (846)
T ss_pred ECcccCCH------------HHHHHHHHHhhC------CCCCeEEEEEeCChhhC
Confidence 99999943 257788888854 33457889999998765
No 356
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=97.79 E-value=0.00021 Score=84.09 Aligned_cols=67 Identities=7% Similarity=0.030 Sum_probs=45.8
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhh-cc---------CCCCCCeEEEEccCCC------C-----------
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR-LL---------TFPSTPVQYSIQKGIP------W----------- 214 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld-~~---------~~~~~~VivIaATN~p------~----------- 214 (863)
...||||||++.+. ..+...|+.-|+ +. .....++.+|+|||.- +
T Consensus 295 ~~GvLfLDEi~e~~--------~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~ 366 (499)
T TIGR00368 295 HNGVLFLDELPEFK--------RSVLDALREPIEDGSISISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQ 366 (499)
T ss_pred CCCeEecCChhhCC--------HHHHHHHHHHHHcCcEEEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHH
Confidence 34699999999764 234455555442 21 0112378999999962 1
Q ss_pred ------CccHHHhhccceEEEecCCCHH
Q psy11009 215 ------DIDEALRRRLEKRIYIPLPSKA 236 (863)
Q Consensus 215 ------~LD~AllRRFD~~I~i~lPd~~ 236 (863)
.|...|+.|||.++.++.++..
T Consensus 367 ~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 367 ISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred HHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 4888899999999999977544
No 357
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.74 E-value=0.00022 Score=83.88 Aligned_cols=65 Identities=9% Similarity=0.040 Sum_probs=46.3
Q ss_pred EEEEEecccccccccccchhHhHHHHHHHHh-hcc------C---CCCCCeEEEEccCCCC-------------------
Q psy11009 164 TLAVAKMFSSLAVQKLLRGSKTFRTLCIHKY-RLL------T---FPSTPVQYSIQKGIPW------------------- 214 (863)
Q Consensus 164 ~IlFiDEiDal~~~R~~~~~~~v~n~lL~~l-d~~------~---~~~~~VivIaATN~p~------------------- 214 (863)
-|||+||++.+- ..++..|+.-| ++. . ....++.+|||+|...
T Consensus 296 GvLfLDEi~e~~--------~~~~~~L~~~LE~g~v~I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y 367 (506)
T PRK09862 296 GVLFLDELPEFE--------RRTLDALREPIESGQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRY 367 (506)
T ss_pred CEEecCCchhCC--------HHHHHHHHHHHHcCcEEEecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHH
Confidence 499999998753 34556666555 221 0 1123789999999853
Q ss_pred --CccHHHhhccceEEEecCCCHH
Q psy11009 215 --DIDEALRRRLEKRIYIPLPSKA 236 (863)
Q Consensus 215 --~LD~AllRRFD~~I~i~lPd~~ 236 (863)
.|..+++-|||.++.++.|+.+
T Consensus 368 ~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 368 LNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred HhhCCHhHHhhccEEEEeCCCCHH
Confidence 4777999999999999988644
No 358
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.74 E-value=4.2e-05 Score=80.74 Aligned_cols=111 Identities=23% Similarity=0.238 Sum_probs=57.7
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc--ccc--------cccchhHHHHHHHHHHHH--hCCCeEEE
Q psy11009 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST--LTS--------KYRGESEKLVRLLFEMAR--FYAPSTIF 806 (863)
Q Consensus 739 ~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~--l~~--------~~~Ge~e~~ir~lf~~A~--~~~p~ILf 806 (863)
.+.+..+||||+||+|||++|+.++.. .-++..+.+. +.+ .-....-..+.+.+.... ...+.+|+
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVV 86 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIV 86 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEE
Confidence 343467999999999999999999732 2222222211 000 000111112222222222 34578999
Q ss_pred EcCCCcccc------cCCCCc---hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q psy11009 807 IDEIDSLCS------RRGSES---EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLA 854 (863)
Q Consensus 807 IDEID~l~~------~R~~~~---~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIa 854 (863)
||.|+.+.. .|.... ....-.++...|+..|..+.. .+.+|++++
T Consensus 87 IDsI~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~---~g~nII~tA 140 (220)
T TIGR01618 87 IDNISALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKE---SNKNIYATA 140 (220)
T ss_pred EecHHHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHh---CCCcEEEEE
Confidence 999998754 221111 122233456667766666543 234566655
No 359
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00021 Score=79.66 Aligned_cols=105 Identities=20% Similarity=0.218 Sum_probs=64.5
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCc---------------------EEEEe--cccccccc-cchhHHHHHHHHH
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTT---------------------FFNVC--SSTLTSKY-RGESEKLVRLLFE 795 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~~---------------------~i~vs--~s~l~~~~-~Ge~e~~ir~lf~ 795 (863)
+-+..+||+||+|+||+++|.++|..+.+. ++.+. +..-..+. ..-.-..+|.+.+
T Consensus 24 rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~~ 103 (319)
T PRK08769 24 RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREISQ 103 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHHH
Confidence 344579999999999999999999887321 22221 10000000 0001223455554
Q ss_pred HHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 796 MARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 796 ~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
.+.. ....|++||++|.+.. ...|.||+.|+ ++...+++|.+|+.|+.|
T Consensus 104 ~~~~~p~~g~~kV~iI~~ae~m~~------------~AaNaLLKtLE------EPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 104 KLALTPQYGIAQVVIVDPADAINR------------AACNALLKTLE------EPSPGRYLWLISAQPARL 156 (319)
T ss_pred HHhhCcccCCcEEEEeccHhhhCH------------HHHHHHHHHhh------CCCCCCeEEEEECChhhC
Confidence 4432 2346999999999843 35788999884 445567788888887764
No 360
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=97.70 E-value=7.1e-05 Score=89.89 Aligned_cols=105 Identities=19% Similarity=0.180 Sum_probs=66.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC--CcEEEEecccccccccchhHHHHHHHHHHH---------HhCCCeEEEEcCC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSSTLTSKYRGESEKLVRLLFEMA---------RFYAPSTIFIDEI 810 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~--~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A---------~~~~p~ILfIDEI 810 (863)
..+|||.|+||||||++|++++..++ .+|+.+.........+|... +...+... .....++||||||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~id--l~~~~~~g~~~~~~G~L~~A~~GvL~lDEi 93 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGID--VEESLAGGQRVTQPGLLDEAPRGVLYVDMA 93 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchh--hhhhhhcCcccCCCCCeeeCCCCcEeccch
Confidence 46999999999999999999999875 46888875433333344321 01001000 0122469999999
Q ss_pred CcccccCCCCchhhHHHHHHHHHHHHHhcCC-------CCCCCCCceEEEEecCCCC
Q psy11009 811 DSLCSRRGSESEHEASRRVKSELLVQMDGLS-------SAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 811 D~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~-------~~~~~~~~VvVIaTTN~P~ 860 (863)
+.+.+ .+++.|+..|+.-. ........+.||+|+|..+
T Consensus 94 ~rl~~------------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e 138 (589)
T TIGR02031 94 NLLDD------------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE 138 (589)
T ss_pred hhCCH------------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc
Confidence 88844 47888888886321 1111224578888888654
No 361
>PRK15115 response regulator GlrR; Provisional
Probab=97.70 E-value=0.00011 Score=84.98 Aligned_cols=122 Identities=24% Similarity=0.280 Sum_probs=76.1
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchh
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGES 786 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~ 786 (863)
.++|.....+.+.+.+. ........++|+|++|||||++|+++.... +.+|+.++|..+.....
T Consensus 135 ~lig~s~~~~~~~~~~~----------~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~--- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQAR----------MVAQSDVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLL--- 201 (444)
T ss_pred cccccCHHHHHHHHHHH----------hhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHH---
Confidence 45666555555444332 111223479999999999999999998775 57999999987643211
Q ss_pred HHHHHHHHHH---------------HHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC-----CCCCCC
Q psy11009 787 EKLVRLLFEM---------------ARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL-----SSAEDS 846 (863)
Q Consensus 787 e~~ir~lf~~---------------A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l-----~~~~~~ 846 (863)
-..+|.. ......++|||||||.+.. ..+..|+..++.- ......
T Consensus 202 ---~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~------------~~q~~L~~~l~~~~~~~~g~~~~~ 266 (444)
T PRK15115 202 ---ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA------------PLQVKLLRVLQERKVRPLGSNRDI 266 (444)
T ss_pred ---HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCH------------HHHHHHHHHHhhCCEEeCCCCcee
Confidence 1122211 1122367999999999854 3566777777532 111112
Q ss_pred CCceEEEEecCCC
Q psy11009 847 SKVVMVLAATNFP 859 (863)
Q Consensus 847 ~~~VvVIaTTN~P 859 (863)
...+.+|+||+++
T Consensus 267 ~~~~rii~~~~~~ 279 (444)
T PRK15115 267 DIDVRIISATHRD 279 (444)
T ss_pred eeeEEEEEeCCCC
Confidence 2357889999864
No 362
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.00024 Score=85.49 Aligned_cols=170 Identities=14% Similarity=0.091 Sum_probs=99.5
Q ss_pred CcCCCccccccccccc-ccchhcc-cch----hhhccCcchhHHHHHHH-------hhhhhH---HHHHHHHhhccccee
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLV-LPL----LAEEHGKLKFKEAITLA-------LTVGSS---LNLYRSITNRGFYIE 154 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~-~~~----l~~~~gk~s~~e~~~~~-------~~vg~s---e~~~r~i~~~~~~l~ 154 (863)
|.||||||++|+..|+ +|+-.-. -|- ...--|++ -.|....+ .+-|.+ ...+|.+.++..+--
T Consensus 45 Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C-~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P 123 (620)
T PRK14954 45 GLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC-ESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGP 123 (620)
T ss_pred CCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC-HHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhh
Confidence 9999999999999999 4442100 010 00112222 11111100 011222 345666665432211
Q ss_pred eeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCC
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPS 234 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd 234 (863)
|. ...-|++|||+|.+-. .-.|.||.-|.. +...+++|.+|+.+..|-+++..|. ..|+|..++
T Consensus 124 -~~---~~~KVvIIdEad~Lt~--------~a~naLLK~LEe---Pp~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~ 187 (620)
T PRK14954 124 -QK---GRYRVYIIDEVHMLST--------AAFNAFLKTLEE---PPPHAIFIFATTELHKIPATIASRC-QRFNFKRIP 187 (620)
T ss_pred -hc---CCCEEEEEeChhhcCH--------HHHHHHHHHHhC---CCCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCC
Confidence 22 2334899999998842 234667766654 3335666667777888888888887 579999999
Q ss_pred HHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHH
Q psy11009 235 KAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRD 278 (863)
Q Consensus 235 ~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~ 278 (863)
..+-..+++..+++.... .+-.++.|+..+.| +..++.+.+..
T Consensus 188 ~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G-dlr~al~eLeK 231 (620)
T PRK14954 188 LDEIQSQLQMICRAEGIQIDADALQLIARKAQG-SMRDAQSILDQ 231 (620)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 999888888877644332 23446778877764 44544444443
No 363
>PRK09862 putative ATP-dependent protease; Provisional
Probab=97.69 E-value=6.2e-05 Score=88.36 Aligned_cols=124 Identities=23% Similarity=0.266 Sum_probs=71.6
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC----CcEEEEec------c
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG----TTFFNVCS------S 776 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~----~~~i~vs~------s 776 (863)
.+.++.|...+++.+.-.+ ....+++|+||||||||++++.++..+. ...+++.. .
T Consensus 189 d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~ 254 (506)
T PRK09862 189 DLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNA 254 (506)
T ss_pred CeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhcc
Confidence 5667888887777654322 1335899999999999999999987652 11222211 0
Q ss_pred -----ccc-------------ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh
Q psy11009 777 -----TLT-------------SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 777 -----~l~-------------~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD 838 (863)
.+. ...+|.........+..| ..++||+||++.+. ..++..|+..|+
T Consensus 255 ~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A---~gGvLfLDEi~e~~------------~~~~~~L~~~LE 319 (506)
T PRK09862 255 ESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLA---HNGVLFLDELPEFE------------RRTLDALREPIE 319 (506)
T ss_pred ccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhc---cCCEEecCCchhCC------------HHHHHHHHHHHH
Confidence 000 001121111111223333 36799999997652 357777777774
Q ss_pred cCC-------CCCCCCCceEEEEecCCC
Q psy11009 839 GLS-------SAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 839 ~l~-------~~~~~~~~VvVIaTTN~P 859 (863)
.-. ........+.+|+|+|..
T Consensus 320 ~g~v~I~r~g~~~~~pa~f~lIAa~NP~ 347 (506)
T PRK09862 320 SGQIHLSRTRAKITYPARFQLVAAMNPS 347 (506)
T ss_pred cCcEEEecCCcceeccCCEEEEEeecCc
Confidence 221 111123458999999974
No 364
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.68 E-value=0.00018 Score=80.36 Aligned_cols=106 Identities=18% Similarity=0.182 Sum_probs=64.6
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCC-------------------------cEEEEecccc---cccc-cchhHHH
Q psy11009 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGT-------------------------TFFNVCSSTL---TSKY-RGESEKL 789 (863)
Q Consensus 739 ~~p~kgvLL~GPPGtGKT~LAraIA~el~~-------------------------~~i~vs~s~l---~~~~-~Ge~e~~ 789 (863)
++.+..+||+||+|+|||++|+.+|+.+.+ .|+.+.+..- .++. ..-.-..
T Consensus 18 ~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~ 97 (325)
T PRK08699 18 ERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDA 97 (325)
T ss_pred CCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHH
Confidence 345568999999999999999999998732 2444433210 0000 0012334
Q ss_pred HHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 790 VRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 790 ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
+|.+.+.+.. ....|++||+++.+.. ...+.|++.|+... ..+.+|.+|+.|..+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~------------~a~naLLk~LEep~------~~~~~Ilvth~~~~l 156 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNL------------QAANSLLKVLEEPP------PQVVFLLVSHAADKV 156 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCH------------HHHHHHHHHHHhCc------CCCEEEEEeCChHhC
Confidence 5666655543 3346999999998843 35677888776542 124456677776543
No 365
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00034 Score=77.88 Aligned_cols=102 Identities=14% Similarity=0.135 Sum_probs=66.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCC-----------------------cEEEEecccccccccchhHHHHHHHHHH
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGT-----------------------TFFNVCSSTLTSKYRGESEKLVRLLFEM 796 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~-----------------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~ 796 (863)
+.+..+||+||.|+||+.+|+++|..+.+ .|+.+.+.. .++.+ .-..+|.+.+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~I--~vdqiR~l~~~ 99 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKSI--TVEQIRQCNRL 99 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCcC--CHHHHHHHHHH
Confidence 44468999999999999999999988732 122232211 01111 12234444443
Q ss_pred HH----hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 797 AR----FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 797 A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
+. .....|++||++|.+.. ...|.||+.++ ++...+++|.+|+.|+.|
T Consensus 100 ~~~~~~~~~~kV~iI~~ae~m~~------------~AaNaLLKtLE------EPp~~t~fiL~t~~~~~l 151 (319)
T PRK06090 100 AQESSQLNGYRLFVIEPADAMNE------------SASNALLKTLE------EPAPNCLFLLVTHNQKRL 151 (319)
T ss_pred HhhCcccCCceEEEecchhhhCH------------HHHHHHHHHhc------CCCCCeEEEEEECChhhC
Confidence 32 23357999999998843 35788999883 456668888888887654
No 366
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.67 E-value=0.0001 Score=83.37 Aligned_cols=101 Identities=24% Similarity=0.296 Sum_probs=57.1
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCC-cEEEEecccccc-------cccchhHHHHHHHHHHHHhCCCeEEEEcCCC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGT-TFFNVCSSTLTS-------KYRGESEKLVRLLFEMARFYAPSTIFIDEID 811 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~-~~i~vs~s~l~~-------~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID 811 (863)
.+++|+.|+||+|+|||+|.-++...+.. .-.++..-.++. .+.|........+-+. .....+|+|||+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l--~~~~~lLcfDEF~ 137 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADEL--AKESRLLCFDEFQ 137 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHH--HhcCCEEEEeeee
Confidence 56799999999999999999999888754 111111111111 0111111111111111 1233499999986
Q ss_pred cccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 812 SLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 812 ~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
-- +-..-.++..|+..+= ...|++|+|+|+|
T Consensus 138 V~---------DiaDAmil~rLf~~l~--------~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 138 VT---------DIADAMILKRLFEALF--------KRGVVLVATSNRP 168 (362)
T ss_pred cc---------chhHHHHHHHHHHHHH--------HCCCEEEecCCCC
Confidence 43 1222346666666551 1237899999986
No 367
>smart00350 MCM minichromosome maintenance proteins.
Probab=97.67 E-value=4.9e-05 Score=89.86 Aligned_cols=134 Identities=20% Similarity=0.204 Sum_probs=72.4
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCc-EEEE---ecccccccccc
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTT-FFNV---CSSTLTSKYRG 784 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~-~i~v---s~s~l~~~~~G 784 (863)
.|.|.+.+|..|.-.+.--.. +..-.+.. +..-++||+|+||||||++|+++++..... |+.. ++..+......
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 489999998888765531110 00001111 222389999999999999999999987533 2221 22122111100
Q ss_pred hh---HHHH-HHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC----C---CCCCCCceEEE
Q psy11009 785 ES---EKLV-RLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS----S---AEDSSKVVMVL 853 (863)
Q Consensus 785 e~---e~~i-r~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~----~---~~~~~~~VvVI 853 (863)
.. +..+ ...+. ....++++|||+|.+.. ..+..|+..|+.-. . ...-...+.||
T Consensus 283 ~~~~g~~~~~~G~l~---~A~~Gil~iDEi~~l~~------------~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~vi 347 (509)
T smart00350 283 DPETREFTLEGGALV---LADNGVCCIDEFDKMDD------------SDRTAIHEAMEQQTISIAKAGITTTLNARCSVL 347 (509)
T ss_pred ccCcceEEecCccEE---ecCCCEEEEechhhCCH------------HHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEE
Confidence 00 0000 00011 12367999999998843 35666676774311 0 01112457899
Q ss_pred EecCCC
Q psy11009 854 AATNFP 859 (863)
Q Consensus 854 aTTN~P 859 (863)
||+|.-
T Consensus 348 Aa~NP~ 353 (509)
T smart00350 348 AAANPI 353 (509)
T ss_pred EEeCCC
Confidence 999964
No 368
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.66 E-value=0.00026 Score=73.41 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=49.7
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc-c----------------------chhHHHHHHH
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY-R----------------------GESEKLVRLL 793 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~-~----------------------Ge~e~~ir~l 793 (863)
.+..-++++||||||||+++..++... +..+++++...+.... . .+....+..+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l 89 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQKT 89 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHHHH
Confidence 344567899999999999999887654 6678888876421110 0 0011123334
Q ss_pred HHHHHhCCCeEEEEcCCCcccc
Q psy11009 794 FEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 794 f~~A~~~~p~ILfIDEID~l~~ 815 (863)
........+++|+||-+..+..
T Consensus 90 ~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 90 SKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHhhcCccEEEEeCcHHHhH
Confidence 4444445789999999999864
No 369
>PRK04132 replication factor C small subunit; Provisional
Probab=97.63 E-value=0.00037 Score=86.16 Aligned_cols=143 Identities=13% Similarity=0.068 Sum_probs=93.4
Q ss_pred ccchhcccchhhhccCcchhHHHHHHHhhhh--------------hHHHHHHHHhhcccceeeeccCCCCcEEEEEeccc
Q psy11009 107 MNFLSLVLPLLAEEHGKLKFKEAITLALTVG--------------SSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFS 172 (863)
Q Consensus 107 ~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg--------------~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiD 172 (863)
.||++=.+|.| .||||++.|++-.++-. ....-+|+++..+.....+ .....-|+||||+|
T Consensus 566 ~~~~~G~lPh~---lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~~--~~~~~KVvIIDEaD 640 (846)
T PRK04132 566 HNFIGGNLPTV---LHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPI--GGASFKIIFLDEAD 640 (846)
T ss_pred hhhhcCCCCCc---ccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCCc--CCCCCEEEEEECcc
Confidence 45555455655 36666666666555211 1234577777643111101 11134799999999
Q ss_pred ccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC
Q psy11009 173 SLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD 252 (863)
Q Consensus 173 al~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~ 252 (863)
.+- ....+.|+..|.. +..++.+|.+||.++.|-+++..|. ..|.|++|+.++-...|+....+..+.
T Consensus 641 ~Lt--------~~AQnALLk~lEe---p~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~~Egi~ 708 (846)
T PRK04132 641 ALT--------QDAQQALRRTMEM---FSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGLE 708 (846)
T ss_pred cCC--------HHHHHHHHHHhhC---CCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHHhcCCC
Confidence 884 2346777777754 3337889999999999999998897 678999999988888888777543332
Q ss_pred -CcccHHHHhhhCCC
Q psy11009 253 -PAVDLTHIASQLDG 266 (863)
Q Consensus 253 -~dvdl~~LA~~TeG 266 (863)
++-.+..||..+.|
T Consensus 709 i~~e~L~~Ia~~s~G 723 (846)
T PRK04132 709 LTEEGLQAILYIAEG 723 (846)
T ss_pred CCHHHHHHHHHHcCC
Confidence 24457778877765
No 370
>KOG0989|consensus
Probab=97.63 E-value=0.00013 Score=79.50 Aligned_cols=154 Identities=16% Similarity=0.089 Sum_probs=90.2
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchh----HHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEE
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKF----KEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLA 166 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~----~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~Il 166 (863)
|+||||||.+|.+-++- +.+|.++-. |-+++ .--+ + .|++-.+++.++..... +--....+.+-|+
T Consensus 64 GPpGTGKTStalafar~----L~~~~~~~~-rvl~lnaSderGi--s-vvr~Kik~fakl~~~~~--~~~~~~~~~fKii 133 (346)
T KOG0989|consen 64 GPPGTGKTSTALAFARA----LNCEQLFPC-RVLELNASDERGI--S-VVREKIKNFAKLTVLLK--RSDGYPCPPFKII 133 (346)
T ss_pred CCCCCcHhHHHHHHHHH----hcCcccccc-chhhhcccccccc--c-chhhhhcCHHHHhhccc--cccCCCCCcceEE
Confidence 99999999999999996 445555211 11100 0000 0 35555555555554321 0011233334699
Q ss_pred EEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHh
Q psy11009 167 VAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINL 246 (863)
Q Consensus 167 FiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l 246 (863)
.|||+|++-. ...+.|..-|+.... .+.+|.-||.++.|-+-+..|-.+-.+=+++|...-..+-.+.-
T Consensus 134 IlDEcdsmts--------daq~aLrr~mE~~s~---~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~ 202 (346)
T KOG0989|consen 134 ILDECDSMTS--------DAQAALRRTMEDFSR---TTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIAS 202 (346)
T ss_pred EEechhhhhH--------HHHHHHHHHHhcccc---ceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHH
Confidence 9999998853 345677777776443 57888889999988888887776544445666554444333333
Q ss_pred -ccCCCCCcccHHHHhhhCCC
Q psy11009 247 -KEVKVDPAVDLTHIASQLDG 266 (863)
Q Consensus 247 -~~~~l~~dvdl~~LA~~TeG 266 (863)
.+++++ +-.++.||+.++|
T Consensus 203 ~E~v~~d-~~al~~I~~~S~G 222 (346)
T KOG0989|consen 203 KEGVDID-DDALKLIAKISDG 222 (346)
T ss_pred HhCCCCC-HHHHHHHHHHcCC
Confidence 233333 2235667776554
No 371
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.61 E-value=0.0004 Score=70.17 Aligned_cols=71 Identities=27% Similarity=0.360 Sum_probs=45.7
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc------cc-------------------------hhH---
Q psy11009 745 VLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY------RG-------------------------ESE--- 787 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~------~G-------------------------e~e--- 787 (863)
+|++||||||||+++..++.+. |.++++++..+-...+ .| +..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~~~ 81 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSLRL 81 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHHHHHHHcCCChHHHHhcCCeEEEecCccccchhhhhhhH
Confidence 6899999999999998886654 6677777653211100 00 000
Q ss_pred HHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 788 KLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 788 ~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
.....+...+....|.+|+||++..+..
T Consensus 82 ~~~~~i~~~~~~~~~~~lviD~~~~~~~ 109 (187)
T cd01124 82 ELIQRLKDAIEEFKAKRVVIDSVSGLLL 109 (187)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCcHHHhh
Confidence 1123444444557899999999988754
No 372
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.60 E-value=0.00026 Score=77.64 Aligned_cols=196 Identities=14% Similarity=0.140 Sum_probs=121.3
Q ss_pred ccccccceeecc-eeEeeecccccccCcCCCccccccccccccc---------chhcccchhhhccCcchhHHHHHHHhh
Q psy11009 66 SVFLLPKAIRIG-NLTFIFGSEFQSEPVVGSGTYLKHKSPIKMN---------FLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 66 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
.|+.-|.+.|+= .|++ |-.+.|||.+++--.++. -+-+..-..-..++--.|-.++-.++.
T Consensus 51 ~Ll~~P~~~Rmp~lLiv---------G~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 51 ELLEYPKRHRMPNLLIV---------GDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHhCCcccCCCceEEe---------cCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 456689999965 4555 889999999876544311 011111122234566677788888888
Q ss_pred hhh--------HHHHHHHHhhcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCC-CCCeEE
Q psy11009 136 VGS--------SLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFP-STPVQY 206 (863)
Q Consensus 136 vg~--------se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~-~~~Viv 206 (863)
+|. .+..+..++. .-++-+|.|||+-.++..+ .+-..++|..|..+... .-.+|.
T Consensus 122 aP~~~~~~~~~~~~~~~~llr-----------~~~vrmLIIDE~H~lLaGs-----~~~qr~~Ln~LK~L~NeL~ipiV~ 185 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLR-----------RLGVRMLIIDEFHNLLAGS-----YRKQREFLNALKFLGNELQIPIVG 185 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHH-----------HcCCcEEEeechHHHhccc-----HHHHHHHHHHHHHHhhccCCCeEE
Confidence 775 2444555563 4567799999999876422 12234455555444322 214555
Q ss_pred EEccCC--CCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC--CcccH----HHHhhhCCCCCHHHHHHHHHH
Q psy11009 207 SIQKGI--PWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD--PAVDL----THIASQLDGYSGADITNVCRD 278 (863)
Q Consensus 207 IaATN~--p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~--~dvdl----~~LA~~TeG~SGADI~~lv~~ 278 (863)
+|+--- .=.-|+-+-+||+....=.-..-++-..++..+-..+++. .++.- ..|-..|+|.+| +|..+++.
T Consensus 186 vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG-~l~~ll~~ 264 (302)
T PF05621_consen 186 VGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIG-ELSRLLNA 264 (302)
T ss_pred eccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchH-HHHHHHHH
Confidence 654322 2245888888998754422222334456778887777765 23332 456677888776 67788899
Q ss_pred HHHHHHHhh
Q psy11009 279 ASMMSMRRK 287 (863)
Q Consensus 279 Aal~air~~ 287 (863)
||..|++.+
T Consensus 265 aA~~AI~sG 273 (302)
T PF05621_consen 265 AAIAAIRSG 273 (302)
T ss_pred HHHHHHhcC
Confidence 999999987
No 373
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.59 E-value=8.3e-05 Score=89.57 Aligned_cols=87 Identities=25% Similarity=0.311 Sum_probs=65.5
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc----EEEE-ecc-
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT----FFNV-CSS- 776 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~----~i~v-s~s- 776 (863)
.|..-+++++|++++++.+...+. ..++++|+||||||||++++++++.++.. ++++ ++.
T Consensus 12 ~~~~~~~~viG~~~a~~~l~~a~~--------------~~~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~ 77 (608)
T TIGR00764 12 VPERLIDQVIGQEEAVEIIKKAAK--------------QKRNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPED 77 (608)
T ss_pred cchhhHhhccCHHHHHHHHHHHHH--------------cCCCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCC
Confidence 355678899999999999888773 12489999999999999999999999654 2222 332
Q ss_pred ----cccccccchhHHHHHHHHHHHHhCCCe
Q psy11009 777 ----TLTSKYRGESEKLVRLLFEMARFYAPS 803 (863)
Q Consensus 777 ----~l~~~~~Ge~e~~ir~lf~~A~~~~p~ 803 (863)
.+...+.|..++.++..|..|+...|+
T Consensus 78 ~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~ 108 (608)
T TIGR00764 78 PNMPRIVEVPAGEGREIVEDYKKKAFKQPSS 108 (608)
T ss_pred CchHHHHHHHHhhchHHHHHHHHHhhcccch
Confidence 233345677788899999998876664
No 374
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.00038 Score=78.58 Aligned_cols=96 Identities=6% Similarity=-0.023 Sum_probs=67.6
Q ss_pred CCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHH
Q psy11009 159 SPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGR 238 (863)
Q Consensus 159 ~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R 238 (863)
...+.-|++|||+|.+- ..-.|.||..|.... .++++|..|+.|+.|.|.++.|. .++.+++|+.++-
T Consensus 138 ~~g~~rVviIDeAd~l~--------~~aanaLLk~LEEpp---~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~ 205 (351)
T PRK09112 138 GDGNWRIVIIDPADDMN--------RNAANAILKTLEEPP---ARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDEL 205 (351)
T ss_pred ccCCceEEEEEchhhcC--------HHHHHHHHHHHhcCC---CCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHH
Confidence 34567799999999883 334577887775432 35666777888999999988799 6999999999999
Q ss_pred HHHHHHHhccCCCCCcccHHHHhhhCCCC
Q psy11009 239 EALLKINLKEVKVDPAVDLTHIASQLDGY 267 (863)
Q Consensus 239 ~~IL~~~l~~~~l~~dvdl~~LA~~TeG~ 267 (863)
..+|+.......++ +-.+..++..+.|-
T Consensus 206 ~~~L~~~~~~~~~~-~~~~~~i~~~s~G~ 233 (351)
T PRK09112 206 KKALSHLGSSQGSD-GEITEALLQRSKGS 233 (351)
T ss_pred HHHHHHhhcccCCC-HHHHHHHHHHcCCC
Confidence 99998743222211 22255666666653
No 375
>KOG2227|consensus
Probab=97.56 E-value=0.0006 Score=77.85 Aligned_cols=236 Identities=15% Similarity=0.080 Sum_probs=138.0
Q ss_pred ccccceeecceeEeeecccccccCcCCCcccccccccc-------------cccchhcccch-hhhccCcchhHHHHHHH
Q psy11009 68 FLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPI-------------KMNFLSLVLPL-LAEEHGKLKFKEAITLA 133 (863)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-------------~~~~~~~~~~~-l~~~~gk~s~~e~~~~~ 133 (863)
|.+++..-.+--+|+- |.||+|||.+-..+- -.|+.|+..|- +|..+ ...+-..
T Consensus 166 ~~~hle~~t~gSlYVs-------G~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI-----~~~~~q~ 233 (529)
T KOG2227|consen 166 FSLHLELNTSGSLYVS-------GQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKI-----FSSLLQD 233 (529)
T ss_pred HHhhhhcccCcceEee-------CCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHH-----HHHHHHH
Confidence 4478888887778866 689999998765221 13444433221 11100 0000001
Q ss_pred hhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCC
Q psy11009 134 LTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIP 213 (863)
Q Consensus 134 ~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p 213 (863)
+.-+-.+.+....|.+- ......|-|+++||+|.|+.++ .+++-++. ++..+. ..++++||-.|-.
T Consensus 234 ~~s~~~~~~~~~~~~~h------~~q~k~~~llVlDEmD~L~tr~-----~~vLy~lF-ewp~lp--~sr~iLiGiANsl 299 (529)
T KOG2227|consen 234 LVSPGTGMQHLEKFEKH------TKQSKFMLLLVLDEMDHLITRS-----QTVLYTLF-EWPKLP--NSRIILIGIANSL 299 (529)
T ss_pred hcCCchhHHHHHHHHHH------HhcccceEEEEechhhHHhhcc-----cceeeeeh-hcccCC--cceeeeeeehhhh
Confidence 11112223333444331 1223378999999999999543 22222222 334333 4479999999999
Q ss_pred CCccHHHhh-cc-----ceEEEecCCCHHHHHHHHHHHhccCCCCCc--ccHHHHhhhCCCCCHHH--HHHHHHHHHHHH
Q psy11009 214 WDIDEALRR-RL-----EKRIYIPLPSKAGREALLKINLKEVKVDPA--VDLTHIASQLDGYSGAD--ITNVCRDASMMS 283 (863)
Q Consensus 214 ~~LD~AllR-RF-----D~~I~i~lPd~~~R~~IL~~~l~~~~l~~d--vdl~~LA~~TeG~SGAD--I~~lv~~Aal~a 283 (863)
|+-|..|.| +. .+.+.|++=+.++..+||+.-+...+.... ..++-+|++..|.||-- .-.+|+.|.-.+
T Consensus 300 DlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 300 DLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIA 379 (529)
T ss_pred hHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 999999999 55 467899999999999999999987765533 34778999999999832 223455443322
Q ss_pred HHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhh
Q psy11009 284 MRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLE 330 (863)
Q Consensus 284 ir~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~ 330 (863)
-.+... +...............+|..+++..++.++-.+.......
T Consensus 380 E~e~r~-~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~s~~ 425 (529)
T KOG2227|consen 380 EIEKRK-ILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSARSRE 425 (529)
T ss_pred HHHHhh-ccccCCCCCCCcccccccchHHHHHHhhhhccChhhhhhh
Confidence 222211 1111111111111124677999999999987775554443
No 376
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.53 E-value=2.2e-05 Score=75.93 Aligned_cols=106 Identities=15% Similarity=0.143 Sum_probs=53.6
Q ss_pred cCcCCCccccccccccc---ccchhccc-chhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeee--ccCCCCc
Q psy11009 90 EPVVGSGTYLKHKSPIK---MNFLSLVL-PLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDY--EVSPPGP 163 (863)
Q Consensus 90 ~~~~~~g~~~~~~~~~~---~~~~~~~~-~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~--~~~~~~P 163 (863)
||+||+|||++|++.|+ +.|.-+.. |.| .-+. .+|.. +++... ++| ....---
T Consensus 5 eg~PG~GKT~la~~lA~~~~~~f~RIq~tpdl---------lPsD----i~G~~------v~~~~~--~~f~~~~GPif~ 63 (131)
T PF07726_consen 5 EGVPGVGKTTLAKALARSLGLSFKRIQFTPDL---------LPSD----ILGFP------VYDQET--GEFEFRPGPIFT 63 (131)
T ss_dssp ES---HHHHHHHHHHHHHTT--EEEEE--TT-----------HHH----HHEEE------EEETTT--TEEEEEE-TT-S
T ss_pred ECCCccHHHHHHHHHHHHcCCceeEEEecCCC---------Cccc----ceeee------eeccCC--CeeEeecChhhh
Confidence 59999999999999999 44444433 322 0111 12221 111110 112 2222223
Q ss_pred EEEEEecccccccccccchhHhHHHHHHHHhh-c------cC-CCCCCeEEEEccCCCC-----CccHHHhhcc
Q psy11009 164 TLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR-L------LT-FPSTPVQYSIQKGIPW-----DIDEALRRRL 224 (863)
Q Consensus 164 ~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld-~------~~-~~~~~VivIaATN~p~-----~LD~AllRRF 224 (863)
.|+|+||+-.. .-++.+.||+.|. + .. ...+.++||||-|..+ .|..|++.||
T Consensus 64 ~ill~DEiNra--------ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 64 NILLADEINRA--------PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp SEEEEETGGGS---------HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred ceeeecccccC--------CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 59999999754 3456788888882 1 11 1133789999999877 7899999998
No 377
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.51 E-value=0.00016 Score=89.07 Aligned_cols=135 Identities=17% Similarity=0.106 Sum_probs=73.2
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhh--------ccC-CCCceEEEECCCCCChHHHHHHHHHHhC-------CcEEEE
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFK--------GIR-RPWKGVLMVGPPGTGKTMLAKAVATECG-------TTFFNV 773 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~--------~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~-------~~~i~v 773 (863)
.|.|.+.+|+.|.-.+.--.....-.. ... +..-+|||.|.||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 489999999988665532221100000 011 2334899999999999999999998653 233333
Q ss_pred ecccccccccchhHHHHHHHHH--HHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC----C---CC
Q psy11009 774 CSSTLTSKYRGESEKLVRLLFE--MARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS----S---AE 844 (863)
Q Consensus 774 s~s~l~~~~~Ge~e~~ir~lf~--~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~----~---~~ 844 (863)
.+..... +.+..... ..++ .......++++|||+|.+.. ..+..|+..|+.-. . ..
T Consensus 531 gLTa~~~-~~d~~tG~--~~le~GaLvlAdgGtL~IDEidkms~------------~~Q~aLlEaMEqqtIsI~KaGi~~ 595 (915)
T PTZ00111 531 GLTASIK-FNESDNGR--AMIQPGAVVLANGGVCCIDELDKCHN------------ESRLSLYEVMEQQTVTIAKAGIVA 595 (915)
T ss_pred cccchhh-hcccccCc--ccccCCcEEEcCCCeEEecchhhCCH------------HHHHHHHHHHhCCEEEEecCCcce
Confidence 3222110 00000000 0000 00112357999999998843 34566666674211 1 11
Q ss_pred CCCCceEEEEecCCC
Q psy11009 845 DSSKVVMVLAATNFP 859 (863)
Q Consensus 845 ~~~~~VvVIaTTN~P 859 (863)
.-...+.||||+|..
T Consensus 596 tL~ar~rVIAAaNP~ 610 (915)
T PTZ00111 596 TLKAETAILASCNPI 610 (915)
T ss_pred ecCCCeEEEEEcCCc
Confidence 122457899999964
No 378
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.50 E-value=0.0014 Score=71.92 Aligned_cols=101 Identities=22% Similarity=0.263 Sum_probs=61.9
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---------CCcEEEEeccccc
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---------GTTFFNVCSSTLT 779 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---------~~~~i~vs~s~l~ 779 (863)
+..||...+.+.+...- ..+.+|.. ....|+||+|++|.|||++++.++... ..|++.+.+..-.
T Consensus 34 ~rWIgY~~A~~~L~~L~-~Ll~~P~~-----~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p 107 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLE-ELLEYPKR-----HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEP 107 (302)
T ss_pred CCeecCHHHHHHHHHHH-HHHhCCcc-----cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCC
Confidence 44667766666555532 12222211 122489999999999999999998765 2477777653311
Q ss_pred c--------------cc--cchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 780 S--------------KY--RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 780 ~--------------~~--~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
+ .+ .....+....+....+...+-+|+|||++.+..
T Consensus 108 ~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 108 DERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred ChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 1 11 111223333444555667889999999999755
No 379
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.48 E-value=0.00033 Score=72.41 Aligned_cols=43 Identities=30% Similarity=0.401 Sum_probs=31.3
Q ss_pred cchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 712 AELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 712 iGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+|.+.-.+.|.+++. . .+...++|+||.|+|||+|++.+...+
T Consensus 2 ~gR~~el~~l~~~l~----------~--~~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 2 FGREKELEKLKELLE----------S--GPSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -S-HHHHHHHHHCHH----------H----SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH----------h--hcCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 466666666666542 1 234689999999999999999999988
No 380
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.43 E-value=0.00081 Score=81.19 Aligned_cols=169 Identities=11% Similarity=0.003 Sum_probs=101.9
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHH---h----hhh---hHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLA---L----TVG---SSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~---~----~vg---~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.+|+|||++|...++. |+-... + -....|.+. .|-.... . +=| .+...+|.+++....... .
T Consensus 46 Gp~G~GKtt~A~~lAk~l~c~~~~-~-~~~~Cg~C~-sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~-~-- 119 (614)
T PRK14971 46 GPRGVGKTTCARIFAKTINCQNLT-A-DGEACNECE-SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQ-I-- 119 (614)
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCC-C-CCCCCCcch-HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcc-c--
Confidence 99999999999999994 332211 0 011122221 0100000 0 001 123456777654322221 1
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
..--|++|||+|.+- ..-.+.||.-|.... ..+++|.+|+.+..|-++|..|... ++|..++..+-.
T Consensus 120 -~~~KVvIIdea~~Ls--------~~a~naLLK~LEepp---~~tifIL~tt~~~kIl~tI~SRc~i-v~f~~ls~~ei~ 186 (614)
T PRK14971 120 -GKYKIYIIDEVHMLS--------QAAFNAFLKTLEEPP---SYAIFILATTEKHKILPTILSRCQI-FDFNRIQVADIV 186 (614)
T ss_pred -CCcEEEEEECcccCC--------HHHHHHHHHHHhCCC---CCeEEEEEeCCchhchHHHHhhhhe-eecCCCCHHHHH
Confidence 123489999999883 234567777776433 2567777777788899999889855 999999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.+++..+.+..+. ..-.+..||..+.| +..++.+.+...
T Consensus 187 ~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~al~~Lekl 226 (614)
T PRK14971 187 NHLQYVASKEGITAEPEALNVIAQKADG-GMRDALSIFDQV 226 (614)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999888655443 22346778887754 555555555443
No 381
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.43 E-value=0.00022 Score=82.84 Aligned_cols=124 Identities=21% Similarity=0.220 Sum_probs=78.8
Q ss_pred cccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccc
Q psy11009 708 WDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRG 784 (863)
Q Consensus 708 ~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~G 784 (863)
...++|.....+++.+.+.. .......+++.|.+||||+++|+++.... +.+|+.++|..+...+.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~----------~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~- 201 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGR----------LSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLI- 201 (463)
T ss_pred ccceeecCHHHHHHHHHHHH----------HhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH-
Confidence 34588888777777765531 12223579999999999999999998775 57999999987643211
Q ss_pred hhHHHHHHHHH---------------HHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC-----CCCC
Q psy11009 785 ESEKLVRLLFE---------------MARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL-----SSAE 844 (863)
Q Consensus 785 e~e~~ir~lf~---------------~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l-----~~~~ 844 (863)
-..+|. ......+++||||||+.+.. .++..|+..++.- ....
T Consensus 202 -----~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l~~------------~~q~~ll~~l~~~~~~~~~~~~ 264 (463)
T TIGR01818 202 -----ESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDMPL------------DAQTRLLRVLADGEFYRVGGRT 264 (463)
T ss_pred -----HHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhCCH------------HHHHHHHHHHhcCcEEECCCCc
Confidence 111111 01122368999999998854 2466677666532 1111
Q ss_pred CCCCceEEEEecCCC
Q psy11009 845 DSSKVVMVLAATNFP 859 (863)
Q Consensus 845 ~~~~~VvVIaTTN~P 859 (863)
.....+.||+||+..
T Consensus 265 ~~~~~~rii~~~~~~ 279 (463)
T TIGR01818 265 PIKVDVRIVAATHQN 279 (463)
T ss_pred eeeeeeEEEEeCCCC
Confidence 112246788888764
No 382
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.42 E-value=0.00095 Score=75.80 Aligned_cols=105 Identities=21% Similarity=0.307 Sum_probs=58.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh----C-CcEEEEecccccc----------cccc------hhHHHHHHHHHHHHhC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC----G-TTFFNVCSSTLTS----------KYRG------ESEKLVRLLFEMARFY 800 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el----~-~~~i~vs~s~l~~----------~~~G------e~e~~ir~lf~~A~~~ 800 (863)
...++|+||+|+|||+++..+|..+ | ..+..++...+.. .+.| .....+.. ...+..
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~--~l~~l~ 214 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQL--ALAELR 214 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHH--HHHHhc
Confidence 4588999999999999999998764 3 2444444433310 0000 00111111 122334
Q ss_pred CCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 801 APSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 801 ~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
...+||||.+..... ...+.+.+..+..... ....++|+.+|+....+
T Consensus 215 ~~DlVLIDTaG~~~~-----------d~~l~e~La~L~~~~~---~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 215 NKHMVLIDTIGMSQR-----------DRTVSDQIAMLHGADT---PVQRLLLLNATSHGDTL 262 (374)
T ss_pred CCCEEEEcCCCCCcc-----------cHHHHHHHHHHhccCC---CCeEEEEecCccChHHH
Confidence 578999999854321 1123444455544322 23458888888876543
No 383
>KOG1942|consensus
Probab=97.41 E-value=0.00023 Score=76.70 Aligned_cols=72 Identities=31% Similarity=0.445 Sum_probs=55.0
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC--CcEEEEecccccccccchh
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSSTLTSKYRGES 786 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~--~~~i~vs~s~l~~~~~Ge~ 786 (863)
.-++|+..+++.---.+ +..+.-.-..+.+||.||||||||.||-+|+.++| .||..+.++++.+..+..+
T Consensus 38 ~g~vGQ~~AReAagiiv-------dlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKT 110 (456)
T KOG1942|consen 38 AGFVGQENAREAAGIIV-------DLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKT 110 (456)
T ss_pred cccccchhhhhhhhHHH-------HHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHH
Confidence 45899998877655443 23333344568999999999999999999999995 7999899999877655544
Q ss_pred H
Q psy11009 787 E 787 (863)
Q Consensus 787 e 787 (863)
+
T Consensus 111 E 111 (456)
T KOG1942|consen 111 E 111 (456)
T ss_pred H
Confidence 3
No 384
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.41 E-value=0.00097 Score=80.45 Aligned_cols=239 Identities=10% Similarity=0.047 Sum_probs=120.5
Q ss_pred CcCCCcccccccccccc---cchhcccchhhhccCcchh--HHHHHHHh-hhhhHHHHHHHHhhccc----ceeeeccCC
Q psy11009 91 PVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKF--KEAITLAL-TVGSSLNLYRSITNRGF----YIEDYEVSP 160 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~--~e~~~~~~-~vg~se~~~r~i~~~~~----~l~~~~~~~ 160 (863)
|.||||||+++++++++ .++-|.-|.... +..... .++..-.+ .+-+...-++.++.++. ++| ....
T Consensus 117 GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~-~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g--~~~~ 193 (637)
T TIGR00602 117 GPSGCGKSTTIKILSKELGIQVQEWSNPTLPD-FQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLG--DDLM 193 (637)
T ss_pred CCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhc-ccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccc--cccC
Confidence 89999999999999984 223343222111 000000 00000000 01122334445554432 222 1124
Q ss_pred CCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccC-CCC--------------CccHHHhh--c
Q psy11009 161 PGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKG-IPW--------------DIDEALRR--R 223 (863)
Q Consensus 161 ~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN-~p~--------------~LD~AllR--R 223 (863)
.+..||||||||.++. |... .+..+|.++- .... .+-||+++| .|. .|-++++. |
T Consensus 194 ~~~~IILIDEiPn~~~-r~~~----~lq~lLr~~~-~e~~--~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~r 265 (637)
T TIGR00602 194 TDKKIILVEDLPNQFY-RDTR----ALHEILRWKY-VSIG--RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPR 265 (637)
T ss_pred CceeEEEeecchhhch-hhHH----HHHHHHHHHh-hcCC--CceEEEEecCCccccccccccccchhcccCHhHhcccc
Confidence 5678999999999874 3222 2333443221 1111 333333333 121 24478885 5
Q ss_pred cceEEEecCCCHHHHHHHHHHHhccC--CCCCc------ccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhh
Q psy11009 224 LEKRIYIPLPSKAGREALLKINLKEV--KVDPA------VDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQ 295 (863)
Q Consensus 224 FD~~I~i~lPd~~~R~~IL~~~l~~~--~l~~d------vdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~ 295 (863)
.. .|.|++-....-...|+..+... ....+ -.+..|+. .+++||+.++..-.+.+.+..
T Consensus 266 v~-~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~----~s~GDiRsAIn~LQf~~~~~g-------- 332 (637)
T TIGR00602 266 VS-NISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQ----GCSGDIRSAINSLQFSSSKSG-------- 332 (637)
T ss_pred ee-EEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHH----hCCChHHHHHHHHHHHHhcCC--------
Confidence 43 78999999988777777777432 11111 13445554 678899988876655554321
Q ss_pred hccCCccccCCCCCHHHHHHHHHHhcCCC--chhhhhh-cccccceeeeccccceeeeecccC
Q psy11009 296 IRQIPKEELDLPVSQRDFEEALARCNKSV--AREDLEN-ITVERIAPHMSTIGKKLYLKFQKT 355 (863)
Q Consensus 296 ~~~~~~~~~~~~Vt~~Df~~AL~~v~psv--s~~~l~~-~~~~~~~~a~he~ghalv~~~l~~ 355 (863)
.+....-...++..|...+..+..+.. ..+.++. ..++.-....|..|..|+...-..
T Consensus 333 --~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~~~rd~sl~lfhalgkily~Kr~~~ 393 (637)
T TIGR00602 333 --SLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQALGGKDVSLFLFRALGKILYCKRATL 393 (637)
T ss_pred --ccccccccccccHHHhhhccccCCCCCchhHHHHHhhccccchhHHHHHhChhhcccccCc
Confidence 001111123456666665555443321 1122222 133445567788888887776653
No 385
>PRK14974 cell division protein FtsY; Provisional
Probab=97.40 E-value=0.0023 Score=71.86 Aligned_cols=73 Identities=19% Similarity=0.183 Sum_probs=45.3
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccc-------c---c----------chhHHHHHHHHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSK-------Y---R----------GESEKLVRLLFEMAR 798 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~-------~---~----------Ge~e~~ir~lf~~A~ 798 (863)
+.-++|+||||+|||+++..+|..+ +..+..+++..+... + . +.....+....+.++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~ 219 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAK 219 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHH
Confidence 4678999999999999888888776 455555554432110 0 0 011122233344445
Q ss_pred hCCCeEEEEcCCCccc
Q psy11009 799 FYAPSTIFIDEIDSLC 814 (863)
Q Consensus 799 ~~~p~ILfIDEID~l~ 814 (863)
.....+|+||....+.
T Consensus 220 ~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 220 ARGIDVVLIDTAGRMH 235 (336)
T ss_pred hCCCCEEEEECCCccC
Confidence 5556799999996653
No 386
>PHA00729 NTP-binding motif containing protein
Probab=97.38 E-value=0.00031 Score=74.41 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=23.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCC
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGT 768 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~ 768 (863)
.+++|+|+||||||++|.++|..++.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~~ 43 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVFW 43 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 48999999999999999999999863
No 387
>PRK08116 hypothetical protein; Validated
Probab=97.37 E-value=0.00026 Score=77.07 Aligned_cols=70 Identities=9% Similarity=-0.011 Sum_probs=39.1
Q ss_pred EEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCC-CC----ccHHHhhcc---ceEEEecCCCH
Q psy11009 164 TLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIP-WD----IDEALRRRL---EKRIYIPLPSK 235 (863)
Q Consensus 164 ~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p-~~----LD~AllRRF---D~~I~i~lPd~ 235 (863)
.+|+|||+... +. .......|...++..... +.-+|.|||.+ +. +|.++..|+ -..|.+.-||.
T Consensus 180 dlLviDDlg~e---~~---t~~~~~~l~~iin~r~~~--~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 180 DLLILDDLGAE---RD---TEWAREKVYNIIDSRYRK--GLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CEEEEecccCC---CC---CHHHHHHHHHHHHHHHHC--CCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 49999999643 11 233344555555544322 33467789985 23 566676674 33466666664
Q ss_pred HHHHHHHH
Q psy11009 236 AGREALLK 243 (863)
Q Consensus 236 ~~R~~IL~ 243 (863)
|..+.+
T Consensus 252 --R~~~~~ 257 (268)
T PRK08116 252 --RKEIAK 257 (268)
T ss_pred --hHHHHH
Confidence 444443
No 388
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=97.37 E-value=0.0019 Score=80.00 Aligned_cols=136 Identities=10% Similarity=-0.037 Sum_probs=75.9
Q ss_pred eeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHH-HHH-hhc-
Q psy11009 73 AIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLY-RSI-TNR- 149 (863)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~-r~i-~~~- 149 (863)
|-.+=+|+. |-||||||.+|+++.++ .|---.-.|+.+.+ ||...... +.. .+.
T Consensus 490 RgdihVLLv---------GDPGTGKSqLAr~Ih~l------spR~~ytsG~~~s~--------vgLTa~~~~~d~~tG~~ 546 (915)
T PTZ00111 490 RGIINVLLC---------GDPGTAKSQLLHYTHLL------SPRSIYTSGKSSSS--------VGLTASIKFNESDNGRA 546 (915)
T ss_pred cCCceEEEe---------CCCCccHHHHHHHHHHh------CCccccCCCCCCcc--------ccccchhhhcccccCcc
Confidence 444556776 99999999999999986 33111112332111 11111000 100 000
Q ss_pred ccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccC----------CCCCCeEEEEccCCCC-----
Q psy11009 150 GFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT----------FPSTPVQYSIQKGIPW----- 214 (863)
Q Consensus 150 ~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~----------~~~~~VivIaATN~p~----- 214 (863)
...-|....+.. .++||||+|.+- ......|+..|..-. ....++-||||+|-.+
T Consensus 547 ~le~GaLvlAdg--GtL~IDEidkms--------~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~ 616 (915)
T PTZ00111 547 MIQPGAVVLANG--GVCCIDELDKCH--------NESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNK 616 (915)
T ss_pred cccCCcEEEcCC--CeEEecchhhCC--------HHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCc
Confidence 001111222222 399999999874 334455666662111 1134789999999742
Q ss_pred --------CccHHHhhccceEEEe-cCCCHHHHHHH
Q psy11009 215 --------DIDEALRRRLEKRIYI-PLPSKAGREAL 241 (863)
Q Consensus 215 --------~LD~AllRRFD~~I~i-~lPd~~~R~~I 241 (863)
.|.++++-|||..+-+ +.||.+.=..|
T Consensus 617 ~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~l 652 (915)
T PTZ00111 617 NKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLI 652 (915)
T ss_pred ccCcccccCCChHHhhhhcEEEEecCCCChHHHHHH
Confidence 5679999999998665 67776554444
No 389
>KOG0745|consensus
Probab=97.37 E-value=9e-05 Score=83.52 Aligned_cols=139 Identities=17% Similarity=0.173 Sum_probs=91.7
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccccee
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIE 154 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~ 154 (863)
.+-+||. |+-|+||||+|+..||. +..|..--|-= .+.-+.|||+- |+.++.+.---+
T Consensus 226 KSNvLll---------GPtGsGKTllaqTLAr~----ldVPfaIcDcT------tLTQAGYVGeD---VEsvi~KLl~~A 283 (564)
T KOG0745|consen 226 KSNVLLL---------GPTGSGKTLLAQTLARV----LDVPFAICDCT------TLTQAGYVGED---VESVIQKLLQEA 283 (564)
T ss_pred cccEEEE---------CCCCCchhHHHHHHHHH----hCCCeEEeccc------chhhccccccc---HHHHHHHHHHHc
Confidence 4678888 99999999999999998 77887633331 23467899985 455554433334
Q ss_pred eeccCCCCcEEEEEeccccccccccc-----ch-hHhHHHHHHHHhhcc----------CCCCCCeEEEEccCCC-----
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLL-----RG-SKTFRTLCIHKYRLL----------TFPSTPVQYSIQKGIP----- 213 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~-----~~-~~~v~n~lL~~ld~~----------~~~~~~VivIaATN~p----- 213 (863)
+|..++..--||||||+|.|...-.+ +. ..-|...||..+.|- ..+.+..|.|=|||-.
T Consensus 284 ~~nVekAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasG 363 (564)
T KOG0745|consen 284 EYNVEKAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASG 363 (564)
T ss_pred cCCHHHHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecc
Confidence 57667777779999999999855433 11 134566677766432 1122245566666654
Q ss_pred --CCccHHHhhcc-ceEEEecCCCH
Q psy11009 214 --WDIDEALRRRL-EKRIYIPLPSK 235 (863)
Q Consensus 214 --~~LD~AllRRF-D~~I~i~lPd~ 235 (863)
-.||.-+.||. |+.+-|+.|.-
T Consensus 364 AF~~Ldk~I~rR~~d~slGFg~~s~ 388 (564)
T KOG0745|consen 364 AFVGLDKIISRRLDDKSLGFGAPSS 388 (564)
T ss_pred cccchHHHHHHhhcchhcccCCCCC
Confidence 36888888855 45566666643
No 390
>KOG1514|consensus
Probab=97.36 E-value=0.011 Score=70.60 Aligned_cols=129 Identities=19% Similarity=0.230 Sum_probs=80.3
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----------CCcEEEEecccc
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC----------GTTFFNVCSSTL 778 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el----------~~~~i~vs~s~l 778 (863)
+-|.+.+.-..+|..++...+. . .....++.++|-||||||.+++.+-.++ .+.++++++-.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~------~-~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l 468 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFIS------D-QGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRL 468 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcC------C-CCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceee
Confidence 3477777778888877743221 1 1122488999999999999999998865 468899998776
Q ss_pred ccc----------ccchhH------HHHHHHHHHH-HhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC
Q psy11009 779 TSK----------YRGESE------KLVRLLFEMA-RFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS 841 (863)
Q Consensus 779 ~~~----------~~Ge~e------~~ir~lf~~A-~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~ 841 (863)
.+. +.|+.. ..+..-|... ....++||+|||+|.|+.++ +.|+--|+.+-
T Consensus 469 ~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~---------QdVlYn~fdWp---- 535 (767)
T KOG1514|consen 469 ASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS---------QDVLYNIFDWP---- 535 (767)
T ss_pred cCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc---------HHHHHHHhcCC----
Confidence 542 122221 1122222211 13457899999999998853 23444444433
Q ss_pred CCCCCCCceEEEEecCCC
Q psy11009 842 SAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 842 ~~~~~~~~VvVIaTTN~P 859 (863)
.-+..+++||+-.|.-
T Consensus 536 --t~~~sKLvvi~IaNTm 551 (767)
T KOG1514|consen 536 --TLKNSKLVVIAIANTM 551 (767)
T ss_pred --cCCCCceEEEEecccc
Confidence 1234557777777753
No 391
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0013 Score=74.77 Aligned_cols=109 Identities=9% Similarity=0.079 Sum_probs=75.0
Q ss_pred HHHHHHhhcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHH
Q psy11009 141 NLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEAL 220 (863)
Q Consensus 141 ~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~Al 220 (863)
..+|.+..... +.....+|-||+|||+|.+- ....|.||..+.. +..++++|.+|+.++.+.+.+
T Consensus 124 dqiR~l~~~~~----~~~~~~~~kVviIDead~m~--------~~aanaLLK~LEe---pp~~~~~IL~t~~~~~llpti 188 (365)
T PRK07471 124 DEVRELISFFG----LTAAEGGWRVVIVDTADEMN--------ANAANALLKVLEE---PPARSLFLLVSHAPARLLPTI 188 (365)
T ss_pred HHHHHHHHHhC----cCcccCCCEEEEEechHhcC--------HHHHHHHHHHHhc---CCCCeEEEEEECCchhchHHh
Confidence 44666665322 22355788999999999773 3456778877754 323678888999999999998
Q ss_pred hhccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCC
Q psy11009 221 RRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYS 268 (863)
Q Consensus 221 lRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~S 268 (863)
..|. ..|.|++|+.++-.++|....... .+..+..++..+.|--
T Consensus 189 ~SRc-~~i~l~~l~~~~i~~~L~~~~~~~---~~~~~~~l~~~s~Gsp 232 (365)
T PRK07471 189 RSRC-RKLRLRPLAPEDVIDALAAAGPDL---PDDPRAALAALAEGSV 232 (365)
T ss_pred hccc-eEEECCCCCHHHHHHHHHHhcccC---CHHHHHHHHHHcCCCH
Confidence 7787 478999999999999998765221 1122345666666533
No 392
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.35 E-value=0.0011 Score=69.65 Aligned_cols=75 Identities=25% Similarity=0.370 Sum_probs=47.7
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc----cc-------------------hhHHHHHHH
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY----RG-------------------ESEKLVRLL 793 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~----~G-------------------e~e~~ir~l 793 (863)
.+..-++++||||+|||++|..+|.++ +..+++++...+.... .+ +....++.+
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 100 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIRKA 100 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHHHH
Confidence 334567899999999999999998755 6778888776221110 00 001112222
Q ss_pred HHHHHhCCCeEEEEcCCCcccc
Q psy11009 794 FEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 794 f~~A~~~~p~ILfIDEID~l~~ 815 (863)
..... ..+.+|+||-+.++..
T Consensus 101 ~~~~~-~~~~lvVIDsi~al~~ 121 (225)
T PRK09361 101 EKLAK-ENVGLIVLDSATSLYR 121 (225)
T ss_pred HHHHH-hcccEEEEeCcHHHhH
Confidence 22222 5789999999998864
No 393
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.34 E-value=0.00019 Score=67.51 Aligned_cols=31 Identities=35% Similarity=0.710 Sum_probs=28.6
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEEec
Q psy11009 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el~~~~i~vs~ 775 (863)
++|.||||+|||++|+.+|..+|.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999999887765
No 394
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=97.34 E-value=0.0011 Score=77.76 Aligned_cols=168 Identities=18% Similarity=0.112 Sum_probs=118.0
Q ss_pred CcCCCccccccccccc-ccchhcccchhhhccCcchh------------HHHHHHHhhhhhHHHHHHHHhhcccceeeec
Q psy11009 91 PVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKF------------KEAITLALTVGSSLNLYRSITNRGFYIEDYE 157 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~------------~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~ 157 (863)
|.-|||||.+||..|| +||..+.- ..--|++.. .|-++.|- -....+|.|.++..|.-
T Consensus 45 G~RGvGKTt~Ari~AkalNC~~~~~---~ePC~~C~~Ck~I~~g~~~DviEiDaASn---~gVddiR~i~e~v~y~P--- 115 (515)
T COG2812 45 GPRGVGKTTIARILAKALNCENGPT---AEPCGKCISCKEINEGSLIDVIEIDAASN---TGVDDIREIIEKVNYAP--- 115 (515)
T ss_pred CCCCcCchhHHHHHHHHhcCCCCCC---CCcchhhhhhHhhhcCCcccchhhhhhhc---cChHHHHHHHHHhccCC---
Confidence 8999999999999999 88886511 111222211 22222222 25667888888765554
Q ss_pred cCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHH
Q psy11009 158 VSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAG 237 (863)
Q Consensus 158 ~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~ 237 (863)
...+.-|.+|||+.-|- ....|.||..|. .+-.+|++|.||--|+.|.+=++.|-+ ++.|.+=+.++
T Consensus 116 -~~~ryKVyiIDEvHMLS--------~~afNALLKTLE---EPP~hV~FIlATTe~~Kip~TIlSRcq-~f~fkri~~~~ 182 (515)
T COG2812 116 -SEGRYKVYIIDEVHMLS--------KQAFNALLKTLE---EPPSHVKFILATTEPQKIPNTILSRCQ-RFDFKRLDLEE 182 (515)
T ss_pred -ccccceEEEEecHHhhh--------HHHHHHHhcccc---cCccCeEEEEecCCcCcCchhhhhccc-cccccCCCHHH
Confidence 78888999999998773 445677776654 444489999999999999998887553 24556667778
Q ss_pred HHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHH
Q psy11009 238 REALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASM 281 (863)
Q Consensus 238 R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal 281 (863)
....|...+.+-.+. .+-.+..||+..+| |..|...++..|..
T Consensus 183 I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDalslLDq~i~ 226 (515)
T COG2812 183 IAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALSLLDQAIA 226 (515)
T ss_pred HHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHHHHHHHHH
Confidence 888888888655544 33447888998887 77888888877733
No 395
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.33 E-value=0.0017 Score=71.45 Aligned_cols=102 Identities=12% Similarity=0.077 Sum_probs=63.8
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCc----------------EEEEecccccccccchhHHHHHHHHHHHH----h
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTT----------------FFNVCSSTLTSKYRGESEKLVRLLFEMAR----F 799 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~~----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~ 799 (863)
+-+-..||+||+|+||+.+|.++|..+-+. ++.+.+.. .+..+ .-..+|.+.+... .
T Consensus 17 rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~-~~~~I--~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 17 KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQG-KGRLH--SIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCC-CCCcC--cHHHHHHHHHHHhhCccC
Confidence 344589999999999999999999887431 11121110 00001 1223444444433 2
Q ss_pred CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 800 YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 800 ~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
....|++||++|.+.. ...+.||+.|+ ++...+++|..|+.|+.|
T Consensus 94 ~~~kv~ii~~ad~mt~------------~AaNaLLK~LE------EPp~~~~fiL~~~~~~~l 138 (290)
T PRK05917 94 SPYKIYIIHEADRMTL------------DAISAFLKVLE------DPPQHGVIILTSAKPQRL 138 (290)
T ss_pred CCceEEEEechhhcCH------------HHHHHHHHHhh------cCCCCeEEEEEeCChhhC
Confidence 3346999999999854 36788999884 445567777777776654
No 396
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.32 E-value=0.00062 Score=76.25 Aligned_cols=154 Identities=12% Similarity=0.093 Sum_probs=96.6
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHH------hhh-------hhHHHHHHHHhhcccceeee
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLA------LTV-------GSSLNLYRSITNRGFYIEDY 156 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~------~~v-------g~se~~~r~i~~~~~~l~~~ 156 (863)
|.+|+||+++|...|+. ++-. |.=-.--|++ -.|-...+ .+| .-....+|.+.+...+-.
T Consensus 29 G~~G~GK~~~A~~~A~~llC~~---~~~~~~Cg~C-~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~-- 102 (328)
T PRK05707 29 GPAGIGKRALAERLAAALLCEA---PQGGGACGSC-KGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA-- 102 (328)
T ss_pred CCCCCCHHHHHHHHHHHHcCCC---CCCCCCCCCC-HHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc--
Confidence 99999999999999994 2211 1100001111 00100000 000 123567788776532221
Q ss_pred ccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHH
Q psy11009 157 EVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKA 236 (863)
Q Consensus 157 ~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~ 236 (863)
...+.-|++|||+|.+- ..-.|.||.-|.. +..++++|.+|+.++.|-|.++.|... |.|++|+.+
T Consensus 103 --~~~~~kv~iI~~a~~m~--------~~aaNaLLK~LEE---Pp~~~~fiL~t~~~~~ll~TI~SRc~~-~~~~~~~~~ 168 (328)
T PRK05707 103 --QLGGRKVVLIEPAEAMN--------RNAANALLKSLEE---PSGDTVLLLISHQPSRLLPTIKSRCQQ-QACPLPSNE 168 (328)
T ss_pred --ccCCCeEEEECChhhCC--------HHHHHHHHHHHhC---CCCCeEEEEEECChhhCcHHHHhhcee-eeCCCcCHH
Confidence 23445688899999874 3556888877754 434789999999999999999999987 899999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHhhhCCCC
Q psy11009 237 GREALLKINLKEVKVDPAVDLTHIASQLDGY 267 (863)
Q Consensus 237 ~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~ 267 (863)
+-.++|...... ..+.+...++..+.|-
T Consensus 169 ~~~~~L~~~~~~---~~~~~~~~~l~la~Gs 196 (328)
T PRK05707 169 ESLQWLQQALPE---SDERERIELLTLAGGS 196 (328)
T ss_pred HHHHHHHHhccc---CChHHHHHHHHHcCCC
Confidence 988888765421 1233345566666653
No 397
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=97.31 E-value=0.00076 Score=76.52 Aligned_cols=48 Identities=29% Similarity=0.315 Sum_probs=39.0
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.|.-++|++..+..|.-..+ .....|+|+.|+.|||||+++|+||.-|
T Consensus 15 pf~aivGqd~lk~aL~l~av------------~P~iggvLI~G~kGtaKSt~~Rala~LL 62 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAV------------DPQIGGALIAGEKGTAKSTLARALADLL 62 (423)
T ss_pred chhhhcCchHHHHHHhhhhc------------ccccceeEEecCCCccHHHHHHHHHHhC
Confidence 46779999999887765332 2334699999999999999999999887
No 398
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.30 E-value=0.00038 Score=82.07 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=48.4
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-CCcEEEEec
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-GTTFFNVCS 775 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-~~~~i~vs~ 775 (863)
-|+|+.|+++++++|.+++. ....+.....+-++|.||||+|||+||++||+.+ ..+++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~------~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFR------HAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHH------HHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 36789999999999988772 2223334444688999999999999999999987 356666654
No 399
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.30 E-value=0.0015 Score=72.80 Aligned_cols=101 Identities=21% Similarity=0.244 Sum_probs=59.6
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccc----------------cccchhHHHHHHHHHHHHhC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTS----------------KYRGESEKLVRLLFEMARFY 800 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~----------------~~~Ge~e~~ir~lf~~A~~~ 800 (863)
.+.+-++++||||||||+||..++.++ +.+++++++..... ..+...+..+..+....+..
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~~~ 132 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVRSG 132 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcc
Confidence 334467899999999999988776554 66777776543211 01112233344444445567
Q ss_pred CCeEEEEcCCCcccccCC---C--CchhhHHHHHHHHHHHHHhcC
Q psy11009 801 APSTIFIDEIDSLCSRRG---S--ESEHEASRRVKSELLVQMDGL 840 (863)
Q Consensus 801 ~p~ILfIDEID~l~~~R~---~--~~~~e~~~rv~~~LL~~lD~l 840 (863)
.+.+|+||-+.++.++.. . ........|.++++|..|..+
T Consensus 133 ~~~lIVIDSv~al~~~~E~e~~~g~~~~~~~aR~m~~~lr~L~~~ 177 (321)
T TIGR02012 133 AVDIIVVDSVAALVPKAEIEGEMGDSHVGLQARLMSQALRKLTGA 177 (321)
T ss_pred CCcEEEEcchhhhccchhhcccccccchhHHHHHHHHHHHHHHHH
Confidence 899999999999876421 1 011123335555656555444
No 400
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.30 E-value=0.0011 Score=76.47 Aligned_cols=122 Identities=22% Similarity=0.259 Sum_probs=75.7
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchh
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGES 786 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~ 786 (863)
.++|.......+...+. ........++++|.+||||+++|+++.... +.+|+.++|..+......
T Consensus 140 ~lig~s~~~~~~~~~i~----------~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~-- 207 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIA----------LVAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLE-- 207 (441)
T ss_pred ceEecCHHHHHHHHHHh----------hccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHH--
Confidence 46666666666555442 112233579999999999999999997665 579999999876432211
Q ss_pred HHHHHHHHHH---------------HHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC-----CCCCC
Q psy11009 787 EKLVRLLFEM---------------ARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS-----SAEDS 846 (863)
Q Consensus 787 e~~ir~lf~~---------------A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~-----~~~~~ 846 (863)
..+|.. .....+++||||||+.+.. ..+..|+..++.-. .....
T Consensus 208 ----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~------------~~q~~l~~~l~~~~~~~~~~~~~~ 271 (441)
T PRK10365 208 ----SELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP------------MMQVRLLRAIQEREVQRVGSNQTI 271 (441)
T ss_pred ----HHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH------------HHHHHHHHHHccCcEEeCCCCcee
Confidence 112210 1123478999999999854 24566676665321 11111
Q ss_pred CCceEEEEecCCC
Q psy11009 847 SKVVMVLAATNFP 859 (863)
Q Consensus 847 ~~~VvVIaTTN~P 859 (863)
...+.+|+||+.+
T Consensus 272 ~~~~rii~~t~~~ 284 (441)
T PRK10365 272 SVDVRLIAATHRD 284 (441)
T ss_pred eeceEEEEeCCCC
Confidence 2246788888765
No 401
>KOG2035|consensus
Probab=97.29 E-value=0.0015 Score=70.51 Aligned_cols=57 Identities=21% Similarity=0.261 Sum_probs=48.3
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.|+++|++.+++.+.+.++....+..... .....++|+|||+|+||-+.+.++-+++
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~------------~~d~PHll~yGPSGaGKKTrimclL~el 58 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSS------------TGDFPHLLVYGPSGAGKKTRIMCLLREL 58 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcc------------cCCCCeEEEECCCCCCchhhHHHHHHHH
Confidence 48999999999999999999998887552 1112499999999999999999998887
No 402
>PRK08118 topology modulation protein; Reviewed
Probab=97.25 E-value=0.00066 Score=68.65 Aligned_cols=34 Identities=21% Similarity=0.468 Sum_probs=30.4
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
+.|+++||||+|||++|+.|+..++.+++.++.-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l 35 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL 35 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 3689999999999999999999999998887743
No 403
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.24 E-value=0.0034 Score=71.86 Aligned_cols=197 Identities=17% Similarity=0.101 Sum_probs=113.3
Q ss_pred cceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHH-HHhhhhhHHHHHHHHhhccccee
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAIT-LALTVGSSLNLYRSITNRGFYIE 154 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~-~~~~vg~se~~~r~i~~~~~~l~ 154 (863)
..+.+||+ |.+|+|||+|..++..- +--..|..+ .-+..+.. ..-+|-..-.+--.-|.+.
T Consensus 112 ~~nplfi~-------G~~GlGKTHLl~Aign~--~~~~~~~a~-----v~y~~se~f~~~~v~a~~~~~~~~Fk~~---- 173 (408)
T COG0593 112 AYNPLFIY-------GGVGLGKTHLLQAIGNE--ALANGPNAR-----VVYLTSEDFTNDFVKALRDNEMEKFKEK---- 173 (408)
T ss_pred cCCcEEEE-------CCCCCCHHHHHHHHHHH--HHhhCCCce-----EEeccHHHHHHHHHHHHHhhhHHHHHHh----
Confidence 35566666 56899999999999872 112244331 11111111 1112222222222223221
Q ss_pred eeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCc---cHHHhhccceE--EE
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDI---DEALRRRLEKR--IY 229 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~L---D~AllRRFD~~--I~ 229 (863)
| .. .+++||+++.+..+... -..+.+.|... ...+ +-||+.+-..|..| ++-|..||+.- +.
T Consensus 174 -y--~~---dlllIDDiq~l~gk~~~--qeefFh~FN~l----~~~~-kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~ 240 (408)
T COG0593 174 -Y--SL---DLLLIDDIQFLAGKERT--QEEFFHTFNAL----LENG-KQIVLTSDRPPKELNGLEDRLRSRLEWGLVVE 240 (408)
T ss_pred -h--cc---CeeeechHhHhcCChhH--HHHHHHHHHHH----HhcC-CEEEEEcCCCchhhccccHHHHHHHhceeEEe
Confidence 1 22 38999999999876422 22333333332 2222 34666666667654 57777798865 56
Q ss_pred ecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCC
Q psy11009 230 IPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPV 308 (863)
Q Consensus 230 i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~V 308 (863)
|..||.+.|..||+.......+. ++.-+..||...+ =+..+++.++......+.-.. ..|
T Consensus 241 I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~-~nvReLegaL~~l~~~a~~~~------------------~~i 301 (408)
T COG0593 241 IEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLD-RNVRELEGALNRLDAFALFTK------------------RAI 301 (408)
T ss_pred eCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh-ccHHHHHHHHHHHHHHHHhcC------------------ccC
Confidence 67999999999999977544443 3334677888775 577888877766655544432 256
Q ss_pred CHHHHHHHHHHhcC
Q psy11009 309 SQRDFEEALARCNK 322 (863)
Q Consensus 309 t~~Df~~AL~~v~p 322 (863)
|.+-..++|.....
T Consensus 302 Ti~~v~e~L~~~~~ 315 (408)
T COG0593 302 TIDLVKEILKDLLR 315 (408)
T ss_pred cHHHHHHHHHHhhc
Confidence 66666666665544
No 404
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.24 E-value=0.0028 Score=73.85 Aligned_cols=99 Identities=24% Similarity=0.316 Sum_probs=62.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccccc------ch--------hHHHHHHHHHHHHhCCC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYR------GE--------SEKLVRLLFEMARFYAP 802 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~------Ge--------~e~~ir~lf~~A~~~~p 802 (863)
.+..-++|+|+||+|||+++..+|... +..+++++..+-..... |. .+..+..+++..+...|
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~~~ 157 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEEKP 157 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhhCC
Confidence 344578899999999999999998765 67888888754322111 10 01123455555666789
Q ss_pred eEEEEcCCCcccccCCC--CchhhHHHHHHHHHHHHHh
Q psy11009 803 STIFIDEIDSLCSRRGS--ESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 803 ~ILfIDEID~l~~~R~~--~~~~e~~~rv~~~LL~~lD 838 (863)
.+|+||+|..+....-. .+.....+.+...|.....
T Consensus 158 ~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak 195 (446)
T PRK11823 158 DLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAK 195 (446)
T ss_pred CEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999988653211 1122233455555655543
No 405
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.24 E-value=0.0023 Score=72.82 Aligned_cols=98 Identities=22% Similarity=0.294 Sum_probs=60.4
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc------cch--------hHHHHHHHHHHHHhCCC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY------RGE--------SEKLVRLLFEMARFYAP 802 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~------~Ge--------~e~~ir~lf~~A~~~~p 802 (863)
.+..-++|+|+||+|||+++..+|..+ +.++++++..+-.... .|. .+..+..+++......|
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~~~ 159 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEELKP 159 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhcCC
Confidence 444578899999999999999998765 4578888765422111 010 11223455566666789
Q ss_pred eEEEEcCCCcccccCCC--CchhhHHHHHHHHHHHHH
Q psy11009 803 STIFIDEIDSLCSRRGS--ESEHEASRRVKSELLVQM 837 (863)
Q Consensus 803 ~ILfIDEID~l~~~R~~--~~~~e~~~rv~~~LL~~l 837 (863)
.+|+||+|..+....-. .+.....+.+...|....
T Consensus 160 ~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~la 196 (372)
T cd01121 160 DLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFA 196 (372)
T ss_pred cEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999988643211 111233344555555544
No 406
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.20 E-value=0.00038 Score=69.31 Aligned_cols=34 Identities=21% Similarity=0.432 Sum_probs=30.3
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
++..++|+||||||||++|+.+|+.++.+++..+
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 4468999999999999999999999999888654
No 407
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.20 E-value=0.0045 Score=71.88 Aligned_cols=37 Identities=30% Similarity=0.334 Sum_probs=29.8
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSST 777 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~ 777 (863)
++..++|+|++|+|||+++..+|..+ |..+..+++..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 45789999999999999999998877 55666666544
No 408
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.18 E-value=0.0025 Score=67.76 Aligned_cols=75 Identities=29% Similarity=0.480 Sum_probs=46.7
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc-----------------------------cc--h
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY-----------------------------RG--E 785 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~-----------------------------~G--e 785 (863)
.+..-+++.||||||||+++..++... +...++++..+-...+ .+ +
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSGNSE 101 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHhCCchHHHhhcCcEEEEEecccccChHH
Confidence 344578999999999999975554433 5677776643211000 00 1
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcCCCccc
Q psy11009 786 SEKLVRLLFEMARFYAPSTIFIDEIDSLC 814 (863)
Q Consensus 786 ~e~~ir~lf~~A~~~~p~ILfIDEID~l~ 814 (863)
.+..+..+........|.+++|||+-.+.
T Consensus 102 ~~~~l~~il~~~~~~~~~~lVIDe~t~~l 130 (230)
T PRK08533 102 KRKFLKKLMNTRRFYEKDVIIIDSLSSLI 130 (230)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECccHHh
Confidence 12334445555555678999999998875
No 409
>PF05729 NACHT: NACHT domain
Probab=97.17 E-value=0.0033 Score=61.55 Aligned_cols=73 Identities=21% Similarity=0.267 Sum_probs=42.7
Q ss_pred eEEEECCCCCChHHHHHHHHHHhC--------Cc-EEEEecccccccc------------cchhHHHHHH-HHHHHHhCC
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECG--------TT-FFNVCSSTLTSKY------------RGESEKLVRL-LFEMARFYA 801 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~--------~~-~i~vs~s~l~~~~------------~Ge~e~~ir~-lf~~A~~~~ 801 (863)
-++|+|+||+|||++++.++..+. .+ ++.+...+....- .......... .........
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 478999999999999999987761 11 2233333322110 0001111111 222334456
Q ss_pred CeEEEEcCCCccccc
Q psy11009 802 PSTIFIDEIDSLCSR 816 (863)
Q Consensus 802 p~ILfIDEID~l~~~ 816 (863)
..+|+||-+|.+...
T Consensus 82 ~~llilDglDE~~~~ 96 (166)
T PF05729_consen 82 RVLLILDGLDELEEQ 96 (166)
T ss_pred ceEEEEechHhcccc
Confidence 789999999999764
No 410
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.17 E-value=0.0018 Score=62.56 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=38.8
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhhccCCCCce--EEEECCCCCChHHHHHHHHHHh
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKG--VLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kg--vLL~GPPGtGKT~LAraIA~el 766 (863)
.|.|+.-+.+.|..++...+.. ..|.+. +.|+||||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~-------~~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLAN-------PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcC-------CCCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 4899999999999988533221 234444 4489999999999999999996
No 411
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.14 E-value=0.00093 Score=75.13 Aligned_cols=90 Identities=10% Similarity=0.092 Sum_probs=67.2
Q ss_pred HHHHHHHhhcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHH
Q psy11009 140 LNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEA 219 (863)
Q Consensus 140 e~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~A 219 (863)
...+|.+.... . +.....+--|++||++|.+- ..--|.||.-|. .+..++++|.+|++|+.|.|.
T Consensus 114 idqiR~l~~~~---~-~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLE---EPp~~t~fiL~t~~~~~LLpT 178 (342)
T PRK06964 114 IEQVRALLDFC---G-VGTHRGGARVVVLYPAEALN--------VAAANALLKTLE---EPPPGTVFLLVSARIDRLLPT 178 (342)
T ss_pred HHHHHHHHHHh---c-cCCccCCceEEEEechhhcC--------HHHHHHHHHHhc---CCCcCcEEEEEECChhhCcHH
Confidence 45666666532 1 11223445599999999873 345678887775 454589999999999999999
Q ss_pred HhhccceEEEecCCCHHHHHHHHHHH
Q psy11009 220 LRRRLEKRIYIPLPSKAGREALLKIN 245 (863)
Q Consensus 220 llRRFD~~I~i~lPd~~~R~~IL~~~ 245 (863)
++.|. ..|.|++|+.++..++|...
T Consensus 179 I~SRc-q~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 179 ILSRC-RQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred HHhcC-EEEEecCCCHHHHHHHHHHc
Confidence 99999 68999999999999888764
No 412
>PRK07261 topology modulation protein; Provisional
Probab=97.14 E-value=0.001 Score=67.40 Aligned_cols=35 Identities=17% Similarity=0.416 Sum_probs=30.3
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
.++++|+||+|||++|+.++..++.+++.++.-..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~ 36 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHF 36 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEe
Confidence 48999999999999999999999999888765433
No 413
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.12 E-value=0.0029 Score=65.88 Aligned_cols=68 Identities=24% Similarity=0.405 Sum_probs=41.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh-----CCcEE-------------EEeccc-cc---ccccchhHHHHHHHHHHHHhC
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC-----GTTFF-------------NVCSST-LT---SKYRGESEKLVRLLFEMARFY 800 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el-----~~~~i-------------~vs~s~-l~---~~~~Ge~e~~ir~lf~~A~~~ 800 (863)
+-++|.||.|+|||++.++++... |.++- .++..+ +. +.+..+ ...+..+++.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q~~~l~~~~~~~d~l~~~~s~~~~e-~~~~~~iL~~~~~~ 104 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELPPVKIFTSIRVSDDLRDGISYFYAE-LRRLKEIVEKAKKG 104 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcccceEEEeccchhccccccChHHHH-HHHHHHHHHhccCC
Confidence 578999999999999999998543 44321 111111 10 011111 23455666655545
Q ss_pred CCeEEEEcCCC
Q psy11009 801 APSTIFIDEID 811 (863)
Q Consensus 801 ~p~ILfIDEID 811 (863)
.|.+|++||.-
T Consensus 105 ~p~llllDEp~ 115 (199)
T cd03283 105 EPVLFLLDEIF 115 (199)
T ss_pred CCeEEEEeccc
Confidence 89999999984
No 414
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.12 E-value=0.0029 Score=70.68 Aligned_cols=75 Identities=21% Similarity=0.253 Sum_probs=49.4
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccc----------------ccchhHHHHHHHHHHHHhCCC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSK----------------YRGESEKLVRLLFEMARFYAP 802 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~----------------~~Ge~e~~ir~lf~~A~~~~p 802 (863)
.+-++++||||||||+||..++.+. +...++++...-... .+...+..+..+....+...+
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~s~~~ 134 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVRSGAV 134 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHhccCC
Confidence 3457799999999999999876544 677777776331110 011123333334444456678
Q ss_pred eEEEEcCCCccccc
Q psy11009 803 STIFIDEIDSLCSR 816 (863)
Q Consensus 803 ~ILfIDEID~l~~~ 816 (863)
++|+||-+-++.++
T Consensus 135 ~lIVIDSvaal~~~ 148 (325)
T cd00983 135 DLIVVDSVAALVPK 148 (325)
T ss_pred CEEEEcchHhhccc
Confidence 99999999999864
No 415
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.11 E-value=0.0027 Score=68.08 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=22.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
..++|+||+|+|||++++.++..+.
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 3588999999999999999999875
No 416
>KOG2170|consensus
Probab=97.10 E-value=0.0031 Score=68.76 Aligned_cols=131 Identities=18% Similarity=0.116 Sum_probs=73.9
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEeccc--cc-ccc
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVCSST--LT-SKY 782 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs~s~--l~-~~~ 782 (863)
|.|+.-+++.|-..+..... ....+.|--+-|+|+|||||.++++.||+.+ ..+++..=.++ +- .++
T Consensus 84 lfGQHla~~~Vv~alk~~~~-----n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ 158 (344)
T KOG2170|consen 84 LFGQHLAKQLVVNALKSHWA-----NPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASK 158 (344)
T ss_pred hhchHHHHHHHHHHHHHHhc-----CCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHH
Confidence 78999888888887742211 1112222345579999999999999999987 22322211111 10 111
Q ss_pred cc-hhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCC-CCCCceEEEEecCC
Q psy11009 783 RG-ESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAE-DSSKVVMVLAATNF 858 (863)
Q Consensus 783 ~G-e~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~-~~~~~VvVIaTTN~ 858 (863)
+. -.++..+.+-..++...-+++++||+|.+.+ .++.+|--.+|...... -...+.++|.-+|.
T Consensus 159 ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~------------gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~ 224 (344)
T KOG2170|consen 159 IEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP------------GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNA 224 (344)
T ss_pred HHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH------------hHHHHHhhhhccccccccccccceEEEEEcCC
Confidence 11 1233344555566667788999999999854 24555555555322111 12334556665553
No 417
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.0053 Score=69.99 Aligned_cols=160 Identities=14% Similarity=0.176 Sum_probs=85.5
Q ss_pred hccccCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHH
Q psy11009 680 RRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLA 759 (863)
Q Consensus 680 ~k~~~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LA 759 (863)
..+...+++...++.+-..+....... .......+++.+.+.+...+..+..+ ...++.++|.||+|+|||+++
T Consensus 185 ~~L~~~dV~~~~~~~ll~~~~~~~~~~---~~~~~~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 185 RMLEQNDVEQYFIHAYAEKLKVKFENA---TMITEEEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTL 258 (436)
T ss_pred HHHHHCCCCHHHHHHHHHHHHhhhccc---ccCCHHHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHH
Confidence 344556778887777655444332221 12233556666666554333322211 223468999999999999999
Q ss_pred HHHHHHh---CCcEEEEeccccc----c---cc---------cchhHHHHHHHHHHHHh-CCCeEEEEcCCCcccccCCC
Q psy11009 760 KAVATEC---GTTFFNVCSSTLT----S---KY---------RGESEKLVRLLFEMARF-YAPSTIFIDEIDSLCSRRGS 819 (863)
Q Consensus 760 raIA~el---~~~~i~vs~s~l~----~---~~---------~Ge~e~~ir~lf~~A~~-~~p~ILfIDEID~l~~~R~~ 819 (863)
..||..+ +..+..+++.... . .| ....+..+......+.. ...++||||-......
T Consensus 259 aKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~k---- 334 (436)
T PRK11889 259 AKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYR---- 334 (436)
T ss_pred HHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeCccccCc----
Confidence 9999876 4445555543321 0 11 11223334444444432 2468999998755421
Q ss_pred CchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 820 ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 820 ~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
....+.++...++... +...++|+.+|...
T Consensus 335 ------d~~lm~EL~~~lk~~~----PdevlLVLsATtk~ 364 (436)
T PRK11889 335 ------ASETVEEMIETMGQVE----PDYICLTLSASMKS 364 (436)
T ss_pred ------CHHHHHHHHHHHhhcC----CCeEEEEECCccCh
Confidence 1223455555554332 22345666655443
No 418
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.04 E-value=0.0042 Score=64.91 Aligned_cols=37 Identities=32% Similarity=0.426 Sum_probs=29.1
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSS 776 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s 776 (863)
.+..-++++|+||||||+++..+|.++ +.++++++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 334458899999999999999998775 5677777654
No 419
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0088 Score=68.48 Aligned_cols=159 Identities=10% Similarity=0.051 Sum_probs=81.1
Q ss_pred ccCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHH
Q psy11009 683 ESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAV 762 (863)
Q Consensus 683 ~~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraI 762 (863)
-..+++...++.+-..+.+.. ..+++...+.+++.+.+.+...+..+.... ....++.++|+||+|+|||+++.-+
T Consensus 119 ~~~dv~~~~~~~i~~~~~~~~---~~~~~~~~~~v~~~l~~~l~~~i~~~~~~~-~~~~~~vi~lvGptGvGKTTT~aKL 194 (388)
T PRK12723 119 RENDFSESYIKDINEFIKKEF---SLSDLDDYDKVRDSVIIYIAKTIKCSGSII-DNLKKRVFILVGPTGVGKTTTIAKL 194 (388)
T ss_pred HHCCCCHHHHHHHHHHHHHHh---hhhhcCCHHHHHHHHHHHHHHHhhccCccc-cCCCCeEEEEECCCCCCHHHHHHHH
Confidence 345667776666554443332 223333445555555544422111111010 1123468999999999999999989
Q ss_pred HHHh-------CCcEEEEeccccccc----------------ccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC
Q psy11009 763 ATEC-------GTTFFNVCSSTLTSK----------------YRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGS 819 (863)
Q Consensus 763 A~el-------~~~~i~vs~s~l~~~----------------~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~ 819 (863)
|..+ +..+..++....... ........+...+. +.....+|+||++.....
T Consensus 195 A~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~--~~~~~DlVLIDTaGr~~~---- 268 (388)
T PRK12723 195 AAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT--QSKDFDLVLVDTIGKSPK---- 268 (388)
T ss_pred HHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH--HhCCCCEEEEcCCCCCcc----
Confidence 8765 234444444332110 01111222222222 234578999999976632
Q ss_pred CchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCC
Q psy11009 820 ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 820 ~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~ 860 (863)
+. .-+.++...++.... +...++|+.+|..+.
T Consensus 269 ---~~---~~l~el~~~l~~~~~---~~e~~LVlsat~~~~ 300 (388)
T PRK12723 269 ---DF---MKLAEMKELLNACGR---DAEFHLAVSSTTKTS 300 (388)
T ss_pred ---CH---HHHHHHHHHHHhcCC---CCeEEEEEcCCCCHH
Confidence 11 124455555554432 224578888887654
No 420
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.03 E-value=0.0014 Score=63.23 Aligned_cols=33 Identities=33% Similarity=0.759 Sum_probs=26.7
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc
Q psy11009 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~ 779 (863)
++|.||||||||++|+.++..++..+ ++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~--i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV--ISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE--EEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE--EeHHHHH
Confidence 68999999999999999999999444 5544443
No 421
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.99 E-value=0.011 Score=64.61 Aligned_cols=90 Identities=16% Similarity=0.139 Sum_probs=47.7
Q ss_pred cCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCCh-hhhhccCCCCceEEEECCCCCChHHHHHHH
Q psy11009 684 SYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMP-EFFKGIRRPWKGVLMVGPPGTGKTMLAKAV 762 (863)
Q Consensus 684 ~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~p-e~~~~~~~p~kgvLL~GPPGtGKT~LAraI 762 (863)
..+++...++.+-..+.++..... +...+.+.+.+.+.+...+... ..+.....+++-++|+||||+|||+++..+
T Consensus 16 ~~dv~~~~~~~i~~~~~~~~~~~~---~~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~~~~vi~l~G~~G~GKTTt~akL 92 (272)
T TIGR00064 16 ESDVGYEVVEKIIEALKKELKGKK---VKDAELLKEILKEYLKEILKETDLELIVEENKPNVILFVGVNGVGKTTTIAKL 92 (272)
T ss_pred HCCCCHHHHHHHHHHHHHHHhhcc---CCCHHHHHHHHHHHHHHHHcccchhhcccCCCCeEEEEECCCCCcHHHHHHHH
Confidence 445666666655544444322211 1122334444444332222111 111122234578889999999999999988
Q ss_pred HHHh---CCcEEEEecc
Q psy11009 763 ATEC---GTTFFNVCSS 776 (863)
Q Consensus 763 A~el---~~~~i~vs~s 776 (863)
|..+ +..+.-+++.
T Consensus 93 A~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 93 ANKLKKQGKSVLLAAGD 109 (272)
T ss_pred HHHHHhcCCEEEEEeCC
Confidence 8776 5555555544
No 422
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.99 E-value=0.0067 Score=62.94 Aligned_cols=35 Identities=34% Similarity=0.577 Sum_probs=26.2
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSST 777 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~ 777 (863)
+-+++.||||||||++++.++..+ +..++.+.++.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~ 56 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN 56 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH
Confidence 468889999999999999987665 66777666543
No 423
>PRK13947 shikimate kinase; Provisional
Probab=96.96 E-value=0.00077 Score=67.46 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=28.8
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
+|+|.|+||||||++|+.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999997655
No 424
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=96.95 E-value=0.003 Score=67.34 Aligned_cols=64 Identities=23% Similarity=0.265 Sum_probs=48.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSL 813 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l 813 (863)
.+-.++||+|||||.+++.+|+.+|.+++.+++++..+ ...+..+|.-+- ...+.+.+||++.+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~-~~GaW~cfdefnrl 96 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLA-QSGAWLCFDEFNRL 96 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHH-HHT-EEEEETCCCS
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHh-hcCchhhhhhhhhh
Confidence 47789999999999999999999999999999988543 234455554333 24789999999988
No 425
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=96.91 E-value=0.0022 Score=71.93 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=90.8
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcc--cc
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRG--FY 152 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~--~~ 152 (863)
...+|++ |-+||||+++|+++-..-. --..|.+..+-+.++ +....+...|.. +..|..+ ..
T Consensus 22 ~~pVLI~---------GE~GtGK~~lAr~iH~~s~-r~~~pfv~vnc~~~~--~~~l~~~lfG~~----~g~~~ga~~~~ 85 (329)
T TIGR02974 22 DRPVLII---------GERGTGKELIAARLHYLSK-RWQGPLVKLNCAALS--ENLLDSELFGHE----AGAFTGAQKRH 85 (329)
T ss_pred CCCEEEE---------CCCCChHHHHHHHHHHhcC-ccCCCeEEEeCCCCC--hHHHHHHHhccc----cccccCccccc
Confidence 3456777 9999999999998754200 012344433332221 111111111211 0111100 01
Q ss_pred eeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccC--------CCCCCeEEEEccCCC-------CCcc
Q psy11009 153 IEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT--------FPSTPVQYSIQKGIP-------WDID 217 (863)
Q Consensus 153 l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~--------~~~~~VivIaATN~p-------~~LD 217 (863)
.|.|+.+ ....|||||+|.+-. .+...|+..|+.-. ....+|-||+|||.. ..+.
T Consensus 86 ~G~~~~a--~gGtL~Ldei~~L~~--------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~~g~fr 155 (329)
T TIGR02974 86 QGRFERA--DGGTLFLDELATASL--------LVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAAEGRFR 155 (329)
T ss_pred CCchhhC--CCCEEEeCChHhCCH--------HHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhhcCchH
Confidence 2223333 345899999998853 34455555552111 112368899999874 2456
Q ss_pred HHHhhccceEEEecCCCHHHH----HHHHHHHhccC----CCC--CcccHH---HHhhhCCCCCHHHHHHHHHHHHHH
Q psy11009 218 EALRRRLEKRIYIPLPSKAGR----EALLKINLKEV----KVD--PAVDLT---HIASQLDGYSGADITNVCRDASMM 282 (863)
Q Consensus 218 ~AllRRFD~~I~i~lPd~~~R----~~IL~~~l~~~----~l~--~dvdl~---~LA~~TeG~SGADI~~lv~~Aal~ 282 (863)
+.|..||.. +.|.+|...+| ..+++.|+... ... ..++-+ .|....=--.-.+|++++..++..
T Consensus 156 ~dL~~rl~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~~~~~ 232 (329)
T TIGR02974 156 ADLLDRLAF-DVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVERSVYR 232 (329)
T ss_pred HHHHHHhcc-hhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 777789853 33444554444 44556666432 111 134433 333333112347888888777543
No 426
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=96.89 E-value=0.00037 Score=72.75 Aligned_cols=133 Identities=11% Similarity=0.057 Sum_probs=52.3
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhh--h--------------
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVG--S-------------- 138 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg--~-------------- 138 (863)
.-++|++ |.||||||.+|+.+... +|.|-.+- .+..+.+.+. .| .
T Consensus 22 ~h~lLl~---------GppGtGKTmlA~~l~~l------LP~l~~~e---~le~~~i~s~-~~~~~~~~~~~~~Pfr~ph 82 (206)
T PF01078_consen 22 GHHLLLI---------GPPGTGKTMLARRLPSL------LPPLTEEE---ALEVSKIYSV-AGLGPDEGLIRQRPFRAPH 82 (206)
T ss_dssp C--EEEE---------S-CCCTHHHHHHHHHHC------S--CCEEC---CESS--S-TT----S---EEEE---EEEE-
T ss_pred CCCeEEE---------CCCCCCHHHHHHHHHHh------CCCCchHH---Hhhhcccccc-ccCCCCCceecCCCcccCC
Confidence 3477888 99999999999998885 66553221 0000111111 11 0
Q ss_pred HHHHHHHHhhcc--cceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHh-hccC---------CCCCCeEE
Q psy11009 139 SLNLYRSITNRG--FYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKY-RLLT---------FPSTPVQY 206 (863)
Q Consensus 139 se~~~r~i~~~~--~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~l-d~~~---------~~~~~Viv 206 (863)
-..-...+++.+ ..-|+.+ .+.--|||+||+-.+ .+.++..|+.-| ++.- ..-.++++
T Consensus 83 hs~s~~~liGgg~~~~PGeis--lAh~GVLflDE~~ef--------~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~f~l 152 (206)
T PF01078_consen 83 HSASEAALIGGGRPPRPGEIS--LAHRGVLFLDELNEF--------DRSVLDALRQPLEDGEVTISRAGGSVTYPARFLL 152 (206)
T ss_dssp TT--HHHHHEEGGGEEE-CGG--GGTTSEEEECETTTS---------HHHHHHHHHHHHHSBEEEEETTEEEEEB--EEE
T ss_pred CCcCHHHHhCCCcCCCcCHHH--HhcCCEEEechhhhc--------CHHHHHHHHHHHHCCeEEEEECCceEEEecccEE
Confidence 000012233322 2334333 333459999999866 356677777766 3210 11226799
Q ss_pred EEccCC-----------------------CCCccHHHhhccceEEEecCCCHH
Q psy11009 207 SIQKGI-----------------------PWDIDEALRRRLEKRIYIPLPSKA 236 (863)
Q Consensus 207 IaATN~-----------------------p~~LD~AllRRFD~~I~i~lPd~~ 236 (863)
|||+|- ...|--.|+-|||.+|+++..+.+
T Consensus 153 v~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 153 VAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp EEEE-S-----------------------------------------------
T ss_pred EEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 999774 113344455588888888766554
No 427
>COG1485 Predicted ATPase [General function prediction only]
Probab=96.89 E-value=0.0082 Score=66.97 Aligned_cols=99 Identities=19% Similarity=0.252 Sum_probs=56.8
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHhCCcE-EEEecccccc-------cccchh---HHHHHHHHHHHHhCCCeEEEE
Q psy11009 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTF-FNVCSSTLTS-------KYRGES---EKLVRLLFEMARFYAPSTIFI 807 (863)
Q Consensus 739 ~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~-i~vs~s~l~~-------~~~Ge~---e~~ir~lf~~A~~~~p~ILfI 807 (863)
..+++|+.|+|+-|+|||+|.-..-..+...- ..+..-.++. ...|++ ......++.. ..||.|
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~dpl~~iA~~~~~~-----~~vLCf 136 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTDPLPPIADELAAE-----TRVLCF 136 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCCccHHHHHHHHhc-----CCEEEe
Confidence 45779999999999999999999888775432 1111111111 111222 1111222222 349999
Q ss_pred cCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 808 DEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 808 DEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
||+.-- +-..-.++..|+..|= ...|++++|+|.+
T Consensus 137 DEF~Vt---------DI~DAMiL~rL~~~Lf--------~~GV~lvaTSN~~ 171 (367)
T COG1485 137 DEFEVT---------DIADAMILGRLLEALF--------ARGVVLVATSNTA 171 (367)
T ss_pred eeeeec---------ChHHHHHHHHHHHHHH--------HCCcEEEEeCCCC
Confidence 998531 1122345666665551 1238899999975
No 428
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.89 E-value=0.0083 Score=77.85 Aligned_cols=71 Identities=21% Similarity=0.355 Sum_probs=52.2
Q ss_pred ChHHHHHHHhhhhhcC---CCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHH
Q psy11009 688 DNDLVEMLERDMVQKN---PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 688 d~~~~e~~~~~~~~k~---p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~ 764 (863)
+.++++.+-.++..+. +...+++++|.++..+++...+... ....+-+-++||+|+|||+||++++.
T Consensus 160 E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred HHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHH
Confidence 4455666666655544 4557789999999999998876311 12345788999999999999999988
Q ss_pred HhCC
Q psy11009 765 ECGT 768 (863)
Q Consensus 765 el~~ 768 (863)
.+..
T Consensus 230 ~l~~ 233 (1153)
T PLN03210 230 RLSR 233 (1153)
T ss_pred HHhh
Confidence 8743
No 429
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=96.88 E-value=0.0014 Score=67.75 Aligned_cols=103 Identities=21% Similarity=0.129 Sum_probs=57.3
Q ss_pred cEEEEEecccccc-cccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhccceEEEecCCCHH
Q psy11009 163 PTLAVAKMFSSLA-VQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRLEKRIYIPLPSKA 236 (863)
Q Consensus 163 P~IlFiDEiDal~-~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRFD~~I~i~lPd~~ 236 (863)
.+||+|||+|.+. ..+ ....+...|...++.........+|+.+|+... .-+..+..|+.. +++++=+.+
T Consensus 119 ~~iiviDe~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~ 194 (234)
T PF01637_consen 119 KVIIVIDEFQYLAIASE---EDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKE 194 (234)
T ss_dssp CEEEEEETGGGGGBCTT---TTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HH
T ss_pred cEEEEEecHHHHhhccc---chHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHH
Confidence 4999999999998 222 335556666666665444442344454444211 112234448888 999988999
Q ss_pred HHHHHHHHHhccC-CC-CCcccHHHHhhhCCCCCH
Q psy11009 237 GREALLKINLKEV-KV-DPAVDLTHIASQLDGYSG 269 (863)
Q Consensus 237 ~R~~IL~~~l~~~-~l-~~dvdl~~LA~~TeG~SG 269 (863)
+..++++..+... .+ .++.+++.+...|.|.-+
T Consensus 195 e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~ 229 (234)
T PF01637_consen 195 EAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPR 229 (234)
T ss_dssp HHHHHHHHHHHCC------HHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHH
Confidence 9999999988655 11 146678888888888643
No 430
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=96.88 E-value=0.0059 Score=67.75 Aligned_cols=147 Identities=13% Similarity=0.034 Sum_probs=91.4
Q ss_pred CcCCCcccccccccccc-cchhcc--cchhh-hc--cCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcE
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLV--LPLLA-EE--HGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPT 164 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~--~~~l~-~~--~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~ 164 (863)
|.+|+||+.+|+..++. ++-... -|.+. .. -|+. -....+|.+.+...... | ..+.-
T Consensus 33 G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~-------------i~v~~ir~~~~~~~~~p-~---~~~~k 95 (313)
T PRK05564 33 GEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKS-------------IGVDDIRNIIEEVNKKP-Y---EGDKK 95 (313)
T ss_pred CCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCC-------------CCHHHHHHHHHHHhcCc-c---cCCce
Confidence 99999999999999983 111100 01110 00 0110 12334777776332111 1 23456
Q ss_pred EEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHHHHHH
Q psy11009 165 LAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKI 244 (863)
Q Consensus 165 IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~ 244 (863)
|++||++|.+- ..-.|.||.-|.. +..++++|.+|+.|+.|-|.+..|-. .++|+.|+.++-..+++.
T Consensus 96 v~iI~~ad~m~--------~~a~naLLK~LEe---pp~~t~~il~~~~~~~ll~TI~SRc~-~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 96 VIIIYNSEKMT--------EQAQNAFLKTIEE---PPKGVFIILLCENLEQILDTIKSRCQ-IYKLNRLSKEEIEKFISY 163 (313)
T ss_pred EEEEechhhcC--------HHHHHHHHHHhcC---CCCCeEEEEEeCChHhCcHHHHhhce-eeeCCCcCHHHHHHHHHH
Confidence 99999998773 3345777777753 33366777777889999999988885 899999999998888876
Q ss_pred HhccCCCCCcccHHHHhhhCCCCCH
Q psy11009 245 NLKEVKVDPAVDLTHIASQLDGYSG 269 (863)
Q Consensus 245 ~l~~~~l~~dvdl~~LA~~TeG~SG 269 (863)
..... + ..+++.++..+.|--+
T Consensus 164 ~~~~~--~-~~~~~~l~~~~~g~~~ 185 (313)
T PRK05564 164 KYNDI--K-EEEKKSAIAFSDGIPG 185 (313)
T ss_pred HhcCC--C-HHHHHHHHHHcCCCHH
Confidence 55422 1 2335566766665433
No 431
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.86 E-value=0.0088 Score=63.56 Aligned_cols=162 Identities=14% Similarity=0.048 Sum_probs=99.3
Q ss_pred ceeEeeecccccccCcCCCccccccccccc-ccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceee
Q psy11009 77 GNLTFIFGSEFQSEPVVGSGTYLKHKSPIK-MNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIED 155 (863)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~ 155 (863)
-+||| |+-|||||.+.|+.-. ++=-.+.+.++ +-.+-..+.. .+..+=
T Consensus 87 nVLLw---------GaRGtGKSSLVKA~~~e~~~~glrLVEV-------~k~dl~~Lp~-------l~~~Lr-------- 135 (287)
T COG2607 87 NVLLW---------GARGTGKSSLVKALLNEYADEGLRLVEV-------DKEDLATLPD-------LVELLR-------- 135 (287)
T ss_pred ceEEe---------cCCCCChHHHHHHHHHHHHhcCCeEEEE-------cHHHHhhHHH-------HHHHHh--------
Confidence 47999 9999999999998754 21111222222 1111111222 122222
Q ss_pred eccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhh-ccCCCCCCeEEEEccCCCCCccHH---------------
Q psy11009 156 YEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR-LLTFPSTPVQYSIQKGIPWDIDEA--------------- 219 (863)
Q Consensus 156 ~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld-~~~~~~~~VivIaATN~p~~LD~A--------------- 219 (863)
..+..-|||+|++-- +..+.--..|-..|+ ++.....+|+|-||+||-..|.+-
T Consensus 136 ---~~~~kFIlFcDDLSF-------e~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~~~~~eih~~e 205 (287)
T COG2607 136 ---ARPEKFILFCDDLSF-------EEGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNEGSTGEIHPSE 205 (287)
T ss_pred ---cCCceEEEEecCCCC-------CCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCCCcccccChhH
Confidence 567778999998641 112222334444553 455556699999999997766521
Q ss_pred -------HhhccceEEEecCCCHHHHHHHHHHHhccCCCCC-c--ccHHHHh--hhCCCCCHHHHHHHHHHH
Q psy11009 220 -------LRRRLEKRIYIPLPSKAGREALLKINLKEVKVDP-A--VDLTHIA--SQLDGYSGADITNVCRDA 279 (863)
Q Consensus 220 -------llRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~-d--vdl~~LA--~~TeG~SGADI~~lv~~A 279 (863)
|.-||--.+-|.++|+++=..|+..|.++..++- + .+.+.+. ..-.|=||.--.++++..
T Consensus 206 aveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~~~ 277 (287)
T COG2607 206 AVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIRDL 277 (287)
T ss_pred HHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHHHH
Confidence 2239999999999999999999999998887662 2 2233332 233466776666555543
No 432
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.86 E-value=0.0098 Score=67.61 Aligned_cols=130 Identities=13% Similarity=0.134 Sum_probs=79.9
Q ss_pred hhccccCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHH
Q psy11009 679 ERRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTML 758 (863)
Q Consensus 679 ~~k~~~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~L 758 (863)
-+.+...|++...+..+-+.+...++..... +.+++...+.+.+...+..+..+. . .+++-++|.||+|||||++
T Consensus 148 ~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~---~~~~v~~~~~~~L~~~l~~~~~~~-~-~~~~ii~lvGptGvGKTTt 222 (407)
T PRK12726 148 VKFLKGRGISDTYVADFMQAGRKQFKQVETA---HLDDITDWFVPYLSGKLAVEDSFD-L-SNHRIISLIGQTGVGKTTT 222 (407)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhccccccc---cHHHHHHHHHHHhcCcEeeCCCce-e-cCCeEEEEECCCCCCHHHH
Confidence 3445567888888888777776666654333 357777888777765444443332 1 3457889999999999999
Q ss_pred HHHHHHHh---CCcEEEEecccccc----c------------ccchhHHHHHHHHHHHH-hCCCeEEEEcCCCcc
Q psy11009 759 AKAVATEC---GTTFFNVCSSTLTS----K------------YRGESEKLVRLLFEMAR-FYAPSTIFIDEIDSL 813 (863)
Q Consensus 759 AraIA~el---~~~~i~vs~s~l~~----~------------~~Ge~e~~ir~lf~~A~-~~~p~ILfIDEID~l 813 (863)
+..+|..+ +..+..+++..... . +.......+......++ .....+||||-....
T Consensus 223 ~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 223 LVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 99998766 44555555543321 0 11122333344444333 234589999987554
No 433
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.86 E-value=0.005 Score=61.80 Aligned_cols=71 Identities=15% Similarity=0.083 Sum_probs=44.9
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC--CcEEEEecccccc--------c-------ccchhHHHHHHHHHHHHhCCC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSSTLTS--------K-------YRGESEKLVRLLFEMARFYAP 802 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~--~~~i~vs~s~l~~--------~-------~~Ge~e~~ir~lf~~A~~~~p 802 (863)
.+...+.|.||.|+|||+|.++++.... .--+.++..++.. . +.+.. ..+..+..+-...|
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~--~qrl~laral~~~p 101 (163)
T cd03216 24 RRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGE--RQMVEIARALARNA 101 (163)
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHH--HHHHHHHHHHhcCC
Confidence 3556899999999999999999997752 1112233222110 0 11111 23445566667789
Q ss_pred eEEEEcCCCc
Q psy11009 803 STIFIDEIDS 812 (863)
Q Consensus 803 ~ILfIDEID~ 812 (863)
.+|++||...
T Consensus 102 ~illlDEP~~ 111 (163)
T cd03216 102 RLLILDEPTA 111 (163)
T ss_pred CEEEEECCCc
Confidence 9999999854
No 434
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.86 E-value=0.0022 Score=66.60 Aligned_cols=68 Identities=19% Similarity=0.262 Sum_probs=42.2
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCC----cEEEEe-cccccc---------cccchhHHHHHHHHHHHHhCCCeEEEEcC
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGT----TFFNVC-SSTLTS---------KYRGESEKLVRLLFEMARFYAPSTIFIDE 809 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~----~~i~vs-~s~l~~---------~~~Ge~e~~ir~lf~~A~~~~p~ILfIDE 809 (863)
-+++.||+|+|||+++++++..+.. .++.+. ..++.. ...|.........+..+-...|.+|++||
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aLr~~pd~ii~gE 82 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAALRQDPDVILVGE 82 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHhcCCcCEEEEcC
Confidence 4789999999999999999888742 223221 112110 01122222334455566667899999999
Q ss_pred CC
Q psy11009 810 ID 811 (863)
Q Consensus 810 ID 811 (863)
+-
T Consensus 83 ir 84 (198)
T cd01131 83 MR 84 (198)
T ss_pred CC
Confidence 83
No 435
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.85 E-value=0.0077 Score=63.79 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=48.6
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccccc---------------------------------
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYR--------------------------------- 783 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~--------------------------------- 783 (863)
++...++++||||||||+++..++.+. +.++++++..+-...+.
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~~~ 102 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEWNS 102 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEeccccccccCc
Confidence 344578899999999999999996553 66777776533211100
Q ss_pred chhHHHHHHHHHHHHhCCCeEEEEcCCCccc
Q psy11009 784 GESEKLVRLLFEMARFYAPSTIFIDEIDSLC 814 (863)
Q Consensus 784 Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~ 814 (863)
...+..+..+........|.+|+||++..+.
T Consensus 103 ~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 103 TLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred chHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 0112333444444455688999999998764
No 436
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=96.85 E-value=0.001 Score=65.00 Aligned_cols=31 Identities=26% Similarity=0.557 Sum_probs=28.2
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
+++|+||||||||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999999987654
No 437
>PHA02624 large T antigen; Provisional
Probab=96.85 E-value=0.0027 Score=75.37 Aligned_cols=62 Identities=26% Similarity=0.364 Sum_probs=47.4
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
.+.+||+||||||||+++.+|++.++...+.++++.- +..|+..-.....+.+||++-.-+.
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~------------ks~FwL~pl~D~~~~l~dD~t~~~~ 492 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPD------------KLNFELGCAIDQFMVVFEDVKGQPA 492 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcc------------hhHHHhhhhhhceEEEeeecccccc
Confidence 3589999999999999999999999777888876553 2345554444566999999865544
No 438
>PRK03839 putative kinase; Provisional
Probab=96.85 E-value=0.001 Score=67.54 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=28.4
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.|+|.|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999999997765
No 439
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.0044 Score=66.97 Aligned_cols=104 Identities=13% Similarity=-0.002 Sum_probs=62.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcE--------------EEEecccccccccc---hhHHHHHHHHHHHH----h
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTF--------------FNVCSSTLTSKYRG---ESEKLVRLLFEMAR----F 799 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~--------------i~vs~s~l~~~~~G---e~e~~ir~lf~~A~----~ 799 (863)
++-.+||+||+|+||..+|.++|+.+-+.- ..-+.+++.--+.. -....++.+.+... .
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e 85 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVE 85 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchh
Confidence 456899999999999999999998863210 00011111100000 01122333333221 1
Q ss_pred -CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 800 -YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 800 -~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
....|++||++|.+.. ...+.||+.+ +++..++++|.+|+.|+.|
T Consensus 86 ~~~~KV~II~~ae~m~~------------~AaNaLLK~L------EEPp~~t~fiLit~~~~~l 131 (261)
T PRK05818 86 SNGKKIYIIYGIEKLNK------------QSANSLLKLI------EEPPKNTYGIFTTRNENNI 131 (261)
T ss_pred cCCCEEEEeccHhhhCH------------HHHHHHHHhh------cCCCCCeEEEEEECChHhC
Confidence 2357999999998844 3578899888 4456667888888877654
No 440
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.82 E-value=0.0028 Score=66.78 Aligned_cols=73 Identities=25% Similarity=0.395 Sum_probs=48.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC--------CcEEEEec-ccccccccchhH-------------HHHHHHHHHHH
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG--------TTFFNVCS-STLTSKYRGESE-------------KLVRLLFEMAR 798 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~--------~~~i~vs~-s~l~~~~~Ge~e-------------~~ir~lf~~A~ 798 (863)
.|-+.|+.||||||||++.|-+|+-+. ..+.-++- +++.+...|-.. -.-.-+..+.+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 456899999999999999999988762 23333432 344333322211 11223456677
Q ss_pred hCCCeEEEEcCCCcc
Q psy11009 799 FYAPSTIFIDEIDSL 813 (863)
Q Consensus 799 ~~~p~ILfIDEID~l 813 (863)
.+.|.||++|||...
T Consensus 216 sm~PEViIvDEIGt~ 230 (308)
T COG3854 216 SMSPEVIIVDEIGTE 230 (308)
T ss_pred hcCCcEEEEeccccH
Confidence 899999999999753
No 441
>KOG1968|consensus
Probab=96.81 E-value=0.0012 Score=81.91 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=79.7
Q ss_pred HhhhhhcCCCCccccccchHHHHHHHHHHhhcCCC-ChhhhhccCC--CCc-eEEEECCCCCChHHHHHHHHHHhCCcEE
Q psy11009 696 ERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMW-MPEFFKGIRR--PWK-GVLMVGPPGTGKTMLAKAVATECGTTFF 771 (863)
Q Consensus 696 ~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~-~pe~~~~~~~--p~k-gvLL~GPPGtGKT~LAraIA~el~~~~i 771 (863)
...|.++|.+....++.|.......+.+++..--. .+..|..... ... .++++||||+|||+.+.++|.++|..++
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~ 386 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVV 386 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccccee
Confidence 45789999999999999998888777776632211 1112222221 112 3699999999999999999999999999
Q ss_pred EEecccccccccchh-------HHHHHHHH---HHH--HhCCCeEEEEcCCCcccc
Q psy11009 772 NVCSSTLTSKYRGES-------EKLVRLLF---EMA--RFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 772 ~vs~s~l~~~~~Ge~-------e~~ir~lf---~~A--~~~~p~ILfIDEID~l~~ 815 (863)
+.++++..+++.... .+.+...| ... ......||+|||+|.++.
T Consensus 387 E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~ 442 (871)
T KOG1968|consen 387 EKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFG 442 (871)
T ss_pred ecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccc
Confidence 999998776543211 11122222 100 111233999999999876
No 442
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.81 E-value=0.045 Score=61.23 Aligned_cols=128 Identities=16% Similarity=0.172 Sum_probs=66.3
Q ss_pred ccCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCC-hhhhhccCCCCceEEEECCCCCChHHHHHH
Q psy11009 683 ESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWM-PEFFKGIRRPWKGVLMVGPPGTGKTMLAKA 761 (863)
Q Consensus 683 ~~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~-pe~~~~~~~p~kgvLL~GPPGtGKT~LAra 761 (863)
-..++..+.++.+-..+.++..... +...+.+++.+.+.+...+.. ...+.....++.-++|.||+|+|||+++..
T Consensus 57 ~~~dv~~~~a~~i~~~~~~~~~~~~---~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~k 133 (318)
T PRK10416 57 IEADVGVETTEEIIEELRERVKRKN---LKDPEELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGK 133 (318)
T ss_pred HHCCCCHHHHHHHHHHHHHHHhccC---CCCHHHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHH
Confidence 3456666666665555444322211 222334444454444322221 111111123456788999999999999999
Q ss_pred HHHHh---CCcEEEEecccccc-------cc--------c----c-hhHHHHHHHHHHHHhCCCeEEEEcCCCcc
Q psy11009 762 VATEC---GTTFFNVCSSTLTS-------KY--------R----G-ESEKLVRLLFEMARFYAPSTIFIDEIDSL 813 (863)
Q Consensus 762 IA~el---~~~~i~vs~s~l~~-------~~--------~----G-e~e~~ir~lf~~A~~~~p~ILfIDEID~l 813 (863)
+|..+ +..+.-+++..... .| . + .....+......+......+|+||-...+
T Consensus 134 LA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~~~~D~ViIDTaGr~ 208 (318)
T PRK10416 134 LAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKARGIDVLIIDTAGRL 208 (318)
T ss_pred HHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence 99877 44555554432210 00 0 0 11112223334445566789999987654
No 443
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.80 E-value=0.0087 Score=62.65 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=29.1
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---C------CcEEEEeccc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---G------TTFFNVCSST 777 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~------~~~i~vs~s~ 777 (863)
.+..-+.|+||||+|||+++..+|... + ..+++++...
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 344567899999999999999997664 3 5667777654
No 444
>PRK00625 shikimate kinase; Provisional
Probab=96.77 E-value=0.0014 Score=66.93 Aligned_cols=31 Identities=32% Similarity=0.515 Sum_probs=29.1
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
+|+|.|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 6899999999999999999999999998776
No 445
>KOG1051|consensus
Probab=96.75 E-value=0.013 Score=72.60 Aligned_cols=101 Identities=22% Similarity=0.333 Sum_probs=72.9
Q ss_pred ccccccch-HHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----------CCcEEEEec
Q psy11009 707 RWDDIAEL-TDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC----------GTTFFNVCS 775 (863)
Q Consensus 707 ~~~dLiGl-~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el----------~~~~i~vs~ 775 (863)
.++-++|. ++-.+.+.+.+. ++..++-+|.|.||+|||.++.-+|... +..++.++.
T Consensus 184 kldPvigr~deeirRvi~iL~------------Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEILS------------RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHHHHHHHHHHh------------ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 35567775 444444444331 2233689999999999999999999876 335566665
Q ss_pred cccc--ccccchhHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCC
Q psy11009 776 STLT--SKYRGESEKLVRLLFEMAR-FYAPSTIFIDEIDSLCSRRGS 819 (863)
Q Consensus 776 s~l~--~~~~Ge~e~~ir~lf~~A~-~~~p~ILfIDEID~l~~~R~~ 819 (863)
..+. .++.|+.+.+++.+...+. .....||||||++.+.+..+.
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~ 298 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSN 298 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCc
Confidence 5443 4688999999999999887 446679999999999876543
No 446
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0039 Score=71.86 Aligned_cols=126 Identities=11% Similarity=0.050 Sum_probs=71.3
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHh---hhhhHHHHHHHHhhcccceee------------
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLAL---TVGSSLNLYRSITNRGFYIED------------ 155 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~---~vg~se~~~r~i~~~~~~l~~------------ 155 (863)
|.||||||.+|+-.... +|.| |..|++-.+. +.|.....- .+..+..|..-
T Consensus 205 GpPGtGKTmla~Rl~~l------LPpl-------s~~E~lE~s~I~s~~g~~~~~~-~~~~~rPFr~PHHsaS~~aLvGG 270 (490)
T COG0606 205 GPPGTGKTMLASRLPGL------LPPL-------SIPEALEVSAIHSLAGDLHEGC-PLKIHRPFRAPHHSASLAALVGG 270 (490)
T ss_pred cCCCCchHHhhhhhccc------CCCC-------ChHHHHHHHHHhhhcccccccC-ccceeCCccCCCccchHHHHhCC
Confidence 99999999999998888 8888 6666665553 233222100 01111111111
Q ss_pred e------ccCCCCcEEEEEecccccccccccchhHhHHHHHHHHh-hcc---------CCCCCCeEEEEccCCC------
Q psy11009 156 Y------EVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKY-RLL---------TFPSTPVQYSIQKGIP------ 213 (863)
Q Consensus 156 ~------~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~l-d~~---------~~~~~~VivIaATN~p------ 213 (863)
+ +.+-..--||||||+=-+- +++++.|-+=| ++- -....++.+|+|||-.
T Consensus 271 G~~p~PGeIsLAH~GVLFLDElpef~--------~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~ 342 (490)
T COG0606 271 GGVPRPGEISLAHNGVLFLDELPEFK--------RSILEALREPLENGKIIISRAGSKVTYPARFQLVAAMNPCPCGNLG 342 (490)
T ss_pred CCCCCCCceeeecCCEEEeeccchhh--------HHHHHHHhCccccCcEEEEEcCCeeEEeeeeEEhhhcCCCCccCCC
Confidence 1 2223334599999987653 23333333322 110 0011256778887741
Q ss_pred -----------------CCccHHHhhccceEEEecCCCHHHH
Q psy11009 214 -----------------WDIDEALRRRLEKRIYIPLPSKAGR 238 (863)
Q Consensus 214 -----------------~~LD~AllRRFD~~I~i~lPd~~~R 238 (863)
..|--.|++|||..++++.++..++
T Consensus 343 ~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 343 APLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred CCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 1344567779999999998875444
No 447
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.74 E-value=0.0088 Score=63.02 Aligned_cols=38 Identities=18% Similarity=0.157 Sum_probs=29.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---------CCcEEEEeccc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---------GTTFFNVCSST 777 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---------~~~~i~vs~s~ 777 (863)
.+..-+.|+||||||||+++..+|... +..+++++..+
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 444567899999999999999997553 25777777644
No 448
>KOG1969|consensus
Probab=96.74 E-value=0.0099 Score=71.25 Aligned_cols=167 Identities=11% Similarity=-0.004 Sum_probs=106.4
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEec
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKM 170 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDE 170 (863)
|.||-|||++|.+|||.-=.|++=.+- +|- -.+.--..++..++..-+.++ +-.+|.-|+|||
T Consensus 333 GppGlGKTTLAHViAkqaGYsVvEINA-SDe------------Rt~~~v~~kI~~avq~~s~l~----adsrP~CLViDE 395 (877)
T KOG1969|consen 333 GPPGLGKTTLAHVIAKQAGYSVVEINA-SDE------------RTAPMVKEKIENAVQNHSVLD----ADSRPVCLVIDE 395 (877)
T ss_pred cCCCCChhHHHHHHHHhcCceEEEecc-ccc------------ccHHHHHHHHHHHHhhccccc----cCCCcceEEEec
Confidence 999999999999999942122221111 111 124445667777777666665 678899999999
Q ss_pred ccccccccccchhHhHHHHHHHHhh-------ccCCCCC-----------CeEEEEccCCCCCccHHHhh--ccceEEEe
Q psy11009 171 FSSLAVQKLLRGSKTFRTLCIHKYR-------LLTFPST-----------PVQYSIQKGIPWDIDEALRR--RLEKRIYI 230 (863)
Q Consensus 171 iDal~~~R~~~~~~~v~n~lL~~ld-------~~~~~~~-----------~VivIaATN~p~~LD~AllR--RFD~~I~i 230 (863)
||.-- .-.++.+|..+. |-....+ .==||+-+|. +.-|||.- -|=..|+|
T Consensus 396 IDGa~--------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd--LYaPaLR~Lr~~A~ii~f 465 (877)
T KOG1969|consen 396 IDGAP--------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND--LYAPALRPLRPFAEIIAF 465 (877)
T ss_pred ccCCc--------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecC--ccchhhhhcccceEEEEe
Confidence 99533 222333333321 2111000 0024556664 44577765 69999999
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 231 PLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 231 ~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~ 287 (863)
.+|....-.+=|+....+-.+. .|...|+.+|+ ++-.||+..++.-...+.+..
T Consensus 466 ~~p~~s~Lv~RL~~IC~rE~mr--~d~~aL~~L~e-l~~~DIRsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 466 VPPSQSRLVERLNEICHRENMR--ADSKALNALCE-LTQNDIRSCINTLQFLASNVD 519 (877)
T ss_pred cCCChhHHHHHHHHHHhhhcCC--CCHHHHHHHHH-HhcchHHHHHHHHHHHHHhcc
Confidence 9999887777777666443333 56677777777 777899999999888777643
No 449
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.73 E-value=0.0033 Score=58.49 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=20.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
++++++||+|+|||+++..++..+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHH
Confidence 478999999999999888887666
No 450
>PHA02774 E1; Provisional
Probab=96.72 E-value=0.0049 Score=73.02 Aligned_cols=53 Identities=21% Similarity=0.375 Sum_probs=37.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEE-EecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCC
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFN-VCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEI 810 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~-vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEI 810 (863)
++++|+||||||||++|.+|++.++..++. ++... .|..-....-.++++||+
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s---------------~FwLqpl~d~ki~vlDD~ 488 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS---------------HFWLQPLADAKIALLDDA 488 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc---------------ccccchhccCCEEEEecC
Confidence 589999999999999999999999655543 55321 222122223469999999
No 451
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.72 E-value=0.0036 Score=68.04 Aligned_cols=94 Identities=15% Similarity=0.224 Sum_probs=58.7
Q ss_pred CccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC---CcEEEEe-ccccccc
Q psy11009 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG---TTFFNVC-SSTLTSK 781 (863)
Q Consensus 706 ~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~---~~~i~vs-~s~l~~~ 781 (863)
.++++++-..+..+.+.+++. .+...+++.||+|+|||++++++...+. ..++.+. ..++.-.
T Consensus 57 ~~l~~lg~~~~~~~~l~~~~~-------------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~ 123 (264)
T cd01129 57 LDLEKLGLKPENLEIFRKLLE-------------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP 123 (264)
T ss_pred CCHHHcCCCHHHHHHHHHHHh-------------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC
Confidence 456677666666666665542 2234689999999999999999977763 2344442 2222110
Q ss_pred ------ccchhHHHHHHHHHHHHhCCCeEEEEcCCCc
Q psy11009 782 ------YRGESEKLVRLLFEMARFYAPSTIFIDEIDS 812 (863)
Q Consensus 782 ------~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~ 812 (863)
...+.......+...+....|++|+|+||..
T Consensus 124 ~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 124 GINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 0111112345566666678999999999953
No 452
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.72 E-value=0.0019 Score=73.90 Aligned_cols=79 Identities=16% Similarity=0.180 Sum_probs=47.2
Q ss_pred ceEEEECCCCCChHHHHHHHHHH-hCCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE-CGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES 821 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e-l~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~ 821 (863)
.++++.||+|||||+++.+++.. ....=-.++.+.|..... . +.+ ......++|+|||+..+.-.+
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a~~sG~f~T~a~Lf~~L~----~--~~l---g~v~~~DlLI~DEvgylp~~~---- 276 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVILISGGTITVAKLFYNIS----T--RQI---GLVGRWDVVAFDEVATLKFAK---- 276 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHHHHcCCcCcHHHHHHHHH----H--HHH---hhhccCCEEEEEcCCCCcCCc----
Confidence 59999999999999999999877 211002233344332211 1 111 123457899999998864322
Q ss_pred hhhHHHHHHHHHHHHHh
Q psy11009 822 EHEASRRVKSELLVQMD 838 (863)
Q Consensus 822 ~~e~~~rv~~~LL~~lD 838 (863)
...+++.+...|.
T Consensus 277 ----~~~~v~imK~yMe 289 (449)
T TIGR02688 277 ----PKELIGILKNYME 289 (449)
T ss_pred ----hHHHHHHHHHHHH
Confidence 1235556666665
No 453
>PRK14532 adenylate kinase; Provisional
Probab=96.71 E-value=0.0015 Score=66.62 Aligned_cols=30 Identities=30% Similarity=0.576 Sum_probs=27.1
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
+++|.||||+|||++|+.+|+.+|.+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999999877654
No 454
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.71 E-value=0.013 Score=64.36 Aligned_cols=90 Identities=24% Similarity=0.259 Sum_probs=51.3
Q ss_pred hhccccCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHH
Q psy11009 679 ERRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTML 758 (863)
Q Consensus 679 ~~k~~~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~L 758 (863)
..++...+++..+.+.+...+... ...+.+...+.+.+...+.....-......++.++|+||+|+|||++
T Consensus 140 ~~~L~~~gv~~~la~~L~~~l~~~---------~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~~vGptGvGKTTt 210 (282)
T TIGR03499 140 LERLLRAGVSPELARELLEKLPER---------ADAEDAWRWLREALEKMLPVKPEEDEILEQGGVIALVGPTGVGKTTT 210 (282)
T ss_pred HHHHHHCCCCHHHHHHHHHHhhcc---------CCHHHHHHHHHHHHHHHhccCCccccccCCCeEEEEECCCCCCHHHH
Confidence 345556778888777766655431 12233344444444222211111011122346789999999999999
Q ss_pred HHHHHHHh----C-CcEEEEeccc
Q psy11009 759 AKAVATEC----G-TTFFNVCSST 777 (863)
Q Consensus 759 AraIA~el----~-~~~i~vs~s~ 777 (863)
+..+|..+ + ..+..++...
T Consensus 211 ~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 211 LAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred HHHHHHHHHHHcCCCeEEEEECCc
Confidence 99998765 3 5666666544
No 455
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.71 E-value=0.011 Score=63.72 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=28.2
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCcEEEEec
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC----GTTFFNVCS 775 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el----~~~~i~vs~ 775 (863)
.+..-++|.||||+|||+++..+|..+ +..+++++.
T Consensus 28 ~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 28 RKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 455578899999999999999886654 667777665
No 456
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.71 E-value=0.0027 Score=68.63 Aligned_cols=74 Identities=28% Similarity=0.378 Sum_probs=49.5
Q ss_pred CceEEEECCCCCChHHHHHHHH------HHhCCcEEEEecccccccccc-hhHHHHHHHHHHH--------HhCCCeEEE
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVA------TECGTTFFNVCSSTLTSKYRG-ESEKLVRLLFEMA--------RFYAPSTIF 806 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA------~el~~~~i~vs~s~l~~~~~G-e~e~~ir~lf~~A--------~~~~p~ILf 806 (863)
...+||.||.|.||++||+-|- +++..+|++|+|.++.+.-.- .--.-++..|.-| +....+.||
T Consensus 208 r~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlf 287 (531)
T COG4650 208 RAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLF 287 (531)
T ss_pred cCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEe
Confidence 3479999999999999999884 446889999999987542100 0001122222222 234578999
Q ss_pred EcCCCcccc
Q psy11009 807 IDEIDSLCS 815 (863)
Q Consensus 807 IDEID~l~~ 815 (863)
+|||..+..
T Consensus 288 ldeigelga 296 (531)
T COG4650 288 LDEIGELGA 296 (531)
T ss_pred hHhhhhcCc
Confidence 999988844
No 457
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.71 E-value=0.013 Score=61.68 Aligned_cols=22 Identities=32% Similarity=0.545 Sum_probs=20.3
Q ss_pred ceEEEECCCCCChHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~ 764 (863)
+.++|+||.|+|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6799999999999999999983
No 458
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.70 E-value=0.0081 Score=60.33 Aligned_cols=24 Identities=33% Similarity=0.603 Sum_probs=22.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
..+.++|+||+|||+++.-++..+
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHH
Confidence 478999999999999999999887
No 459
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.69 E-value=0.002 Score=64.59 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=37.1
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc---EEEEecccc
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT---FFNVCSSTL 778 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~---~i~vs~s~l 778 (863)
++|.++..+++...+. ......++.++|+|++|+|||++.+.+...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~---------~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD---------AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG---------GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH---------HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6888999999988662 1122344789999999999999999987776333 666665544
No 460
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.69 E-value=0.0019 Score=78.15 Aligned_cols=52 Identities=35% Similarity=0.502 Sum_probs=44.4
Q ss_pred cCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 702 k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
..|+..|++++|++++++.|...+. ..++++|+||||||||++|++++..+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~--------------~~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAK--------------QRRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHH--------------hCCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 4567889999999999999888663 114799999999999999999998875
No 461
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.69 E-value=0.012 Score=63.54 Aligned_cols=26 Identities=35% Similarity=0.556 Sum_probs=23.4
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCC
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGT 768 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~ 768 (863)
..++|+||+|||||++++.+++.+..
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 57999999999999999999988754
No 462
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.68 E-value=0.0089 Score=60.80 Aligned_cols=34 Identities=21% Similarity=0.428 Sum_probs=29.6
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~ 777 (863)
-+|+.||||+|||++|..++..++.+++++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 4899999999999999999999888877776554
No 463
>KOG3347|consensus
Probab=96.68 E-value=0.0015 Score=64.58 Aligned_cols=32 Identities=34% Similarity=0.727 Sum_probs=29.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.++|++|-||||||+++..+|...+.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 48999999999999999999999999998875
No 464
>PRK09354 recA recombinase A; Provisional
Probab=96.67 E-value=0.012 Score=66.42 Aligned_cols=74 Identities=23% Similarity=0.234 Sum_probs=47.9
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccc----------------ccchhHHHHHHHHHHHHhCCC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSK----------------YRGESEKLVRLLFEMARFYAP 802 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~----------------~~Ge~e~~ir~lf~~A~~~~p 802 (863)
.+-++++||||||||+||-.++... |...++++...-... .+...+..+..+-...+...+
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li~s~~~ 139 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLVRSGAV 139 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhhcCCC
Confidence 3457799999999999998775443 667777776441110 011122333333344455678
Q ss_pred eEEEEcCCCcccc
Q psy11009 803 STIFIDEIDSLCS 815 (863)
Q Consensus 803 ~ILfIDEID~l~~ 815 (863)
.+|+||=+-++.+
T Consensus 140 ~lIVIDSvaaL~~ 152 (349)
T PRK09354 140 DLIVVDSVAALVP 152 (349)
T ss_pred CEEEEeChhhhcc
Confidence 9999999999876
No 465
>PRK13949 shikimate kinase; Provisional
Probab=96.65 E-value=0.0017 Score=65.81 Aligned_cols=32 Identities=41% Similarity=0.643 Sum_probs=29.6
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
+.++|+||||+|||++++.+|+.++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999999988876
No 466
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.65 E-value=0.017 Score=67.05 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=48.4
Q ss_pred hccccCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHH
Q psy11009 680 RRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLA 759 (863)
Q Consensus 680 ~k~~~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LA 759 (863)
..+...|++...++.+-..+......... .....+.+.|.+.+. ...+.. . .+.+.++|.||+|+|||+++
T Consensus 168 ~~L~~~gv~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~L~~~l~--~~~~~~---~-~~~~~i~~vGptGvGKTTt~ 238 (424)
T PRK05703 168 KRLKRSGLSPEIAEKLLKLLLEHMPPRER---TAWRYLLELLANMIP--VRVEDI---L-KQGGVVALVGPTGVGKTTTL 238 (424)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHHhhhhHH---HHHHHHHHHHHHHhC--cccccc---c-cCCcEEEEECCCCCCHHHHH
Confidence 34445667777777665555444332211 112233333333331 111111 1 12357899999999999988
Q ss_pred HHHHHHh-----CCcEEEEeccc
Q psy11009 760 KAVATEC-----GTTFFNVCSST 777 (863)
Q Consensus 760 raIA~el-----~~~~i~vs~s~ 777 (863)
..+|..+ +..+..++...
T Consensus 239 ~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 239 AKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred HHHHHHHHHhcCCCeEEEEECCc
Confidence 8887654 34566666654
No 467
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.64 E-value=0.032 Score=64.28 Aligned_cols=167 Identities=17% Similarity=0.163 Sum_probs=82.9
Q ss_pred hccccCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCC-ChhhhhccC-CCCceEEEECCCCCChHH
Q psy11009 680 RRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMW-MPEFFKGIR-RPWKGVLMVGPPGTGKTM 757 (863)
Q Consensus 680 ~k~~~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~-~pe~~~~~~-~p~kgvLL~GPPGtGKT~ 757 (863)
.++...|++...++.+-..+........ ....+++...+.+.+...+. .+..+...+ .++.-++|.||+|+|||+
T Consensus 162 ~~Ll~~gV~~~la~~Li~~l~~~~~~~~---~~~~~~~~~~l~~~L~~~l~~~~~~~~~~g~~~~~vi~lvGptGvGKTT 238 (432)
T PRK12724 162 ERLVREGMSQSYVEEMASKLEERLSPVD---QGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGPTGSGKTT 238 (432)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhcccc---ccchHHHHHHHHHHHHHhcccchhhhhhcccCCCeEEEEECCCCCCHHH
Confidence 4455678888877776555544333221 12233444444444432221 112222211 223468899999999999
Q ss_pred HHHHHHHHh----CCcEEEEeccccccc-------c------cchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC
Q psy11009 758 LAKAVATEC----GTTFFNVCSSTLTSK-------Y------RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE 820 (863)
Q Consensus 758 LAraIA~el----~~~~i~vs~s~l~~~-------~------~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~ 820 (863)
++..+|... |..+..+++...... | .-........+..........+||||=......
T Consensus 239 taaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~VLIDTaGr~~r----- 313 (432)
T PRK12724 239 SIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELILIDTAGYSHR----- 313 (432)
T ss_pred HHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEEEEeCCCCCcc-----
Confidence 999998754 444544554432111 0 001111223334444445678999997532211
Q ss_pred chhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCC
Q psy11009 821 SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 821 ~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~ 860 (863)
+ ...+.+|...++..... .+...++|+.+|..+.
T Consensus 314 --d---~~~l~eL~~~~~~~~~~-~~~e~~LVLsAt~~~~ 347 (432)
T PRK12724 314 --N---LEQLERMQSFYSCFGEK-DSVENLLVLSSTSSYH 347 (432)
T ss_pred --C---HHHHHHHHHHHHhhcCC-CCCeEEEEEeCCCCHH
Confidence 1 12334444444333221 1234578888776653
No 468
>PRK06762 hypothetical protein; Provisional
Probab=96.63 E-value=0.0053 Score=61.26 Aligned_cols=37 Identities=24% Similarity=0.402 Sum_probs=30.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~ 779 (863)
.-++|+|+||||||++|+.++..++..++.++...+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 5688999999999999999999996566666655443
No 469
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.0085 Score=59.38 Aligned_cols=71 Identities=23% Similarity=0.295 Sum_probs=44.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCC--cEEEEecccccc----------c----ccchhHHHHHHHHHHHHhCCCeE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGT--TFFNVCSSTLTS----------K----YRGESEKLVRLLFEMARFYAPST 804 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~--~~i~vs~s~l~~----------~----~~Ge~e~~ir~lf~~A~~~~p~I 804 (863)
+...+.|.||+|+|||++.++++..+.. --+.++...+.. . +.+...++ ..+..+-...|.+
T Consensus 24 ~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r--~~l~~~l~~~~~i 101 (157)
T cd00267 24 AGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQR--VALARALLLNPDL 101 (157)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHH--HHHHHHHhcCCCE
Confidence 4467899999999999999999987632 112333322111 0 22233333 3344444567999
Q ss_pred EEEcCCCcc
Q psy11009 805 IFIDEIDSL 813 (863)
Q Consensus 805 LfIDEID~l 813 (863)
+++||...=
T Consensus 102 ~ilDEp~~~ 110 (157)
T cd00267 102 LLLDEPTSG 110 (157)
T ss_pred EEEeCCCcC
Confidence 999998643
No 470
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=96.63 E-value=0.0042 Score=70.70 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=21.6
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
.-.+++||||||||+|++.|++...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHH
Confidence 3577889999999999999998773
No 471
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.62 E-value=0.021 Score=60.87 Aligned_cols=37 Identities=27% Similarity=0.380 Sum_probs=27.8
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHH---hCCcEEEEecc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATE---CGTTFFNVCSS 776 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~e---l~~~~i~vs~s 776 (863)
.+...+|++||||||||++|..++.+ -|.+.++++..
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~e 58 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALE 58 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEee
Confidence 45568899999999999998876543 26677776643
No 472
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.60 E-value=0.0019 Score=65.30 Aligned_cols=29 Identities=28% Similarity=0.560 Sum_probs=25.5
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 745 VLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
++++||||+|||++|+.+|..++...+.+
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is~ 30 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLSA 30 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 68999999999999999999998765544
No 473
>PRK10536 hypothetical protein; Provisional
Probab=96.60 E-value=0.011 Score=63.91 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=20.5
Q ss_pred eEEEECCCCCChHHHHHHHHHH
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~e 765 (863)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 7899999999999999999885
No 474
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.59 E-value=0.0029 Score=68.49 Aligned_cols=97 Identities=24% Similarity=0.283 Sum_probs=58.6
Q ss_pred CCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC---CcEEEEec-ccccc
Q psy11009 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG---TTFFNVCS-STLTS 780 (863)
Q Consensus 705 ~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~---~~~i~vs~-s~l~~ 780 (863)
..++++++-.....+.+.+++... -+..+++|+.||+|+|||++++++...+. ..++.+.. .++.-
T Consensus 100 ~~sle~l~~~~~~~~~~~~~l~~~----------v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l 169 (270)
T PF00437_consen 100 PFSLEDLGESGSIPEEIAEFLRSA----------VRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRL 169 (270)
T ss_dssp --CHCCCCHTHHCHHHHHHHHHHC----------HHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--
T ss_pred cccHhhccCchhhHHHHHHHHhhc----------cccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceee
Confidence 446777776666666666655211 12236899999999999999999998873 34444432 22211
Q ss_pred c------cc-chhHHHHHHHHHHHHhCCCeEEEEcCCC
Q psy11009 781 K------YR-GESEKLVRLLFEMARFYAPSTIFIDEID 811 (863)
Q Consensus 781 ~------~~-Ge~e~~ir~lf~~A~~~~p~ILfIDEID 811 (863)
. +. .........++..+-+..|++|+|+||.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 170 PGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred cccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 1 01 1122344666777778899999999994
No 475
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=96.57 E-value=0.0023 Score=69.75 Aligned_cols=69 Identities=26% Similarity=0.306 Sum_probs=43.2
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCC----------cEEEEe-ccccccccc-------ch------hHHHHHHHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGT----------TFFNVC-SSTLTSKYR-------GE------SEKLVRLLFEMA 797 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~----------~~i~vs-~s~l~~~~~-------Ge------~e~~ir~lf~~A 797 (863)
+++++|.||||+|||++.++++..+.. .+..++ ..++...+. |. .......++..+
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k~~~~~~~i 190 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPKAEGMMMLI 190 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccccccccccccchHHHHHHHHH
Confidence 369999999999999999999988732 221111 112211110 10 001123456667
Q ss_pred HhCCCeEEEEcCC
Q psy11009 798 RFYAPSTIFIDEI 810 (863)
Q Consensus 798 ~~~~p~ILfIDEI 810 (863)
+...|.+|++||+
T Consensus 191 ~~~~P~villDE~ 203 (270)
T TIGR02858 191 RSMSPDVIVVDEI 203 (270)
T ss_pred HhCCCCEEEEeCC
Confidence 7789999999996
No 476
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=96.57 E-value=0.0052 Score=68.76 Aligned_cols=172 Identities=12% Similarity=0.088 Sum_probs=88.0
Q ss_pred CcCCCcccccccccccccchhc--ccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEE
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSL--VLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVA 168 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~--~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFi 168 (863)
|-+||||+++|+++-.. |- ..|.+..+-+.++ +....+...|.....+.+... ...|.++.+. .-.|||
T Consensus 36 GE~GtGK~~lA~~iH~~---s~r~~~pfv~v~c~~~~--~~~~~~~lfg~~~~~~~g~~~--~~~g~l~~a~--gGtL~l 106 (326)
T PRK11608 36 GERGTGKELIASRLHYL---SSRWQGPFISLNCAALN--ENLLDSELFGHEAGAFTGAQK--RHPGRFERAD--GGTLFL 106 (326)
T ss_pred CCCCCcHHHHHHHHHHh---CCccCCCeEEEeCCCCC--HHHHHHHHccccccccCCccc--ccCCchhccC--CCeEEe
Confidence 89999999999988532 21 2455544443321 111222222311100000000 0123333333 348999
Q ss_pred ecccccccccccchhHhHHHHHHHHhhc-c----C---CCCCCeEEEEccCCC-------CCccHHHhhccc-eEEEecC
Q psy11009 169 KMFSSLAVQKLLRGSKTFRTLCIHKYRL-L----T---FPSTPVQYSIQKGIP-------WDIDEALRRRLE-KRIYIPL 232 (863)
Q Consensus 169 DEiDal~~~R~~~~~~~v~n~lL~~ld~-~----~---~~~~~VivIaATN~p-------~~LD~AllRRFD-~~I~i~l 232 (863)
||+|.+-. .+...|+..++. . . ....+|-||++|+.. ..+.+.|..||. ..|++
T Consensus 107 ~~i~~L~~--------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~l-- 176 (326)
T PRK11608 107 DELATAPM--------LVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVAEGKFRADLLDRLAFDVVQL-- 176 (326)
T ss_pred CChhhCCH--------HHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHHHcCCchHHHHHhcCCCEEEC--
Confidence 99999863 344455555521 1 1 111257889888874 356678888995 35554
Q ss_pred CCHHHH----HHHHHHHhccC----CCC--CcccHHHHhhhC-CCCCH--HHHHHHHHHHHH
Q psy11009 233 PSKAGR----EALLKINLKEV----KVD--PAVDLTHIASQL-DGYSG--ADITNVCRDASM 281 (863)
Q Consensus 233 Pd~~~R----~~IL~~~l~~~----~l~--~dvdl~~LA~~T-eG~SG--ADI~~lv~~Aal 281 (863)
|...+| ..|+++|+... ... ..++-+.+..+. -.+.| .+|++++..|+.
T Consensus 177 PpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 177 PPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred CChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 554444 44566666322 111 234433333322 12444 788888887754
No 477
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.56 E-value=0.013 Score=61.67 Aligned_cols=95 Identities=25% Similarity=0.352 Sum_probs=58.7
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCcEEEEeccccccc--------------------------c-------
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC----GTTFFNVCSSTLTSK--------------------------Y------- 782 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el----~~~~i~vs~s~l~~~--------------------------~------- 782 (863)
.+...+|+.||||+|||+++..++... |.++++++..+-... +
T Consensus 17 p~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~ 96 (226)
T PF06745_consen 17 PKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWS 96 (226)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-T
T ss_pred CCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccccc
Confidence 445678999999999999988765332 778888775331100 0
Q ss_pred cchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh
Q psy11009 783 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 783 ~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD 838 (863)
....+.....+....+...+.+++||-+..+... ......++.+..|...+.
T Consensus 97 ~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l~~~----~~~~~~r~~l~~l~~~l~ 148 (226)
T PF06745_consen 97 PNDLEELLSKIREAIEELKPDRVVIDSLSALLLY----DDPEELRRFLRALIKFLK 148 (226)
T ss_dssp SCCHHHHHHHHHHHHHHHTSSEEEEETHHHHTTS----SSGGGHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECHHHHhhc----CCHHHHHHHHHHHHHHHH
Confidence 0122344455555666677899999999998221 123334556667776663
No 478
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=96.55 E-value=0.0099 Score=71.93 Aligned_cols=103 Identities=13% Similarity=0.181 Sum_probs=66.5
Q ss_pred CeEEEEccCCC--CCccHHHhhccc---eEEEec--CCC-HHHHHHHHHHHhc---cCCCCCcccHHHHhhhCC------
Q psy11009 203 PVQYSIQKGIP--WDIDEALRRRLE---KRIYIP--LPS-KAGREALLKINLK---EVKVDPAVDLTHIASQLD------ 265 (863)
Q Consensus 203 ~VivIaATN~p--~~LD~AllRRFD---~~I~i~--lPd-~~~R~~IL~~~l~---~~~l~~dvdl~~LA~~Te------ 265 (863)
++.||+++|.. ..+||+|+.||+ .+++|+ .|+ .+.|..+.+.... +....+.++-+.++...+
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~a 347 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRA 347 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHH
Confidence 68899999975 579999999999 777774 354 5666555543332 221112344322222221
Q ss_pred ------CCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcC
Q psy11009 266 ------GYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNK 322 (863)
Q Consensus 266 ------G~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~p 322 (863)
-.+..+|.++|+.|...|..+. ...|+.+|+.+|++....
T Consensus 348 g~r~~lsl~~R~L~~llR~A~~iA~~~~-----------------~~~I~~ehV~~Ai~~~~~ 393 (608)
T TIGR00764 348 GRKDHLTLRLRELGGLVRAAGDIAKSSG-----------------KVYVTAEHVLKAKKLAKT 393 (608)
T ss_pred hcccccCCCHHHHHHHHHHHHHHHHhcC-----------------CceecHHHHHHHHHHHHH
Confidence 1456899999999855544332 347999999999887654
No 479
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.55 E-value=0.0023 Score=61.92 Aligned_cols=30 Identities=30% Similarity=0.641 Sum_probs=28.0
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
+++.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 679999999999999999999999998776
No 480
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=96.54 E-value=0.014 Score=70.10 Aligned_cols=129 Identities=12% Similarity=-0.090 Sum_probs=81.0
Q ss_pred ceeEeeecccccccCcCCCcccccccccccccchhcc--cchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcc---c
Q psy11009 77 GNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLV--LPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRG---F 151 (863)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~---~ 151 (863)
|+|+- +-+|+|||.++...+.+ +- .|....-+|-+ ....||.- .+...+..+ +
T Consensus 27 Gv~i~---------g~~G~~ks~~~r~l~~l----lp~~~p~r~~p~~~t-------~~~L~Gg~--Dl~~~l~~g~~~~ 84 (584)
T PRK13406 27 GVVLR---------ARAGPVRDRWLAALRAL----LPAGTPLRRLPPGIA-------DDRLLGGL--DLAATLRAGRPVA 84 (584)
T ss_pred eEEEE---------cCCCcHHHHHHHHHHHh----cCCCCCcccCCCCCc-------HHHccCCc--hHHhHhhcCCcCC
Confidence 68888 99999999999998876 11 24444455444 44445532 112222111 1
Q ss_pred ceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhh-cc--------C-CCCCCeEEEEccCCC---CCccH
Q psy11009 152 YIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR-LL--------T-FPSTPVQYSIQKGIP---WDIDE 218 (863)
Q Consensus 152 ~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld-~~--------~-~~~~~VivIaATN~p---~~LD~ 218 (863)
.-|+. +....-|||+||+.-+- ..++..|+.-|+ |. . ....+++|||+-|-. ..|-+
T Consensus 85 ~pGll--a~Ah~GvL~lDe~n~~~--------~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~ 154 (584)
T PRK13406 85 QRGLL--AEADGGVLVLAMAERLE--------PGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPA 154 (584)
T ss_pred CCCce--eeccCCEEEecCcccCC--------HHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCH
Confidence 12322 23344599999998663 567788888773 21 1 112367888864322 35889
Q ss_pred HHhhccceEEEecCCCHHH
Q psy11009 219 ALRRRLEKRIYIPLPSKAG 237 (863)
Q Consensus 219 AllRRFD~~I~i~lPd~~~ 237 (863)
+++-||+.+|.++.|...+
T Consensus 155 ~lLDRf~l~v~v~~~~~~~ 173 (584)
T PRK13406 155 ALADRLAFHLDLDGLALRD 173 (584)
T ss_pred HhHhheEEEEEcCCCChHH
Confidence 9999999999999887654
No 481
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.0045 Score=69.32 Aligned_cols=90 Identities=12% Similarity=0.148 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccH
Q psy11009 139 SLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDE 218 (863)
Q Consensus 139 se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~ 218 (863)
....+|.+.+...+-. ...+.-|++||++|.+- ....|.||..|..... ++.+|.+|+.++.|-+
T Consensus 94 ~id~iR~l~~~~~~~p----~~~~~kV~iiEp~~~Ld--------~~a~naLLk~LEep~~---~~~~Ilvth~~~~ll~ 158 (325)
T PRK08699 94 KIDAVREIIDNVYLTS----VRGGLRVILIHPAESMN--------LQAANSLLKVLEEPPP---QVVFLLVSHAADKVLP 158 (325)
T ss_pred CHHHHHHHHHHHhhCc----ccCCceEEEEechhhCC--------HHHHHHHHHHHHhCcC---CCEEEEEeCChHhChH
Confidence 3566788776542221 23445688999999884 3445777777765432 4667778999999999
Q ss_pred HHhhccceEEEecCCCHHHHHHHHHH
Q psy11009 219 ALRRRLEKRIYIPLPSKAGREALLKI 244 (863)
Q Consensus 219 AllRRFD~~I~i~lPd~~~R~~IL~~ 244 (863)
.+.+|. ..+.|++|+.++..++|..
T Consensus 159 ti~SRc-~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 159 TIKSRC-RKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred HHHHHh-hhhcCCCCCHHHHHHHHHh
Confidence 988877 4577899999988887754
No 482
>PRK06217 hypothetical protein; Validated
Probab=96.51 E-value=0.0025 Score=65.06 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=28.6
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.|+|.|+||+|||++|+++++.++.+++.++
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999999987765
No 483
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.50 E-value=0.0057 Score=66.84 Aligned_cols=26 Identities=42% Similarity=0.627 Sum_probs=22.0
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
.+++||+||+|||||.+++.+-..+.
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CCcEEEECCCCCchhHHHHhhhccCC
Confidence 36899999999999999988766553
No 484
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.50 E-value=0.005 Score=69.37 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=45.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC----CcEEEEe-ccccc---------ccccchhHHHHHHHHHHHHhCCCeEEE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG----TTFFNVC-SSTLT---------SKYRGESEKLVRLLFEMARFYAPSTIF 806 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~----~~~i~vs-~s~l~---------~~~~Ge~e~~ir~lf~~A~~~~p~ILf 806 (863)
+...+|++||+|+|||++.+++...+. ..++.+. ..++. ....|.........+..+-...|.+|+
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~pd~i~ 200 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALREDPDVIL 200 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccCCCEEE
Confidence 345789999999999999999988764 2333332 11211 111222112234555666678999999
Q ss_pred EcCCC
Q psy11009 807 IDEID 811 (863)
Q Consensus 807 IDEID 811 (863)
+||+.
T Consensus 201 vgEir 205 (343)
T TIGR01420 201 IGEMR 205 (343)
T ss_pred EeCCC
Confidence 99994
No 485
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.50 E-value=0.0057 Score=63.18 Aligned_cols=107 Identities=20% Similarity=0.184 Sum_probs=44.8
Q ss_pred EEEECCCCCChHHHHHHH-HHHh---CCcEEEEecccccc----cccchhHH-------------HHHHHHHHHHhCCCe
Q psy11009 745 VLMVGPPGTGKTMLAKAV-ATEC---GTTFFNVCSSTLTS----KYRGESEK-------------LVRLLFEMARFYAPS 803 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraI-A~el---~~~~i~vs~s~l~~----~~~Ge~e~-------------~ir~lf~~A~~~~p~ 803 (863)
.+++|.||+|||+.|-.. .... |.+++. +...|.- .+.+.... ..............+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987555 4332 555544 4332221 11010000 001111211112578
Q ss_pred EEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCCC
Q psy11009 804 TIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 804 ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ID 863 (863)
+|+|||+..+++.|..... . ....+ ++|... ++ ..+-|+.+|-.|..||
T Consensus 82 liviDEa~~~~~~r~~~~~-~-~~~~~-~~l~~h-------Rh-~g~diiliTQ~~~~id 130 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKGK-K-VPEII-EFLAQH-------RH-YGWDIILITQSPSQID 130 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHH-HGGGGC-------CC-TT-EEEEEES-GGGB-
T ss_pred EEEEECChhhcCCCccccc-c-chHHH-HHHHHh-------Cc-CCcEEEEEeCCHHHHh
Confidence 9999999999998755211 1 11222 222221 11 2255778888888776
No 486
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.50 E-value=0.0024 Score=64.70 Aligned_cols=36 Identities=14% Similarity=0.366 Sum_probs=30.2
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
+-++|.||||+|||++|+.++..++.+++.++...+
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 568999999999999999999999887776655433
No 487
>PRK14531 adenylate kinase; Provisional
Probab=96.49 E-value=0.0029 Score=64.68 Aligned_cols=31 Identities=29% Similarity=0.604 Sum_probs=27.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
+.++++||||+|||++++.+|..+|.+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 4699999999999999999999999887654
No 488
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=96.48 E-value=0.0026 Score=62.36 Aligned_cols=29 Identities=31% Similarity=0.658 Sum_probs=25.7
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 745 VLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
++|+|+||+|||++|+.++..++..++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~~ 30 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFIDG 30 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEeC
Confidence 68999999999999999999998877643
No 489
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.48 E-value=0.014 Score=60.48 Aligned_cols=21 Identities=24% Similarity=0.512 Sum_probs=19.8
Q ss_pred ceEEEECCCCCChHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVA 763 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA 763 (863)
.-++|+||.|+|||++.++++
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 569999999999999999998
No 490
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=96.47 E-value=0.0027 Score=64.69 Aligned_cols=29 Identities=34% Similarity=0.728 Sum_probs=26.4
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 745 VLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
|+|+||||+|||++|+.+|..++..++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 79999999999999999999998877654
No 491
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.46 E-value=0.0071 Score=66.41 Aligned_cols=88 Identities=16% Similarity=0.144 Sum_probs=57.5
Q ss_pred HHHHHHHhhcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHH
Q psy11009 140 LNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEA 219 (863)
Q Consensus 140 e~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~A 219 (863)
...||.+.......+ ...+.-||+|||+|.+-. ...|.++.-|. .+..+..+|.+||.|+.|=+-
T Consensus 91 ~~~vr~~~~~~~~~~----~~~~~kviiidead~mt~--------~A~nallk~lE---ep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 91 VEQVRELAEFLSESP----LEGGYKVVIIDEADKLTE--------DAANALLKTLE---EPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred HHHHHHHHHHhccCC----CCCCceEEEeCcHHHHhH--------HHHHHHHHHhc---cCCCCeEEEEEcCChhhccch
Confidence 445666655422211 235667999999998854 44577776664 333467888899999988886
Q ss_pred HhhccceEEEecCCCHHHHHHHHH
Q psy11009 220 LRRRLEKRIYIPLPSKAGREALLK 243 (863)
Q Consensus 220 llRRFD~~I~i~lPd~~~R~~IL~ 243 (863)
+..|-. +|+|++|+...+....+
T Consensus 156 I~SRc~-~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 156 IRSRCQ-RIRFKPPSRLEAIAWLE 178 (325)
T ss_pred hhhcce-eeecCCchHHHHHHHhh
Confidence 666653 46666677666666555
No 492
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.46 E-value=0.022 Score=66.73 Aligned_cols=76 Identities=25% Similarity=0.267 Sum_probs=50.9
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc------cchh--------HHHHHHHHHHHHhCCC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY------RGES--------EKLVRLLFEMARFYAP 802 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~------~Ge~--------e~~ir~lf~~A~~~~p 802 (863)
.+..-+||.|+||+|||+++..++..+ +.++++++..+-.... .|-. +..+..+........|
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~~~ 171 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEENP 171 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhcCC
Confidence 444578899999999999999987765 4578888764432111 0100 1123445555566789
Q ss_pred eEEEEcCCCcccc
Q psy11009 803 STIFIDEIDSLCS 815 (863)
Q Consensus 803 ~ILfIDEID~l~~ 815 (863)
.+|+||.|-.+..
T Consensus 172 ~~vVIDSIq~l~~ 184 (454)
T TIGR00416 172 QACVIDSIQTLYS 184 (454)
T ss_pred cEEEEecchhhcc
Confidence 9999999998864
No 493
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.46 E-value=0.052 Score=62.92 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=46.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccc---------------ccc----c-hhHHHHHHHHHHH
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTS---------------KYR----G-ESEKLVRLLFEMA 797 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~---------------~~~----G-e~e~~ir~lf~~A 797 (863)
++.-++|+||+|+|||+++..+|..+ |..+.-+++..... .+. + ......+..++.+
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 44678999999999999999998777 66666666643220 001 0 1122233445555
Q ss_pred HhCCCeEEEEcCCCcc
Q psy11009 798 RFYAPSTIFIDEIDSL 813 (863)
Q Consensus 798 ~~~~p~ILfIDEID~l 813 (863)
+.....+||||-...+
T Consensus 179 ~~~~~DvViIDTaGr~ 194 (429)
T TIGR01425 179 KKENFDIIIVDTSGRH 194 (429)
T ss_pred HhCCCCEEEEECCCCC
Confidence 5556789999987543
No 494
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.44 E-value=0.0055 Score=69.80 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=45.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC-----CcEEEEec-cccc-----------ccccchhHHHHHHHHHHHHhCCCeEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECG-----TTFFNVCS-STLT-----------SKYRGESEKLVRLLFEMARFYAPSTI 805 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~-----~~~i~vs~-s~l~-----------~~~~Ge~e~~ir~lf~~A~~~~p~IL 805 (863)
..+|++||+|+|||++++++..++. ..++.+.- .++. ...+|............+-+..|++|
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I 229 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKII 229 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEE
Confidence 4689999999999999999988772 34454422 2221 11112222234455666677899999
Q ss_pred EEcCCCc
Q psy11009 806 FIDEIDS 812 (863)
Q Consensus 806 fIDEID~ 812 (863)
+++|+..
T Consensus 230 ~vGEiRd 236 (372)
T TIGR02525 230 GVGEIRD 236 (372)
T ss_pred eeCCCCC
Confidence 9999963
No 495
>PF14516 AAA_35: AAA-like domain
Probab=96.44 E-value=0.034 Score=62.42 Aligned_cols=42 Identities=21% Similarity=0.196 Sum_probs=33.3
Q ss_pred ccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccc
Q psy11009 737 GIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTL 778 (863)
Q Consensus 737 ~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l 778 (863)
.+..++.-+.+.||..+|||++...+...+ +...+.++...+
T Consensus 26 ~i~~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~ 70 (331)
T PF14516_consen 26 EIVQPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQL 70 (331)
T ss_pred HHhcCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecC
Confidence 334556789999999999999998887665 778888887654
No 496
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=96.44 E-value=0.0024 Score=63.51 Aligned_cols=29 Identities=31% Similarity=0.617 Sum_probs=25.5
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 745 VLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
++|.||||||||++|+.++..++..++..
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~ 29 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEG 29 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 47899999999999999999999776544
No 497
>PRK14530 adenylate kinase; Provisional
Probab=96.43 E-value=0.0032 Score=65.91 Aligned_cols=31 Identities=29% Similarity=0.572 Sum_probs=27.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
+.++|.||||+|||++|+.+|+.++.+++.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 3699999999999999999999999887744
No 498
>PRK13948 shikimate kinase; Provisional
Probab=96.43 E-value=0.0036 Score=64.42 Aligned_cols=35 Identities=26% Similarity=0.315 Sum_probs=31.8
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.++..++|.|++|||||++++.+|..++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45679999999999999999999999999998665
No 499
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.42 E-value=0.017 Score=60.07 Aligned_cols=71 Identities=23% Similarity=0.273 Sum_probs=41.4
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccc-------------------ccc-hhHHHHHHHHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSK-------------------YRG-ESEKLVRLLFEMAR 798 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~-------------------~~G-e~e~~ir~lf~~A~ 798 (863)
|+-++|.||+|+|||+.+--+|..+ +..+--++....... ... ......+...+..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3678999999999999888777665 444444443332110 001 12233445555555
Q ss_pred hCCCeEEEEcCCCc
Q psy11009 799 FYAPSTIFIDEIDS 812 (863)
Q Consensus 799 ~~~p~ILfIDEID~ 812 (863)
.....+||||-...
T Consensus 81 ~~~~D~vlIDT~Gr 94 (196)
T PF00448_consen 81 KKGYDLVLIDTAGR 94 (196)
T ss_dssp HTTSSEEEEEE-SS
T ss_pred hcCCCEEEEecCCc
Confidence 55668999998643
No 500
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.41 E-value=0.02 Score=57.68 Aligned_cols=27 Identities=37% Similarity=0.615 Sum_probs=23.8
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.+...+.|.||+|+|||+|.++++...
T Consensus 26 ~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 26 KPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 345679999999999999999999876
Done!