Query psy11009
Match_columns 863
No_of_seqs 712 out of 4297
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 15:51:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11009.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11009hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3cf2_A TER ATPase, transitiona 100.0 5.1E-61 1.7E-65 578.8 22.4 398 59-863 221-630 (806)
2 2ce7_A Cell division protein F 100.0 2E-48 6.8E-53 447.4 18.4 337 63-465 36-405 (476)
3 2dhr_A FTSH; AAA+ protein, hex 100.0 1.1E-45 3.8E-50 426.8 16.3 334 64-465 52-415 (499)
4 4b4t_J 26S protease regulatory 100.0 1.4E-45 4.8E-50 413.4 15.4 218 58-324 164-393 (405)
5 4b4t_I 26S protease regulatory 100.0 7.7E-45 2.6E-49 408.7 11.6 224 59-331 199-434 (437)
6 3cf2_A TER ATPase, transitiona 100.0 1.6E-44 5.4E-49 435.5 6.4 246 59-336 494-759 (806)
7 4b4t_L 26S protease subunit RP 100.0 1.3E-43 4.6E-48 402.5 13.5 223 58-329 197-431 (437)
8 4b4t_M 26S protease regulatory 100.0 1.2E-43 3.9E-48 402.6 12.6 219 59-326 198-428 (434)
9 4b4t_H 26S protease regulatory 100.0 8.6E-43 2.9E-47 395.4 14.9 218 59-325 226-455 (467)
10 4b4t_K 26S protease regulatory 100.0 1.9E-42 6.4E-47 392.4 15.0 224 59-331 189-426 (428)
11 1ypw_A Transitional endoplasmi 100.0 1.4E-40 4.8E-45 405.2 15.2 397 60-863 222-630 (806)
12 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.3E-35 1.1E-39 322.3 16.8 245 60-335 30-314 (322)
13 3eie_A Vacuolar protein sortin 100.0 5.6E-34 1.9E-38 311.8 15.7 246 59-335 35-313 (322)
14 2x8a_A Nuclear valosin-contain 100.0 9.8E-34 3.4E-38 304.1 14.3 233 59-329 27-273 (274)
15 2qp9_X Vacuolar protein sortin 100.0 1.5E-33 5.3E-38 313.0 15.0 247 59-336 68-347 (355)
16 3cf0_A Transitional endoplasmi 100.0 3.2E-33 1.1E-37 303.2 11.7 244 60-335 33-296 (301)
17 2zan_A Vacuolar protein sortin 100.0 3E-33 1E-37 319.7 11.9 247 59-336 151-437 (444)
18 4b4t_J 26S protease regulatory 100.0 1.1E-31 3.8E-36 301.0 17.3 161 699-863 138-301 (405)
19 4b4t_I 26S protease regulatory 100.0 1.5E-30 5E-35 292.9 15.8 160 700-863 173-335 (437)
20 4b4t_L 26S protease subunit RP 100.0 3E-30 1E-34 293.0 16.9 160 700-863 172-334 (437)
21 4b4t_M 26S protease regulatory 100.0 2.6E-30 8.8E-35 293.4 15.5 160 700-863 172-334 (434)
22 4b4t_H 26S protease regulatory 100.0 6.5E-30 2.2E-34 290.1 17.3 160 700-863 200-362 (467)
23 4b4t_K 26S protease regulatory 100.0 5.4E-30 1.9E-34 290.4 15.9 160 700-863 163-325 (428)
24 1ypw_A Transitional endoplasmi 100.0 1.3E-31 4.4E-36 326.5 -8.8 247 59-337 494-760 (806)
25 3hu3_A Transitional endoplasmi 100.0 3.9E-29 1.3E-33 288.8 10.0 238 60-329 222-468 (489)
26 3b9p_A CG5977-PA, isoform A; A 100.0 1.4E-28 4.8E-33 264.2 12.8 239 60-335 39-287 (297)
27 1lv7_A FTSH; alpha/beta domain 100.0 4.7E-28 1.6E-32 255.3 16.1 212 63-323 32-255 (257)
28 3d8b_A Fidgetin-like protein 1 100.0 3.2E-28 1.1E-32 270.3 13.9 240 60-335 102-349 (357)
29 3h4m_A Proteasome-activating n 99.9 8.8E-28 3E-32 256.2 13.2 214 60-322 35-260 (285)
30 2qz4_A Paraplegin; AAA+, SPG7, 99.9 1E-27 3.6E-32 251.6 7.3 215 63-326 26-255 (262)
31 1ixz_A ATP-dependent metallopr 99.9 1.3E-26 4.6E-31 243.7 14.5 207 65-317 38-253 (254)
32 3vfd_A Spastin; ATPase, microt 99.9 1.5E-26 5E-31 259.4 15.0 240 59-334 132-379 (389)
33 2r62_A Cell division protease 99.9 4.3E-28 1.5E-32 256.6 -3.6 217 63-327 31-260 (268)
34 1iy2_A ATP-dependent metallopr 99.9 2.7E-25 9.4E-30 237.5 16.0 207 65-317 62-277 (278)
35 1xwi_A SKD1 protein; VPS4B, AA 99.9 1.5E-24 5.3E-29 237.6 17.3 160 700-863 3-163 (322)
36 2zan_A Vacuolar protein sortin 99.9 7.3E-25 2.5E-29 250.4 11.5 169 691-863 116-285 (444)
37 3eie_A Vacuolar protein sortin 99.9 2.8E-24 9.5E-29 234.9 14.4 162 698-863 7-168 (322)
38 2qp9_X Vacuolar protein sortin 99.9 3.6E-24 1.2E-28 237.7 13.5 170 690-863 32-201 (355)
39 3t15_A Ribulose bisphosphate c 99.9 3.5E-25 1.2E-29 239.6 3.3 170 73-275 34-223 (293)
40 3pxi_A Negative regulator of g 99.9 1.8E-22 6.2E-27 244.6 22.3 134 709-861 491-632 (758)
41 3cf0_A Transitional endoplasmi 99.9 1.4E-23 4.7E-28 227.5 10.0 162 698-863 4-168 (301)
42 2rpa_A Katanin P60 ATPase-cont 99.9 7.6E-24 2.6E-28 183.9 6.3 70 440-510 8-77 (78)
43 3d8b_A Fidgetin-like protein 1 99.9 1.8E-22 6.3E-27 223.9 15.8 176 685-863 60-235 (357)
44 1qvr_A CLPB protein; coiled co 99.9 3.5E-22 1.2E-26 245.2 19.9 146 75-248 191-347 (854)
45 3b9p_A CG5977-PA, isoform A; A 99.9 2E-22 6.9E-27 216.2 14.3 172 690-863 2-173 (297)
46 3vfd_A Spastin; ATPase, microt 99.9 9E-23 3.1E-27 228.6 10.8 173 688-863 94-266 (389)
47 1r6b_X CLPA protein; AAA+, N-t 99.9 2E-21 6.9E-26 235.3 18.9 146 74-248 206-364 (758)
48 2x8a_A Nuclear valosin-contain 99.9 9.6E-22 3.3E-26 210.9 14.0 157 702-863 3-160 (274)
49 1lv7_A FTSH; alpha/beta domain 99.8 6.6E-21 2.3E-25 200.7 15.4 160 699-863 2-164 (257)
50 3h4m_A Proteasome-activating n 99.8 9.9E-21 3.4E-25 201.6 15.9 159 701-863 9-170 (285)
51 2ce7_A Cell division protein F 99.8 7E-21 2.4E-25 218.9 15.5 156 703-863 10-168 (476)
52 3hu3_A Transitional endoplasmi 99.8 5.7E-21 2E-25 220.7 13.4 156 703-863 198-354 (489)
53 2qz4_A Paraplegin; AAA+, SPG7, 99.8 2.1E-20 7.1E-25 196.0 14.1 155 704-863 1-159 (262)
54 2dhr_A FTSH; AAA+ protein, hex 99.8 9.5E-19 3.2E-23 202.3 14.0 155 704-863 26-183 (499)
55 3t15_A Ribulose bisphosphate c 99.8 2.8E-19 9.6E-24 193.2 8.2 124 740-863 34-169 (293)
56 2r62_A Cell division protease 99.8 1.7E-20 6E-25 198.2 -1.3 159 701-863 3-165 (268)
57 1ixz_A ATP-dependent metallopr 99.8 5.4E-18 1.8E-22 178.1 14.4 160 699-863 6-168 (254)
58 2c9o_A RUVB-like 1; hexameric 99.7 3E-18 1E-22 196.2 5.5 151 703-863 31-204 (456)
59 1iy2_A ATP-dependent metallopr 99.7 9.5E-17 3.3E-21 171.3 15.5 157 702-863 33-192 (278)
60 2c9o_A RUVB-like 1; hexameric 99.7 6.4E-20 2.2E-24 210.0 -10.4 166 75-278 63-262 (456)
61 2di4_A Zinc protease, cell div 99.7 2E-17 6.9E-22 173.4 2.6 121 327-465 7-148 (238)
62 3syl_A Protein CBBX; photosynt 99.6 3.4E-16 1.2E-20 168.3 8.3 183 76-288 68-267 (309)
63 3m6a_A ATP-dependent protease 99.6 2.4E-16 8.1E-21 184.4 5.9 200 91-324 115-345 (543)
64 3uk6_A RUVB-like 2; hexameric 99.6 8.4E-15 2.9E-19 161.3 11.6 208 76-321 71-331 (368)
65 1d2n_A N-ethylmaleimide-sensit 99.5 1.3E-15 4.6E-20 161.6 3.9 196 73-323 62-267 (272)
66 3syl_A Protein CBBX; photosynt 99.5 2.2E-14 7.7E-19 154.1 11.4 137 710-859 32-179 (309)
67 3pfi_A Holliday junction ATP-d 99.5 1.2E-13 4.2E-18 150.5 16.4 181 76-321 56-255 (338)
68 2krk_A 26S protease regulatory 99.5 2.6E-14 8.8E-19 127.4 8.3 77 230-323 8-84 (86)
69 3hws_A ATP-dependent CLP prote 99.5 1.1E-14 3.8E-19 161.2 7.3 130 711-840 17-157 (363)
70 3kw6_A 26S protease regulatory 99.5 3.6E-14 1.2E-18 123.7 8.7 75 231-322 1-75 (78)
71 1g41_A Heat shock protein HSLU 99.5 6.4E-15 2.2E-19 167.7 4.9 141 709-863 15-160 (444)
72 1g41_A Heat shock protein HSLU 99.5 1.6E-15 5.4E-20 172.6 -0.1 129 76-242 51-188 (444)
73 3aji_B S6C, proteasome (prosom 99.5 2.8E-14 9.5E-19 125.8 7.5 81 234-332 2-82 (83)
74 1d2n_A N-ethylmaleimide-sensit 99.5 7.3E-14 2.5E-18 148.2 11.4 145 709-861 33-179 (272)
75 3pfi_A Holliday junction ATP-d 99.5 2.6E-13 8.8E-18 148.0 14.9 141 696-863 16-168 (338)
76 1ofh_A ATP-dependent HSL prote 99.5 7.2E-14 2.5E-18 149.4 9.8 154 709-862 15-185 (310)
77 3vlf_B 26S protease regulatory 99.4 1.3E-13 4.4E-18 123.3 8.4 78 234-328 2-79 (88)
78 1jbk_A CLPB protein; beta barr 99.4 1.8E-13 6.2E-18 134.2 10.1 144 693-860 6-162 (195)
79 2p65_A Hypothetical protein PF 99.4 2.7E-13 9.1E-18 133.1 10.4 141 697-860 10-163 (187)
80 3u61_B DNA polymerase accessor 99.4 4.6E-13 1.6E-17 145.3 12.5 132 697-863 14-150 (324)
81 1ofh_A ATP-dependent HSL prote 99.4 5.9E-13 2E-17 142.3 11.6 211 75-321 50-300 (310)
82 1sxj_A Activator 1 95 kDa subu 99.4 2.7E-13 9.1E-18 157.6 8.1 120 697-816 27-163 (516)
83 1um8_A ATP-dependent CLP prote 99.4 5.3E-13 1.8E-17 148.3 10.0 131 710-840 22-178 (376)
84 3hws_A ATP-dependent CLP prote 99.4 2.3E-13 7.8E-18 150.7 6.4 190 75-287 51-326 (363)
85 1hqc_A RUVB; extended AAA-ATPa 99.4 1.1E-12 3.9E-17 141.5 10.4 181 76-320 39-238 (324)
86 3cmw_A Protein RECA, recombina 99.4 5.7E-13 2E-17 171.1 9.0 151 704-859 1015-1218(1706)
87 1hqc_A RUVB; extended AAA-ATPa 99.4 2.9E-12 9.8E-17 138.4 13.2 138 700-863 3-152 (324)
88 3m6a_A ATP-dependent protease 99.4 3.4E-13 1.1E-17 157.8 6.1 142 707-863 79-238 (543)
89 2dzn_B 26S protease regulatory 99.3 3.8E-13 1.3E-17 118.5 4.6 80 236-332 1-81 (82)
90 3uk6_A RUVB-like 2; hexameric 99.3 3.4E-12 1.1E-16 140.5 12.2 74 701-781 35-111 (368)
91 2v1u_A Cell division control p 99.3 8.3E-12 2.9E-16 136.9 15.3 139 160-321 128-277 (387)
92 3n70_A Transport activator; si 99.3 1.3E-12 4.3E-17 126.3 7.6 112 710-859 2-116 (145)
93 3pxg_A Negative regulator of g 99.3 7.3E-13 2.5E-17 152.2 6.4 172 75-285 201-387 (468)
94 2r44_A Uncharacterized protein 99.3 6.3E-12 2.2E-16 136.9 13.2 195 76-321 47-298 (331)
95 1g8p_A Magnesium-chelatase 38 99.3 6.1E-12 2.1E-16 137.1 12.7 134 162-321 144-323 (350)
96 2chg_A Replication factor C sm 99.3 1.6E-11 5.6E-16 123.0 14.2 130 698-862 6-145 (226)
97 2z4s_A Chromosomal replication 99.3 4.6E-12 1.6E-16 144.5 10.5 134 162-322 194-334 (440)
98 3co5_A Putative two-component 99.3 7.9E-13 2.7E-17 127.5 3.5 112 710-859 5-116 (143)
99 3bos_A Putative DNA replicatio 99.3 7.3E-12 2.5E-16 128.1 10.7 132 161-318 103-241 (242)
100 1jbk_A CLPB protein; beta barr 99.3 6.3E-13 2.2E-17 130.3 2.6 144 76-242 44-194 (195)
101 2chg_A Replication factor C sm 99.3 2.2E-11 7.6E-16 122.0 13.8 124 160-318 100-224 (226)
102 1njg_A DNA polymerase III subu 99.3 3.3E-11 1.1E-15 122.0 14.7 139 141-317 109-248 (250)
103 4fcw_A Chaperone protein CLPB; 99.3 3E-12 1E-16 137.4 6.6 117 163-287 120-282 (311)
104 3pvs_A Replication-associated 99.3 1.3E-11 4.5E-16 141.1 12.3 112 697-839 14-132 (447)
105 3pxg_A Negative regulator of g 99.2 7.9E-12 2.7E-16 143.6 9.3 125 697-860 168-302 (468)
106 1l8q_A Chromosomal replication 99.2 1.4E-11 4.8E-16 133.9 10.4 193 76-320 38-240 (324)
107 1qvr_A CLPB protein; coiled co 99.2 6.9E-12 2.3E-16 154.1 8.9 144 692-859 153-309 (854)
108 3f9v_A Minichromosome maintena 99.2 3.3E-12 1.1E-16 150.9 5.3 203 72-323 324-590 (595)
109 1sxj_D Activator 1 41 kDa subu 99.2 1.4E-11 4.7E-16 134.3 9.5 132 695-862 23-176 (353)
110 3pvs_A Replication-associated 99.2 5.5E-12 1.9E-16 144.2 6.0 186 77-323 52-247 (447)
111 1l8q_A Chromosomal replication 99.2 3.8E-11 1.3E-15 130.4 12.0 134 703-861 5-144 (324)
112 2chq_A Replication factor C sm 99.2 1.4E-11 4.6E-16 132.0 7.6 134 697-862 5-145 (319)
113 1r6b_X CLPA protein; AAA+, N-t 99.2 5.4E-11 1.9E-15 144.0 13.4 138 699-859 176-325 (758)
114 1iqp_A RFCS; clamp loader, ext 99.2 5.7E-11 1.9E-15 127.6 12.0 135 696-862 12-153 (327)
115 1njg_A DNA polymerase III subu 99.2 3.9E-11 1.3E-15 121.4 9.8 132 696-862 10-169 (250)
116 3pxi_A Negative regulator of g 99.2 2.4E-11 8.3E-16 147.3 8.4 128 694-860 165-302 (758)
117 2qby_B CDC6 homolog 3, cell di 99.2 6.2E-11 2.1E-15 130.6 10.6 128 163-321 134-271 (384)
118 1in4_A RUVB, holliday junction 99.1 4E-10 1.4E-14 123.6 16.0 180 77-321 53-251 (334)
119 1sxj_B Activator 1 37 kDa subu 99.1 1E-10 3.5E-15 125.4 10.6 130 697-862 9-150 (323)
120 4fcw_A Chaperone protein CLPB; 99.1 1.9E-10 6.6E-15 123.3 12.7 133 709-858 17-169 (311)
121 1jr3_A DNA polymerase III subu 99.1 1.3E-10 4.5E-15 127.5 11.3 131 697-862 4-162 (373)
122 2p65_A Hypothetical protein PF 99.1 1.9E-11 6.6E-16 119.8 3.9 132 75-234 43-187 (187)
123 2bjv_A PSP operon transcriptio 99.1 1.6E-10 5.6E-15 121.7 11.2 129 706-859 3-151 (265)
124 2qby_A CDC6 homolog 1, cell di 99.1 2.1E-10 7.1E-15 125.6 12.4 137 160-321 126-273 (386)
125 1fnn_A CDC6P, cell division co 99.1 4.8E-10 1.6E-14 123.3 15.1 144 160-329 123-283 (389)
126 1sxj_E Activator 1 40 kDa subu 99.1 2.6E-10 8.8E-15 124.7 12.1 132 698-862 3-177 (354)
127 2v1u_A Cell division control p 99.1 5.1E-10 1.7E-14 122.7 14.1 133 708-859 18-177 (387)
128 3nbx_X ATPase RAVA; AAA+ ATPas 99.1 1.3E-10 4.3E-15 134.6 9.3 127 162-297 109-280 (500)
129 1sxj_C Activator 1 40 kDa subu 99.1 3E-10 1E-14 124.4 11.2 130 697-862 13-153 (340)
130 2z4s_A Chromosomal replication 99.1 3.7E-10 1.3E-14 128.8 12.0 134 703-861 99-240 (440)
131 3te6_A Regulatory protein SIR3 99.1 2.9E-10 1E-14 124.4 10.7 126 711-861 22-175 (318)
132 3ec2_A DNA replication protein 99.1 2.5E-10 8.5E-15 113.4 8.7 134 701-861 2-145 (180)
133 1ojl_A Transcriptional regulat 99.1 1.8E-10 6.2E-15 125.0 8.2 126 709-859 2-147 (304)
134 1um8_A ATP-dependent CLP prote 99.1 1.4E-10 4.8E-15 128.8 7.4 190 75-287 72-343 (376)
135 1g8p_A Magnesium-chelatase 38 99.0 6.9E-10 2.4E-14 120.8 10.2 54 702-767 17-70 (350)
136 1sxj_D Activator 1 41 kDa subu 99.0 1.1E-09 3.7E-14 119.2 11.7 129 161-318 132-261 (353)
137 3te6_A Regulatory protein SIR3 99.0 6E-10 2.1E-14 121.9 9.0 140 91-249 52-214 (318)
138 1in4_A RUVB, holliday junction 99.0 2.8E-09 9.5E-14 116.9 13.7 103 698-815 14-116 (334)
139 2qby_A CDC6 homolog 1, cell di 99.0 3.3E-09 1.1E-13 116.0 13.9 133 707-860 18-174 (386)
140 1sxj_A Activator 1 95 kDa subu 99.0 1E-09 3.5E-14 127.5 10.3 190 76-320 78-274 (516)
141 3bos_A Putative DNA replicatio 99.0 1.7E-09 5.8E-14 110.4 10.8 94 700-815 18-118 (242)
142 2qby_B CDC6 homolog 3, cell di 98.9 2.5E-09 8.6E-14 117.7 11.3 124 709-859 20-174 (384)
143 1jr3_A DNA polymerase III subu 98.9 5E-09 1.7E-13 114.9 12.7 169 91-280 45-225 (373)
144 2r44_A Uncharacterized protein 98.9 9.7E-10 3.3E-14 119.5 6.9 134 697-859 15-160 (331)
145 2chq_A Replication factor C sm 98.9 5.5E-09 1.9E-13 111.6 11.8 95 160-266 100-195 (319)
146 1fnn_A CDC6P, cell division co 98.9 1.7E-08 5.9E-13 110.9 15.2 131 709-859 17-169 (389)
147 3u61_B DNA polymerase accessor 98.9 2.5E-09 8.7E-14 115.8 7.5 144 91-266 55-207 (324)
148 4akg_A Glutathione S-transfera 98.8 2.2E-09 7.6E-14 143.6 7.2 87 160-248 1334-1433(2695)
149 1iqp_A RFCS; clamp loader, ext 98.8 1.3E-08 4.4E-13 109.2 11.8 104 161-277 109-213 (327)
150 1sxj_B Activator 1 37 kDa subu 98.8 7.7E-09 2.6E-13 110.8 9.9 165 78-278 45-211 (323)
151 2w58_A DNAI, primosome compone 98.8 4.7E-09 1.6E-13 105.8 7.1 101 702-814 18-128 (202)
152 3nbx_X ATPase RAVA; AAA+ ATPas 98.8 3.8E-09 1.3E-13 122.3 6.5 103 709-838 22-134 (500)
153 2gno_A DNA polymerase III, gam 98.7 4.2E-08 1.4E-12 106.6 11.1 115 713-862 1-125 (305)
154 1sxj_E Activator 1 40 kDa subu 98.7 3.2E-08 1.1E-12 108.0 10.0 107 160-279 132-240 (354)
155 1w5s_A Origin recognition comp 98.7 7.1E-08 2.4E-12 107.0 12.4 142 160-321 136-294 (412)
156 2vhj_A Ntpase P4, P4; non- hyd 98.7 1.8E-08 6.1E-13 110.1 6.7 111 742-858 123-235 (331)
157 3cmw_A Protein RECA, recombina 98.6 5E-09 1.7E-13 135.0 2.0 112 76-213 1081-1218(1706)
158 1a5t_A Delta prime, HOLB; zinc 98.6 9.8E-08 3.3E-12 104.6 11.8 117 714-862 7-151 (334)
159 2bjv_A PSP operon transcriptio 98.6 4.2E-08 1.4E-12 103.3 8.2 183 76-283 30-240 (265)
160 3f9v_A Minichromosome maintena 98.6 5.9E-09 2E-13 123.2 1.3 135 709-860 295-445 (595)
161 1a5t_A Delta prime, HOLB; zinc 98.6 6.8E-08 2.3E-12 105.8 9.4 161 91-276 31-205 (334)
162 1ojl_A Transcriptional regulat 98.6 9E-09 3.1E-13 111.7 1.9 183 75-282 25-234 (304)
163 3k1j_A LON protease, ATP-depen 98.6 1.1E-08 3.7E-13 121.1 2.4 145 162-332 201-386 (604)
164 2qgz_A Helicase loader, putati 98.6 4.1E-08 1.4E-12 106.7 6.7 99 704-814 119-227 (308)
165 1sxj_C Activator 1 40 kDa subu 98.6 4.4E-08 1.5E-12 107.1 6.2 157 91-277 53-210 (340)
166 2kjq_A DNAA-related protein; s 98.6 9.8E-08 3.3E-12 92.9 8.0 60 741-815 35-97 (149)
167 3k1j_A LON protease, ATP-depen 98.5 9.4E-08 3.2E-12 113.1 6.7 53 701-767 33-85 (604)
168 1w5s_A Origin recognition comp 98.4 1.2E-06 4.3E-11 96.9 13.1 138 709-859 22-189 (412)
169 1ny5_A Transcriptional regulat 98.4 3E-07 1E-11 103.0 7.4 127 708-859 136-282 (387)
170 3co5_A Putative two-component 98.4 3.2E-07 1.1E-11 88.0 5.8 109 75-232 27-141 (143)
171 3cmu_A Protein RECA, recombina 98.3 5.8E-07 2E-11 117.3 8.8 114 740-858 1425-1562(2050)
172 3n70_A Transport activator; si 98.2 2.8E-07 9.6E-12 88.6 2.3 104 76-231 25-142 (145)
173 4akg_A Glutathione S-transfera 98.1 5.3E-06 1.8E-10 111.6 12.0 131 71-242 641-789 (2695)
174 3dzd_A Transcriptional regulat 98.1 4.2E-06 1.4E-10 93.1 9.4 126 709-859 129-273 (368)
175 1svm_A Large T antigen; AAA+ f 98.1 3.1E-06 1.1E-10 94.6 7.0 100 740-862 167-267 (377)
176 2gno_A DNA polymerase III, gam 98.0 5.5E-06 1.9E-10 89.9 7.3 126 91-246 25-152 (305)
177 1tue_A Replication protein E1; 98.0 4.2E-06 1.4E-10 86.0 4.7 31 742-772 58-88 (212)
178 2qen_A Walker-type ATPase; unk 97.9 7.3E-05 2.5E-09 80.3 14.1 57 704-776 7-63 (350)
179 2r2a_A Uncharacterized protein 97.9 8.1E-06 2.8E-10 83.4 5.6 108 744-863 7-137 (199)
180 3f8t_A Predicted ATPase involv 97.8 2.2E-05 7.4E-10 89.7 7.7 133 165-323 303-486 (506)
181 2fna_A Conserved hypothetical 97.8 0.0002 6.9E-09 77.0 14.6 58 704-777 8-65 (357)
182 1u0j_A DNA replication protein 97.8 3.2E-05 1.1E-09 82.5 7.1 28 741-768 103-130 (267)
183 1ye8_A Protein THEP1, hypothet 97.6 0.00031 1E-08 70.1 11.9 28 744-771 2-29 (178)
184 2vhj_A Ntpase P4, P4; non- hyd 97.6 1.3E-05 4.4E-10 87.6 1.2 132 55-221 101-243 (331)
185 3upu_A ATP-dependent DNA helic 97.6 0.0001 3.5E-09 84.1 8.2 70 694-776 9-83 (459)
186 2r2a_A Uncharacterized protein 97.5 3.7E-05 1.3E-09 78.4 3.7 74 159-238 84-158 (199)
187 3cmu_A Protein RECA, recombina 97.5 0.00024 8.3E-09 93.2 10.5 116 727-842 713-856 (2050)
188 3hr8_A Protein RECA; alpha and 97.4 0.00062 2.1E-08 75.5 12.0 102 740-841 59-184 (356)
189 1xp8_A RECA protein, recombina 97.4 0.00059 2E-08 75.9 11.8 77 740-816 72-167 (366)
190 2w0m_A SSO2452; RECA, SSPF, un 97.4 0.0008 2.7E-08 67.9 11.5 35 741-775 22-59 (235)
191 3f8t_A Predicted ATPase involv 97.3 5.8E-05 2E-09 86.2 2.4 125 711-860 215-350 (506)
192 3ec2_A DNA replication protein 97.3 4.3E-05 1.5E-09 75.3 1.2 24 75-107 38-61 (180)
193 1n0w_A DNA repair protein RAD5 97.3 0.00061 2.1E-08 69.6 9.7 77 740-816 22-134 (243)
194 2cvh_A DNA repair and recombin 97.3 0.002 6.7E-08 64.7 12.8 38 740-777 18-55 (220)
195 2zr9_A Protein RECA, recombina 97.3 0.00054 1.8E-08 75.7 9.1 76 740-815 59-153 (349)
196 1qhx_A CPT, protein (chloramph 97.2 0.00066 2.3E-08 66.2 8.1 34 743-776 4-37 (178)
197 3vkg_A Dynein heavy chain, cyt 97.2 0.00037 1.3E-08 94.9 8.1 85 161-247 1373-1470(3245)
198 2kjq_A DNAA-related protein; s 97.2 0.00019 6.5E-09 69.5 3.6 62 162-232 83-147 (149)
199 1svm_A Large T antigen; AAA+ f 97.1 2.5E-05 8.5E-10 87.3 -3.4 62 164-232 218-284 (377)
200 1u94_A RECA protein, recombina 97.1 0.00087 3E-08 74.3 8.6 76 740-815 61-155 (356)
201 2z43_A DNA repair and recombin 97.1 0.00098 3.4E-08 72.5 8.9 76 740-815 105-217 (324)
202 2fna_A Conserved hypothetical 97.1 0.001 3.5E-08 71.4 8.7 107 162-278 137-252 (357)
203 3trf_A Shikimate kinase, SK; a 97.0 0.00035 1.2E-08 68.7 4.2 33 742-774 5-37 (185)
204 3lda_A DNA repair protein RAD5 97.0 0.0047 1.6E-07 69.5 13.8 77 740-816 176-288 (400)
205 1v5w_A DMC1, meiotic recombina 97.0 0.0022 7.5E-08 70.4 10.7 76 740-815 120-233 (343)
206 2ehv_A Hypothetical protein PH 97.0 0.0024 8.1E-08 65.4 10.0 36 740-775 28-67 (251)
207 1pzn_A RAD51, DNA repair and r 97.0 0.0053 1.8E-07 67.6 13.2 38 740-777 129-175 (349)
208 4a74_A DNA repair and recombin 96.9 0.0026 8.9E-08 64.2 9.8 27 740-766 23-49 (231)
209 3vaa_A Shikimate kinase, SK; s 96.9 0.00058 2E-08 68.5 4.5 34 741-774 24-57 (199)
210 3dm5_A SRP54, signal recogniti 96.8 0.0035 1.2E-07 71.3 10.8 73 741-813 99-194 (443)
211 1ny5_A Transcriptional regulat 96.8 0.00087 3E-08 74.9 4.9 110 164-282 233-369 (387)
212 3kb2_A SPBC2 prophage-derived 96.7 0.00095 3.3E-08 64.3 4.4 31 744-774 3-33 (173)
213 1z6t_A APAF-1, apoptotic prote 96.7 0.014 4.8E-07 67.9 15.1 52 703-764 118-169 (591)
214 1via_A Shikimate kinase; struc 96.7 0.00082 2.8E-08 65.8 3.9 30 744-773 6-35 (175)
215 3io5_A Recombination and repai 96.7 0.0041 1.4E-07 67.9 9.7 78 739-816 25-126 (333)
216 1vma_A Cell division protein F 96.7 0.021 7.3E-07 61.8 15.3 73 740-812 102-197 (306)
217 2i1q_A DNA repair and recombin 96.7 0.0071 2.4E-07 65.3 11.5 89 727-815 80-218 (322)
218 3iij_A Coilin-interacting nucl 96.7 0.00099 3.4E-08 65.4 4.2 33 742-774 11-43 (180)
219 2dr3_A UPF0273 protein PH0284; 96.7 0.0092 3.1E-07 60.8 11.6 37 740-776 21-60 (247)
220 1zuh_A Shikimate kinase; alpha 96.6 0.0011 3.8E-08 64.2 4.1 32 743-774 8-39 (168)
221 2iyv_A Shikimate kinase, SK; t 96.6 0.001 3.5E-08 65.4 3.8 31 744-774 4-34 (184)
222 3bh0_A DNAB-like replicative h 96.6 0.036 1.2E-06 60.0 15.9 36 740-775 66-104 (315)
223 1kag_A SKI, shikimate kinase I 96.6 0.0016 5.4E-08 63.2 4.7 30 743-772 5-34 (173)
224 2fz4_A DNA repair protein RAD2 96.5 0.0083 2.8E-07 62.2 10.2 33 744-776 110-142 (237)
225 1y63_A LMAJ004144AAA protein; 96.5 0.0013 4.4E-08 65.2 3.9 33 742-774 10-43 (184)
226 2rhm_A Putative kinase; P-loop 96.5 0.0017 5.9E-08 63.8 4.8 32 742-773 5-36 (193)
227 2cdn_A Adenylate kinase; phosp 96.5 0.0018 6.3E-08 64.7 4.8 32 742-773 20-51 (201)
228 2qen_A Walker-type ATPase; unk 96.5 0.0041 1.4E-07 66.6 7.7 110 162-277 128-247 (350)
229 2p5t_B PEZT; postsegregational 96.5 0.004 1.4E-07 65.1 7.4 39 740-778 30-68 (253)
230 1tev_A UMP-CMP kinase; ploop, 96.5 0.0017 5.8E-08 63.8 4.2 31 743-773 4-34 (196)
231 3crm_A TRNA delta(2)-isopenten 96.5 0.0026 9E-08 69.5 6.1 35 743-777 6-40 (323)
232 3lw7_A Adenylate kinase relate 96.5 0.0015 5.1E-08 62.5 3.7 29 744-773 3-31 (179)
233 3kl4_A SRP54, signal recogniti 96.4 0.01 3.5E-07 67.4 10.9 73 741-813 96-191 (433)
234 2c95_A Adenylate kinase 1; tra 96.4 0.0018 6E-08 64.0 4.2 32 742-773 9-40 (196)
235 1e6c_A Shikimate kinase; phosp 96.4 0.0017 5.9E-08 62.8 3.9 32 743-774 3-34 (173)
236 2r6a_A DNAB helicase, replicat 96.4 0.068 2.3E-06 60.7 17.6 36 740-775 201-240 (454)
237 2ze6_A Isopentenyl transferase 96.4 0.002 6.8E-08 67.6 4.5 32 744-775 3-34 (253)
238 1zp6_A Hypothetical protein AT 96.4 0.0016 5.5E-08 64.2 3.6 38 741-778 8-45 (191)
239 1gvn_B Zeta; postsegregational 96.4 0.0031 1.1E-07 67.5 6.0 38 741-778 32-69 (287)
240 3e1s_A Exodeoxyribonuclease V, 96.4 0.0028 9.5E-08 74.6 6.0 34 743-776 205-241 (574)
241 3cm0_A Adenylate kinase; ATP-b 96.4 0.0023 7.8E-08 62.8 4.5 31 743-773 5-35 (186)
242 1g5t_A COB(I)alamin adenosyltr 96.4 0.012 4E-07 59.9 9.8 102 743-859 29-163 (196)
243 1aky_A Adenylate kinase; ATP:A 96.4 0.0027 9.2E-08 64.5 5.1 32 742-773 4-35 (220)
244 2w58_A DNAI, primosome compone 96.4 0.0015 5.1E-08 65.2 3.1 23 76-107 55-77 (202)
245 3a4m_A L-seryl-tRNA(SEC) kinas 96.3 0.0072 2.5E-07 63.4 8.3 36 743-778 5-43 (260)
246 3jvv_A Twitching mobility prot 96.3 0.0043 1.5E-07 68.7 6.6 71 741-811 122-206 (356)
247 1nlf_A Regulatory protein REPA 96.3 0.0081 2.8E-07 63.5 8.5 26 741-766 29-54 (279)
248 2q6t_A DNAB replication FORK h 96.3 0.068 2.3E-06 60.5 16.6 36 740-775 198-237 (444)
249 3t61_A Gluconokinase; PSI-biol 96.3 0.0028 9.6E-08 63.4 4.6 33 742-774 18-50 (202)
250 2bwj_A Adenylate kinase 5; pho 96.3 0.0023 7.9E-08 63.3 3.9 31 743-773 13-43 (199)
251 1knq_A Gluconate kinase; ALFA/ 96.3 0.0036 1.2E-07 60.9 5.2 32 742-773 8-39 (175)
252 2vli_A Antibiotic resistance p 96.3 0.0022 7.7E-08 62.6 3.6 29 743-771 6-34 (183)
253 1kht_A Adenylate kinase; phosp 96.3 0.0022 7.6E-08 62.8 3.6 31 743-773 4-39 (192)
254 2pt5_A Shikimate kinase, SK; a 96.2 0.0026 8.7E-08 61.4 4.0 30 744-773 2-31 (168)
255 1qf9_A UMP/CMP kinase, protein 96.2 0.0025 8.5E-08 62.4 3.8 31 743-773 7-37 (194)
256 1ly1_A Polynucleotide kinase; 96.2 0.0023 7.7E-08 62.1 3.4 30 743-772 3-33 (181)
257 3dl0_A Adenylate kinase; phosp 96.2 0.0025 8.7E-08 64.3 3.9 30 744-773 2-31 (216)
258 3fb4_A Adenylate kinase; psych 96.2 0.0025 8.7E-08 64.2 3.9 30 744-773 2-31 (216)
259 4eun_A Thermoresistant glucoki 96.2 0.0039 1.3E-07 62.5 5.2 32 741-772 28-59 (200)
260 2zts_A Putative uncharacterize 96.2 0.029 1E-06 57.0 11.9 36 740-775 28-67 (251)
261 1ak2_A Adenylate kinase isoenz 96.2 0.0041 1.4E-07 64.0 5.2 31 743-773 17-47 (233)
262 3sfz_A APAF-1, apoptotic pepti 96.1 0.026 8.8E-07 70.8 13.4 54 702-765 117-170 (1249)
263 1zd8_A GTP:AMP phosphotransfer 96.1 0.0027 9.1E-08 64.9 3.7 31 743-773 8-38 (227)
264 3tlx_A Adenylate kinase 2; str 96.1 0.0034 1.2E-07 65.3 4.5 33 741-773 28-60 (243)
265 1ukz_A Uridylate kinase; trans 96.1 0.0034 1.2E-07 62.6 4.2 32 743-774 16-47 (203)
266 2pez_A Bifunctional 3'-phospho 96.1 0.0046 1.6E-07 60.6 4.9 38 741-778 4-44 (179)
267 3umf_A Adenylate kinase; rossm 96.1 0.0046 1.6E-07 63.8 5.0 32 741-772 28-59 (217)
268 2orw_A Thymidine kinase; TMTK, 96.1 0.0046 1.6E-07 61.9 4.8 31 743-773 4-37 (184)
269 2px0_A Flagellar biosynthesis 96.0 0.07 2.4E-06 57.4 14.4 91 681-776 48-143 (296)
270 3be4_A Adenylate kinase; malar 96.0 0.0032 1.1E-07 64.0 3.5 31 743-773 6-36 (217)
271 3sr0_A Adenylate kinase; phosp 96.0 0.0045 1.5E-07 63.3 4.5 29 744-772 2-30 (206)
272 2b8t_A Thymidine kinase; deoxy 96.0 0.0087 3E-07 62.0 6.7 72 741-813 11-101 (223)
273 2bbw_A Adenylate kinase 4, AK4 96.0 0.0046 1.6E-07 64.0 4.7 36 737-772 22-57 (246)
274 2eyu_A Twitching motility prot 96.0 0.0053 1.8E-07 64.9 5.1 70 741-811 24-108 (261)
275 2i3b_A HCR-ntpase, human cance 95.9 0.0074 2.5E-07 60.7 5.6 23 744-766 3-25 (189)
276 1zak_A Adenylate kinase; ATP:A 95.9 0.0041 1.4E-07 63.2 3.8 30 743-772 6-35 (222)
277 3b6e_A Interferon-induced heli 95.9 0.024 8.3E-07 56.2 9.4 24 743-766 49-72 (216)
278 1e4v_A Adenylate kinase; trans 95.9 0.0041 1.4E-07 62.9 3.7 30 744-773 2-31 (214)
279 1tue_A Replication protein E1; 95.9 0.0045 1.5E-07 63.6 3.9 27 70-107 55-81 (212)
280 2pbr_A DTMP kinase, thymidylat 95.9 0.0065 2.2E-07 59.6 5.0 31 744-774 2-35 (195)
281 3uie_A Adenylyl-sulfate kinase 95.9 0.0063 2.2E-07 60.9 5.0 39 740-778 23-64 (200)
282 2jaq_A Deoxyguanosine kinase; 95.9 0.0055 1.9E-07 60.6 4.4 29 744-772 2-30 (205)
283 1q57_A DNA primase/helicase; d 95.9 0.071 2.4E-06 61.2 14.3 36 740-775 240-279 (503)
284 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0035 1.2E-07 69.4 3.1 53 712-772 2-54 (359)
285 2yvu_A Probable adenylyl-sulfa 95.8 0.023 7.8E-07 55.9 8.6 38 741-778 12-52 (186)
286 1cke_A CK, MSSA, protein (cyti 95.8 0.007 2.4E-07 61.3 5.0 30 743-772 6-35 (227)
287 1nks_A Adenylate kinase; therm 95.8 0.0039 1.3E-07 61.0 2.8 34 744-777 3-39 (194)
288 2xb4_A Adenylate kinase; ATP-b 95.7 0.007 2.4E-07 61.9 4.6 30 744-773 2-31 (223)
289 3dzd_A Transcriptional regulat 95.7 0.003 1E-07 70.1 1.8 108 164-281 224-359 (368)
290 1cr0_A DNA primase/helicase; R 95.7 0.043 1.5E-06 58.2 10.8 35 740-774 33-71 (296)
291 2r8r_A Sensor protein; KDPD, P 95.7 0.013 4.5E-07 60.9 6.5 33 743-775 7-42 (228)
292 2z0h_A DTMP kinase, thymidylat 95.7 0.0089 3E-07 58.9 4.9 31 745-775 3-36 (197)
293 2if2_A Dephospho-COA kinase; a 95.6 0.0055 1.9E-07 61.2 3.3 30 744-774 3-32 (204)
294 2v54_A DTMP kinase, thymidylat 95.6 0.008 2.8E-07 59.6 4.4 33 742-774 4-37 (204)
295 2qgz_A Helicase loader, putati 95.5 0.0028 9.5E-08 68.6 0.8 24 75-107 152-175 (308)
296 1m7g_A Adenylylsulfate kinase; 95.5 0.021 7.2E-07 57.6 7.2 38 741-778 24-65 (211)
297 2ewv_A Twitching motility prot 95.5 0.014 4.6E-07 64.9 6.2 71 741-811 135-219 (372)
298 3nwj_A ATSK2; P loop, shikimat 95.5 0.01 3.4E-07 62.5 4.8 33 742-774 48-80 (250)
299 3bgw_A DNAB-like replicative h 95.5 0.26 9E-06 55.9 16.8 36 740-775 195-233 (444)
300 3ake_A Cytidylate kinase; CMP 95.5 0.01 3.4E-07 59.0 4.5 31 744-774 4-34 (208)
301 4gp7_A Metallophosphoesterase; 95.5 0.033 1.1E-06 54.5 8.2 20 742-761 9-28 (171)
302 2plr_A DTMP kinase, probable t 95.4 0.015 5E-07 57.9 5.5 30 743-772 5-36 (213)
303 1jr3_D DNA polymerase III, del 95.4 0.067 2.3E-06 58.0 11.2 75 742-839 18-103 (343)
304 1jjv_A Dephospho-COA kinase; P 95.4 0.0092 3.1E-07 59.7 3.9 29 744-773 4-32 (206)
305 3r20_A Cytidylate kinase; stru 95.3 0.013 4.4E-07 61.1 4.9 30 743-772 10-39 (233)
306 2gxq_A Heat resistant RNA depe 95.3 0.062 2.1E-06 53.1 9.7 19 743-761 39-57 (207)
307 1uf9_A TT1252 protein; P-loop, 95.2 0.01 3.6E-07 58.7 3.6 32 742-774 8-39 (203)
308 2wwf_A Thymidilate kinase, put 95.2 0.0057 2E-07 61.1 1.6 28 742-769 10-37 (212)
309 3zvl_A Bifunctional polynucleo 95.1 0.02 6.9E-07 64.4 6.1 33 740-772 256-288 (416)
310 2grj_A Dephospho-COA kinase; T 95.1 0.012 4.1E-07 59.3 3.8 32 743-774 13-44 (192)
311 3a8t_A Adenylate isopentenyltr 95.1 0.01 3.6E-07 65.2 3.5 35 742-776 40-74 (339)
312 4e22_A Cytidylate kinase; P-lo 95.1 0.018 6.2E-07 60.1 5.2 32 741-772 26-57 (252)
313 3vkg_A Dynein heavy chain, cyt 95.0 0.034 1.2E-06 76.2 8.8 64 743-813 605-668 (3245)
314 3llm_A ATP-dependent RNA helic 95.0 0.12 4.2E-06 52.8 11.2 21 743-763 77-97 (235)
315 1nn5_A Similar to deoxythymidy 95.0 0.0072 2.5E-07 60.4 1.7 26 742-767 9-34 (215)
316 1w36_D RECD, exodeoxyribonucle 94.9 0.036 1.2E-06 65.5 7.7 24 743-766 165-188 (608)
317 1q3t_A Cytidylate kinase; nucl 94.9 0.022 7.5E-07 58.6 5.2 33 741-773 15-47 (236)
318 2v3c_C SRP54, signal recogniti 94.9 0.13 4.3E-06 58.4 11.9 35 742-776 99-136 (432)
319 2ius_A DNA translocase FTSK; n 94.9 0.074 2.5E-06 61.6 10.1 77 161-243 295-374 (512)
320 2pt7_A CAG-ALFA; ATPase, prote 94.8 0.014 4.9E-07 63.7 3.7 70 743-812 172-251 (330)
321 2iut_A DNA translocase FTSK; n 94.8 0.079 2.7E-06 62.0 10.1 75 163-243 344-420 (574)
322 1uj2_A Uridine-cytidine kinase 94.7 0.027 9.3E-07 58.5 5.5 37 743-779 23-67 (252)
323 2h92_A Cytidylate kinase; ross 94.7 0.023 7.7E-07 57.3 4.6 31 743-773 4-34 (219)
324 2qor_A Guanylate kinase; phosp 94.7 0.017 5.8E-07 57.9 3.7 27 741-767 11-37 (204)
325 3foz_A TRNA delta(2)-isopenten 94.7 0.022 7.5E-07 61.9 4.7 35 742-776 10-44 (316)
326 1vht_A Dephospho-COA kinase; s 94.7 0.024 8.3E-07 57.2 4.8 30 743-773 5-34 (218)
327 1t6n_A Probable ATP-dependent 94.6 0.15 5.1E-06 51.1 10.5 24 743-766 52-75 (220)
328 2bdt_A BH3686; alpha-beta prot 94.6 0.021 7.1E-07 56.2 4.1 32 744-776 4-35 (189)
329 2a5y_B CED-4; apoptosis; HET: 94.6 0.11 3.7E-06 60.4 10.6 44 712-764 131-174 (549)
330 1x6v_B Bifunctional 3'-phospho 94.5 0.06 2E-06 63.8 8.0 38 741-778 51-91 (630)
331 1tf7_A KAIC; homohexamer, hexa 94.5 0.13 4.3E-06 59.6 10.7 36 741-776 38-77 (525)
332 1ltq_A Polynucleotide kinase; 94.4 0.022 7.6E-07 60.3 4.0 31 743-773 3-34 (301)
333 2qt1_A Nicotinamide riboside k 94.4 0.016 5.6E-07 58.0 2.7 33 742-774 21-54 (207)
334 1zu4_A FTSY; GTPase, signal re 94.4 0.19 6.4E-06 54.7 11.3 90 684-775 46-141 (320)
335 1rz3_A Hypothetical protein rb 94.4 0.082 2.8E-06 52.9 7.9 36 741-776 21-59 (201)
336 3c8u_A Fructokinase; YP_612366 94.4 0.041 1.4E-06 55.3 5.7 27 741-767 21-47 (208)
337 2f6r_A COA synthase, bifunctio 94.4 0.024 8.2E-07 60.3 4.1 31 742-773 75-105 (281)
338 2xau_A PRE-mRNA-splicing facto 94.3 0.13 4.5E-06 62.4 11.0 23 743-765 110-132 (773)
339 1u0j_A DNA replication protein 94.3 0.014 4.9E-07 62.0 2.2 24 75-107 104-127 (267)
340 3fdi_A Uncharacterized protein 94.3 0.026 9E-07 57.1 4.0 29 744-772 8-36 (201)
341 1qde_A EIF4A, translation init 94.3 0.21 7.2E-06 50.1 10.7 23 743-765 52-75 (224)
342 1w4r_A Thymidine kinase; type 94.3 0.059 2E-06 54.7 6.4 69 742-813 20-103 (195)
343 2j41_A Guanylate kinase; GMP, 94.3 0.028 9.5E-07 55.7 4.0 25 742-766 6-30 (207)
344 3d3q_A TRNA delta(2)-isopenten 94.2 0.025 8.6E-07 62.2 3.9 33 743-775 8-40 (340)
345 1kgd_A CASK, peripheral plasma 94.2 0.028 9.5E-07 55.3 3.9 26 742-767 5-30 (180)
346 1ex7_A Guanylate kinase; subst 94.2 0.034 1.2E-06 55.9 4.5 24 743-766 2-25 (186)
347 3tr0_A Guanylate kinase, GMP k 94.1 0.032 1.1E-06 55.3 4.2 24 743-766 8-31 (205)
348 3exa_A TRNA delta(2)-isopenten 94.1 0.03 1E-06 61.0 4.2 34 743-776 4-37 (322)
349 2yhs_A FTSY, cell division pro 94.1 0.41 1.4E-05 55.2 13.7 73 741-813 292-387 (503)
350 3tau_A Guanylate kinase, GMP k 94.1 0.027 9.2E-07 56.9 3.6 27 741-767 7-33 (208)
351 4a1f_A DNAB helicase, replicat 94.1 0.17 5.8E-06 55.5 10.1 36 740-775 44-82 (338)
352 1p9r_A General secretion pathw 94.1 0.13 4.4E-06 58.1 9.4 71 741-811 166-246 (418)
353 2axn_A 6-phosphofructo-2-kinas 94.0 0.083 2.8E-06 61.3 7.9 35 743-777 36-73 (520)
354 2qmh_A HPR kinase/phosphorylas 94.0 0.027 9.3E-07 57.5 3.3 34 741-775 33-66 (205)
355 1hv8_A Putative ATP-dependent 93.9 0.19 6.3E-06 53.7 9.9 33 743-775 45-82 (367)
356 3asz_A Uridine kinase; cytidin 93.8 0.035 1.2E-06 55.5 3.8 31 742-772 6-38 (211)
357 2pl3_A Probable ATP-dependent 93.8 0.2 7E-06 50.8 9.5 18 743-760 63-80 (236)
358 1vt4_I APAF-1 related killer D 93.8 0.17 5.8E-06 63.2 10.3 44 711-765 130-173 (1221)
359 3thx_B DNA mismatch repair pro 93.7 0.16 5.3E-06 62.9 9.8 24 742-765 673-696 (918)
360 3eph_A TRNA isopentenyltransfe 93.6 0.039 1.3E-06 62.0 4.1 34 742-775 2-35 (409)
361 3iuy_A Probable ATP-dependent 93.6 0.17 5.7E-06 51.2 8.4 19 743-761 58-76 (228)
362 1tf7_A KAIC; homohexamer, hexa 93.5 0.18 6.3E-06 58.2 9.7 93 741-837 280-403 (525)
363 2iut_A DNA translocase FTSK; n 93.5 0.43 1.5E-05 55.9 12.6 34 743-776 215-255 (574)
364 3thx_A DNA mismatch repair pro 93.4 0.24 8.3E-06 61.3 11.0 22 743-764 663-684 (934)
365 1lvg_A Guanylate kinase, GMP k 93.4 0.042 1.4E-06 55.1 3.5 25 742-766 4-28 (198)
366 2oap_1 GSPE-2, type II secreti 93.4 0.041 1.4E-06 63.7 3.8 69 743-811 261-343 (511)
367 3a00_A Guanylate kinase, GMP k 93.4 0.042 1.4E-06 54.3 3.4 24 743-766 2-25 (186)
368 1ls1_A Signal recognition part 93.4 0.17 5.9E-06 54.2 8.5 72 741-812 97-191 (295)
369 1vec_A ATP-dependent RNA helic 93.4 0.23 8E-06 49.0 8.9 19 743-761 41-59 (206)
370 3e70_C DPA, signal recognition 93.4 0.18 6E-06 55.1 8.6 27 740-766 127-153 (328)
371 2j37_W Signal recognition part 93.1 0.17 5.9E-06 58.4 8.5 35 741-775 100-137 (504)
372 4b3f_X DNA-binding protein smu 93.1 0.17 5.8E-06 60.0 8.7 49 713-775 190-241 (646)
373 1ye8_A Protein THEP1, hypothet 93.1 0.26 8.9E-06 48.7 8.7 17 91-107 7-23 (178)
374 2xxa_A Signal recognition part 93.0 0.21 7.3E-06 56.5 9.0 73 740-812 98-194 (433)
375 3hdt_A Putative kinase; struct 93.0 0.06 2.1E-06 55.6 4.0 30 743-772 15-44 (223)
376 3ney_A 55 kDa erythrocyte memb 93.0 0.071 2.4E-06 54.1 4.4 27 741-767 18-44 (197)
377 1j8m_F SRP54, signal recogniti 92.9 0.21 7E-06 53.7 8.1 72 742-813 98-192 (297)
378 1znw_A Guanylate kinase, GMP k 92.8 0.066 2.3E-06 53.8 3.9 26 741-766 19-44 (207)
379 4eaq_A DTMP kinase, thymidylat 92.6 0.088 3E-06 54.2 4.7 33 741-773 25-59 (229)
380 1rj9_A FTSY, signal recognitio 92.6 0.17 5.8E-06 54.6 7.1 26 741-766 101-126 (304)
381 3gmt_A Adenylate kinase; ssgci 92.6 0.082 2.8E-06 55.0 4.4 30 744-773 10-39 (230)
382 1xti_A Probable ATP-dependent 92.4 0.68 2.3E-05 50.0 11.6 23 743-765 46-68 (391)
383 1z6g_A Guanylate kinase; struc 92.4 0.073 2.5E-06 54.2 3.6 26 741-766 22-47 (218)
384 1wp9_A ATP-dependent RNA helic 92.3 0.45 1.5E-05 52.3 10.3 33 744-776 25-61 (494)
385 1gtv_A TMK, thymidylate kinase 92.3 0.032 1.1E-06 55.7 0.8 24 744-767 2-25 (214)
386 2qm8_A GTPase/ATPase; G protei 92.3 0.32 1.1E-05 53.1 8.8 25 742-766 55-79 (337)
387 2ehv_A Hypothetical protein PH 92.3 0.1 3.4E-06 53.1 4.5 68 160-232 133-207 (251)
388 1wb9_A DNA mismatch repair pro 92.2 0.66 2.3E-05 56.6 12.2 24 742-765 607-630 (800)
389 1odf_A YGR205W, hypothetical 3 92.2 0.19 6.6E-06 53.8 6.8 27 741-767 30-56 (290)
390 3b9q_A Chloroplast SRP recepto 92.2 0.21 7.2E-06 53.8 7.1 26 741-766 99-124 (302)
391 3p32_A Probable GTPase RV1496/ 92.2 0.36 1.2E-05 52.9 9.1 25 742-766 79-103 (355)
392 2j0s_A ATP-dependent RNA helic 92.1 0.42 1.4E-05 52.3 9.6 22 743-764 75-96 (410)
393 3pey_A ATP-dependent RNA helic 92.1 0.47 1.6E-05 51.1 9.9 22 742-763 44-65 (395)
394 1s2m_A Putative ATP-dependent 92.1 0.37 1.3E-05 52.4 9.2 22 743-764 59-80 (400)
395 1htw_A HI0065; nucleotide-bind 92.1 0.1 3.5E-06 50.9 4.0 26 741-766 32-57 (158)
396 3fe2_A Probable ATP-dependent 91.9 0.42 1.4E-05 48.8 8.8 19 743-761 67-85 (242)
397 3ber_A Probable ATP-dependent 91.8 0.53 1.8E-05 48.6 9.5 18 743-760 81-98 (249)
398 2ffh_A Protein (FFH); SRP54, s 91.8 0.5 1.7E-05 53.4 9.9 72 741-812 97-191 (425)
399 1s96_A Guanylate kinase, GMP k 91.7 0.11 3.7E-06 53.3 4.0 28 740-767 14-41 (219)
400 2va8_A SSO2462, SKI2-type heli 91.6 0.74 2.5E-05 54.9 11.8 34 742-775 46-83 (715)
401 2gza_A Type IV secretion syste 91.6 0.16 5.4E-06 56.1 5.4 72 741-812 174-263 (361)
402 3tbk_A RIG-I helicase domain; 91.6 1 3.5E-05 51.0 12.4 34 743-776 20-61 (555)
403 2jeo_A Uridine-cytidine kinase 91.5 0.13 4.4E-06 53.1 4.3 27 743-769 26-52 (245)
404 1bif_A 6-phosphofructo-2-kinas 91.5 0.32 1.1E-05 55.4 8.0 26 742-767 39-64 (469)
405 2v9p_A Replication protein E1; 91.5 0.12 4E-06 56.1 4.1 30 741-770 125-154 (305)
406 2cvh_A DNA repair and recombin 91.4 0.17 6E-06 50.3 5.1 16 91-106 27-42 (220)
407 2ius_A DNA translocase FTSK; n 91.3 0.73 2.5E-05 53.3 10.8 34 743-776 168-208 (512)
408 1ewq_A DNA mismatch repair pro 91.3 1 3.5E-05 54.6 12.5 23 743-765 577-599 (765)
409 1a7j_A Phosphoribulokinase; tr 91.3 0.091 3.1E-06 56.2 3.0 36 743-778 6-44 (290)
410 1m8p_A Sulfate adenylyltransfe 91.2 0.13 4.4E-06 60.4 4.4 38 741-778 395-436 (573)
411 3lnc_A Guanylate kinase, GMP k 91.1 0.083 2.9E-06 53.8 2.4 25 742-766 27-52 (231)
412 2fwr_A DNA repair protein RAD2 91.1 0.16 5.6E-06 57.1 5.0 34 743-776 109-142 (472)
413 1sky_E F1-ATPase, F1-ATP synth 91.1 0.14 4.7E-06 58.6 4.4 24 743-766 152-175 (473)
414 1c9k_A COBU, adenosylcobinamid 91.1 0.25 8.6E-06 49.4 5.8 32 745-777 2-33 (180)
415 2ged_A SR-beta, signal recogni 91.1 0.24 8.2E-06 48.1 5.6 26 741-766 47-72 (193)
416 2og2_A Putative signal recogni 90.9 0.32 1.1E-05 53.8 7.0 26 741-766 156-181 (359)
417 2i4i_A ATP-dependent RNA helic 90.9 0.76 2.6E-05 50.2 10.1 17 743-759 53-69 (417)
418 3dkp_A Probable ATP-dependent 90.9 0.87 3E-05 46.3 9.9 18 743-760 67-84 (245)
419 3fht_A ATP-dependent RNA helic 90.6 0.55 1.9E-05 51.0 8.5 19 742-760 64-82 (412)
420 3eiq_A Eukaryotic initiation f 90.5 0.6 2.1E-05 50.9 8.8 20 743-762 78-97 (414)
421 1sq5_A Pantothenate kinase; P- 90.5 0.16 5.5E-06 54.5 4.0 26 742-767 80-105 (308)
422 3tqf_A HPR(Ser) kinase; transf 90.4 0.2 6.7E-06 50.1 4.2 29 741-770 15-43 (181)
423 3aez_A Pantothenate kinase; tr 90.4 0.18 6.1E-06 54.6 4.3 26 741-766 89-114 (312)
424 1g8f_A Sulfate adenylyltransfe 90.4 0.18 6.3E-06 58.3 4.6 26 743-768 396-421 (511)
425 2v6i_A RNA helicase; membrane, 90.3 0.64 2.2E-05 52.2 8.9 33 743-775 3-39 (431)
426 2ocp_A DGK, deoxyguanosine kin 90.2 0.19 6.6E-06 51.5 4.2 25 743-767 3-27 (241)
427 2zj8_A DNA helicase, putative 90.2 1.3 4.3E-05 53.0 11.9 34 742-775 39-76 (720)
428 4a2p_A RIG-I, retinoic acid in 90.0 1.5 5E-05 49.8 11.7 34 743-776 23-64 (556)
429 1p5z_B DCK, deoxycytidine kina 89.8 0.09 3.1E-06 54.8 1.3 31 741-771 23-54 (263)
430 3ice_A Transcription terminati 89.8 0.52 1.8E-05 52.8 7.4 25 742-766 174-198 (422)
431 4edh_A DTMP kinase, thymidylat 89.6 0.3 1E-05 49.8 5.0 32 743-774 7-41 (213)
432 3cr8_A Sulfate adenylyltranfer 89.3 0.29 1E-05 57.1 5.3 37 742-778 369-409 (552)
433 1fuu_A Yeast initiation factor 89.3 0.65 2.2E-05 50.1 7.7 19 743-761 59-77 (394)
434 2gk6_A Regulator of nonsense t 89.2 0.34 1.2E-05 57.2 5.8 23 744-766 197-219 (624)
435 4a74_A DNA repair and recombin 89.2 0.51 1.8E-05 47.1 6.3 42 59-107 6-48 (231)
436 3ly5_A ATP-dependent RNA helic 89.1 0.93 3.2E-05 47.1 8.5 20 743-762 92-111 (262)
437 3tqc_A Pantothenate kinase; bi 89.1 0.26 8.9E-06 53.6 4.3 26 742-767 92-117 (321)
438 1jr3_D DNA polymerase III, del 89.1 1.4 4.8E-05 47.4 10.2 178 91-321 25-210 (343)
439 3tif_A Uncharacterized ABC tra 89.0 0.2 6.9E-06 51.8 3.2 26 741-766 30-55 (235)
440 3k53_A Ferrous iron transport 88.9 0.48 1.6E-05 49.5 6.1 23 743-765 4-26 (271)
441 2dyk_A GTP-binding protein; GT 88.9 0.25 8.6E-06 46.0 3.6 23 743-765 2-24 (161)
442 3b85_A Phosphate starvation-in 88.9 0.19 6.5E-06 51.1 2.8 23 743-765 23-45 (208)
443 2p67_A LAO/AO transport system 88.8 0.96 3.3E-05 49.2 8.7 26 741-766 55-80 (341)
444 2j9r_A Thymidine kinase; TK1, 88.8 0.69 2.4E-05 47.5 7.0 32 744-775 30-64 (214)
445 3v9p_A DTMP kinase, thymidylat 88.7 0.32 1.1E-05 50.3 4.5 24 743-766 26-49 (227)
446 3kta_A Chromosome segregation 88.7 0.23 7.9E-06 48.2 3.3 25 743-767 27-51 (182)
447 2f9l_A RAB11B, member RAS onco 88.7 0.23 7.9E-06 48.9 3.3 22 744-765 7-28 (199)
448 4f4c_A Multidrug resistance pr 88.7 1.2 4E-05 57.4 10.5 27 740-766 442-468 (1321)
449 3i5x_A ATP-dependent RNA helic 88.7 1.6 5.5E-05 50.1 10.8 19 742-760 111-129 (563)
450 2cbz_A Multidrug resistance-as 88.6 0.22 7.6E-06 51.6 3.2 26 741-766 30-55 (237)
451 2o8b_B DNA mismatch repair pro 88.3 1.7 5.9E-05 54.3 11.5 22 742-763 789-810 (1022)
452 1np6_A Molybdopterin-guanine d 88.3 0.28 9.7E-06 48.5 3.6 24 743-766 7-30 (174)
453 2pcj_A ABC transporter, lipopr 88.3 0.21 7.3E-06 51.2 2.8 26 741-766 29-54 (224)
454 1oix_A RAS-related protein RAB 88.2 0.23 8E-06 48.8 3.0 23 744-766 31-53 (191)
455 2v6x_A Vacuolar protein sortin 88.2 2.5 8.5E-05 36.7 9.2 67 441-508 10-76 (85)
456 4i1u_A Dephospho-COA kinase; s 88.2 0.31 1.1E-05 49.9 3.9 31 743-774 10-40 (210)
457 1b0u_A Histidine permease; ABC 88.2 0.25 8.5E-06 52.0 3.3 26 741-766 31-56 (262)
458 1xjc_A MOBB protein homolog; s 88.1 0.33 1.1E-05 48.0 3.9 24 743-766 5-28 (169)
459 3vkw_A Replicase large subunit 88.1 0.16 5.3E-06 57.8 1.8 24 741-764 160-183 (446)
460 2onk_A Molybdate/tungstate ABC 88.1 0.29 9.8E-06 50.9 3.6 24 743-766 25-48 (240)
461 3dmq_A RNA polymerase-associat 88.1 0.77 2.6E-05 57.1 8.1 42 742-783 170-216 (968)
462 2p6r_A Afuhel308 helicase; pro 88.0 0.59 2E-05 55.7 6.9 34 742-775 40-76 (702)
463 1nrj_B SR-beta, signal recogni 88.0 0.33 1.1E-05 48.3 3.9 25 742-766 12-36 (218)
464 3szr_A Interferon-induced GTP- 88.0 0.66 2.3E-05 54.7 7.1 23 744-766 47-69 (608)
465 3lv8_A DTMP kinase, thymidylat 88.0 0.3 1E-05 50.8 3.7 25 742-766 27-51 (236)
466 3fvq_A Fe(3+) IONS import ATP- 87.9 0.26 9E-06 54.5 3.4 26 741-766 29-54 (359)
467 1mv5_A LMRA, multidrug resista 87.8 0.27 9.3E-06 51.0 3.3 27 740-766 26-52 (243)
468 3lxw_A GTPase IMAP family memb 87.6 0.98 3.3E-05 46.7 7.4 24 742-765 21-44 (247)
469 1oyw_A RECQ helicase, ATP-depe 87.6 1.2 4.1E-05 51.4 8.9 33 743-775 41-73 (523)
470 1z2a_A RAS-related protein RAB 87.6 0.33 1.1E-05 45.5 3.5 23 743-765 6-28 (168)
471 3oiy_A Reverse gyrase helicase 87.6 0.64 2.2E-05 51.2 6.3 23 743-765 37-59 (414)
472 1lw7_A Transcriptional regulat 87.6 0.26 8.9E-06 54.1 3.2 27 743-769 171-197 (365)
473 1z6t_A APAF-1, apoptotic prote 87.6 0.66 2.3E-05 53.7 6.7 86 160-269 234-322 (591)
474 2zu0_C Probable ATP-dependent 87.6 0.33 1.1E-05 51.2 3.8 25 741-765 45-69 (267)
475 3tmk_A Thymidylate kinase; pho 87.6 0.49 1.7E-05 48.5 5.0 29 742-770 5-33 (216)
476 1kao_A RAP2A; GTP-binding prot 87.5 0.34 1.2E-05 45.1 3.5 23 743-765 4-26 (167)
477 2it1_A 362AA long hypothetical 87.4 0.33 1.1E-05 53.7 3.8 26 741-766 28-53 (362)
478 3rlf_A Maltose/maltodextrin im 87.4 0.33 1.1E-05 54.1 3.8 26 741-766 28-53 (381)
479 2yyz_A Sugar ABC transporter, 87.4 0.33 1.1E-05 53.7 3.7 26 741-766 28-53 (359)
480 3sop_A Neuronal-specific septi 87.3 0.3 1E-05 51.6 3.3 23 744-766 4-26 (270)
481 2ghi_A Transport protein; mult 87.3 0.3 1E-05 51.4 3.2 26 741-766 45-70 (260)
482 2zej_A Dardarin, leucine-rich 87.3 0.26 9E-06 47.8 2.7 21 744-764 4-24 (184)
483 2olj_A Amino acid ABC transpor 87.2 0.31 1.1E-05 51.5 3.3 26 741-766 49-74 (263)
484 1g6h_A High-affinity branched- 87.2 0.29 1E-05 51.2 3.1 26 741-766 32-57 (257)
485 2ixe_A Antigen peptide transpo 87.1 0.3 1E-05 51.6 3.2 26 741-766 44-69 (271)
486 2d2e_A SUFC protein; ABC-ATPas 87.1 0.34 1.2E-05 50.5 3.6 25 741-765 28-52 (250)
487 1wrb_A DJVLGB; RNA helicase, D 87.1 1.2 4.1E-05 45.6 7.7 18 743-760 61-78 (253)
488 2ce2_X GTPase HRAS; signaling 87.1 0.33 1.1E-05 45.1 3.1 23 744-766 5-27 (166)
489 1v43_A Sugar-binding transport 87.1 0.35 1.2E-05 53.7 3.8 26 741-766 36-61 (372)
490 1u8z_A RAS-related protein RAL 87.0 0.37 1.3E-05 44.9 3.5 23 743-765 5-27 (168)
491 1z47_A CYSA, putative ABC-tran 87.0 0.34 1.2E-05 53.5 3.6 25 742-766 41-65 (355)
492 1ek0_A Protein (GTP-binding pr 87.0 0.37 1.3E-05 45.1 3.5 24 743-766 4-27 (170)
493 2pze_A Cystic fibrosis transme 87.0 0.31 1.1E-05 50.1 3.1 26 741-766 33-58 (229)
494 2ff7_A Alpha-hemolysin translo 86.9 0.31 1.1E-05 50.8 3.1 26 741-766 34-59 (247)
495 2wji_A Ferrous iron transport 86.9 0.33 1.1E-05 46.2 3.1 22 743-764 4-25 (165)
496 2wjy_A Regulator of nonsense t 86.9 0.57 1.9E-05 57.1 5.8 23 744-766 373-395 (800)
497 2nzj_A GTP-binding protein REM 86.9 0.37 1.3E-05 45.6 3.4 22 743-764 5-26 (175)
498 2gks_A Bifunctional SAT/APS ki 86.8 0.45 1.5E-05 55.5 4.7 37 742-778 372-411 (546)
499 3l9o_A ATP-dependent RNA helic 86.8 0.96 3.3E-05 57.1 8.0 34 743-776 200-236 (1108)
500 3gfo_A Cobalt import ATP-bindi 86.7 0.32 1.1E-05 51.7 3.1 26 741-766 33-58 (275)
No 1
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=5.1e-61 Score=578.76 Aligned_cols=398 Identities=29% Similarity=0.461 Sum_probs=322.4
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
.||-+||.+|. +-+....|+||| |.||||||++|+++|+ .+|+.+.++.| .+.
T Consensus 221 ~~pl~~p~~f~~~g~~~p~GILL~---------GPPGTGKT~LAraiA~elg~~~~~v~~~~l--------------~sk 277 (806)
T 3cf2_A 221 ELPLRHPALFKAIGVKPPRGILLY---------GPPGTGKTLIARAVANETGAFFFLINGPEI--------------MSK 277 (806)
T ss_dssp HHHHHCCGGGTSCCCCCCCEEEEE---------CCTTSCHHHHHHHHHTTTTCEEEEEEHHHH--------------HSS
T ss_pred HHHccCHHHHhhcCCCCCCeEEEE---------CCCCCCHHHHHHHHHHHhCCeEEEEEhHHh--------------hcc
Confidence 46889999999 999999999999 9999999999999998 67777777777 778
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccC
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKG 211 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN 211 (863)
|+|+++.++|.+|..+ ....||||||||+|+|+.+|+. +..++++++||.+||++.... +|+||||||
T Consensus 278 ~~gese~~lr~lF~~A--------~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~-~V~VIaaTN 348 (806)
T 3cf2_A 278 LAGESESNLRKAFEEA--------EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA-HVIVMAATN 348 (806)
T ss_dssp CTTHHHHHHHHHHHHH--------TTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGG-CEEEEEECS
T ss_pred cchHHHHHHHHHHHHH--------HHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccC-CEEEEEecC
Confidence 8999999999999875 6788999999999999999954 556899999999999998765 899999999
Q ss_pred CCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhc
Q psy11009 212 IPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKII 289 (863)
Q Consensus 212 ~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~ 289 (863)
+|+.||+||+| |||+.|+|++||..+|.+||+.|++++++..++|+..||..|+||+||||+.+|++|++.|+++...
T Consensus 349 ~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~ 428 (806)
T 3cf2_A 349 RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD 428 (806)
T ss_dssp STTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999 9999999999999999999999999999999999999999999999999999999999999988520
Q ss_pred CCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccccccCCccccc
Q psy11009 290 GLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLIS 369 (863)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~ll~Gp~g~~~ 369 (863)
.+. . .+
T Consensus 429 -----------------------------~i~----~-----------------------------~~------------ 434 (806)
T 3cf2_A 429 -----------------------------LID----L-----------------------------ED------------ 434 (806)
T ss_dssp -----------------------------HGG----G-----------------------------TC------------
T ss_pred -----------------------------ccc----c-----------------------------cc------------
Confidence 000 0 00
Q ss_pred cccccccchHHHHHHHhhhhhhhhhhccCCcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchhHHHHHHHHH
Q psy11009 370 RDNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTT 449 (863)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~l~~i~e~~~ 449 (863)
.. + . .+..+
T Consensus 435 -----~~---------------------------------~---------------------------~---~e~~~--- 443 (806)
T 3cf2_A 435 -----ET---------------------------------I---------------------------D---AEVMN--- 443 (806)
T ss_dssp -----CC---------------------------------C---------------------------S---HHHHH---
T ss_pred -----cc---------------------------------c---------------------------c---hhhhc---
Confidence 00 0 0 00000
Q ss_pred HHHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCC
Q psy11009 450 IARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNS 529 (863)
Q Consensus 450 laRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~tl~~fk~~~~~~~~~~~~~ 529 (863)
. ..|.-. +...-+ +...
T Consensus 444 --------------------------~--~~v~~~----------------------Df~~Al---~~~~---------- 460 (806)
T 3cf2_A 444 --------------------------S--LAVTMD----------------------DFRWAL---SQSN---------- 460 (806)
T ss_dssp --------------------------H--CEECTT----------------------HHHHHH---SSSS----------
T ss_pred --------------------------c--ceeeHH----------------------HHHHHH---HhCC----------
Confidence 0 000000 000000 0000
Q ss_pred CCCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccccCCcCCCCCCCCCCCCCCccccCCCCCCC
Q psy11009 530 RPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPA 609 (863)
Q Consensus 530 ~~~~~~~~~ss~~~~~~~~~~~dpdvw~~p~~~d~~~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~ss~~r~~~~~~ 609 (863)
| .. .++
T Consensus 461 -p----------------------------s~-~r~-------------------------------------------- 466 (806)
T 3cf2_A 461 -P----------------------------SA-LRE-------------------------------------------- 466 (806)
T ss_dssp -C----------------------------CC-CCC--------------------------------------------
T ss_pred -C----------------------------cc-ccc--------------------------------------------
Confidence 0 00 000
Q ss_pred CCCCCCCCCCcccchhhhccCCCCchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccCCCCh
Q psy11009 610 NNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDN 689 (863)
Q Consensus 610 ~~~~~~~~~~~~~~~~~~~~~s~ds~~~~~~~~~~~~~~~s~~~n~~~~n~~~~~~~~~~~~~~~~~~~~~k~~~~g~d~ 689 (863)
T Consensus 467 -------------------------------------------------------------------------------- 466 (806)
T 3cf2_A 467 -------------------------------------------------------------------------------- 466 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCC
Q psy11009 690 DLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGT 768 (863)
Q Consensus 690 ~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~ 768 (863)
.....|+.+|++++|++++++.|.+.+.+|+.+|+.|...+ .+++|+|||||||||||++|+++|.+++.
T Consensus 467 ---------~~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~ 537 (806)
T 3cf2_A 467 ---------TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA 537 (806)
T ss_dssp ---------CCCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC
T ss_pred ---------ccccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC
Confidence 00123467899999999999999999999999999999877 78899999999999999999999999999
Q ss_pred cEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC--chhhHHHHHHHHHHHHHhcCCCCCCC
Q psy11009 769 TFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--SEHEASRRVKSELLVQMDGLSSAEDS 846 (863)
Q Consensus 769 ~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~--~~~e~~~rv~~~LL~~lD~l~~~~~~ 846 (863)
+|+.++++++.++|+|++++.++.+|..|+..+||||||||||+++++|+.. +++...++++++||.+||++...
T Consensus 538 ~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~--- 614 (806)
T 3cf2_A 538 NFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK--- 614 (806)
T ss_dssp EEEECCHHHHHTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSS---
T ss_pred ceEEeccchhhccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCC---
Confidence 9999999999999999999999999999999999999999999999998643 34567789999999999999654
Q ss_pred CCceEEEEecCCCCCCC
Q psy11009 847 SKVVMVLAATNFPWEGA 863 (863)
Q Consensus 847 ~~~VvVIaTTN~P~~ID 863 (863)
..|+||+|||+||.||
T Consensus 615 -~~V~vi~aTN~p~~lD 630 (806)
T 3cf2_A 615 -KNVFIIGATNRPDIID 630 (806)
T ss_dssp -SSEEEECC-CCSSSSC
T ss_pred -CCEEEEEeCCCchhCC
Confidence 3499999999999998
No 2
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=100.00 E-value=2e-48 Score=447.40 Aligned_cols=337 Identities=19% Similarity=0.262 Sum_probs=268.2
Q ss_pred CCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhhhhh
Q psy11009 63 KYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALTVGS 138 (863)
Q Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~ 138 (863)
+.|..|. +-.+...|+|+| |.||||||++|++++. ..|+++..+.+ .++++|.
T Consensus 36 ~~~~~~~~~g~~~p~gvLL~---------GppGtGKT~Laraia~~~~~~f~~is~~~~--------------~~~~~g~ 92 (476)
T 2ce7_A 36 KDPSKFNRIGARMPKGILLV---------GPPGTGKTLLARAVAGEANVPFFHISGSDF--------------VELFVGV 92 (476)
T ss_dssp HCTHHHHTTTCCCCSEEEEE---------CCTTSSHHHHHHHHHHHHTCCEEEEEGGGT--------------TTCCTTH
T ss_pred hChHHHhhcCCCCCCeEEEE---------CCCCCCHHHHHHHHHHHcCCCeeeCCHHHH--------------HHHHhcc
Confidence 3466665 555666789999 9999999999999998 44555555444 5678999
Q ss_pred HHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEccCC
Q psy11009 139 SLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI 212 (863)
Q Consensus 139 se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~ 212 (863)
.+.++|.+|.++ ....||||||||+|+++.+|.. ....+++++||..||++.... +|+||+|||+
T Consensus 93 ~~~~~r~lf~~A--------~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~-~viVIaaTn~ 163 (476)
T 2ce7_A 93 GAARVRDLFAQA--------KAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKE-GIIVMAATNR 163 (476)
T ss_dssp HHHHHHHHHHHH--------HHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGG-TEEEEEEESC
T ss_pred cHHHHHHHHHHH--------HhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCC-CEEEEEecCC
Confidence 999999999875 4467999999999999998853 344678999999999886544 8999999999
Q ss_pred CCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcC
Q psy11009 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG 290 (863)
Q Consensus 213 p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~ 290 (863)
|+.||+|++| |||+.|+|++||..+|.+||+.|+++.++..++++..||..|+||+|+||+++|++|++.|.++.
T Consensus 164 ~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~--- 240 (476)
T 2ce7_A 164 PDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG--- 240 (476)
T ss_dssp GGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC---
Confidence 9999999999 99999999999999999999999998888888999999999999999999999999999998875
Q ss_pred CChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccc-----cccC--
Q psy11009 291 LTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVT-----LATG-- 363 (863)
Q Consensus 291 ~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~-----ll~G-- 363 (863)
...|+.+||..|+.++.++..+........++..+++||+||++++|.+...+.. +..|
T Consensus 241 --------------~~~I~~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~G~a~~~~~l~~~~~~~~~~i~prg~~ 306 (476)
T 2ce7_A 241 --------------RDKITMKDFEEAIDRVIAGPARKSLLISPAEKRIIAYHEAGHAVVSTVVPNGEPVHRISIIPRGYK 306 (476)
T ss_dssp --------------CSSBCHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHHHHHHHHSTTCCCCCEEECC-----
T ss_pred --------------CCeecHHHHHHHHHHHhcCccccchhhhcchhhhhHHHHhhhHHHhhccCCccccceeeeecCccc
Confidence 4579999999999999887666555555668889999999999999999866533 2222
Q ss_pred Cccccc-----cccccccchHHHHHHHhhhhhhhhhhccC----CcccchhhhhhhhhhccccccccccchhhHHHHHHH
Q psy11009 364 PVGLIS-----RDNLKHKSPIKMNFLSLVLPLLAEEHGNN----GISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVE 434 (863)
Q Consensus 364 p~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 434 (863)
-.|.+. ++++.++.++..++..+++||+|||++++ ||+|||+++|.| |+.||++
T Consensus 307 alg~~~~~p~~~~~~~~~~~l~~~i~~~l~Gr~ae~~~~g~~~~ga~~Dl~~at~~-----------------a~~mv~~ 369 (476)
T 2ce7_A 307 ALGYTLHLPEEDKYLVSRNELLDKLTALLGGRAAEEVVFGDVTSGAANDIERATEI-----------------ARNMVCQ 369 (476)
T ss_dssp ------------CCSCBHHHHHHHHHHHTHHHHHHHHHHSSCCGGGHHHHHHHHHH-----------------HHHHHHT
T ss_pred ccceEEEcCcccccccCHHHHHHHHHHHHhHHHHHhhhcCCCCcccHHHHHHHHHH-----------------HHHHHHH
Confidence 223333 67889999999999999999999999987 999999999999 9999999
Q ss_pred hhcchhHHHHH-----HHHHHHHHhhhcCCCccchh
Q psy11009 435 KIMTDKYAEIA-----ESTTIARESSLTGNYDSACL 465 (863)
Q Consensus 435 ~~ms~~l~~i~-----e~~~laRe~a~~gnY~~~~~ 465 (863)
||||++++.+. +++++||++....+|++...
T Consensus 370 ~gm~~~~g~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 405 (476)
T 2ce7_A 370 LGMSEELGPLAWGKEEQEVFLGKEITRLRNYSEEVA 405 (476)
T ss_dssp SCCCTTTCSCCCCC-------------CCCSCHHHH
T ss_pred hCCCCcCCceeecCCCccccccccccccccccHHHH
Confidence 99999887764 57899999999999998864
No 3
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=100.00 E-value=1.1e-45 Score=426.79 Aligned_cols=334 Identities=19% Similarity=0.237 Sum_probs=279.7
Q ss_pred Cccccc-ccceeecceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhhH
Q psy11009 64 YPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGSS 139 (863)
Q Consensus 64 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~s 139 (863)
.|..|. +-.++..|+|+| |.||||||++|++++.. .|+++.+..+ .++++|..
T Consensus 52 ~~~~~~~lg~~ip~GvLL~---------GppGtGKTtLaraIa~~~~~~~i~i~g~~~--------------~~~~~g~~ 108 (499)
T 2dhr_A 52 NPSRFHEMGARIPKGVLLV---------GPPGVGKTHLARAVAGEARVPFITASGSDF--------------VEMFVGVG 108 (499)
T ss_dssp CGGGTTTTSCCCCSEEEEE---------CSSSSSHHHHHHHHHHHTTCCEEEEEGGGG--------------TSSCTTHH
T ss_pred chhhhhhccCCCCceEEEE---------CCCCCCHHHHHHHHHHHhCCCEEEEehhHH--------------HHhhhhhH
Confidence 455555 556667789999 99999999999999984 3444444443 55679999
Q ss_pred HHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEccCCC
Q psy11009 140 LNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIP 213 (863)
Q Consensus 140 e~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p 213 (863)
..+++.+|+.+ ....|||+||||+|+++..|.. ....+.++++|.+|++..... .++||||||+|
T Consensus 109 ~~~v~~lfq~a--------~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~-~viviAatn~p 179 (499)
T 2dhr_A 109 AARVRDLFETA--------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT-AIVVMAATNRP 179 (499)
T ss_dssp HHHHHHHTTTS--------SSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSC-CCEEEECCSCG
T ss_pred HHHHHHHHHHH--------HhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCc-cEEEEEecCCh
Confidence 99999999863 3457999999999999987753 234578899999999887544 79999999999
Q ss_pred CCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q psy11009 214 WDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGL 291 (863)
Q Consensus 214 ~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~ 291 (863)
+.||+|++| |||+.|+|++||..+|.+||+.|+++.++..++++..||..|+||+|+||+++|++|++.|.++.
T Consensus 180 ~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~~---- 255 (499)
T 2dhr_A 180 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG---- 255 (499)
T ss_dssp GGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTTC----
T ss_pred hhcCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC----
Confidence 999999999 99999999999999999999999998888889999999999999999999999999999988764
Q ss_pred ChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccc-----ccc-CCc
Q psy11009 292 TPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVT-----LAT-GPV 365 (863)
Q Consensus 292 ~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~-----ll~-Gp~ 365 (863)
...|+++||..|+.++.++..++.......++..++|||+||++++|++.+++.. ... +..
T Consensus 256 -------------~~~It~~dl~~al~~v~~~~~~~~~~~~~~e~~~~a~~e~g~av~~~~l~~~~~v~~~~i~pr~~~~ 322 (499)
T 2dhr_A 256 -------------RRKITMKDLEEAADRVMMLPAKKSLVLSPRDRRITAYHEAGHALAAHFLEHADGVHKVTIVPRGRAL 322 (499)
T ss_dssp -------------CSSCCSHHHHHHHHHHTTCSSSSCCCCCTTHHHHHHHHHHHHHHHHCCSSSCCCCCCEESCCSSCTT
T ss_pred -------------CCccCHHHHHHHHHHHhcccccccchhhHHHHhhhHHHHHHHHHHHhhcCCCCeeeEEEeecCCCcC
Confidence 3479999999999999988766655566677889999999999999999765532 111 223
Q ss_pred cccc----cccccccchHHHHHHHhhhhhhhhhhccC----CcccchhhhhhhhhhccccccccccchhhHHHHHHHhhc
Q psy11009 366 GLIS----RDNLKHKSPIKMNFLSLVLPLLAEEHGNN----GISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIM 437 (863)
Q Consensus 366 g~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m 437 (863)
|.+. +.++.++..+..+|..+++||.|||++++ ||+|||+++|.| |+.||++|||
T Consensus 323 g~~~p~q~~~~~~t~~~l~~~i~~~lgGr~ae~~~~g~~~~ga~~Dl~~at~~-----------------a~~mv~~~gm 385 (499)
T 2dhr_A 323 GFMMPRREDMLHWSRKRLLDQIAVALAGRAAEEIVFDDVTTGAENDFRQATEL-----------------ARRMITEWGM 385 (499)
T ss_dssp CSSHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHSCSCCBCCCHHHHHHHHH-----------------HHHHHTTSCC
T ss_pred cccccchhhhhccCHHHHHHHHHHHhhhHhHHHhhhcccCcccHHHHHHHHHH-----------------HHHHHHHhCC
Confidence 3332 56778999999999999999999999987 999999999999 9999999999
Q ss_pred chhHHHHH----HHHHHHHHhhhcCCCccchh
Q psy11009 438 TDKYAEIA----ESTTIARESSLTGNYDSACL 465 (863)
Q Consensus 438 s~~l~~i~----e~~~laRe~a~~gnY~~~~~ 465 (863)
|++++.+. +.+++| ++. ..+|++...
T Consensus 386 ~~~~g~~~~~~~~~~~~~-~~~-~~~~s~~~~ 415 (499)
T 2dhr_A 386 HPEFGPVAYAVREDTYLG-GYD-VRQYSEETA 415 (499)
T ss_dssp CSSSCSCCCCCCCCCSSC-CCC-CCCCCHHHH
T ss_pred CCCCCceeecCCCccccc-ccc-ccccCHHHH
Confidence 99888765 236777 666 678888764
No 4
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-45 Score=413.36 Aligned_cols=218 Identities=22% Similarity=0.355 Sum_probs=201.8
Q ss_pred hccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHH
Q psy11009 58 TFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLA 133 (863)
Q Consensus 58 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~ 133 (863)
..+|-+||++|. +-++.+.|+||| |+||||||++||++|+ .+|+++.++.| .+
T Consensus 164 v~~Pl~~pe~f~~~gi~~prGvLL~---------GPPGTGKTllAkAiA~e~~~~f~~v~~s~l--------------~s 220 (405)
T 4b4t_J 164 IELPVKHPELFESLGIAQPKGVILY---------GPPGTGKTLLARAVAHHTDCKFIRVSGAEL--------------VQ 220 (405)
T ss_dssp THHHHHCHHHHHHHTCCCCCCEEEE---------SCSSSSHHHHHHHHHHHHTCEEEEEEGGGG--------------SC
T ss_pred HHHHHhCHHHHHhCCCCCCCceEEe---------CCCCCCHHHHHHHHHHhhCCCceEEEhHHh--------------hc
Confidence 357899999999 888999999999 9999999999999998 89999999999 77
Q ss_pred hhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEE
Q psy11009 134 LTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYS 207 (863)
Q Consensus 134 ~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivI 207 (863)
+|||++++++|.+|..+ ...+||||||||+|+++.+|.. ....+++++||.+||++.... +|+||
T Consensus 221 k~vGese~~vr~lF~~A--------r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~V~vI 291 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMA--------REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSK-NIKII 291 (405)
T ss_dssp SSTTHHHHHHHHHHHHH--------HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCC-CEEEE
T ss_pred cccchHHHHHHHHHHHH--------HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCC-CeEEE
Confidence 88999999999999875 6778999999999999999843 234678999999999998765 89999
Q ss_pred EccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy11009 208 IQKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMR 285 (863)
Q Consensus 208 aATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air 285 (863)
||||+||.|||||+| |||++|+|++||.++|.+||+.|++++++..++|++.||..|+|||||||+++|++|++.|+|
T Consensus 292 aATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air 371 (405)
T 4b4t_J 292 MATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALR 371 (405)
T ss_dssp EEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred eccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCC
Q psy11009 286 RKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSV 324 (863)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psv 324 (863)
+. ...|+++||+.|+.++.+..
T Consensus 372 ~~-----------------~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 372 ER-----------------RIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp TT-----------------CSBCCHHHHHHHHHHHHHHH
T ss_pred cC-----------------CCCcCHHHHHHHHHHHhCcc
Confidence 86 55799999999999987653
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.7e-45 Score=408.69 Aligned_cols=224 Identities=21% Similarity=0.339 Sum_probs=206.7
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
.+|-+||.+|. +-++.+.|+||| |+||||||++|+++|. ++|+++.++.| +++
T Consensus 199 ~~Pl~~pe~f~~~Gi~~prGvLLy---------GPPGTGKTlLAkAiA~e~~~~fi~v~~s~l--------------~sk 255 (437)
T 4b4t_I 199 ELPLTHPELYEEMGIKPPKGVILY---------GAPGTGKTLLAKAVANQTSATFLRIVGSEL--------------IQK 255 (437)
T ss_dssp HHHHHCCHHHHHHTCCCCSEEEEE---------SSTTTTHHHHHHHHHHHHTCEEEEEESGGG--------------CCS
T ss_pred HHHHhCHHHHHhCCCCCCCCCceE---------CCCCchHHHHHHHHHHHhCCCEEEEEHHHh--------------hhc
Confidence 46889999999 888999999999 9999999999999998 89999999999 778
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
|||++++++|.+|..+ ...+||||||||+|+++.+|.. ....+++++||.+||++...+ +|+|||
T Consensus 256 ~vGesek~ir~lF~~A--------r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~-~ViVIa 326 (437)
T 4b4t_I 256 YLGDGPRLCRQIFKVA--------GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG-DVKVIM 326 (437)
T ss_dssp SSSHHHHHHHHHHHHH--------HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS-SEEEEE
T ss_pred cCchHHHHHHHHHHHH--------HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC-CEEEEE
Confidence 8999999999999875 6678999999999999999943 345788999999999998765 899999
Q ss_pred ccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
|||+||.|||||+| |||++|+|++||.++|.+||+.|++++++..++|++.||..|+|||||||+++|++|++.|+|+
T Consensus 327 ATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~ 406 (437)
T 4b4t_I 327 ATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRE 406 (437)
T ss_dssp EESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred eCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhh
Q psy11009 287 KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLEN 331 (863)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~ 331 (863)
. ...|+++||..|+.++.++..+++++.
T Consensus 407 ~-----------------~~~It~eDf~~Al~rv~~~~~~e~le~ 434 (437)
T 4b4t_I 407 R-----------------RMQVTAEDFKQAKERVMKNKVEENLEG 434 (437)
T ss_dssp T-----------------CSCBCHHHHHHHHHHHHHHHCCCSSSS
T ss_pred C-----------------CCccCHHHHHHHHHHHhCCCChhhHHh
Confidence 6 457999999999999999887776643
No 6
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.6e-44 Score=435.49 Aligned_cols=246 Identities=26% Similarity=0.357 Sum_probs=168.9
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
.+|-+||.+|. +.++.+.|+|+| |+||||||++||++|+ +||+++.+|.| +++
T Consensus 494 ~~p~~~p~~f~~~g~~~~~gvLl~---------GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l--------------~s~ 550 (806)
T 3cf2_A 494 QYPVEHPDKFLKFGMTPSKGVLFY---------GPPGCGKTLLAKAIANECQANFISIKGPEL--------------LTM 550 (806)
T ss_dssp TTTTTCSGGGSSSCCCCCSCCEEE---------SSTTSSHHHHHHHHHHTTTCEEEECCHHHH--------------HTT
T ss_pred HhhhhCHHHHHhcCCCCCceEEEe---------cCCCCCchHHHHHHHHHhCCceEEeccchh--------------hcc
Confidence 47889999998 899999999999 9999999999999998 89999999999 889
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
|||++|+++|.+|..+ ....||||||||+|+|+.+|+. +..++++|+||++||++.... +|+|||
T Consensus 551 ~vGese~~vr~lF~~A--------r~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~-~V~vi~ 621 (806)
T 3cf2_A 551 WFGESEANVREIFDKA--------RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK-NVFIIG 621 (806)
T ss_dssp TCSSCHHHHHHHHHHH--------HTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS-SEEEEC
T ss_pred ccchHHHHHHHHHHHH--------HHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC-CEEEEE
Confidence 9999999999999875 6778999999999999999942 456899999999999998765 899999
Q ss_pred ccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
|||+||.||+|++| |||++|||++||.++|.+||+.|+++.++..++|++.||+.|+|||||||+++|++|++.|+|+
T Consensus 622 aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~ 701 (806)
T 3cf2_A 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp C-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC----------------CHHHHHHHHHHHHHHH
T ss_pred eCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCChhhh--------ccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhccccc
Q psy11009 287 KIIGLTPEQI--------RQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVER 336 (863)
Q Consensus 287 ~~~~~~~~~~--------~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~ 336 (863)
.+........ .........++|+++||+.|+.+++||++++++++|+...
T Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~ 759 (806)
T 3cf2_A 702 SIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFA 759 (806)
T ss_dssp HHC-----------------------CCC----CCTTTC---------------CCCC
T ss_pred HHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 7643211110 0111222345799999999999999999999999997654
No 7
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.3e-43 Score=402.45 Aligned_cols=223 Identities=22% Similarity=0.304 Sum_probs=202.2
Q ss_pred hccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHH
Q psy11009 58 TFLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLA 133 (863)
Q Consensus 58 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~ 133 (863)
..+|-+||.+|. +-++.+.|+||| |+||||||++|+++|. ++|+++.++.| ++
T Consensus 197 v~~pl~~p~~f~~~g~~~prGvLL~---------GPPGtGKTllAkAiA~e~~~~~~~v~~s~l--------------~s 253 (437)
T 4b4t_L 197 IELPLKNPEIFQRVGIKPPKGVLLY---------GPPGTGKTLLAKAVAATIGANFIFSPASGI--------------VD 253 (437)
T ss_dssp HHHHHHCHHHHHHHCCCCCCEEEEE---------SCTTSSHHHHHHHHHHHHTCEEEEEEGGGT--------------CC
T ss_pred HHHHHhCHHHHHhCCCCCCCeEEEE---------CCCCCcHHHHHHHHHHHhCCCEEEEehhhh--------------cc
Confidence 347889999999 889999999999 9999999999999998 88999999988 77
Q ss_pred hhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEE
Q psy11009 134 LTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYS 207 (863)
Q Consensus 134 ~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivI 207 (863)
+|+|++++++|.+|..+ ....||||||||+|+++.+|.. ....+++++||++||++...+ +|+||
T Consensus 254 k~~Gese~~ir~~F~~A--------~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~vivI 324 (437)
T 4b4t_L 254 KYIGESARIIREMFAYA--------KEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG-QTKII 324 (437)
T ss_dssp SSSSHHHHHHHHHHHHH--------HHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT-SSEEE
T ss_pred ccchHHHHHHHHHHHHH--------HhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC-CeEEE
Confidence 88999999999999875 6678999999999999999943 335678899999999998765 89999
Q ss_pred EccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy11009 208 IQKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMR 285 (863)
Q Consensus 208 aATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air 285 (863)
||||+||.|||||+| |||++|+||+||.++|.+||+.|++++++..++|++.||..|+|||||||+++|++|++.|+|
T Consensus 325 ~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air 404 (437)
T 4b4t_L 325 MATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIRNCATEAGFFAIR 404 (437)
T ss_dssp EEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhh
Q psy11009 286 RKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDL 329 (863)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l 329 (863)
+. ...|+++||+.|++++.++...+..
T Consensus 405 ~~-----------------~~~i~~~d~~~Al~~v~~~~k~e~~ 431 (437)
T 4b4t_L 405 DD-----------------RDHINPDDLMKAVRKVAEVKKLEGT 431 (437)
T ss_dssp TT-----------------CSSBCHHHHHHHHHHHHHTCC----
T ss_pred cC-----------------CCCCCHHHHHHHHHHHHhccCcccc
Confidence 86 4579999999999999887554433
No 8
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-43 Score=402.65 Aligned_cols=219 Identities=21% Similarity=0.348 Sum_probs=202.2
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
.+|-+||.+|. +-++.+.|+||| |+||||||++|+++|. .+|+++.++.| .++
T Consensus 198 ~~pl~~pe~f~~~g~~~prGvLLy---------GPPGTGKTllAkAiA~e~~~~f~~v~~s~l--------------~~~ 254 (434)
T 4b4t_M 198 VLPMKRADKFKDMGIRAPKGALMY---------GPPGTGKTLLARACAAQTNATFLKLAAPQL--------------VQM 254 (434)
T ss_dssp HHHHHCSHHHHHHCCCCCCEEEEE---------SCTTSSHHHHHHHHHHHHTCEEEEEEGGGG--------------CSS
T ss_pred HHHHhCHHHHHhCCCCCCCeeEEE---------CcCCCCHHHHHHHHHHHhCCCEEEEehhhh--------------hhc
Confidence 57889999999 888899999999 9999999999999998 88999999999 778
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
|||++++++|.+|..+ ...+||||||||+|+|+.+|.. ....+++++||.+||++...+ +|+|||
T Consensus 255 ~vGese~~ir~lF~~A--------~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~-~ViVIa 325 (434)
T 4b4t_M 255 YIGEGAKLVRDAFALA--------KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD-RVKVLA 325 (434)
T ss_dssp CSSHHHHHHHHHHHHH--------HHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC-SSEEEE
T ss_pred ccchHHHHHHHHHHHH--------HhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC-CEEEEE
Confidence 8999999999999865 6678999999999999999944 234678899999999998765 899999
Q ss_pred ccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
|||+||.|||||+| |||++|+|++||.++|.+||+.|++++++..++|++.||+.|+|||||||+++|++|++.|+|+
T Consensus 326 aTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 326 ATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLKAVTVEAGMIALRN 405 (434)
T ss_dssp ECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred eCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCch
Q psy11009 287 KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAR 326 (863)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~ 326 (863)
. ...|+++||..|+.+++|+.++
T Consensus 406 ~-----------------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 406 G-----------------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp T-----------------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred C-----------------CCCcCHHHHHHHHHHHhCCCCc
Confidence 6 4589999999999999998654
No 9
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.6e-43 Score=395.39 Aligned_cols=218 Identities=18% Similarity=0.280 Sum_probs=201.0
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
.+|-+||++|. +-++.+.|+||| |+||||||++|+++|+ .+|+++.++.| .++
T Consensus 226 ~~pl~~pe~f~~~Gi~pprGILLy---------GPPGTGKTlLAkAiA~e~~~~fi~vs~s~L--------------~sk 282 (467)
T 4b4t_H 226 ELPLLSPERFATLGIDPPKGILLY---------GPPGTGKTLCARAVANRTDATFIRVIGSEL--------------VQK 282 (467)
T ss_dssp HHHHHCHHHHHHHTCCCCSEEEEC---------SCTTSSHHHHHHHHHHHHTCEEEEEEGGGG--------------CCC
T ss_pred HHHhcCHHHHHHCCCCCCCceEee---------CCCCCcHHHHHHHHHhccCCCeEEEEhHHh--------------hcc
Confidence 46889999999 999999999999 9999999999999998 88999999998 778
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
|||++++++|.+|..+ ...+||||||||+|+++.+|.. ....+++++||.+||++.... +|+|||
T Consensus 283 ~vGesek~ir~lF~~A--------r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~-~ViVIa 353 (467)
T 4b4t_H 283 YVGEGARMVRELFEMA--------RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRG-NIKVMF 353 (467)
T ss_dssp SSSHHHHHHHHHHHHH--------HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTT-TEEEEE
T ss_pred cCCHHHHHHHHHHHHH--------HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCC-cEEEEe
Confidence 8999999999999875 6778999999999999999944 234678899999999988765 899999
Q ss_pred ccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
|||+|+.||+||+| |||++|+|++||.++|.+||+.|++++++..++|++.||+.|+|||||||+++|++|++.|+|+
T Consensus 354 ATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~ 433 (467)
T 4b4t_H 354 ATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRA 433 (467)
T ss_dssp ECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHc
Confidence 99999999999999 9999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCc
Q psy11009 287 KIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVA 325 (863)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs 325 (863)
. ...|+++||+.|+.++.++..
T Consensus 434 ~-----------------~~~it~~Df~~Al~kV~~g~~ 455 (467)
T 4b4t_H 434 R-----------------RKVATEKDFLKAVDKVISGYK 455 (467)
T ss_dssp T-----------------CSSBCHHHHHHHHHHHHHHHC
T ss_pred C-----------------CCccCHHHHHHHHHHHhcCcc
Confidence 6 457999999999999976543
No 10
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-42 Score=392.39 Aligned_cols=224 Identities=18% Similarity=0.254 Sum_probs=203.2
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
.+|-+||.+|. +-+..+-|+||| |+||||||++|+++|+ ++|+++.++.+ .+.
T Consensus 189 ~~pl~~p~~~~~~g~~~prGiLL~---------GPPGtGKT~lakAiA~~~~~~~~~v~~~~l--------------~~~ 245 (428)
T 4b4t_K 189 ELPLVQADLYEQIGIDPPRGVLLY---------GPPGTGKTMLVKAVANSTKAAFIRVNGSEF--------------VHK 245 (428)
T ss_dssp HHHHHCHHHHHHHCCCCCCEEEEE---------SCTTTTHHHHHHHHHHHHTCEEEEEEGGGT--------------CCS
T ss_pred HHHHhCHHHHHhCCCCCCceEEEE---------CCCCCCHHHHHHHHHHHhCCCeEEEecchh--------------hcc
Confidence 46889999999 888999999999 9999999999999998 88999999988 778
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
|+|+++.++|.+|..+ ...+||||||||+|+++.+|.. ....+++++||++|||+.... +|+|||
T Consensus 246 ~~Ge~e~~ir~lF~~A--------~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~-~v~vI~ 316 (428)
T 4b4t_K 246 YLGEGPRMVRDVFRLA--------RENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST-NVKVIM 316 (428)
T ss_dssp SCSHHHHHHHHHHHHH--------HHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC-SEEEEE
T ss_pred ccchhHHHHHHHHHHH--------HHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC-CEEEEE
Confidence 8999999999999875 5678999999999999999833 345789999999999998765 899999
Q ss_pred ccCCCCCccHHHhh--ccceEEEec-CCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHH
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIP-LPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMR 285 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~-lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air 285 (863)
|||+||.|||||+| |||++|+|| +||.++|..||+.|++++++..++|++.||..|+|||||||+++|++|++.|+|
T Consensus 317 aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r 396 (428)
T 4b4t_K 317 ATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVR 396 (428)
T ss_dssp EESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred ecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999996 999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCChhhhccCCccccCCCCCHHHHHHHHHHh-cCCCchhhhhh
Q psy11009 286 RKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARC-NKSVAREDLEN 331 (863)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v-~psvs~~~l~~ 331 (863)
+. ...|+++||..|+.++ +++.+.+.++.
T Consensus 397 ~~-----------------~~~i~~~d~~~A~~~~~~~~~~~~~~d~ 426 (428)
T 4b4t_K 397 KN-----------------RYVILQSDLEEAYATQVKTDNTVDKFDF 426 (428)
T ss_dssp TT-----------------CSSBCHHHHHHHHHHHSCSCCCSSCCCS
T ss_pred CC-----------------CCCCCHHHHHHHHHHhhCccCCccHhhh
Confidence 86 4579999999999874 55555554443
No 11
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=100.00 E-value=1.4e-40 Score=405.24 Aligned_cols=397 Identities=30% Similarity=0.475 Sum_probs=312.7
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|-++|.+|. |-+....|+|+| |.||||||++|++++.. .|+.+.++.+ .+.+
T Consensus 222 ~~l~~~~~~~~l~i~~~~~vLL~---------Gp~GtGKTtLarala~~l~~~~i~v~~~~l--------------~~~~ 278 (806)
T 1ypw_A 222 LPLRHPALFKAIGVKPPRGILLY---------GPPGTGKTLIARAVANETGAFFFLINGPEI--------------MSKL 278 (806)
T ss_dssp HHHHCGGGGTSSCCCCCCEEEEC---------SCTTSSHHHHHHHHHHTTTCEEEEEEHHHH--------------SSSS
T ss_pred HHhhCHHHHHhcCCCCCCeEEEE---------CcCCCCHHHHHHHHHHHcCCcEEEEEchHh--------------hhhh
Confidence 5678999998 888888899999 99999999999999984 4555555444 5677
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccCC
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI 212 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~ 212 (863)
+|+++.+++.+|+.+ ....|||+||||+|.++..|.. ....+++++|+..|+++.... +|+||+|||+
T Consensus 279 ~g~~~~~l~~vf~~a--------~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~-~v~vI~atn~ 349 (806)
T 1ypw_A 279 AGESESNLRKAFEEA--------EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA-HVIVMAATNR 349 (806)
T ss_dssp TTHHHHHHHHHHHHH--------HHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTS-CCEEEEECSC
T ss_pred hhhHHHHHHHHHHHH--------HhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccc-cEEEecccCC
Confidence 999999999999864 4557999999999999988844 445788999999999987664 8999999999
Q ss_pred CCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcC
Q psy11009 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG 290 (863)
Q Consensus 213 p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~ 290 (863)
|+.||+++.| ||++.|+++.|+.++|.+||+.++.++.+..+.++..++..+.||+|+++..+|++|++.++++...
T Consensus 350 ~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~- 428 (806)
T 1ypw_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMD- 428 (806)
T ss_dssp TTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTT-
T ss_pred chhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhcc-
Confidence 9999999999 9999999999999999999999999998888899999999999999999999999998888776410
Q ss_pred CChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccceeeeccccceeeeecccCCccccccCCcccccc
Q psy11009 291 LTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLISR 370 (863)
Q Consensus 291 ~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~ll~Gp~g~~~~ 370 (863)
.+...+ .
T Consensus 429 ----------------~i~~~~--------------~------------------------------------------- 435 (806)
T 1ypw_A 429 ----------------LIDLED--------------E------------------------------------------- 435 (806)
T ss_dssp ----------------TTSCHH--------------H-------------------------------------------
T ss_pred ----------------ccchhh--------------h-------------------------------------------
Confidence 000000 0
Q ss_pred ccccccchHHHHHHHhhhhhhhhhhccCCcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchhHHHHHHHHHH
Q psy11009 371 DNLKHKSPIKMNFLSLVLPLLAEEHGNNGISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTI 450 (863)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~l~~i~e~~~l 450 (863)
.+ . .. .+ . .
T Consensus 436 ---------------~~----~-----------------------------------~~-~~-----~----~------- 444 (806)
T 1ypw_A 436 ---------------TI----D-----------------------------------AE-VM-----N----S------- 444 (806)
T ss_dssp ---------------HC----C-----------------------------------HH-HH-----T----T-------
T ss_pred ---------------cc----c-----------------------------------hh-hh-----h----h-------
Confidence 00 0 00 00 0 0
Q ss_pred HHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccccCCCC
Q psy11009 451 ARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNSR 530 (863)
Q Consensus 451 aRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~tl~~fk~~~~~~~~~~~~~~ 530 (863)
..+... .|.. . +. ...
T Consensus 445 ----------------------------~~v~~~-----d~~~---a--------------l~---~~~----------- 460 (806)
T 1ypw_A 445 ----------------------------LAVTMD-----DFRW---A--------------LS---QSN----------- 460 (806)
T ss_dssp ----------------------------CCCCTT-----HHHH---H--------------HH---HSC-----------
T ss_pred ----------------------------hhhhhh-----hhhc---c--------------cc---ccC-----------
Confidence 000000 0000 0 00 000
Q ss_pred CCCCCcccccCCCCCCCCCCCCCCCCCCCCCCCcccccccCCCCCCcccccCCcCCCCCCCCCCCCCCccccCCCCCCCC
Q psy11009 531 PNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPAN 610 (863)
Q Consensus 531 ~~~~~~~~ss~~~~~~~~~~~dpdvw~~p~~~d~~~y~~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~ss~~r~~~~~~~ 610 (863)
+ .. .+.
T Consensus 461 ~----------------------------s~-~~~--------------------------------------------- 466 (806)
T 1ypw_A 461 P----------------------------SA-LRE--------------------------------------------- 466 (806)
T ss_dssp C----------------------------CC-CCC---------------------------------------------
T ss_pred c----------------------------hh-hhh---------------------------------------------
Confidence 0 00 000
Q ss_pred CCCCCCCCCcccchhhhccCCCCchhccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCchhhhhhccccCCCChH
Q psy11009 611 NKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDND 690 (863)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~s~ds~~~~~~~~~~~~~~~s~~~n~~~~n~~~~~~~~~~~~~~~~~~~~~k~~~~g~d~~ 690 (863)
T Consensus 467 -------------------------------------------------------------------------------- 466 (806)
T 1ypw_A 467 -------------------------------------------------------------------------------- 466 (806)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCc
Q psy11009 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTT 769 (863)
Q Consensus 691 ~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~ 769 (863)
.....+..+|++++|++++++.|.+++.+|+.+++.+...+ .+++++||+||||||||++|+++|.+++.+
T Consensus 467 --------~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 467 --------TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp --------CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred --------hcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 00012346788999999999999999999999999988877 677899999999999999999999999999
Q ss_pred EEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCC
Q psy11009 770 FFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSS 847 (863)
Q Consensus 770 ~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~ 847 (863)
++.++++++.++|+|+.+..++.+|+.++...||||||||||.++..|+... ......+++++||..||++...
T Consensus 539 ~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~---- 614 (806)
T 1ypw_A 539 FISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK---- 614 (806)
T ss_dssp CCCCCCSSSTTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC---------
T ss_pred EEEEechHhhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccccc----
Confidence 9999999999999999999999999999999999999999999998886532 3457789999999999988543
Q ss_pred CceEEEEecCCCCCCC
Q psy11009 848 KVVMVLAATNFPWEGA 863 (863)
Q Consensus 848 ~~VvVIaTTN~P~~ID 863 (863)
..|+||+|||+|+.||
T Consensus 615 ~~v~vI~tTN~~~~ld 630 (806)
T 1ypw_A 615 KNVFIIGATNRPDIID 630 (806)
T ss_dssp -CCBCCCCCBSCGGGS
T ss_pred CCeEEEEecCCcccCC
Confidence 4589999999999887
No 12
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=3.3e-35 Score=322.25 Aligned_cols=245 Identities=26% Similarity=0.396 Sum_probs=205.8
Q ss_pred cccCCcccccccceeecceeEeeecccccccCcCCCccccccccccc----ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK----MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|-+||.+|.--.....|+|+| |.||||||++|+++++ .+|+++..+.+ ++.+
T Consensus 30 ~p~~~~~~~~~~~~~~~~iLL~---------GppGtGKT~la~ala~~~~~~~~~~i~~~~l--------------~~~~ 86 (322)
T 1xwi_A 30 LPIKFPHLFTGKRTPWRGILLF---------GPPGTGKSYLAKAVATEANNSTFFSISSSDL--------------VSKW 86 (322)
T ss_dssp HHHHCGGGSCTTCCCCSEEEEE---------SSSSSCHHHHHHHHHHHTTSCEEEEEECCSS--------------CCSS
T ss_pred HHHhCHHHHhCCCCCCceEEEE---------CCCCccHHHHHHHHHHHcCCCcEEEEEhHHH--------------Hhhh
Confidence 5889999998323445799999 9999999999999996 46888888877 5667
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccCC
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI 212 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~ 212 (863)
+|.++.+++.+|..+ ...+||||||||+|+++.+|.. ....+++++||.+|+++.....+|+||+|||+
T Consensus 87 ~g~~~~~~~~lf~~a--------~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~ 158 (322)
T 1xwi_A 87 LGESEKLVKNLFQLA--------RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNI 158 (322)
T ss_dssp CCSCHHHHHHHHHHH--------HHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESC
T ss_pred hhHHHHHHHHHHHHH--------HhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCC
Confidence 999999999999864 4567999999999999988854 55678999999999998765568999999999
Q ss_pred CCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q psy11009 213 PWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGL 291 (863)
Q Consensus 213 p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~ 291 (863)
|+.||+|++||||+.|+|++|+.++|.+||+.++++.+.. .+.+++.||+.|+||||+||+.+|++|++.++|+.....
T Consensus 159 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~ 238 (322)
T 1xwi_A 159 PWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSAT 238 (322)
T ss_dssp TTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCS
T ss_pred cccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999877654 678899999999999999999999999999999865321
Q ss_pred Chh-------------------------------hhccCCccc-cCCCCCHHHHHHHHHHhcCCCchhhhhhcccc
Q psy11009 292 TPE-------------------------------QIRQIPKEE-LDLPVSQRDFEEALARCNKSVAREDLENITVE 335 (863)
Q Consensus 292 ~~~-------------------------------~~~~~~~~~-~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~ 335 (863)
... .+..+..+. ..++|+++||..|+.+++|+++.+++..|+..
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~ 314 (322)
T 1xwi_A 239 HFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKF 314 (322)
T ss_dssp EEEEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHH
T ss_pred hhhhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 000 001112222 23589999999999999999999999988754
No 13
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=5.6e-34 Score=311.76 Aligned_cols=246 Identities=25% Similarity=0.364 Sum_probs=204.7
Q ss_pred ccccCCcccccccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 59 FLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
.+|.+||.+|.-..+...|+|+| |.||||||++|+++++ .+|+.+..+.| .+.+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~vLl~---------GppGtGKT~la~aia~~~~~~~~~v~~~~l--------------~~~~ 91 (322)
T 3eie_A 35 ILPVKFPHLFKGNRKPTSGILLY---------GPPGTGKSYLAKAVATEANSTFFSVSSSDL--------------VSKW 91 (322)
T ss_dssp HHHHHCGGGCCTTCCCCCEEEEE---------CSSSSCHHHHHHHHHHHHTCEEEEEEHHHH--------------HTTT
T ss_pred HHHHhCHHHHhcCCCCCCeEEEE---------CCCCCcHHHHHHHHHHHHCCCEEEEchHHH--------------hhcc
Confidence 35789999998656667899999 9999999999999998 45666655555 6778
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccCC
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI 212 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~ 212 (863)
+|.++.+++.+|..+ ....||||||||+|.++.+|.. ....+++++||.+|+++.....+|+||+|||+
T Consensus 92 ~g~~~~~~~~~f~~a--------~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~ 163 (322)
T 3eie_A 92 MGESEKLVKQLFAMA--------RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 163 (322)
T ss_dssp GGGHHHHHHHHHHHH--------HHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESC
T ss_pred cchHHHHHHHHHHHH--------HhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCC
Confidence 999999999999865 4568999999999999988844 56688999999999998766668999999999
Q ss_pred CCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q psy11009 213 PWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGL 291 (863)
Q Consensus 213 p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~ 291 (863)
|+.||+|++|||++.|+|++|+.++|.+||+.++++.+.. .+.+++.||..|+||||+||..+|++|++.++|+.....
T Consensus 164 ~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~ 243 (322)
T 3eie_A 164 PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 243 (322)
T ss_dssp GGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCE
T ss_pred hhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhh
Confidence 9999999999999999999999999999999999877655 678899999999999999999999999999999865321
Q ss_pred Chhh-------------------------hccCCccc-cCCCCCHHHHHHHHHHhcCCCchhhhhhcccc
Q psy11009 292 TPEQ-------------------------IRQIPKEE-LDLPVSQRDFEEALARCNKSVAREDLENITVE 335 (863)
Q Consensus 292 ~~~~-------------------------~~~~~~~~-~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~ 335 (863)
.... +..+..+. ...+||++||..|+..++|+++.+++.+|+..
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~ 313 (322)
T 3eie_A 244 HFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQF 313 (322)
T ss_dssp EEEECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHH
T ss_pred hhhhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 1100 11111111 23679999999999999999999999888653
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=9.8e-34 Score=304.09 Aligned_cols=233 Identities=28% Similarity=0.383 Sum_probs=186.3
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
.+|-++|.+|. +-+..+.|+|+| |.||||||+++++++. .+|+.+.++.+ .+.
T Consensus 27 ~~~~~~~~~l~~~~l~~~~GvlL~---------Gp~GtGKTtLakala~~~~~~~i~i~g~~l--------------~~~ 83 (274)
T 2x8a_A 27 LAPVRNPDQFKALGLVTPAGVLLA---------GPPGCGKTLLAKAVANESGLNFISVKGPEL--------------LNM 83 (274)
T ss_dssp THHHHSHHHHHHTTCCCCSEEEEE---------SSTTSCHHHHHHHHHHHTTCEEEEEETTTT--------------CSS
T ss_pred HHHhhCHHHHHHcCCCCCCeEEEE---------CCCCCcHHHHHHHHHHHcCCCEEEEEcHHH--------------Hhh
Confidence 35678888888 888888999999 9999999999999987 45677776666 566
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccC
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKG 211 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN 211 (863)
++|+++++++.+|+.+ ....|||+||||+|.++..|.. +...+++++++.+|++..... .++++|+||
T Consensus 84 ~~~~~~~~i~~vf~~a--------~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~-~~i~ia~tn 154 (274)
T 2x8a_A 84 YVGESERAVRQVFQRA--------KNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQ-QVFIMAATN 154 (274)
T ss_dssp TTHHHHHHHHHHHHHH--------HHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTT-CEEEEEEES
T ss_pred hhhHHHHHHHHHHHHH--------HhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccC-CEEEEeecC
Confidence 7999999999999863 3457999999999999877743 344678899999999886554 899999999
Q ss_pred CCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhcc---CCCCCcccHHHHhhhC--CCCCHHHHHHHHHHHHHHHH
Q psy11009 212 IPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKE---VKVDPAVDLTHIASQL--DGYSGADITNVCRDASMMSM 284 (863)
Q Consensus 212 ~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~---~~l~~dvdl~~LA~~T--eG~SGADI~~lv~~Aal~ai 284 (863)
+|+.||+|++| |||+.|+|++||.++|.+||+.++++ .++..++|++.||..| +|||||||+.+|++|++.|+
T Consensus 155 ~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~ 234 (274)
T 2x8a_A 155 RPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICAL 234 (274)
T ss_dssp CGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred ChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999953 4556789999999975 49999999999999999999
Q ss_pred HhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhh
Q psy11009 285 RRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDL 329 (863)
Q Consensus 285 r~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l 329 (863)
|+.+..... ........|+++||+.|+.+++|+++++++
T Consensus 235 ~~~~~~~~~------~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 235 RQEMARQKS------GNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp HHHC-----------------CCBCHHHHHHHHTTCCCCC-----
T ss_pred HHHHhhccc------cccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 986422110 011123479999999999999999998764
No 15
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.5e-33 Score=313.02 Aligned_cols=247 Identities=25% Similarity=0.360 Sum_probs=197.4
Q ss_pred ccccCCcccccccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 59 FLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
.+|-+||.+|.--.+...|+|+| |.||||||++|+++++ .+|+.+..+.| .+.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~iLL~---------GppGtGKT~la~ala~~~~~~~~~v~~~~l--------------~~~~ 124 (355)
T 2qp9_X 68 ILPVKFPHLFKGNRKPTSGILLY---------GPPGTGKSYLAKAVATEANSTFFSVSSSDL--------------VSKW 124 (355)
T ss_dssp HHHHHCGGGGCSSCCCCCCEEEE---------CSTTSCHHHHHHHHHHHHTCEEEEEEHHHH--------------HSCC
T ss_pred HHHHhCHHHHhcCCCCCceEEEE---------CCCCCcHHHHHHHHHHHhCCCEEEeeHHHH--------------hhhh
Confidence 35778999998545566799999 9999999999999998 45666666655 5667
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccCC
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI 212 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~ 212 (863)
+|.++..++.+|..+ ....||||||||+|.+...|.. ....+++++||.+|+++.....+|+||+|||+
T Consensus 125 ~g~~~~~~~~~f~~a--------~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~ 196 (355)
T 2qp9_X 125 MGESEKLVKQLFAMA--------RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNI 196 (355)
T ss_dssp ---CHHHHHHHHHHH--------HHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESC
T ss_pred cchHHHHHHHHHHHH--------HHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCC
Confidence 999999999999864 4467999999999999988744 55688999999999998765558999999999
Q ss_pred CCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q psy11009 213 PWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGL 291 (863)
Q Consensus 213 p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~ 291 (863)
|+.||+|++||||+.|+|++|+.++|.+||+.++.+.++. .+.+++.||..|+||||+||..+|++|++.|+++.....
T Consensus 197 ~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a~~~~~~~~ 276 (355)
T 2qp9_X 197 PWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSAT 276 (355)
T ss_dssp GGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999877654 578899999999999999999999999999999854221
Q ss_pred Chh-------------------------hhccCCccc-cCCCCCHHHHHHHHHHhcCCCchhhhhhccccc
Q psy11009 292 TPE-------------------------QIRQIPKEE-LDLPVSQRDFEEALARCNKSVAREDLENITVER 336 (863)
Q Consensus 292 ~~~-------------------------~~~~~~~~~-~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~ 336 (863)
... .+..+..+. ...+|+++||..||.+++|+++.+++..|+...
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~ 347 (355)
T 2qp9_X 277 HFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFT 347 (355)
T ss_dssp EEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHH
T ss_pred hhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 000 011111111 245799999999999999999999998887543
No 16
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.98 E-value=3.2e-33 Score=303.20 Aligned_cols=244 Identities=27% Similarity=0.377 Sum_probs=202.3
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|-+||.+|. +-+....|+|+| |.||||||++|+++++ .+|+++..+.| .+.+
T Consensus 33 ~~~~~~~~~~~~~~~~~~~vLL~---------Gp~GtGKT~la~ala~~~~~~~i~v~~~~l--------------~~~~ 89 (301)
T 3cf0_A 33 YPVEHPDKFLKFGMTPSKGVLFY---------GPPGCGKTLLAKAIANECQANFISIKGPEL--------------LTMW 89 (301)
T ss_dssp HHHHCHHHHHHHCCCCCSEEEEE---------CSSSSSHHHHHHHHHHHTTCEEEEECHHHH--------------HHHH
T ss_pred HHhhCHHHHHHcCCCCCceEEEE---------CCCCcCHHHHHHHHHHHhCCCEEEEEhHHH--------------Hhhh
Confidence 4668999998 777778899999 9999999999999998 55666665555 6788
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEc
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQ 209 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaA 209 (863)
+|.++.+++.+|..+ ....||||||||+|.++..|.. +...+++++||..|+++.... +|+||+|
T Consensus 90 ~g~~~~~~~~~f~~a--------~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~-~v~vi~a 160 (301)
T 3cf0_A 90 FGESEANVREIFDKA--------RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK-NVFIIGA 160 (301)
T ss_dssp HTTCTTHHHHHHHHH--------HHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTS-SEEEEEE
T ss_pred cCchHHHHHHHHHHH--------HhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCC-CEEEEEe
Confidence 999999999999864 3457999999999999987743 355789999999999887554 8999999
Q ss_pred cCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 210 KGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 210 TN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~ 287 (863)
||+|+.||+|++| ||++.|+|++|+..+|.+||+.++++.++..+++++.||..|.||||+||+++|++|++.|+++.
T Consensus 161 tn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 161 TNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240 (301)
T ss_dssp ESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999999999999999999998888888999999999999999999999999999999886
Q ss_pred hcCCCh-hhhc-------cCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccc
Q psy11009 288 IIGLTP-EQIR-------QIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVE 335 (863)
Q Consensus 288 ~~~~~~-~~~~-------~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~ 335 (863)
+..... .... ..........|+++||..|+.+++|+++.+++..|+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~ 296 (301)
T 3cf0_A 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMF 296 (301)
T ss_dssp HHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 421000 0000 00001122579999999999999999999999888654
No 17
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.98 E-value=3e-33 Score=319.67 Aligned_cols=247 Identities=26% Similarity=0.393 Sum_probs=197.7
Q ss_pred ccccCCcccccccceeecceeEeeecccccccCcCCCccccccccccc----ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK----MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
.+|-+||.+|.--.....|+|+| |.||||||++|+++++ .+|+++..+.| ++.
T Consensus 151 ~~p~~~~~~~~~~~~~~~~vLL~---------GppGtGKT~lA~aia~~~~~~~~~~v~~~~l--------------~~~ 207 (444)
T 2zan_A 151 ILPIKFPHLFTGKRTPWRGILLF---------GPPGTGKSYLAKAVATEANNSTFFSISSSDL--------------VSK 207 (444)
T ss_dssp THHHHCTTTTSGGGCCCSEEEEE---------CSTTSSHHHHHHHHHHHCCSSEEEEECCC-------------------
T ss_pred HHHhhCHHHhhccCCCCceEEEE---------CCCCCCHHHHHHHHHHHcCCCCEEEEeHHHH--------------Hhh
Confidence 35889999997323345799999 9999999999999997 45777777766 567
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccC
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKG 211 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN 211 (863)
++|.++.+++.+|..+ ....||||||||+|+++..|.. +...+++++||.+|+++.....+|+||+|||
T Consensus 208 ~~g~~~~~~~~~f~~a--------~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn 279 (444)
T 2zan_A 208 WLGESEKLVKNLFQLA--------RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATN 279 (444)
T ss_dssp ----CCCTHHHHHHHH--------HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEES
T ss_pred hcchHHHHHHHHHHHH--------HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCC
Confidence 8999999999999864 4567999999999999988844 5567899999999999876556899999999
Q ss_pred CCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcC
Q psy11009 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG 290 (863)
Q Consensus 212 ~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~ 290 (863)
+|+.||+|++||||+.|+|++|+.++|..||+.++.+.++. .+.+++.||..|+||||+||..+|++|++.++|+....
T Consensus 280 ~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~ 359 (444)
T 2zan_A 280 IPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSA 359 (444)
T ss_dssp CGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHC
T ss_pred CccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999877653 57889999999999999999999999999999986532
Q ss_pred CChh-------------------------------hhccCCccc-cCCCCCHHHHHHHHHHhcCCCchhhhhhccccc
Q psy11009 291 LTPE-------------------------------QIRQIPKEE-LDLPVSQRDFEEALARCNKSVAREDLENITVER 336 (863)
Q Consensus 291 ~~~~-------------------------------~~~~~~~~~-~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~ 336 (863)
.... .+..+..+. ..++||++||..||.+++|+++.+++..|+...
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~ 437 (444)
T 2zan_A 360 THFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFT 437 (444)
T ss_dssp SEEEEECCBCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHT
T ss_pred hhhhhhccccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 1000 000111111 235899999999999999999999999887543
No 18
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.1e-31 Score=300.99 Aligned_cols=161 Identities=42% Similarity=0.601 Sum_probs=148.5
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc
Q psy11009 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777 (863)
Q Consensus 699 ~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~ 777 (863)
...+.|.++|+||+|+++++++|.+.|.+|+.+|+.|...+ .|++|+|||||||||||++|+|+|++++.+|+.+++++
T Consensus 138 ~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 138 MVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp EEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred cccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 34667899999999999999999999999999999999887 78899999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q psy11009 778 LTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAA 855 (863)
Q Consensus 778 l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaT 855 (863)
+.++|+|++++.++.+|..|+..+||||||||||+++++|+.++ .+...++++++||.+||++... ..|+||+|
T Consensus 218 l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~----~~V~vIaA 293 (405)
T 4b4t_J 218 LVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETS----KNIKIIMA 293 (405)
T ss_dssp GSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCC----CCEEEEEE
T ss_pred hhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCC----CCeEEEec
Confidence 99999999999999999999999999999999999999886443 3456678999999999999654 34999999
Q ss_pred cCCCCCCC
Q psy11009 856 TNFPWEGA 863 (863)
Q Consensus 856 TN~P~~ID 863 (863)
||+||.||
T Consensus 294 TNrpd~LD 301 (405)
T 4b4t_J 294 TNRLDILD 301 (405)
T ss_dssp ESCSSSSC
T ss_pred cCChhhCC
Confidence 99999998
No 19
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=292.92 Aligned_cols=160 Identities=38% Similarity=0.591 Sum_probs=147.7
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
+++.|.++|+||+|+++++++|.+.|.+|+.+|++|...+ .+++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 173 ~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l 252 (437)
T 4b4t_I 173 MDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSEL 252 (437)
T ss_dssp EESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGG
T ss_pred eccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHh
Confidence 4678999999999999999999999999999999999888 778999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
.++|+|++++.++.+|..|+..+||||||||||+++.+|..++ .+....+++++||.+||++.... .|+||+||
T Consensus 253 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~----~ViVIaAT 328 (437)
T 4b4t_I 253 IQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG----DVKVIMAT 328 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS----SEEEEEEE
T ss_pred hhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC----CEEEEEeC
Confidence 9999999999999999999999999999999999999985443 23456788999999999986543 49999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
|+||.||
T Consensus 329 Nrpd~LD 335 (437)
T 4b4t_I 329 NKIETLD 335 (437)
T ss_dssp SCSTTCC
T ss_pred CChhhcC
Confidence 9999998
No 20
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-30 Score=293.03 Aligned_cols=160 Identities=41% Similarity=0.608 Sum_probs=147.5
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
+.+.|.++|+||+|+++++++|.+.|.+|+.+|+.|...+ .|++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 172 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l 251 (437)
T 4b4t_L 172 SFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGI 251 (437)
T ss_dssp EEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred eccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhh
Confidence 4567899999999999999999999999999999999887 788999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
.++|.|++++.++.+|..|+..+||||||||||+++++|...+ .+....+++++||.+||++.... .|+||+||
T Consensus 252 ~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~----~vivI~AT 327 (437)
T 4b4t_L 252 VDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG----QTKIIMAT 327 (437)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT----SSEEEEEE
T ss_pred ccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC----CeEEEEec
Confidence 9999999999999999999999999999999999999885433 24456788999999999986543 48999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
|+||.||
T Consensus 328 Nrp~~LD 334 (437)
T 4b4t_L 328 NRPDTLD 334 (437)
T ss_dssp SSTTSSC
T ss_pred CCchhhC
Confidence 9999998
No 21
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2.6e-30 Score=293.37 Aligned_cols=160 Identities=42% Similarity=0.589 Sum_probs=147.1
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
+++.|+.+|+||+|+++++++|.+.|.+|+.+|+.|...+ .+++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 172 ~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l 251 (434)
T 4b4t_M 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQL 251 (434)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred cCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhh
Confidence 4567899999999999999999999999999999999888 778999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCch--hhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESE--HEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~--~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
.++|+|++++.++.+|..|+..+||||||||||+++++|..+.. .....+++++||.+||++.... .|+|||||
T Consensus 252 ~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~----~ViVIaaT 327 (434)
T 4b4t_M 252 VQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD----RVKVLAAT 327 (434)
T ss_dssp CSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC----SSEEEEEC
T ss_pred hhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC----CEEEEEeC
Confidence 99999999999999999999999999999999999998865432 2345678999999999997643 49999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
|+||.||
T Consensus 328 Nrp~~LD 334 (434)
T 4b4t_M 328 NRVDVLD 334 (434)
T ss_dssp SSCCCCC
T ss_pred CCchhcC
Confidence 9999998
No 22
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.5e-30 Score=290.10 Aligned_cols=160 Identities=39% Similarity=0.607 Sum_probs=148.2
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
+++.|.++|+||+|+++++++|.+.|.+|+.+|+.|...+ .+++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 200 v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L 279 (467)
T 4b4t_H 200 VEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSEL 279 (467)
T ss_dssp EESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGG
T ss_pred ecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHh
Confidence 4678999999999999999999999999999999999888 889999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
.++|+|++++.++.+|..|+..+||||||||+|.++.+|+..+ ......+++++||.+||++... ..|+||+||
T Consensus 280 ~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~----~~ViVIaAT 355 (467)
T 4b4t_H 280 VQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPR----GNIKVMFAT 355 (467)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCT----TTEEEEEEC
T ss_pred hcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCC----CcEEEEeCC
Confidence 9999999999999999999999999999999999999886543 3455678899999999988654 349999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
|+|+.||
T Consensus 356 Nrpd~LD 362 (467)
T 4b4t_H 356 NRPNTLD 362 (467)
T ss_dssp SCTTSBC
T ss_pred CCcccCC
Confidence 9999998
No 23
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.4e-30 Score=290.42 Aligned_cols=160 Identities=40% Similarity=0.616 Sum_probs=147.6
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
+++.|.++|+||+|+++++++|.+.|.+|+.+|++|...| .+++|+|||||||||||++|+|+|++++.+|+.++++++
T Consensus 163 ~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l 242 (428)
T 4b4t_K 163 ENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEF 242 (428)
T ss_dssp EESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGT
T ss_pred CCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchh
Confidence 3567899999999999999999999999999999999887 788999999999999999999999999999999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
.++|+|++++.++.+|..|+..+||||||||+|+++.+|.... .+....+++++||.+||++.... .|+|||||
T Consensus 243 ~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~----~v~vI~aT 318 (428)
T 4b4t_K 243 VHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQST----NVKVIMAT 318 (428)
T ss_dssp CCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSC----SEEEEEEE
T ss_pred hccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCC----CEEEEEec
Confidence 9999999999999999999999999999999999999885432 34466889999999999997643 49999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
|+|+.||
T Consensus 319 N~~~~LD 325 (428)
T 4b4t_K 319 NRADTLD 325 (428)
T ss_dssp SCSSSCC
T ss_pred CChhhcC
Confidence 9999998
No 24
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.96 E-value=1.3e-31 Score=326.48 Aligned_cols=247 Identities=26% Similarity=0.353 Sum_probs=185.0
Q ss_pred ccccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHh
Q psy11009 59 FLTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLAL 134 (863)
Q Consensus 59 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~ 134 (863)
.+|-+||..|. +.+....|+|+| |.||||||++|+++++ .+|+.+.++.| .+.
T Consensus 494 ~~~~~~~~~~~~~~~~~~~~vLL~---------GppGtGKT~Lakala~~~~~~~i~v~~~~l--------------~~~ 550 (806)
T 1ypw_A 494 QYPVEHPDKFLKFGMTPSKGVLFY---------GPPGCGKTLLAKAIANECQANFISIKGPEL--------------LTM 550 (806)
T ss_dssp TSSSSSCTTTTCCCCCCCCCCCCB---------CCTTSSHHHHHHHHHHHHTCCCCCCCCSSS--------------TTC
T ss_pred HhhhhchHHHHhcCCCCCceeEEE---------CCCCCCHHHHHHHHHHHhCCCEEEEechHh--------------hhh
Confidence 45778999998 888888999999 9999999999999998 67888888777 567
Q ss_pred hhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEE
Q psy11009 135 TVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSI 208 (863)
Q Consensus 135 ~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIa 208 (863)
|+|+++.+++.+|..+ ....||||||||+|+++..|.. +...+++++||.+||++.... +|+||+
T Consensus 551 ~~g~~~~~i~~~f~~a--------~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~-~v~vI~ 621 (806)
T 1ypw_A 551 WFGESEANVREIFDKA--------RQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK-NVFIIG 621 (806)
T ss_dssp CTTTSSHHHHHHHHHH--------HHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-------CCBCCC
T ss_pred hcCccHHHHHHHHHHH--------HhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccC-CeEEEE
Confidence 8999999999999875 4456999999999999988843 356789999999999887655 899999
Q ss_pred ccCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHh
Q psy11009 209 QKGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRR 286 (863)
Q Consensus 209 ATN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~ 286 (863)
|||+|+.||+|++| |||+.|+|++|+.++|..||+.++++.++..+++++.||..|+||||+||+++|++|++.|+|+
T Consensus 622 tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~ 701 (806)
T 1ypw_A 622 ATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLTEICQRACKLAIRE 701 (806)
T ss_dssp CCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSC
T ss_pred ecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999988888999999999999999999999999999999998
Q ss_pred hhcCCChhhh--------ccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccccc
Q psy11009 287 KIIGLTPEQI--------RQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVERI 337 (863)
Q Consensus 287 ~~~~~~~~~~--------~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~~~ 337 (863)
.+........ ...........|+++||..|+..++|+++++++..|+....
T Consensus 702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~ 760 (806)
T 1ypw_A 702 SIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQ 760 (806)
T ss_dssp C------------------------CCTTTTTTSSCCCCCC------------------
T ss_pred HHHHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 6432100000 00011122347999999999999999999999999875543
No 25
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.95 E-value=3.9e-29 Score=288.77 Aligned_cols=238 Identities=24% Similarity=0.334 Sum_probs=198.1
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|.++|.+|. +......|+|+| |.||||||++|+++++ .+|+.+..+.+ .+.+
T Consensus 222 ~~l~~~~~~~~~g~~~~~~vLL~---------GppGtGKT~lAraia~~~~~~fv~vn~~~l--------------~~~~ 278 (489)
T 3hu3_A 222 LPLRHPALFKAIGVKPPRGILLY---------GPPGTGKTLIARAVANETGAFFFLINGPEI--------------MSKL 278 (489)
T ss_dssp HHHHCHHHHHHHTCCCCCEEEEE---------CSTTSSHHHHHHHHHHHCSSEEEEEEHHHH--------------HTSC
T ss_pred HHhhCHHHHHhcCCCCCCcEEEE---------CcCCCCHHHHHHHHHHHhCCCEEEEEchHh--------------hhhh
Confidence 4678999998 777788899999 9999999999999988 45555555555 5667
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCCCCCeEEEEccCC
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI 212 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~ 212 (863)
+|+++.+++.+|..+ ...+||||||||+|.++.+|.. ....++++.||..|+++.... +|+||+|||+
T Consensus 279 ~g~~~~~~~~~f~~A--------~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~-~v~vIaaTn~ 349 (489)
T 3hu3_A 279 AGESESNLRKAFEEA--------EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRA-HVIVMAATNR 349 (489)
T ss_dssp TTHHHHHHHHHHHHH--------HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTS-CEEEEEEESC
T ss_pred cchhHHHHHHHHHHH--------HhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCC-ceEEEEecCC
Confidence 999999999999864 5567999999999999998853 456789999999999887655 8999999999
Q ss_pred CCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcC
Q psy11009 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG 290 (863)
Q Consensus 213 p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~ 290 (863)
|+.||++++| ||++.|+|++|+..+|.+||+.+++++++..++++..+|..+.||+|+||..+|++|++.++++....
T Consensus 350 ~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~ 429 (489)
T 3hu3_A 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDL 429 (489)
T ss_dssp GGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTT
T ss_pred ccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999 99999999999999999999999999988888999999999999999999999999999999986533
Q ss_pred CChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhh
Q psy11009 291 LTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDL 329 (863)
Q Consensus 291 ~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l 329 (863)
+................|+++||..|+.+++|+..++-.
T Consensus 430 i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~ 468 (489)
T 3hu3_A 430 IDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRETV 468 (489)
T ss_dssp CCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGG
T ss_pred ccccccccchhhcccCcCCHHHHHHHHHhCCchhhhccc
Confidence 211110000001123479999999999999998655433
No 26
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=1.4e-28 Score=264.19 Aligned_cols=239 Identities=26% Similarity=0.359 Sum_probs=190.6
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|.+||.+|. +. ....|+|+| |.||||||++|+++++ .+|+.+..+.+ ...+
T Consensus 39 ~~~~~~~~~~~~~-~~~~~vll~---------Gp~GtGKT~la~~la~~~~~~~~~i~~~~l--------------~~~~ 94 (297)
T 3b9p_A 39 LPSVRPELFTGLR-APAKGLLLF---------GPPGNGKTLLARAVATECSATFLNISAASL--------------TSKY 94 (297)
T ss_dssp HHHHCGGGSCGGG-CCCSEEEEE---------SSSSSCHHHHHHHHHHHTTCEEEEEESTTT--------------SSSS
T ss_pred hhhhCHHHHhcCC-CCCCeEEEE---------CcCCCCHHHHHHHHHHHhCCCeEEeeHHHH--------------hhcc
Confidence 5678899987 32 335689999 9999999999999998 44566555555 4456
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCC--CCCeEEEEcc
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFP--STPVQYSIQK 210 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~--~~~VivIaAT 210 (863)
+|.++..++.+|..+ ....|+||||||+|.++..|.. ....++.+.||..+++.... ..+|+||+||
T Consensus 95 ~~~~~~~~~~~~~~~--------~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~t 166 (297)
T 3b9p_A 95 VGDGEKLVRALFAVA--------RHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAAT 166 (297)
T ss_dssp CSCHHHHHHHHHHHH--------HHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEE
T ss_pred cchHHHHHHHHHHHH--------HHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeec
Confidence 889999999999764 4567999999999999988754 44578889999999887653 2479999999
Q ss_pred CCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhc
Q psy11009 211 GIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKII 289 (863)
Q Consensus 211 N~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~ 289 (863)
|+|+.||++++|||+..+++++|+.++|..||+.++.+.... .+.++..||..|.||+|+||..+|+.|++.++|+...
T Consensus 167 n~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~ 246 (297)
T 3b9p_A 167 NRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNV 246 (297)
T ss_dssp SCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC-
T ss_pred CChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999766543 3567899999999999999999999999999987521
Q ss_pred CCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccc
Q psy11009 290 GLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVE 335 (863)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~ 335 (863)
.. .+.. .......|+.+||..|+.+++|+++++++..|++.
T Consensus 247 ~~----~~~~-~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~ 287 (297)
T 3b9p_A 247 EQ----VKCL-DISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKW 287 (297)
T ss_dssp ------------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHH
T ss_pred hh----cccc-cccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 10 0101 11123479999999999999999999988888643
No 27
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.95 E-value=4.7e-28 Score=255.28 Aligned_cols=212 Identities=23% Similarity=0.321 Sum_probs=177.3
Q ss_pred CCccccc-ccceeecceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhh
Q psy11009 63 KYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGS 138 (863)
Q Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~ 138 (863)
++|..|. +-.....|+|+| |.||||||++|+++++. .|+.+....+ .+.++|.
T Consensus 32 ~~~~~~~~~~~~~~~~vll~---------G~~GtGKT~la~~la~~~~~~~~~i~~~~~--------------~~~~~~~ 88 (257)
T 1lv7_A 32 REPSRFQKLGGKIPKGVLMV---------GPPGTGKTLLAKAIAGEAKVPFFTISGSDF--------------VEMFVGV 88 (257)
T ss_dssp HCGGGC-----CCCCEEEEE---------CCTTSCHHHHHHHHHHHHTCCEEEECSCSS--------------TTSCCCC
T ss_pred hCHHHHHHcCCCCCCeEEEE---------CcCCCCHHHHHHHHHHHcCCCEEEEeHHHH--------------HHHhhhh
Confidence 3555555 445556789999 99999999999999984 3444443333 4566888
Q ss_pred HHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEccCC
Q psy11009 139 SLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI 212 (863)
Q Consensus 139 se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~ 212 (863)
.+.+++.+|..+ ....|||+||||+|.++..|.. ....++++++|..|+++.... +++||+|||+
T Consensus 89 ~~~~~~~~~~~a--------~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~-~~~vI~~tn~ 159 (257)
T 1lv7_A 89 GASRVRDMFEQA--------KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE-GIIVIAATNR 159 (257)
T ss_dssp CHHHHHHHHHHH--------HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS-CEEEEEEESC
T ss_pred hHHHHHHHHHHH--------HHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC-CEEEEEeeCC
Confidence 999999999864 4567999999999999987743 233578899999999876544 8999999999
Q ss_pred CCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcC
Q psy11009 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG 290 (863)
Q Consensus 213 p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~ 290 (863)
|+.||++++| |||+.|+|++|+.++|.+||+.++++.++.+++++..+|..++|||++||+++|++|+..|.++.
T Consensus 160 ~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--- 236 (257)
T 1lv7_A 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--- 236 (257)
T ss_dssp TTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred chhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC---
Confidence 9999999999 99999999999999999999999998888888999999999999999999999999999998875
Q ss_pred CChhhhccCCccccCCCCCHHHHHHHHHHhcCC
Q psy11009 291 LTPEQIRQIPKEELDLPVSQRDFEEALARCNKS 323 (863)
Q Consensus 291 ~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ps 323 (863)
...|+.+||..|+.++..+
T Consensus 237 --------------~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 237 --------------KRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp --------------CSSBCHHHHHHHHHHHTTC
T ss_pred --------------CCcccHHHHHHHHHHHhcC
Confidence 4589999999999988755
No 28
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=3.2e-28 Score=270.26 Aligned_cols=240 Identities=27% Similarity=0.331 Sum_probs=189.6
Q ss_pred cccCCcccccccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhhh
Q psy11009 60 LTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALTV 136 (863)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~v 136 (863)
.|-++|.+|.--.....|+|+| |.||||||++|+++++ .+|+.+..+.+ .+.++
T Consensus 102 ~~~~~~~~~~~~~~~~~~vLl~---------GppGtGKT~la~aia~~~~~~~~~i~~~~l--------------~~~~~ 158 (357)
T 3d8b_A 102 WPMLRPDIFTGLRGPPKGILLF---------GPPGTGKTLIGKCIASQSGATFFSISASSL--------------TSKWV 158 (357)
T ss_dssp HHHHCTTTSCGGGSCCSEEEEE---------SSTTSSHHHHHHHHHHHTTCEEEEEEGGGG--------------CCSST
T ss_pred HHhhChHhHhhccCCCceEEEE---------CCCCCCHHHHHHHHHHHcCCeEEEEehHHh--------------hcccc
Confidence 3567888876223456689999 9999999999999998 44555555555 55678
Q ss_pred hhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCC-CCCCeEEEEccCC
Q psy11009 137 GSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTF-PSTPVQYSIQKGI 212 (863)
Q Consensus 137 g~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~-~~~~VivIaATN~ 212 (863)
|.++..++.+|..+ ....|+||||||+|.++..|.. ....+++++||..|++... ...+|+||+|||+
T Consensus 159 g~~~~~~~~~~~~a--------~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~ 230 (357)
T 3d8b_A 159 GEGEKMVRALFAVA--------RCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNR 230 (357)
T ss_dssp THHHHHHHHHHHHH--------HHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESC
T ss_pred chHHHHHHHHHHHH--------HhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCC
Confidence 99999999999764 4467999999999999988744 4567889999999988753 2448999999999
Q ss_pred CCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCC
Q psy11009 213 PWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGL 291 (863)
Q Consensus 213 p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~ 291 (863)
++.||++++|||+..+++++|+.++|.+||+.++....+. .+.+++.|+..++||||+||..+|++|++.++|+.....
T Consensus 231 ~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~ 310 (357)
T 3d8b_A 231 PQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTAD 310 (357)
T ss_dssp GGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC--
T ss_pred hhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999999765443 456789999999999999999999999999998642110
Q ss_pred ChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhcccc
Q psy11009 292 TPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITVE 335 (863)
Q Consensus 292 ~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~~ 335 (863)
...+ ......+|+++||..|+.+++|+++.++++.|...
T Consensus 311 ----~~~~-~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~ 349 (357)
T 3d8b_A 311 ----IATI-TPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENW 349 (357)
T ss_dssp -------------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHH
T ss_pred ----hccc-cccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 0011 11123589999999999999999999988888644
No 29
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.95 E-value=8.8e-28 Score=256.20 Aligned_cols=214 Identities=22% Similarity=0.330 Sum_probs=181.9
Q ss_pred cccCCccccc-ccceeecceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 60 LTSKYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
+|-++|.+|. +.+....|+|+| |.||||||++|+++++. +|+.+....+ ...+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~ll~---------G~~GtGKT~la~~la~~~~~~~~~v~~~~~--------------~~~~ 91 (285)
T 3h4m_A 35 LPLKHPELFEKVGIEPPKGILLY---------GPPGTGKTLLAKAVATETNATFIRVVGSEL--------------VKKF 91 (285)
T ss_dssp HHHHCHHHHHHHCCCCCSEEEEE---------SSSSSSHHHHHHHHHHHTTCEEEEEEGGGG--------------CCCS
T ss_pred HHhhCHHHHHhcCCCCCCeEEEE---------CCCCCcHHHHHHHHHHHhCCCEEEEehHHH--------------HHhc
Confidence 3457888887 767778899999 99999999999999983 4444444444 4556
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEc
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQ 209 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaA 209 (863)
+|..+..++.+|..+ ....||||||||+|.++.+|.. ....+.+..++..++++.... +++||+|
T Consensus 92 ~~~~~~~~~~~~~~~--------~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~-~~~vI~t 162 (285)
T 3h4m_A 92 IGEGASLVKDIFKLA--------KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG-DVKIIGA 162 (285)
T ss_dssp TTHHHHHHHHHHHHH--------HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS-SEEEEEE
T ss_pred cchHHHHHHHHHHHH--------HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC-CEEEEEe
Confidence 899999999999864 4567999999999999988743 233466677777777766544 8999999
Q ss_pred cCCCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 210 KGIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 210 TN~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~ 287 (863)
||.++.||++++| ||++.|+++.|+.++|.+||+.+++...+..+.++..|+..+.||+|+||+.+|+.|+..|+++.
T Consensus 163 tn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~ 242 (285)
T 3h4m_A 163 TNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242 (285)
T ss_dssp CSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999 99999999999999999999999998888888999999999999999999999999999999876
Q ss_pred hcCCChhhhccCCccccCCCCCHHHHHHHHHHhcC
Q psy11009 288 IIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNK 322 (863)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~p 322 (863)
...|+.+||..|+.++.+
T Consensus 243 -----------------~~~I~~~d~~~al~~~~~ 260 (285)
T 3h4m_A 243 -----------------RDYVTMDDFRKAVEKIME 260 (285)
T ss_dssp -----------------CSSBCHHHHHHHHHHHHH
T ss_pred -----------------cCcCCHHHHHHHHHHHHh
Confidence 457999999999998854
No 30
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.94 E-value=1e-27 Score=251.60 Aligned_cols=215 Identities=22% Similarity=0.315 Sum_probs=161.3
Q ss_pred CCccccc-ccceeecceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhh
Q psy11009 63 KYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGS 138 (863)
Q Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~ 138 (863)
++|..|. +.+....|+|+| |.||||||++|+++++. .|+.+....+ .+.+.|.
T Consensus 26 ~~~~~~~~~g~~~~~~vll~---------G~~GtGKT~la~~la~~~~~~~~~~~~~~~--------------~~~~~~~ 82 (262)
T 2qz4_A 26 KSPERFLQLGAKVPKGALLL---------GPPGCGKTLLAKAVATEAQVPFLAMAGAEF--------------VEVIGGL 82 (262)
T ss_dssp HCCC------CCCCCEEEEE---------SCTTSSHHHHHHHHHHHHTCCEEEEETTTT--------------SSSSTTH
T ss_pred HCHHHHHHcCCCCCceEEEE---------CCCCCCHHHHHHHHHHHhCCCEEEechHHH--------------HhhccCh
Confidence 5677776 777778899999 99999999999999984 3444444433 4566888
Q ss_pred HHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc-------chhHhHHHHHHHHhhccCCCCCCeEEEEccC
Q psy11009 139 SLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL-------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKG 211 (863)
Q Consensus 139 se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~-------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN 211 (863)
++..++.+|..+ ....||||||||+|.++.+|.. ....+.++.|+..+++..... +|+||+|||
T Consensus 83 ~~~~~~~~~~~a--------~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~-~~~vi~~tn 153 (262)
T 2qz4_A 83 GAARVRSLFKEA--------RARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTD-HVIVLASTN 153 (262)
T ss_dssp HHHHHHHHHHHH--------HHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTC-CEEEEEEES
T ss_pred hHHHHHHHHHHH--------HhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCC-CEEEEecCC
Confidence 899999999864 3456999999999999988743 334567889999998876544 899999999
Q ss_pred CCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcc--cHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 212 IPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAV--DLTHIASQLDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 212 ~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dv--dl~~LA~~TeG~SGADI~~lv~~Aal~air~~ 287 (863)
+++.||++++| |||+.++|++|+.++|.+||+.++.+..+..+. .+..|+..+.||+|+||.++|+.|+..|+++.
T Consensus 154 ~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~ 233 (262)
T 2qz4_A 154 RADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG 233 (262)
T ss_dssp CGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC-----
T ss_pred ChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 99999999999 999999999999999999999999877666433 35889999999999999999999999888765
Q ss_pred hcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCch
Q psy11009 288 IIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAR 326 (863)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~ 326 (863)
...|+.+||..|+.++.++..+
T Consensus 234 -----------------~~~i~~~d~~~a~~~~~~~~~~ 255 (262)
T 2qz4_A 234 -----------------HTSVHTLNFEYAVERVLAGTAK 255 (262)
T ss_dssp --------------------CCBCCHHHHHHHHHHHHHC
T ss_pred -----------------CCCCCHHHHHHHHHHhccChhh
Confidence 3479999999999998776443
No 31
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=1.3e-26 Score=243.75 Aligned_cols=207 Identities=20% Similarity=0.259 Sum_probs=170.0
Q ss_pred ccccc-ccceeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHH
Q psy11009 65 PSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLY 143 (863)
Q Consensus 65 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~ 143 (863)
|.+|. +-.....|+++| |.||||||+++++++.. +. .|...+.+....++++|....++
T Consensus 38 ~~~~~~~~~~~~~g~ll~---------G~~G~GKTtl~~~i~~~----~~-------~~~i~~~~~~~~~~~~~~~~~~i 97 (254)
T 1ixz_A 38 PSRFHEMGARIPKGVLLV---------GPPGVGKTHLARAVAGE----AR-------VPFITASGSDFVEMFVGVGAARV 97 (254)
T ss_dssp HHHHHHTTCCCCSEEEEE---------CCTTSSHHHHHHHHHHH----TT-------CCEEEEEHHHHHHSCTTHHHHHH
T ss_pred HHHHHHcCCCCCCeEEEE---------CCCCCCHHHHHHHHHHH----hC-------CCEEEeeHHHHHHHHhhHHHHHH
Confidence 33443 455566789999 99999999999999985 11 23334444445667788889999
Q ss_pred HHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCcc
Q psy11009 144 RSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDID 217 (863)
Q Consensus 144 r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD 217 (863)
+.+|+.+ ....||++||||+|.++..|.. ....+++++++.+|++..... .++++|+||+|+.||
T Consensus 98 ~~~~~~~--------~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~-~~i~~a~t~~p~~ld 168 (254)
T 1ixz_A 98 RDLFETA--------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT-AIVVMAATNRPDILD 168 (254)
T ss_dssp HHHHHHH--------TTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTC-CEEEEEEESCGGGSC
T ss_pred HHHHHHH--------HhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCC-CEEEEEccCCchhCC
Confidence 9999863 3457999999999999877742 334677899999998876543 789999999999999
Q ss_pred HHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhh
Q psy11009 218 EALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQ 295 (863)
Q Consensus 218 ~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~ 295 (863)
+|++| |||+.|+|++||.++|.+||+.++++.++..++++..||..|+||+|+||+++|++|+..|.++.
T Consensus 169 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~-------- 240 (254)
T 1ixz_A 169 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG-------- 240 (254)
T ss_dssp GGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--------
Confidence 99999 99999999999999999999999988888888999999999999999999999999999998864
Q ss_pred hccCCccccCCCCCHHHHHHHH
Q psy11009 296 IRQIPKEELDLPVSQRDFEEAL 317 (863)
Q Consensus 296 ~~~~~~~~~~~~Vt~~Df~~AL 317 (863)
...|+.+||.+|+
T Consensus 241 ---------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 ---------RRKITMKDLEEAA 253 (254)
T ss_dssp ---------CSSBCHHHHHHHT
T ss_pred ---------CCCcCHHHHHHHh
Confidence 3479999999885
No 32
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.94 E-value=1.5e-26 Score=259.38 Aligned_cols=240 Identities=25% Similarity=0.336 Sum_probs=182.9
Q ss_pred ccccCCcccccccceeecceeEeeecccccccCcCCCccccccccccc---ccchhcccchhhhccCcchhHHHHHHHhh
Q psy11009 59 FLTSKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MNFLSLVLPLLAEEHGKLKFKEAITLALT 135 (863)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~l~~~~gk~s~~e~~~~~~~ 135 (863)
.+|..+|.+|.-......|+|+| |.||||||++|+++++ .+|+.+....| .+.|
T Consensus 132 ~~~~~~~~~~~~~~~~~~~vLL~---------GppGtGKT~la~aia~~~~~~~~~v~~~~l--------------~~~~ 188 (389)
T 3vfd_A 132 ILPSLRPELFTGLRAPARGLLLF---------GPPGNGKTMLAKAVAAESNATFFNISAASL--------------TSKY 188 (389)
T ss_dssp HHHHHCTTTSCGGGCCCSEEEEE---------SSTTSCHHHHHHHHHHHTTCEEEEECSCCC------------------
T ss_pred HHhccCHHHhcccCCCCceEEEE---------CCCCCCHHHHHHHHHHhhcCcEEEeeHHHh--------------hccc
Confidence 34667888887222345789999 9999999999999998 44555555444 5567
Q ss_pred hhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc---chhHhHHHHHHHHhhccCCC-CCCeEEEEccC
Q psy11009 136 VGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---RGSKTFRTLCIHKYRLLTFP-STPVQYSIQKG 211 (863)
Q Consensus 136 vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~~~~~v~n~lL~~ld~~~~~-~~~VivIaATN 211 (863)
+|.++..++.+|..+ ...+|+||||||+|.++..|.. ....++.+.||..|++.... ..+|+||+|||
T Consensus 189 ~g~~~~~~~~~~~~a--------~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn 260 (389)
T 3vfd_A 189 VGEGEKLVRALFAVA--------RELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATN 260 (389)
T ss_dssp ---CHHHHHHHHHHH--------HHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEES
T ss_pred cchHHHHHHHHHHHH--------HhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecC
Confidence 999999999999864 4457899999999999988744 45688999999999887653 44799999999
Q ss_pred CCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcC
Q psy11009 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG 290 (863)
Q Consensus 212 ~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~ 290 (863)
+++.||++++|||+..|+|++|+.++|.+||+.++...... .+.++..|+..+.||+|++|..+|+.|+..++|+....
T Consensus 261 ~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~ 340 (389)
T 3vfd_A 261 RPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPE 340 (389)
T ss_dssp CGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC
T ss_pred CchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999765443 35578999999999999999999999999999974211
Q ss_pred CChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhccc
Q psy11009 291 LTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENITV 334 (863)
Q Consensus 291 ~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~~~ 334 (863)
...... ......|+.+||..++.+++|+++.+.++.|+.
T Consensus 341 ----~~~~~~-~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~ 379 (389)
T 3vfd_A 341 ----QVKNMS-ASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIR 379 (389)
T ss_dssp -------CCS-SSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHH
T ss_pred ----hhhccc-hhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 111111 112347999999999999999999888877753
No 33
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.93 E-value=4.3e-28 Score=256.58 Aligned_cols=217 Identities=22% Similarity=0.339 Sum_probs=175.5
Q ss_pred CCccccc-ccceeecceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhh
Q psy11009 63 KYPSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGS 138 (863)
Q Consensus 63 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~ 138 (863)
+||..|. +-.....|+|+| |.||||||++|+++++. .|+.+....+ .+.++|.
T Consensus 31 ~~~~~~~~~~~~~~~~vll~---------G~~GtGKT~la~~la~~~~~~~~~v~~~~~--------------~~~~~~~ 87 (268)
T 2r62_A 31 KYPERYANLGAKIPKGVLLV---------GPPGTGKTLLAKAVAGEAHVPFFSMGGSSF--------------IEMFVGL 87 (268)
T ss_dssp HCHHHHHHHSCCCCSCCCCB---------CSSCSSHHHHHHHHHHHHTCCCCCCCSCTT--------------TTSCSSS
T ss_pred HChHHHHHCCCCCCceEEEE---------CCCCCcHHHHHHHHHHHhCCCEEEechHHH--------------HHhhcch
Confidence 4777776 556667789999 99999999999999984 3333333333 4556788
Q ss_pred HHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc-------chhHhHHHHHHHHhhccCCCCCCeEEEEccC
Q psy11009 139 SLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL-------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKG 211 (863)
Q Consensus 139 se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~-------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN 211 (863)
++.+++.+|..+ ....|+||||||+|.+...|.. ....++++.||..|++......+|+||+|||
T Consensus 88 ~~~~~~~~~~~a--------~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn 159 (268)
T 2r62_A 88 GASRVRDLFETA--------KKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATN 159 (268)
T ss_dssp CSSSSSTTHHHH--------HHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBS
T ss_pred HHHHHHHHHHHH--------HhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecC
Confidence 877788888754 3347899999999999987732 2234567888888888776555799999999
Q ss_pred CCCCccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhc
Q psy11009 212 IPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKII 289 (863)
Q Consensus 212 ~p~~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~ 289 (863)
+++.||++++| ||+..|+|++|+.++|.+||+.++++.++..+++++.||..+.||+|+||.++|+.|++.|.++.
T Consensus 160 ~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~~-- 237 (268)
T 2r62_A 160 RPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLANIINEAALLAGRNN-- 237 (268)
T ss_dssp CCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSSC--
T ss_pred CchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 99999999999 99999999999999999999999998888888899999999999999999999999988776543
Q ss_pred CCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchh
Q psy11009 290 GLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVARE 327 (863)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~ 327 (863)
...|+.+||..|+.++.|+...+
T Consensus 238 ---------------~~~i~~~~~~~a~~~~~~~~~~~ 260 (268)
T 2r62_A 238 ---------------QKEVRQQHLKEAVERGIAGLEKK 260 (268)
T ss_dssp ---------------CCSCCHHHHHTSCTTCCCCCC--
T ss_pred ---------------cCCcCHHHHHHHHHHHhhcchhh
Confidence 34799999999999988875543
No 34
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.92 E-value=2.7e-25 Score=237.47 Aligned_cols=207 Identities=20% Similarity=0.259 Sum_probs=170.2
Q ss_pred ccccc-ccceeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHH
Q psy11009 65 PSVFL-LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLY 143 (863)
Q Consensus 65 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~ 143 (863)
|.+|. +-..+..|+++| |.||||||+++++++.. +. .|-+.+.+.....+++|....++
T Consensus 62 ~~~l~~~~~~~~~gvll~---------Gp~GtGKTtl~~~i~~~----~~-------~~~i~~~~~~~~~~~~~~~~~~i 121 (278)
T 1iy2_A 62 PSRFHEMGARIPKGVLLV---------GPPGVGKTHLARAVAGE----AR-------VPFITASGSDFVEMFVGVGAARV 121 (278)
T ss_dssp HHHHHHTTCCCCCEEEEE---------CCTTSSHHHHHHHHHHH----TT-------CCEEEEEHHHHHHSTTTHHHHHH
T ss_pred HHHHHHcCCCCCCeEEEE---------CCCcChHHHHHHHHHHH----cC-------CCEEEecHHHHHHHHhhHHHHHH
Confidence 34443 555666789999 99999999999999985 22 23344455555677788888999
Q ss_pred HHHhhcccceeeeccCCCCcEEEEEeccccccccccc------chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCcc
Q psy11009 144 RSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL------RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDID 217 (863)
Q Consensus 144 r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~------~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD 217 (863)
+.+|+.+ ....|||+||||+|.++..|.. ....+.+++++.+|++..... .++++++||+|+.||
T Consensus 122 ~~~~~~~--------~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~-~~i~~a~t~~p~~ld 192 (278)
T 1iy2_A 122 RDLFETA--------KRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT-AIVVMAATNRPDILD 192 (278)
T ss_dssp HHHHHHH--------HTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTC-CEEEEEEESCTTSSC
T ss_pred HHHHHHH--------HhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCC-CEEEEEecCCchhCC
Confidence 9999863 3457999999999999877642 234677889999998766443 689999999999999
Q ss_pred HHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhh
Q psy11009 218 EALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQ 295 (863)
Q Consensus 218 ~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~ 295 (863)
+|++| |||+.|+|++|+.++|.+||+.++++.++..++++..+|..++||+|+||+++|+.|+..|.++.
T Consensus 193 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~-------- 264 (278)
T 1iy2_A 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREG-------- 264 (278)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT--------
T ss_pred HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC--------
Confidence 99999 99999999999999999999999988888888999999999999999999999999999988764
Q ss_pred hccCCccccCCCCCHHHHHHHH
Q psy11009 296 IRQIPKEELDLPVSQRDFEEAL 317 (863)
Q Consensus 296 ~~~~~~~~~~~~Vt~~Df~~AL 317 (863)
...|+.+||.+|+
T Consensus 265 ---------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 ---------RRKITMKDLEEAA 277 (278)
T ss_dssp ---------CCSBCHHHHHHHT
T ss_pred ---------CCCcCHHHHHHHh
Confidence 3479999999885
No 35
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.5e-24 Score=237.59 Aligned_cols=160 Identities=56% Similarity=0.950 Sum_probs=146.4
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-CCcEEEEecccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-GTTFFNVCSSTL 778 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-~~~~i~vs~s~l 778 (863)
+.+.|+.+|+||+|++++++.|.+.+.+|+.+|+.|.+...|++++||+||||||||++|+++|+++ +.+|+.++++++
T Consensus 3 ~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l 82 (322)
T 1xwi_A 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDL 82 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSS
T ss_pred eecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHH
Confidence 4578999999999999999999999999999999998766788999999999999999999999999 899999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCC
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNF 858 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~ 858 (863)
.++|.|+.++.++.+|..++...|+||||||||.++++|+.. ..+...+++++||..||++... ...|+||+|||+
T Consensus 83 ~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~ld~~~~~---~~~v~vI~atn~ 158 (322)
T 1xwi_A 83 VSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD---NDGILVLGATNI 158 (322)
T ss_dssp CCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSC-CTTHHHHHHHHHHHHHHCSSSC---CTTEEEEEEESC
T ss_pred HhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccc-cchHHHHHHHHHHHHHhccccc---CCCEEEEEecCC
Confidence 999999999999999999999999999999999999887654 3567789999999999988532 345999999999
Q ss_pred CCCCC
Q psy11009 859 PWEGA 863 (863)
Q Consensus 859 P~~ID 863 (863)
|+.||
T Consensus 159 ~~~ld 163 (322)
T 1xwi_A 159 PWVLD 163 (322)
T ss_dssp TTTSC
T ss_pred cccCC
Confidence 99987
No 36
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.91 E-value=7.3e-25 Score=250.35 Aligned_cols=169 Identities=54% Similarity=0.918 Sum_probs=138.0
Q ss_pred HHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-CCc
Q psy11009 691 LVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-GTT 769 (863)
Q Consensus 691 ~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-~~~ 769 (863)
+.+.+...+..++|+.+|++|+|++++++.|.+.+.+|+.+|+.|.+...+++++||+||||||||++|+++|.++ +.+
T Consensus 116 ~~~~~~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~ 195 (444)
T 2zan_A 116 LQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNST 195 (444)
T ss_dssp --------CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSE
T ss_pred HHHHhhcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 3445566778889999999999999999999999999999999998766788999999999999999999999999 899
Q ss_pred EEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q psy11009 770 FFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKV 849 (863)
Q Consensus 770 ~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~ 849 (863)
|+.++++++.+.|.|+.+..++.+|..++...|+||||||||.+++.|+.. ..+..++++++||..|+++... ...
T Consensus 196 ~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~---~~~ 271 (444)
T 2zan_A 196 FFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSEN-ESEAARRIKTEFLVQMQGVGVD---NDG 271 (444)
T ss_dssp EEEECCC---------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCC-CCGGGHHHHHHHHTTTTCSSCC---CSS
T ss_pred EEEEeHHHHHhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCc-cccHHHHHHHHHHHHHhCcccC---CCC
Confidence 999999999999999999999999999999999999999999999887654 3567789999999999987532 345
Q ss_pred eEEEEecCCCCCCC
Q psy11009 850 VMVLAATNFPWEGA 863 (863)
Q Consensus 850 VvVIaTTN~P~~ID 863 (863)
|+||+|||+|+.||
T Consensus 272 v~vI~atn~~~~ld 285 (444)
T 2zan_A 272 ILVLGATNIPWVLD 285 (444)
T ss_dssp CEEEEEESCGGGSC
T ss_pred EEEEecCCCccccC
Confidence 99999999999886
No 37
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.91 E-value=2.8e-24 Score=234.95 Aligned_cols=162 Identities=56% Similarity=0.920 Sum_probs=145.5
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~ 777 (863)
.|+.++|+.+|++|+|++++++.|.+++.+|+.+|+.+.....+++++||+||||||||++|+++|++++.+|+.+++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 46788999999999999999999999999999999999887788899999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecC
Q psy11009 778 LTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857 (863)
Q Consensus 778 l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN 857 (863)
+.++|.|+.+..++.+|..++...|+||||||||.++++++.. ..+..++++++|+..|+++... ...|+||+|||
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~---~~~v~vi~atn 162 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGND---SQGVLVLGATN 162 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTS---CCCEEEEEEES
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCC-cchHHHHHHHHHHHHhcccccc---CCceEEEEecC
Confidence 9999999999999999999999999999999999999877543 3566788999999999988532 34599999999
Q ss_pred CCCCCC
Q psy11009 858 FPWEGA 863 (863)
Q Consensus 858 ~P~~ID 863 (863)
+|+.||
T Consensus 163 ~~~~ld 168 (322)
T 3eie_A 163 IPWQLD 168 (322)
T ss_dssp CGGGSC
T ss_pred ChhhCC
Confidence 999887
No 38
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.90 E-value=3.6e-24 Score=237.67 Aligned_cols=170 Identities=55% Similarity=0.887 Sum_probs=135.1
Q ss_pred HHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc
Q psy11009 690 DLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT 769 (863)
Q Consensus 690 ~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~ 769 (863)
.+.+.+...+..++|+.+|++|+|++++++.|.+.+.+|+.+|+.|.....+++++||+||||||||++|+++|++++.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~ 111 (355)
T 2qp9_X 32 KLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANST 111 (355)
T ss_dssp ---------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred HHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 34555667788899999999999999999999999999999999999877888999999999999999999999999999
Q ss_pred EEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q psy11009 770 FFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKV 849 (863)
Q Consensus 770 ~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~ 849 (863)
|+.++++++...|.|+.+..++.+|..++...|+||||||||.+.+.|+.. .++..++++++||..|+++... ...
T Consensus 112 ~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~-~~~~~~~~~~~ll~~l~~~~~~---~~~ 187 (355)
T 2qp9_X 112 FFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEG-ESEASRRIKTELLVQMNGVGND---SQG 187 (355)
T ss_dssp EEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC------CC
T ss_pred EEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCC-cchHHHHHHHHHHHHhhccccc---CCC
Confidence 999999999999999999999999999999999999999999999877543 4567789999999999987542 345
Q ss_pred eEEEEecCCCCCCC
Q psy11009 850 VMVLAATNFPWEGA 863 (863)
Q Consensus 850 VvVIaTTN~P~~ID 863 (863)
|+||+|||+|+.||
T Consensus 188 v~vI~atn~~~~ld 201 (355)
T 2qp9_X 188 VLVLGATNIPWQLD 201 (355)
T ss_dssp EEEEEEESCGGGSC
T ss_pred eEEEeecCCcccCC
Confidence 99999999999886
No 39
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.90 E-value=3.5e-25 Score=239.56 Aligned_cols=170 Identities=13% Similarity=0.047 Sum_probs=127.0
Q ss_pred eeecceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhc
Q psy11009 73 AIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNR 149 (863)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~ 149 (863)
+...|+|+| |.||||||++|+++++. +|+.+....| .+.|+|.++.+++.+|..
T Consensus 34 ~~p~~lLl~---------GppGtGKT~la~aiA~~l~~~~i~v~~~~l--------------~~~~~g~~~~~i~~~f~~ 90 (293)
T 3t15_A 34 KVPLILGIW---------GGKGQGKSFQCELVFRKMGINPIMMSAGEL--------------ESGNAGEPAKLIRQRYRE 90 (293)
T ss_dssp CCCSEEEEE---------ECTTSCHHHHHHHHHHHHTCCCEEEEHHHH--------------HCC---HHHHHHHHHHHH
T ss_pred CCCeEEEEE---------CCCCCCHHHHHHHHHHHhCCCEEEEeHHHh--------------hhccCchhHHHHHHHHHH
Confidence 445799999 99999999999999984 4444444444 667899999999999987
Q ss_pred ccceeeeccCCCCcEEEEEeccccccccccc-----chhHhHHHHHHHHhhccC----------CCCCCeEEEEccCCCC
Q psy11009 150 GFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL-----RGSKTFRTLCIHKYRLLT----------FPSTPVQYSIQKGIPW 214 (863)
Q Consensus 150 ~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~-----~~~~~v~n~lL~~ld~~~----------~~~~~VivIaATN~p~ 214 (863)
+..+. ....||||||||+|+++.++.. ....++.+.|+..||+.. ....+|+||+|||+++
T Consensus 91 a~~~~----~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~ 166 (293)
T 3t15_A 91 AAEII----RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS 166 (293)
T ss_dssp HHHHH----TTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC
T ss_pred HHHHH----hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc
Confidence 53222 3668999999999999986643 134577799999998543 1234799999999999
Q ss_pred CccHHHhh--ccceEEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHH
Q psy11009 215 DIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNV 275 (863)
Q Consensus 215 ~LD~AllR--RFD~~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~l 275 (863)
.||+|++| |||+.|+ +|+.++|.+||+.++... +++++.++..++||+|++|..+
T Consensus 167 ~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~~----~~~~~~l~~~~~~~~~~~l~~~ 223 (293)
T 3t15_A 167 TLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRTD----NVPAEDVVKIVDNFPGQSIDFF 223 (293)
T ss_dssp C--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGGG----CCCHHHHHHHHHHSCSCCHHHH
T ss_pred cCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccCC----CCCHHHHHHHhCCCCcccHHHH
Confidence 99999999 9999998 579999999999988643 5779999999999999999753
No 40
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.89 E-value=1.8e-22 Score=244.64 Aligned_cols=134 Identities=21% Similarity=0.214 Sum_probs=96.1
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccch
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGE 785 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge 785 (863)
.+++|++.+++.+.+.+..... ......+|..++||+||||||||++|+++|..+ +.+|+.++++++...+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~---~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~ 567 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARA---GLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTS 567 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTT---TCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC
T ss_pred CcCcChHHHHHHHHHHHHHHHc---ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccc
Confidence 4589999999999988842110 011122444579999999999999999999998 7899999999988776554
Q ss_pred hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCC-----CCCCCceEEEEecCCCC
Q psy11009 786 SEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSA-----EDSSKVVMVLAATNFPW 860 (863)
Q Consensus 786 ~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~-----~~~~~~VvVIaTTN~P~ 860 (863)
...++...+...++||||||||.+.+ .+++.||..||.-.-. .....+++||+|||.+.
T Consensus 568 ----~~~l~~~~~~~~~~vl~lDEi~~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~ 631 (758)
T 3pxi_A 568 ----GGQLTEKVRRKPYSVVLLDAIEKAHP------------DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGA 631 (758)
T ss_dssp -------CHHHHHHCSSSEEEEECGGGSCH------------HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSST
T ss_pred ----cchhhHHHHhCCCeEEEEeCccccCH------------HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCCh
Confidence 22344445556789999999988733 5788899988753211 11234578999999765
Q ss_pred C
Q psy11009 861 E 861 (863)
Q Consensus 861 ~ 861 (863)
.
T Consensus 632 ~ 632 (758)
T 3pxi_A 632 S 632 (758)
T ss_dssp T
T ss_pred h
Confidence 3
No 41
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.89 E-value=1.4e-23 Score=227.53 Aligned_cols=162 Identities=42% Similarity=0.669 Sum_probs=143.2
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
+.....|+.+|++|+|++++++.|.+++.+|+.+|+.|...+ .+++++||+||||||||++|+++|++++.+++.++++
T Consensus 4 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~ 83 (301)
T 3cf0_A 4 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 83 (301)
T ss_dssp CCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred cccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhH
Confidence 345678999999999999999999999999999999998876 6778999999999999999999999999999999999
Q ss_pred cccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q psy11009 777 TLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLA 854 (863)
Q Consensus 777 ~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIa 854 (863)
++..++.|+.+..++.+|..++...|+||||||||.++..++... ......+++++||..|+++... ..|+||+
T Consensus 84 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~----~~v~vi~ 159 (301)
T 3cf0_A 84 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTK----KNVFIIG 159 (301)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTT----SSEEEEE
T ss_pred HHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCC----CCEEEEE
Confidence 999999999999999999999999999999999999988764321 1234567899999999987542 4599999
Q ss_pred ecCCCCCCC
Q psy11009 855 ATNFPWEGA 863 (863)
Q Consensus 855 TTN~P~~ID 863 (863)
|||+|+.||
T Consensus 160 atn~~~~ld 168 (301)
T 3cf0_A 160 ATNRPDIID 168 (301)
T ss_dssp EESCGGGSC
T ss_pred ecCCccccC
Confidence 999999886
No 42
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=99.89 E-value=7.6e-24 Score=183.92 Aligned_cols=70 Identities=33% Similarity=0.634 Sum_probs=68.2
Q ss_pred hHHHHHHHHHHHHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy11009 440 KYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQS 510 (863)
Q Consensus 440 ~l~~i~e~~~laRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i~~ 510 (863)
++.+|+|++++|||||++||||++++||+|+++||+||+.+++|| .+|+|||+++|+|++|+++||+|++
T Consensus 8 ~~~~i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~-~~r~kW~~~~~ei~~E~~~Vk~i~~ 77 (78)
T 2rpa_A 8 SLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDT-HLRQKWQQVWQEINVEAKQVKDIMK 77 (78)
T ss_dssp SSHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCH-HHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCH-HHHHhHHHHHHHHHHHHHHHHHHHh
Confidence 489999999999999999999999999999999999999999999 9999999999999999999999965
No 43
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.88 E-value=1.8e-22 Score=223.94 Aligned_cols=176 Identities=47% Similarity=0.826 Sum_probs=153.5
Q ss_pred CCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHH
Q psy11009 685 YGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 685 ~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~ 764 (863)
.+++....+.+.+.+..++++.+|++|+|++.+++.|.+.+.+|+.+++.+...+.+++++||+||||||||++|+++|.
T Consensus 60 ~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~ 139 (357)
T 3d8b_A 60 KNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIAS 139 (357)
T ss_dssp TTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHH
T ss_pred ccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHH
Confidence 45678888999999999999999999999999999999999999999999887777889999999999999999999999
Q ss_pred HhCCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCC
Q psy11009 765 ECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAE 844 (863)
Q Consensus 765 el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~ 844 (863)
+++.+|+.++++++...+.|+.+..++.+|..+....|+||||||||.++..+..+ .+....+++++||..|+++...
T Consensus 140 ~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~lL~~l~~~~~~- 217 (357)
T 3d8b_A 140 QSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDG-EHESSRRIKTEFLVQLDGATTS- 217 (357)
T ss_dssp HTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC-----
T ss_pred HcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCC-cchHHHHHHHHHHHHHhccccc-
Confidence 99999999999999999999999999999999999999999999999998876443 3567788999999999987532
Q ss_pred CCCCceEEEEecCCCCCCC
Q psy11009 845 DSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 845 ~~~~~VvVIaTTN~P~~ID 863 (863)
....|+||+|||+|+.+|
T Consensus 218 -~~~~v~vI~atn~~~~l~ 235 (357)
T 3d8b_A 218 -SEDRILVVGATNRPQEID 235 (357)
T ss_dssp -CCCCEEEEEEESCGGGBC
T ss_pred -CCCCEEEEEecCChhhCC
Confidence 234699999999998876
No 44
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.88 E-value=3.5e-22 Score=245.19 Aligned_cols=146 Identities=12% Similarity=0.112 Sum_probs=89.6
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchh------c-ccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHh
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLS------L-VLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSIT 147 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~------~-~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~ 147 (863)
..++|++ |.||||||++++.+++.- .. + ..+.++.+.+.+ .+-..+.|..+.+++.+|
T Consensus 191 ~~~vlL~---------G~pG~GKT~la~~la~~l-~~~~~p~~l~~~~~~~l~~~~l-----~~g~~~~g~~~~~l~~~~ 255 (854)
T 1qvr_A 191 KNNPVLI---------GEPGVGKTAIVEGLAQRI-VKGDVPEGLKGKRIVSLQMGSL-----LAGAKYRGEFEERLKAVI 255 (854)
T ss_dssp CCCCEEE---------ECTTSCHHHHHHHHHHHH-HHTCSCTTSTTCEEEEECC----------------CHHHHHHHHH
T ss_pred CCceEEE---------cCCCCCHHHHHHHHHHHH-hcCCCchhhcCCeEEEeehHHh-----hccCccchHHHHHHHHHH
Confidence 3467888 999999999999999850 00 0 223333333222 112567899999999999
Q ss_pred hcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC----CccHHHhhc
Q psy11009 148 NRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW----DIDEALRRR 223 (863)
Q Consensus 148 ~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~----~LD~AllRR 223 (863)
... ....+|+||||||+|.+...+.......+.+.|...+.. .++.+|+|||.++ .+|+||.||
T Consensus 256 ~~~-------~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~-----~~i~~I~at~~~~~~~~~~d~aL~rR 323 (854)
T 1qvr_A 256 QEV-------VQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR-----GELRLIGATTLDEYREIEKDPALERR 323 (854)
T ss_dssp HHH-------HTTCSSEEEEECCC-------------------HHHHHT-----TCCCEEEEECHHHHHHHTTCTTTCSC
T ss_pred HHH-------HhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC-----CCeEEEEecCchHHhhhccCHHHHhC
Confidence 753 123579999999999998766554444455555555532 2688999999886 489999999
Q ss_pred cceEEEecCCCHHHHHHHHHHHhcc
Q psy11009 224 LEKRIYIPLPSKAGREALLKINLKE 248 (863)
Q Consensus 224 FD~~I~i~lPd~~~R~~IL~~~l~~ 248 (863)
|+. |+|+.|+.+++.+||+.++..
T Consensus 324 f~~-i~l~~p~~~e~~~iL~~~~~~ 347 (854)
T 1qvr_A 324 FQP-VYVDEPTVEETISILRGLKEK 347 (854)
T ss_dssp CCC-EEECCCCHHHHHHHHHHHHHH
T ss_pred Cce-EEeCCCCHHHHHHHHHhhhhh
Confidence 996 999999999999999987753
No 45
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.88 E-value=2e-22 Score=216.20 Aligned_cols=172 Identities=53% Similarity=0.851 Sum_probs=148.2
Q ss_pred HHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc
Q psy11009 690 DLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT 769 (863)
Q Consensus 690 ~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~ 769 (863)
++++.+.+.|+.++|+.+|++|+|++.+++.+.+.+.+|+.+|+.+.+.+.+++++||+||||||||++|+++|++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 35667778899999999999999999999999999999999999998877778999999999999999999999999999
Q ss_pred EEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q psy11009 770 FFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKV 849 (863)
Q Consensus 770 ~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~ 849 (863)
|+.++++++...+.|+.+..++.+|..+....|++|||||+|.+...+... ..+...+++++||..++++.... ....
T Consensus 82 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~-~~~~~~~~~~~ll~~l~~~~~~~-~~~~ 159 (297)
T 3b9p_A 82 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSS-EHEASRRLKTEFLVEFDGLPGNP-DGDR 159 (297)
T ss_dssp EEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC-------C
T ss_pred eEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccC-cchHHHHHHHHHHHHHhcccccC-CCCc
Confidence 999999999999999999999999999999999999999999998876543 24556788899999999875431 2345
Q ss_pred eEEEEecCCCCCCC
Q psy11009 850 VMVLAATNFPWEGA 863 (863)
Q Consensus 850 VvVIaTTN~P~~ID 863 (863)
++||+|||+|+.+|
T Consensus 160 v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 160 IVVLAATNRPQELD 173 (297)
T ss_dssp EEEEEEESCGGGBC
T ss_pred EEEEeecCChhhCC
Confidence 99999999998876
No 46
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.87 E-value=9e-23 Score=228.61 Aligned_cols=173 Identities=50% Similarity=0.817 Sum_probs=139.7
Q ss_pred ChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 688 DNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 688 d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
+..+.+.+...|++++++.+|++|+|++.+++.|.+++.+++.+++.|...+.+++++||+||||||||++|+++|.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~ 173 (389)
T 3vfd_A 94 DSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESN 173 (389)
T ss_dssp ---CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTT
T ss_pred cHHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhc
Confidence 33444556678999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred CcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCC
Q psy11009 768 TTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSS 847 (863)
Q Consensus 768 ~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~ 847 (863)
.+|+.++++++.+.|.|+.+..++.+|..++...|+||||||||.++..+.. ..+....+++++||..|+++... ..
T Consensus 174 ~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~-~~~~~~~~~~~~ll~~l~~~~~~--~~ 250 (389)
T 3vfd_A 174 ATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERRE-GEHDASRRLKTEFLIEFDGVQSA--GD 250 (389)
T ss_dssp CEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC------
T ss_pred CcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCC-ccchHHHHHHHHHHHHhhccccc--CC
Confidence 9999999999999999999999999999999999999999999999887643 23556788999999999987543 23
Q ss_pred CceEEEEecCCCCCCC
Q psy11009 848 KVVMVLAATNFPWEGA 863 (863)
Q Consensus 848 ~~VvVIaTTN~P~~ID 863 (863)
..|+||+|||+|+.||
T Consensus 251 ~~v~vI~atn~~~~l~ 266 (389)
T 3vfd_A 251 DRVLVMGATNRPQELD 266 (389)
T ss_dssp -CEEEEEEESCGGGCC
T ss_pred CCEEEEEecCCchhcC
Confidence 4699999999999886
No 47
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.86 E-value=2e-21 Score=235.27 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=102.4
Q ss_pred eecceeEeeecccccccCcCCCcccccccccccccchhcccc-------hhhhccCcchhHHHHHHHhhhhhHHHHHHHH
Q psy11009 74 IRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLP-------LLAEEHGKLKFKEAITLALTVGSSLNLYRSI 146 (863)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i 146 (863)
...++|++ |.||||||++|+.+++. +..-..| .+..+.+.+ .+-..+.|..+.+++.+
T Consensus 206 ~~~~vlL~---------G~~GtGKT~la~~la~~-l~~~~v~~~~~~~~~~~~~~~~l-----~~~~~~~g~~e~~l~~~ 270 (758)
T 1r6b_X 206 RKNNPLLV---------GESGVGKTAIAEGLAWR-IVQGDVPEVMADCTIYSLDIGSL-----LAGTKYRGDFEKRFKAL 270 (758)
T ss_dssp SSCEEEEE---------CCTTSSHHHHHHHHHHH-HHHTCSCGGGTTCEEEECCCC--------CCCCCSSCHHHHHHHH
T ss_pred CCCCeEEE---------cCCCCCHHHHHHHHHHH-HHhCCCChhhcCCEEEEEcHHHH-----hccccccchHHHHHHHH
Confidence 34567888 99999999999999884 0011111 222222222 11145789999999999
Q ss_pred hhcccceeeeccCCCCcEEEEEeccccccccccc-chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHH
Q psy11009 147 TNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL-RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEAL 220 (863)
Q Consensus 147 ~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~-~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~Al 220 (863)
|+.. ...+++||||||+|.++..+.. +......+.|...+ .. .++.+|+|||.++ .+|+||
T Consensus 271 ~~~~--------~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l----~~-~~~~~I~at~~~~~~~~~~~d~aL 337 (758)
T 1r6b_X 271 LKQL--------EQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL----SS-GKIRVIGSTTYQEFSNIFEKDRAL 337 (758)
T ss_dssp HHHH--------SSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCS----SS-CCCEEEEEECHHHHHCCCCCTTSS
T ss_pred HHHH--------HhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHH----hC-CCeEEEEEeCchHHhhhhhcCHHH
Confidence 9763 4456899999999999877654 23333333332222 22 3789999999754 689999
Q ss_pred hhccceEEEecCCCHHHHHHHHHHHhcc
Q psy11009 221 RRRLEKRIYIPLPSKAGREALLKINLKE 248 (863)
Q Consensus 221 lRRFD~~I~i~lPd~~~R~~IL~~~l~~ 248 (863)
.|||+ .|+|+.|+.++|.+||+.++..
T Consensus 338 ~~Rf~-~i~v~~p~~~e~~~il~~l~~~ 364 (758)
T 1r6b_X 338 ARRFQ-KIDITEPSIEETVQIINGLKPK 364 (758)
T ss_dssp GGGEE-EEECCCCCHHHHHHHHHHHHHH
T ss_pred HhCce-EEEcCCCCHHHHHHHHHHHHHH
Confidence 99999 6999999999999999987754
No 48
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.86 E-value=9.6e-22 Score=210.88 Aligned_cols=157 Identities=45% Similarity=0.706 Sum_probs=128.5
Q ss_pred cCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc
Q psy11009 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS 780 (863)
Q Consensus 702 k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~ 780 (863)
..|..+|+||+|+++++++|.+.+.+|+.+++.++..+ .+++|++|+||||||||+|++++|.+++..++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 35789999999999999999999999999999999887 67789999999999999999999999999999999999999
Q ss_pred cccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCC
Q psy11009 781 KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 781 ~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~ 860 (863)
.+.|+.++.++.+|+.++...|+++|+||+|.++..|+.. ......+++++++.+|++... .+.++++++||+|+
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~-~~~~~~~~~~~~l~~Lsgg~~----~~~~i~ia~tn~p~ 157 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDR-ETGASVRVVNQLLTEMDGLEA----RQQVFIMAATNRPD 157 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCS----TTCEEEEEEESCGG
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCC-cchHHHHHHHHHHHhhhcccc----cCCEEEEeecCChh
Confidence 9999999999999999988899999999999998766432 223345788999999998743 34589999999999
Q ss_pred CCC
Q psy11009 861 EGA 863 (863)
Q Consensus 861 ~ID 863 (863)
.||
T Consensus 158 ~LD 160 (274)
T 2x8a_A 158 IID 160 (274)
T ss_dssp GSC
T ss_pred hCC
Confidence 987
No 49
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.85 E-value=6.6e-21 Score=200.66 Aligned_cols=160 Identities=38% Similarity=0.577 Sum_probs=134.5
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc
Q psy11009 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777 (863)
Q Consensus 699 ~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~ 777 (863)
|..++++.+|++|+|++.+++.+.+.+.+ +.+++.+...+ ..++++||+||||||||++|+++|.+++.+++.+++++
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~ 80 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSD 80 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCS
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHH
Confidence 56788999999999999999999997754 66677777665 56789999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC--chhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q psy11009 778 LTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAA 855 (863)
Q Consensus 778 l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~--~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaT 855 (863)
+...+.|..+..++.+|+.+....|++|||||+|.+...++.. +......++++++|..|+++... ..++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~----~~~~vI~~ 156 (257)
T 1lv7_A 81 FVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN----EGIIVIAA 156 (257)
T ss_dssp STTSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS----SCEEEEEE
T ss_pred HHHHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC----CCEEEEEe
Confidence 9999999999999999999998889999999999998876432 22344457889999999987543 34899999
Q ss_pred cCCCCCCC
Q psy11009 856 TNFPWEGA 863 (863)
Q Consensus 856 TN~P~~ID 863 (863)
||+|+.+|
T Consensus 157 tn~~~~l~ 164 (257)
T 1lv7_A 157 TNRPDVLD 164 (257)
T ss_dssp ESCTTTSC
T ss_pred eCCchhCC
Confidence 99999886
No 50
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=9.9e-21 Score=201.65 Aligned_cols=159 Identities=42% Similarity=0.666 Sum_probs=139.7
Q ss_pred hcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc
Q psy11009 701 QKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779 (863)
Q Consensus 701 ~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~ 779 (863)
...|+.+|++|+|++++++.|.+++..++.+++.+...+ .+++++||+||||||||++|+++|.+++.+++.++++++.
T Consensus 9 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 88 (285)
T 3h4m_A 9 DERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELV 88 (285)
T ss_dssp ESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGC
T ss_pred cCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHH
Confidence 457788999999999999999999999999999999877 6778999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecC
Q psy11009 780 SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATN 857 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN 857 (863)
..+.|+.+..++.+|..+....|+||||||+|.+++++.... ........+..++..++++... ..++||+|||
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~----~~~~vI~ttn 164 (285)
T 3h4m_A 89 KKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDAR----GDVKIIGATN 164 (285)
T ss_dssp CCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSS----SSEEEEEECS
T ss_pred HhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCC----CCEEEEEeCC
Confidence 999999999999999999999999999999999988775432 2334456777888888776543 3589999999
Q ss_pred CCCCCC
Q psy11009 858 FPWEGA 863 (863)
Q Consensus 858 ~P~~ID 863 (863)
.|+.+|
T Consensus 165 ~~~~l~ 170 (285)
T 3h4m_A 165 RPDILD 170 (285)
T ss_dssp CGGGBC
T ss_pred CchhcC
Confidence 998876
No 51
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.84 E-value=7e-21 Score=218.86 Aligned_cols=156 Identities=39% Similarity=0.596 Sum_probs=133.7
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccccc
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK 781 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~ 781 (863)
.+..+|+||+|++++++++.+.+.. +..|..|...+ ..++|+||+||||||||++|+++|.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5778999999999999999998764 56777787776 677899999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC--chhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 782 YRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 782 ~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~--~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
+.|.....++.+|..++...||||||||||.+..+|+.+ +.+....+++++||..||++... ..|+||+|||+|
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~----~~viVIaaTn~~ 164 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK----EGIIVMAATNRP 164 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG----GTEEEEEEESCG
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC----CCEEEEEecCCh
Confidence 999999999999999999999999999999999877532 23445567899999999987543 349999999999
Q ss_pred CCCC
Q psy11009 860 WEGA 863 (863)
Q Consensus 860 ~~ID 863 (863)
+.+|
T Consensus 165 ~~Ld 168 (476)
T 2ce7_A 165 DILD 168 (476)
T ss_dssp GGSC
T ss_pred hhhc
Confidence 8876
No 52
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.84 E-value=5.7e-21 Score=220.66 Aligned_cols=156 Identities=42% Similarity=0.650 Sum_probs=142.1
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccccc
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK 781 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~ 781 (863)
.++.+|++|+|++.+++.|.+.+.+++.+|+.|...+ .+++++||+||||||||++|+++|.+++.+|+.++++++.+.
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 4677999999999999999999999999999999886 777899999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCC
Q psy11009 782 YRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861 (863)
Q Consensus 782 ~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ 861 (863)
+.|+.+..++.+|..+....|++|||||||.+++++... ..+...+++++||..|+++... ..|+||+|||+|+.
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~-~~~~~~~~~~~LL~~ld~~~~~----~~v~vIaaTn~~~~ 352 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKT-HGEVERRIVSQLLTLMDGLKQR----AHVIVMAATNRPNS 352 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSC-CCHHHHHHHHHHHHHHHHSCTT----SCEEEEEEESCGGG
T ss_pred hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccc-cchHHHHHHHHHHHHhhccccC----CceEEEEecCCccc
Confidence 999999999999999999999999999999999887543 3567789999999999987543 45999999999987
Q ss_pred CC
Q psy11009 862 GA 863 (863)
Q Consensus 862 ID 863 (863)
||
T Consensus 353 Ld 354 (489)
T 3hu3_A 353 ID 354 (489)
T ss_dssp BC
T ss_pred cC
Confidence 75
No 53
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.83 E-value=2.1e-20 Score=195.99 Aligned_cols=155 Identities=35% Similarity=0.517 Sum_probs=118.0
Q ss_pred CCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccc
Q psy11009 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKY 782 (863)
Q Consensus 704 p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~ 782 (863)
|+.+|++|+|++++++.|.+.+.+ +..++.|...+ .+++++||+||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 568999999999999999998765 56666666655 6678999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc---hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 783 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES---EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 783 ~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~---~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
.+.....++.+|..+....|+||||||+|.+..++.... .+......+..|+..++++... ..++||+|||.|
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~----~~~~vi~~tn~~ 155 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTT----DHVIVLASTNRA 155 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTT----CCEEEEEEESCG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCC----CCEEEEecCCCh
Confidence 999999999999999988999999999999987764321 1223346778889889876442 358999999999
Q ss_pred CCCC
Q psy11009 860 WEGA 863 (863)
Q Consensus 860 ~~ID 863 (863)
+.+|
T Consensus 156 ~~ld 159 (262)
T 2qz4_A 156 DILD 159 (262)
T ss_dssp GGGG
T ss_pred hhcC
Confidence 8765
No 54
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.77 E-value=9.5e-19 Score=202.27 Aligned_cols=155 Identities=39% Similarity=0.589 Sum_probs=132.8
Q ss_pred CCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccc
Q psy11009 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKY 782 (863)
Q Consensus 704 p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~ 782 (863)
+..+|+||+|+++++.++.+.+.. +..+..+...+ ..++|+||+||||||||+||+++|.+++.+++.++++++...+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~ 104 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 104 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh
Confidence 788999999999999999997754 56677777766 6678999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC--chhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCC
Q psy11009 783 RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 783 ~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~--~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~ 860 (863)
.|.....++.+|+.+....|+++||||||.+...++.. ..++...+++++||..|++... ...++|+++||+|+
T Consensus 105 ~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~----~~~viviAatn~p~ 180 (499)
T 2dhr_A 105 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK----DTAIVVMAATNRPD 180 (499)
T ss_dssp TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS----SCCCEEEECCSCGG
T ss_pred hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc----CccEEEEEecCChh
Confidence 99988899999999887889999999999998776532 2234456788999999998753 34589999999998
Q ss_pred CCC
Q psy11009 861 EGA 863 (863)
Q Consensus 861 ~ID 863 (863)
.+|
T Consensus 181 ~LD 183 (499)
T 2dhr_A 181 ILD 183 (499)
T ss_dssp GSC
T ss_pred hcC
Confidence 876
No 55
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.77 E-value=2.8e-19 Score=193.24 Aligned_cols=124 Identities=20% Similarity=0.217 Sum_probs=92.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccccchhHHHHHHHHHHH----HhCCCeEEEEcCCCcccc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMA----RFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A----~~~~p~ILfIDEID~l~~ 815 (863)
.+++++||+||||||||++|+++|++++.+|+.++++++.+.|.|+.+..++.+|..+ +...|+||||||||.+++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~ 113 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAG 113 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC----
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcC
Confidence 5668999999999999999999999999999999999999999999999999999988 567899999999999998
Q ss_pred cCCCCch-hhHHHHHHHHHHHHHhcCCC-------CCCCCCceEEEEecCCCCCCC
Q psy11009 816 RRGSESE-HEASRRVKSELLVQMDGLSS-------AEDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 816 ~R~~~~~-~e~~~rv~~~LL~~lD~l~~-------~~~~~~~VvVIaTTN~P~~ID 863 (863)
++++... ....+++++.|+..||+... .......|+||+|||+|+.||
T Consensus 114 ~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld 169 (293)
T 3t15_A 114 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLY 169 (293)
T ss_dssp ----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--
T ss_pred CCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCC
Confidence 6643222 23456788999999985541 111345689999999999886
No 56
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.77 E-value=1.7e-20 Score=198.19 Aligned_cols=159 Identities=42% Similarity=0.597 Sum_probs=127.9
Q ss_pred hcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc
Q psy11009 701 QKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779 (863)
Q Consensus 701 ~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~ 779 (863)
.++|+.+|++|+|++.+++.+.+.+.+ +.+++.+...+ .+++++||+||||||||++|+++|.+++.+++.++++++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 467889999999999999999997764 67788887665 6668999999999999999999999999999999999998
Q ss_pred ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCc---hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 780 SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES---EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~---~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
..+.|.....++.+|..+....|+||||||+|.+...+..++ .+....+++++||..|+++.. ....++||+||
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~---~~~~v~vi~tt 158 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS---ENAPVIVLAAT 158 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC---SCSCCEEEECB
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc---CCCCEEEEEec
Confidence 888887777778899999888999999999999987653221 112223456778888876643 23458999999
Q ss_pred CCCCCCC
Q psy11009 857 NFPWEGA 863 (863)
Q Consensus 857 N~P~~ID 863 (863)
|.|+.+|
T Consensus 159 n~~~~ld 165 (268)
T 2r62_A 159 NRPEILD 165 (268)
T ss_dssp SCCTTSC
T ss_pred CCchhcC
Confidence 9999876
No 57
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.75 E-value=5.4e-18 Score=178.07 Aligned_cols=160 Identities=38% Similarity=0.580 Sum_probs=129.2
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc
Q psy11009 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777 (863)
Q Consensus 699 ~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~ 777 (863)
+....|+.+|++++|+++++..+.+.+.. +..+..+...+ ..++|++|+||||||||++++++|..++.+++.+++.+
T Consensus 6 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~ 84 (254)
T 1ixz_A 6 VLTEAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 84 (254)
T ss_dssp --CCCCSCCGGGCCSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCCcHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHH
Confidence 45678899999999999999999987654 45566677665 55678999999999999999999999999999999999
Q ss_pred ccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC--chhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEe
Q psy11009 778 LTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAA 855 (863)
Q Consensus 778 l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~--~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaT 855 (863)
+...+.+.....++.+|+.+....|+++||||+|.+...++.. ..+....+++++++..|++... ...++++++
T Consensus 85 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~----~~~~i~~a~ 160 (254)
T 1ixz_A 85 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK----DTAIVVMAA 160 (254)
T ss_dssp HHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT----TCCEEEEEE
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC----CCCEEEEEc
Confidence 8888888888889999999887889999999999998766431 1234456788999999987643 345899999
Q ss_pred cCCCCCCC
Q psy11009 856 TNFPWEGA 863 (863)
Q Consensus 856 TN~P~~ID 863 (863)
||+|+.+|
T Consensus 161 t~~p~~ld 168 (254)
T 1ixz_A 161 TNRPDILD 168 (254)
T ss_dssp ESCGGGSC
T ss_pred cCCchhCC
Confidence 99999886
No 58
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.71 E-value=3e-18 Score=196.18 Aligned_cols=151 Identities=20% Similarity=0.252 Sum_probs=114.6
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC--CcEEEEecccccc
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSSTLTS 780 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~--~~~i~vs~s~l~~ 780 (863)
.|...|++++|++++++.+..++. .......+++++||+||||||||++|+++|++++ .+|+.++++++.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~-------~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~ 103 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVE-------LIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYS 103 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHH-------HHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCC
T ss_pred ChhhchhhccCHHHHHHHHHHHHH-------HHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHH
Confidence 345578999999999999988763 3333345678999999999999999999999999 9999999999999
Q ss_pred cccchhHHHHHHHHHHH---HhCCCeEEEEcCCCcccccCCCCchhh---HH---------------HHHHHHHHHHHhc
Q psy11009 781 KYRGESEKLVRLLFEMA---RFYAPSTIFIDEIDSLCSRRGSESEHE---AS---------------RRVKSELLVQMDG 839 (863)
Q Consensus 781 ~~~Ge~e~~ir~lf~~A---~~~~p~ILfIDEID~l~~~R~~~~~~e---~~---------------~rv~~~LL~~lD~ 839 (863)
++.|+.+. ++.+|..+ +...|+||||||||.++++|+....+. .. .++.++++..|+.
T Consensus 104 ~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~ 182 (456)
T 2c9o_A 104 TEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK 182 (456)
T ss_dssp SSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHH
T ss_pred HhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhh
Confidence 99999988 89999999 778899999999999999886542111 11 1233456666653
Q ss_pred CCCCCCCCCceEEEEecCCCCCCC
Q psy11009 840 LSSAEDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 840 l~~~~~~~~~VvVIaTTN~P~~ID 863 (863)
... ..+..|+|++|||+|+.+|
T Consensus 183 ~~~--~~~~~v~i~attn~~~~ld 204 (456)
T 2c9o_A 183 ERV--EAGDVIYIEANSGAVKRQG 204 (456)
T ss_dssp TTC--CTTEEEEEETTTCCEEEEE
T ss_pred ccC--CCCCEEEEEcCCCCcccCC
Confidence 221 1234577779999988764
No 59
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.70 E-value=9.5e-17 Score=171.29 Aligned_cols=157 Identities=39% Similarity=0.583 Sum_probs=126.7
Q ss_pred cCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc
Q psy11009 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS 780 (863)
Q Consensus 702 k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~ 780 (863)
..|+.+|++++|.+++++++.+.+.. +..+..+...+ ..++|++|+||||||||+|++++|..++.+++.+++.++..
T Consensus 33 ~~~~~~~~~i~g~~~~~~~l~~l~~~-~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~ 111 (278)
T 1iy2_A 33 EAPKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE 111 (278)
T ss_dssp CCCCCCGGGSSSCHHHHHHHHHHHHH-HHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHH-HHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH
Confidence 34788999999999999999986653 44566666665 55678999999999999999999999999999999998888
Q ss_pred cccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCC--chhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCC
Q psy11009 781 KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE--SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNF 858 (863)
Q Consensus 781 ~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~--~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~ 858 (863)
.+.+.....+..+|+.+....|+++||||+|.+...+... .........+++++..|++... ...++++++||+
T Consensus 112 ~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~----~~~~i~~a~t~~ 187 (278)
T 1iy2_A 112 MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK----DTAIVVMAATNR 187 (278)
T ss_dssp STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT----TCCEEEEEEESC
T ss_pred HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC----CCCEEEEEecCC
Confidence 8888888888999999987889999999999997765421 1233446678888888886532 345899999999
Q ss_pred CCCCC
Q psy11009 859 PWEGA 863 (863)
Q Consensus 859 P~~ID 863 (863)
|+.||
T Consensus 188 p~~ld 192 (278)
T 1iy2_A 188 PDILD 192 (278)
T ss_dssp TTSSC
T ss_pred chhCC
Confidence 99887
No 60
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.70 E-value=6.4e-20 Score=209.99 Aligned_cols=166 Identities=11% Similarity=0.051 Sum_probs=112.4
Q ss_pred ecceeEeeecccccccCcCCCccccccccccc-----ccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhc
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIK-----MNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNR 149 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~ 149 (863)
..|+|+| |.||||||++|+++++ .+|+.+....+ .+.++|+++. ++.+|.+
T Consensus 63 ~~~iLl~---------GppGtGKT~la~ala~~l~~~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~f~~ 118 (456)
T 2c9o_A 63 GRAVLLA---------GPPGTGKTALALAIAQELGSKVPFCPMVGSEV--------------YSTEIKKTEV-LMENFRR 118 (456)
T ss_dssp TCEEEEE---------CCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG--------------CCSSSCHHHH-HHHHHHH
T ss_pred CCeEEEE---------CCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH--------------HHHhhhhhHH-HHHHHHH
Confidence 3589999 9999999999999998 44566555555 5667999998 9999987
Q ss_pred ccceeeeccCCCCcEEEEEecccccccccccch---h-------------------HhHHHHHHHHhhccC-CCCCCeEE
Q psy11009 150 GFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRG---S-------------------KTFRTLCIHKYRLLT-FPSTPVQY 206 (863)
Q Consensus 150 ~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~---~-------------------~~v~n~lL~~ld~~~-~~~~~Viv 206 (863)
+.. .....||||||||+|+++.+|.... . .++.+.++.+|+... ..++.|+|
T Consensus 119 a~~-----~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~i 193 (456)
T 2c9o_A 119 AIG-----LRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERVEAGDVIYI 193 (456)
T ss_dssp TEE-----EEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTCCTTEEEEE
T ss_pred HHh-----hhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccCCCCCEEEE
Confidence 421 1345799999999999999885421 1 133455777775322 22335667
Q ss_pred EEccCCCCCccHHHhh--ccce--EEEecCCC--HHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHH
Q psy11009 207 SIQKGIPWDIDEALRR--RLEK--RIYIPLPS--KAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRD 278 (863)
Q Consensus 207 IaATN~p~~LD~AllR--RFD~--~I~i~lPd--~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~ 278 (863)
+||||+++.+|+|+.| |||+ .+++++|+ ..+|.+||+.++. .|++.+|..|+| ||||.++|..
T Consensus 194 ~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~-------~dl~~~a~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 194 EANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTL-------HDLDVANARPQG--GQDILSMMGQ 262 (456)
T ss_dssp ETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEH-------HHHHHTC-----------------
T ss_pred EcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHH-------HHHHHHHHhCCC--hhHHHHHHhh
Confidence 7999999999999998 9999 78889995 5888888876663 278999999999 9999999964
No 61
>2di4_A Zinc protease, cell division protein FTSH homolog; metalloproteinase, hexamer-ring, hydrolase; 2.79A {Aquifex aeolicus} SCOP: a.269.1.1
Probab=99.65 E-value=2e-17 Score=173.37 Aligned_cols=121 Identities=17% Similarity=0.159 Sum_probs=87.9
Q ss_pred hhhhhcccccceeeeccccceeeeecccCCccc-----cccC-Cccccc-----cccccccchHHHHHHHhhhhhhhhhh
Q psy11009 327 EDLENITVERIAPHMSTIGKKLYLKFQKTPIVT-----LATG-PVGLIS-----RDNLKHKSPIKMNFLSLVLPLLAEEH 395 (863)
Q Consensus 327 ~~l~~~~~~~~~~a~he~ghalv~~~l~~~~~~-----ll~G-p~g~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (863)
+......++++++||||+|||||+|++.+.+.. +..| ..|.+. ++++.++..+..+|..+++||+|||+
T Consensus 7 k~~~~s~~ek~~vAyHEAGHAlva~~l~~~~pV~KVTIiPRG~alG~t~~~P~ed~~~~tk~~l~~~i~v~LgGRaAEel 86 (238)
T 2di4_A 7 SHMTISPKEKEKIAIHEAGHALMGLVSDDDDKVHKISIIPRGMALGVTQQLPIEDKHIYDKKDLYNKILVLLGGRAAEEV 86 (238)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHHHHCSSCCCCCCEECC----------------CCCCBHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEEeecCCcceEEEeCCcccccccCHHHHHHHHHHHHhHHHHHHH
Confidence 344455678899999999999999999865522 2122 123332 56788999999999999999999999
Q ss_pred cc--C----CcccchhhhhhhhhhccccccccccchhhHHHHHHHhhcchhHHHHH----HHHHHHHHhhhcCCCccchh
Q psy11009 396 GN--N----GISNDWHKTSALLVCTANHLIRNSVNLSSVTAIMVEKIMTDKYAEIA----ESTTIARESSLTGNYDSACL 465 (863)
Q Consensus 396 ~~--~----~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ms~~l~~i~----e~~~laRe~a~~gnY~~~~~ 465 (863)
++ + ||+|||+++|.| |+.||++||||++++++. +++++| ++....+||+..+
T Consensus 87 ifG~g~vttGA~~Dl~~AT~i-----------------Ar~MV~~~GMs~~lG~v~~~~~~~~flg-~~~~~~~~Se~ta 148 (238)
T 2di4_A 87 FFGKDGITTGAENDLQRATDL-----------------AYRMVSMWGMSDKVGPIAIRRVANPFLG-GMTTAVDTSPDLL 148 (238)
T ss_dssp HHHHHHCCGGGHHHHHHHHHH-----------------HHHHHHTSCCCTTTCSCCCCC-----------CCCSCCHHHH
T ss_pred HhCCCCcccChHhHHHHHHHH-----------------HHHHHHHhCCCCCCCceeecCCcccccc-ccccccccCHHHH
Confidence 99 4 999999999999 999999999999888775 348899 8888899999864
No 62
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.62 E-value=3.4e-16 Score=168.31 Aligned_cols=183 Identities=10% Similarity=-0.026 Sum_probs=134.1
Q ss_pred cceeEeeecccccccCcCCCcccccccccccc-cchhc--ccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccc
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM-NFLSL--VLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFY 152 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~--~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~ 152 (863)
.++|+| |.||||||++|+++++. +..+. ..|.+... ++...+.++|....+++.+|..+
T Consensus 68 ~~vll~---------G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-------~~~l~~~~~g~~~~~~~~~~~~~-- 129 (309)
T 3syl_A 68 LHMSFT---------GNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-------RDDLVGQYIGHTAPKTKEVLKRA-- 129 (309)
T ss_dssp CEEEEE---------ECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-------GGGTCCSSTTCHHHHHHHHHHHH--
T ss_pred ceEEEE---------CCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-------HHHhhhhcccccHHHHHHHHHhc--
Confidence 357888 99999999999999884 00000 11222111 22225567899999999999753
Q ss_pred eeeeccCCCCcEEEEEeccccccccccc-chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhccce
Q psy11009 153 IEDYEVSPPGPTLAVAKMFSSLAVQKLL-RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRLEK 226 (863)
Q Consensus 153 l~~~~~~~~~P~IlFiDEiDal~~~R~~-~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRFD~ 226 (863)
.++||||||+|.++..+.. .....+.+.|+..|+... .+++||++||.++ .+||+|++||+.
T Consensus 130 ---------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~---~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~ 197 (309)
T 3syl_A 130 ---------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR---DDLVVILAGYADRMENFFQSNPGFRSRIAH 197 (309)
T ss_dssp ---------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT---TTCEEEEEECHHHHHHHHHHSTTHHHHEEE
T ss_pred ---------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC---CCEEEEEeCChHHHHHHHhhCHHHHHhCCe
Confidence 4689999999999977643 456788899998887533 3689999998765 368999999999
Q ss_pred EEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhh-------CCCCCHHHHHHHHHHHHHHHHHhhh
Q psy11009 227 RIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQ-------LDGYSGADITNVCRDASMMSMRRKI 288 (863)
Q Consensus 227 ~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~-------TeG~SGADI~~lv~~Aal~air~~~ 288 (863)
.|+|+.|+.+++..||+.++.+..+. .+-.+..++.. ...-++.++.++|..|...+.++..
T Consensus 198 ~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r~~ 267 (309)
T 3syl_A 198 HIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANRLF 267 (309)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999765443 22234556655 2223489999999999887777653
No 63
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.61 E-value=2.4e-16 Score=184.43 Aligned_cols=200 Identities=14% Similarity=0.095 Sum_probs=116.7
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHH---HHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEE
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAI---TLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAV 167 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~---~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlF 167 (863)
|.||||||++|+++++. +..|..+...+-.. .++. ....|+|....+++..|..+ ...+| |||
T Consensus 115 Gp~GtGKTtlar~ia~~----l~~~~~~i~~~~~~-~~~~~~g~~~~~ig~~~~~~~~~~~~a--------~~~~~-vl~ 180 (543)
T 3m6a_A 115 GPPGVGKTSLAKSIAKS----LGRKFVRISLGGVR-DESEIRGHRRTYVGAMPGRIIQGMKKA--------GKLNP-VFL 180 (543)
T ss_dssp SSSSSSHHHHHHHHHHH----HTCEEEEECCCC---------------------CHHHHHHTT--------CSSSE-EEE
T ss_pred CCCCCCHHHHHHHHHHh----cCCCeEEEEecccc-hhhhhhhHHHHHhccCchHHHHHHHHh--------hccCC-EEE
Confidence 99999999999999985 22222221111110 0110 01257899899999888763 33444 999
Q ss_pred EecccccccccccchhHhHHHHHHHHhhccCCC------------CCCeEEEEccCCCCCccHHHhhccceEEEecCCCH
Q psy11009 168 AKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFP------------STPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSK 235 (863)
Q Consensus 168 iDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~------------~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~ 235 (863)
|||+|.+...+.. ...+.||..||..... -.+|+||+|||+++.||+||+|||+ .|+|+.|+.
T Consensus 181 lDEid~l~~~~~~----~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~ 255 (543)
T 3m6a_A 181 LDEIDKMSSDFRG----DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRDRME-IINIAGYTE 255 (543)
T ss_dssp EEESSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHHHEE-EEECCCCCH
T ss_pred Ehhhhhhhhhhcc----CHHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHhhcc-eeeeCCCCH
Confidence 9999999876532 2445666666532211 1478999999999999999999996 699999999
Q ss_pred HHHHHHHHHHhc-----cCCCC---Cccc---HHHHhhhCCC-CCH----HHHHHHHHHHHHHHHHhhhcCCChhhhccC
Q psy11009 236 AGREALLKINLK-----EVKVD---PAVD---LTHIASQLDG-YSG----ADITNVCRDASMMSMRRKIIGLTPEQIRQI 299 (863)
Q Consensus 236 ~~R~~IL~~~l~-----~~~l~---~dvd---l~~LA~~TeG-~SG----ADI~~lv~~Aal~air~~~~~~~~~~~~~~ 299 (863)
++|..||+.|+. ...+. -.++ +..|+....+ ... ..|+.+|+.|+..+++..
T Consensus 256 ~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~------------ 323 (543)
T 3m6a_A 256 IEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIVAEE------------ 323 (543)
T ss_dssp HHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHHhcC------------
Confidence 999999999872 22222 1223 3444443332 222 555556665555544431
Q ss_pred CccccCCCCCHHHHHHHHHHhcCCC
Q psy11009 300 PKEELDLPVSQRDFEEALARCNKSV 324 (863)
Q Consensus 300 ~~~~~~~~Vt~~Df~~AL~~v~psv 324 (863)
.....|+.+||..++...+...
T Consensus 324 ---~~~~~It~~~l~~~Lg~~~~~~ 345 (543)
T 3m6a_A 324 ---RKRITVTEKNLQDFIGKRIFRY 345 (543)
T ss_dssp ---CSCCEECTTTTHHHHCSCCSCC
T ss_pred ---CcceecCHHHHHHHhCCcccCc
Confidence 1134689999999886655443
No 64
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.55 E-value=8.4e-15 Score=161.26 Aligned_cols=208 Identities=15% Similarity=0.028 Sum_probs=136.9
Q ss_pred cceeEeeecccccccCcCCCcccccccccccc-----cchhcccchhhhc-cCcchh-----------------------
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM-----NFLSLVLPLLAEE-HGKLKF----------------------- 126 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~l~~~-~gk~s~----------------------- 126 (863)
.++|+| |.||||||++|+++++. .|+.+..+.+... .++..+
T Consensus 71 ~~vLl~---------GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (368)
T 3uk6_A 71 RAVLIA---------GQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSL 141 (368)
T ss_dssp CEEEEE---------ESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEH
T ss_pred CEEEEE---------CCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccH
Confidence 478888 99999999999999973 3444444443211 111100
Q ss_pred HHH-----------HHHHhhhhhHHHHHHHHhhccccee-eeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHh
Q psy11009 127 KEA-----------ITLALTVGSSLNLYRSITNRGFYIE-DYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKY 194 (863)
Q Consensus 127 ~e~-----------~~~~~~vg~se~~~r~i~~~~~~l~-~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~l 194 (863)
.+. -.+....|.....+|..|....... ........|+||||||+|.+. ....+.|+..+
T Consensus 142 ~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~--------~~~~~~L~~~l 213 (368)
T 3uk6_A 142 HEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLD--------IESFSFLNRAL 213 (368)
T ss_dssp HHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSB--------HHHHHHHHHHT
T ss_pred hhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccC--------hHHHHHHHHHh
Confidence 000 0011223444566666665432110 001122348999999999885 24456666666
Q ss_pred hccCCCCCCeEEEEcc-----------CCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhh
Q psy11009 195 RLLTFPSTPVQYSIQK-----------GIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIAS 262 (863)
Q Consensus 195 d~~~~~~~~VivIaAT-----------N~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~ 262 (863)
+.. ...++++++. |.++.||+++++||.. |+|++|+.+++.+||+.++...... ++-.++.|+.
T Consensus 214 e~~---~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~ 289 (368)
T 3uk6_A 214 ESD---MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTR 289 (368)
T ss_dssp TCT---TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHH
T ss_pred hCc---CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 432 2245555543 4588999999999988 8999999999999999998654333 2345788999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhc
Q psy11009 263 QLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCN 321 (863)
Q Consensus 263 ~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ 321 (863)
.+.|.++.++.++|..|+..|.++. ...|+.+|+..++....
T Consensus 290 ~~~~G~~r~~~~ll~~a~~~A~~~~-----------------~~~It~~~v~~a~~~~~ 331 (368)
T 3uk6_A 290 IGLETSLRYAIQLITAASLVCRKRK-----------------GTEVQVDDIKRVYSLFL 331 (368)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHTT-----------------CSSBCHHHHHHHHHHSB
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCHHHHHHHHHHhc
Confidence 9987799999999999999887765 45899999999998743
No 65
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.54 E-value=1.3e-15 Score=161.57 Aligned_cols=196 Identities=14% Similarity=0.015 Sum_probs=130.9
Q ss_pred eeecceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhc
Q psy11009 73 AIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNR 149 (863)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~ 149 (863)
....++|+| |.||||||++|+++++. .|+.+..|... .| ...+.....++.+|+.
T Consensus 62 ~~~~~vLl~---------G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~--~g-----------~~~~~~~~~~~~~~~~ 119 (272)
T 1d2n_A 62 TPLVSVLLE---------GPPHSGKTALAAKIAEESNFPFIKICSPDKM--IG-----------FSETAKCQAMKKIFDD 119 (272)
T ss_dssp CSEEEEEEE---------CSTTSSHHHHHHHHHHHHTCSEEEEECGGGC--TT-----------CCHHHHHHHHHHHHHH
T ss_pred CCCeEEEEE---------CCCCCcHHHHHHHHHHHhCCCEEEEeCHHHh--cC-----------CchHHHHHHHHHHHHH
Confidence 344578888 99999999999999984 33333333210 11 1123344677888875
Q ss_pred ccceeeeccCCCCcEEEEEeccccccccccc--chhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccH-HHhhccce
Q psy11009 150 GFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL--RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDE-ALRRRLEK 226 (863)
Q Consensus 150 ~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~--~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~-AllRRFD~ 226 (863)
+ ....|+||||||+|.++..+.. .....+.+.|+..+++......+++||+|||.++.||+ ++.+||+.
T Consensus 120 ~--------~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~ 191 (272)
T 1d2n_A 120 A--------YKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFST 191 (272)
T ss_dssp H--------HTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSE
T ss_pred H--------HhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccce
Confidence 3 3456899999999999877643 34567777787777776555557999999999999999 56669999
Q ss_pred EEEecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCC----CHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCcc
Q psy11009 227 RIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGY----SGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKE 302 (863)
Q Consensus 227 ~I~i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~----SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~ 302 (863)
.|++|.++. |.+|++.+.....+ .+.++..|+..+.|| +-.++.+++..|.. .
T Consensus 192 ~i~~p~l~~--r~~i~~i~~~~~~~-~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~-----~--------------- 248 (272)
T 1d2n_A 192 TIHVPNIAT--GEQLLEALELLGNF-KDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQ-----M--------------- 248 (272)
T ss_dssp EEECCCEEE--HHHHHHHHHHHTCS-CHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTT-----S---------------
T ss_pred EEcCCCccH--HHHHHHHHHhcCCC-CHHHHHHHHHHhcCCCccccHHHHHHHHHHHhh-----h---------------
Confidence 998865543 44444444433333 355688999999998 44455555544311 1
Q ss_pred ccCCCCCHHHHHHHHHHhcCC
Q psy11009 303 ELDLPVSQRDFEEALARCNKS 323 (863)
Q Consensus 303 ~~~~~Vt~~Df~~AL~~v~ps 323 (863)
......++|+.++.....+
T Consensus 249 --~~~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 249 --DPEYRVRKFLALLREEGAS 267 (272)
T ss_dssp --CGGGHHHHHHHHHHHTSCC
T ss_pred --chHHHHHHHHHHHHHcCCc
Confidence 1235567888888766543
No 66
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.52 E-value=2.2e-14 Score=154.06 Aligned_cols=137 Identities=21% Similarity=0.258 Sum_probs=107.8
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhhcc----CCCCceEEEECCCCCChHHHHHHHHHHh-------CCcEEEEecccc
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFKGI----RRPWKGVLMVGPPGTGKTMLAKAVATEC-------GTTFFNVCSSTL 778 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~~~----~~p~kgvLL~GPPGtGKT~LAraIA~el-------~~~~i~vs~s~l 778 (863)
+|+|++.+++.|.+.+.++.. +..+... ..+..++||+||||||||++|+++|+.+ ..+++.++++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 699999999999998865442 3333322 3455689999999999999999999998 348999999999
Q ss_pred cccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCC
Q psy11009 779 TSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNF 858 (863)
Q Consensus 779 ~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~ 858 (863)
...+.|.....+..+|..+. ++||||||+|.++..++. +.....+++.|+..|+.. ...++||+|||.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~---~~vl~iDEid~l~~~~~~---~~~~~~~~~~Ll~~l~~~------~~~~~~i~~~~~ 178 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM---GGVLFIDEAYYLYRPDNE---RDYGQEAIEILLQVMENN------RDDLVVILAGYA 178 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT---TSEEEEETGGGSCCCC------CCTHHHHHHHHHHHHHC------TTTCEEEEEECH
T ss_pred hhhcccccHHHHHHHHHhcC---CCEEEEEChhhhccCCCc---ccccHHHHHHHHHHHhcC------CCCEEEEEeCCh
Confidence 99999999888888888874 789999999999865432 334567888999999753 234778888875
Q ss_pred C
Q psy11009 859 P 859 (863)
Q Consensus 859 P 859 (863)
+
T Consensus 179 ~ 179 (309)
T 3syl_A 179 D 179 (309)
T ss_dssp H
T ss_pred H
Confidence 3
No 67
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.51 E-value=1.2e-13 Score=150.48 Aligned_cols=181 Identities=9% Similarity=0.005 Sum_probs=131.7
Q ss_pred cceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccc
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFY 152 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~ 152 (863)
.++|+| |.||||||++|+.+++. .|+.+..+.+. ....++.++..
T Consensus 56 ~~vll~---------G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~--- 103 (338)
T 3pfi_A 56 DHILFS---------GPAGLGKTTLANIISYEMSANIKTTAAPMIE--------------------KSGDLAAILTN--- 103 (338)
T ss_dssp CCEEEE---------CSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------------------SHHHHHHHHHT---
T ss_pred CeEEEE---------CcCCCCHHHHHHHHHHHhCCCeEEecchhcc--------------------chhHHHHHHHh---
Confidence 358888 99999999999999984 34444444331 12233444432
Q ss_pred eeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCC---------------CCCCeEEEEccCCCCCcc
Q psy11009 153 IEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTF---------------PSTPVQYSIQKGIPWDID 217 (863)
Q Consensus 153 l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~---------------~~~~VivIaATN~p~~LD 217 (863)
...++||||||+|.+.. .+.+.|+..|+.... ...+|++|+|||++..+|
T Consensus 104 -------~~~~~vl~lDEi~~l~~--------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~ 168 (338)
T 3pfi_A 104 -------LSEGDILFIDEIHRLSP--------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLS 168 (338)
T ss_dssp -------CCTTCEEEEETGGGCCH--------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSC
T ss_pred -------ccCCCEEEEechhhcCH--------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccC
Confidence 35678999999998853 345666666643210 011489999999999999
Q ss_pred HHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhh
Q psy11009 218 EALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQI 296 (863)
Q Consensus 218 ~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~ 296 (863)
+++++||+..|+++.|+.+++..|++.++...... .+..++.|+..+.| +..++.+++..+...+....
T Consensus 169 ~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~--------- 238 (338)
T 3pfi_A 169 NPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVND--------- 238 (338)
T ss_dssp HHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHTT---------
T ss_pred HHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhhc---------
Confidence 99999999999999999999999999999765543 23446778887665 66888888888766665443
Q ss_pred ccCCccccCCCCCHHHHHHHHHHhc
Q psy11009 297 RQIPKEELDLPVSQRDFEEALARCN 321 (863)
Q Consensus 297 ~~~~~~~~~~~Vt~~Df~~AL~~v~ 321 (863)
...|+.+++..++....
T Consensus 239 --------~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 239 --------EEIITEKRANEALNSLG 255 (338)
T ss_dssp --------CSEECHHHHHHHHHHHT
T ss_pred --------CCccCHHHHHHHHHHhC
Confidence 33688999988887643
No 68
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.51 E-value=2.6e-14 Score=127.39 Aligned_cols=77 Identities=31% Similarity=0.581 Sum_probs=72.4
Q ss_pred ecCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCC
Q psy11009 230 IPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVS 309 (863)
Q Consensus 230 i~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt 309 (863)
-.+||.++|.+||+.|++++++..++|++.||..|+|||||||+++|++|++.|+|+. ...|+
T Consensus 8 ~~~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------------~~~I~ 70 (86)
T 2krk_A 8 HSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVT 70 (86)
T ss_dssp CCCCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------------CSEEC
T ss_pred CCCcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------------CCCCC
Confidence 3689999999999999999999889999999999999999999999999999999986 45899
Q ss_pred HHHHHHHHHHhcCC
Q psy11009 310 QRDFEEALARCNKS 323 (863)
Q Consensus 310 ~~Df~~AL~~v~ps 323 (863)
++||..|+.+++|.
T Consensus 71 ~~df~~Al~~v~p~ 84 (86)
T 2krk_A 71 QEDFEMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHccC
Confidence 99999999999875
No 69
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.51 E-value=1.1e-14 Score=161.21 Aligned_cols=130 Identities=26% Similarity=0.398 Sum_probs=97.5
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhh---hccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccccc-ccchh
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFF---KGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK-YRGES 786 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~---~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~-~~Ge~ 786 (863)
|+|++.+++.+..++.......... .....++.++||+||||||||++|+++|..++.+|+.++++++... |.|..
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~ 96 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGED 96 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccccc
Confidence 8999999999999884222211111 1222466799999999999999999999999999999999988754 77765
Q ss_pred -HHHHHHHHHHH----HhCCCeEEEEcCCCcccccCCCCc--hhhHHHHHHHHHHHHHhcC
Q psy11009 787 -EKLVRLLFEMA----RFYAPSTIFIDEIDSLCSRRGSES--EHEASRRVKSELLVQMDGL 840 (863)
Q Consensus 787 -e~~ir~lf~~A----~~~~p~ILfIDEID~l~~~R~~~~--~~e~~~rv~~~LL~~lD~l 840 (863)
...++.+|..+ ....++||||||||.+...+...+ ......++++.||..||+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~ 157 (363)
T 3hws_A 97 VENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT 157 (363)
T ss_dssp HTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCc
Confidence 55667777665 334589999999999988765432 2233456999999999953
No 70
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.50 E-value=3.6e-14 Score=123.68 Aligned_cols=75 Identities=33% Similarity=0.636 Sum_probs=70.7
Q ss_pred cCCCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCH
Q psy11009 231 PLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQ 310 (863)
Q Consensus 231 ~lPd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~ 310 (863)
|+||.++|.+||+.|++++++..++|++.||..|+|||||||+++|++|++.|+++. ...|++
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~ 63 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------------RVHVTQ 63 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------------CSEECH
T ss_pred CcCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------------CCCCCH
Confidence 799999999999999999998889999999999999999999999999999999986 458999
Q ss_pred HHHHHHHHHhcC
Q psy11009 311 RDFEEALARCNK 322 (863)
Q Consensus 311 ~Df~~AL~~v~p 322 (863)
+||..|+.++..
T Consensus 64 ~d~~~Al~~v~~ 75 (78)
T 3kw6_A 64 EDFEMAVAKVMQ 75 (78)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 71
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.50 E-value=6.4e-15 Score=167.65 Aligned_cols=141 Identities=24% Similarity=0.275 Sum_probs=84.9
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccC--CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc-cccch
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIR--RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRGE 785 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~--~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~-~~~Ge 785 (863)
.+|+|++++++.|..++..+..++..+...+ .+++++||+||||||||++|+++|+.++.+|+.++++.+.. +|.|+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4699999999999999987776666665544 35689999999999999999999999999999999999888 59995
Q ss_pred -hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEe-cCCCCCCC
Q psy11009 786 -SEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAA-TNFPWEGA 863 (863)
Q Consensus 786 -~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaT-TN~P~~ID 863 (863)
.+..++.+|+.+... +++||++.+... ..+...++++++||.+||++..... | +++ ||+|+.||
T Consensus 95 d~e~~lr~lf~~a~~~----~~~De~d~~~~~----~~~~~e~rvl~~LL~~~dg~~~~~~----v--~a~~TN~~~~ld 160 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKL----VRQQEIAKNRAR----AEDVAEERILDALLPPAKNQWGEVE----N--HDSHSSTRQAFR 160 (444)
T ss_dssp CTHHHHHHHHHHHHHH----HHHHHHHSCC--------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhc----chhhhhhhhhcc----chhhHHHHHHHHHHHHhhccccccc----c--ccccccCHHHHH
Confidence 799999999988753 458998877543 2355678999999999999865422 3 455 99999987
No 72
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.50 E-value=1.6e-15 Score=172.62 Aligned_cols=129 Identities=12% Similarity=0.030 Sum_probs=47.6
Q ss_pred cceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHH-hhhhh-HHHHHHHHhhcc
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLA-LTVGS-SLNLYRSITNRG 150 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~-~~vg~-se~~~r~i~~~~ 150 (863)
.|+|+| |.||||||++|+++|+. +|+.+..+.+ .+ .|||. ++..++.+|..+
T Consensus 51 ~~iLl~---------GppGtGKT~lar~lA~~l~~~~~~v~~~~~--------------~~~g~vG~d~e~~lr~lf~~a 107 (444)
T 1g41_A 51 KNILMI---------GPTGVGKTEIARRLAKLANAPFIKVEATKF--------------TEVGYVGKEVDSIIRDLTDSA 107 (444)
T ss_dssp CCEEEE---------CCTTSSHHHHHHHHHHHTTCCEEEEEGGGG--------------C----CCCCTHHHHHHHHHHH
T ss_pred ceEEEE---------cCCCCCHHHHHHHHHHHcCCCceeecchhh--------------cccceeeccHHHHHHHHHHHH
Confidence 578888 99999999999999995 3444433333 34 58995 899999999864
Q ss_pred cceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEc-cCCCCCccHHHhh--ccceE
Q psy11009 151 FYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQ-KGIPWDIDEALRR--RLEKR 227 (863)
Q Consensus 151 ~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaA-TN~p~~LD~AllR--RFD~~ 227 (863)
+. ++++||+|++.........++++++||.+||++.... .| +++ ||+|+.||+||+| |||+.
T Consensus 108 ~~------------~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~-~v--~a~~TN~~~~ld~aL~rggr~D~~ 172 (444)
T 1g41_A 108 MK------------LVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEV-EN--HDSHSSTRQAFRKKLREGQLDDKE 172 (444)
T ss_dssp HH------------HHHHHHHHSCC-------------------------------------------------------
T ss_pred Hh------------cchhhhhhhhhccchhhHHHHHHHHHHHHhhcccccc-cc--ccccccCHHHHHHHHHcCCCcceE
Confidence 22 3469999998766666778999999999999997654 33 555 9999999999999 99999
Q ss_pred EEecCCCHH-HHHHHH
Q psy11009 228 IYIPLPSKA-GREALL 242 (863)
Q Consensus 228 I~i~lPd~~-~R~~IL 242 (863)
|+|++|+.. +|.+||
T Consensus 173 i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 173 IEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ----------------
T ss_pred EEEcCCCCccchhhhh
Confidence 999999988 788876
No 73
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.49 E-value=2.8e-14 Score=125.81 Aligned_cols=81 Identities=23% Similarity=0.415 Sum_probs=68.4
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHH
Q psy11009 234 SKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDF 313 (863)
Q Consensus 234 d~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df 313 (863)
|.++|.+||+.|++++++.+++|++.||..|+|||||||+++|++|++.|+++. ..+|+++||
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------------~~~i~~~df 64 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------------RYIVLAKDF 64 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------------CSSBCHHHH
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHH
Confidence 689999999999999999889999999999999999999999999999999875 458999999
Q ss_pred HHHHHHhcCCCchhhhhhc
Q psy11009 314 EEALARCNKSVAREDLENI 332 (863)
Q Consensus 314 ~~AL~~v~psvs~~~l~~~ 332 (863)
..|+.+++|+++ ++++.|
T Consensus 65 ~~Al~~~~ps~~-~~l~~y 82 (83)
T 3aji_B 65 EKAYKTVIKKDE-QEHEFY 82 (83)
T ss_dssp HHHHHHHCC----------
T ss_pred HHHHHHHccCch-HHHHhc
Confidence 999999999998 666655
No 74
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.49 E-value=7.3e-14 Score=148.17 Aligned_cols=145 Identities=23% Similarity=0.274 Sum_probs=100.6
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhcc-CCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccccc-ccchh
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGI-RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK-YRGES 786 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~-~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~-~~Ge~ 786 (863)
..++|.+...+.+....... .+..... ..++.++||+||||||||++|+++|..++.+|+.+++++.... ..+..
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l---~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHH---HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred cCCCCccHHHHHHHHHHHHH---HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 45777777666555531100 1122222 3566899999999999999999999999999999987753222 12233
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCC
Q psy11009 787 EKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861 (863)
Q Consensus 787 e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ 861 (863)
...++.+|..+....+++|||||||.+++.+..+ ......++..|+..+++... ....++||+|||.|+.
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~--~~~~~~~l~~L~~~~~~~~~---~~~~~~ii~ttn~~~~ 179 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG--PRFSNLVLQALLVLLKKAPP---QGRKLLIIGTTSRKDV 179 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTT--TBCCHHHHHHHHHHTTCCCS---TTCEEEEEEEESCHHH
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCC--hhHHHHHHHHHHHHhcCccC---CCCCEEEEEecCChhh
Confidence 4567888888887889999999999998765322 23345667777777765532 3456889999999854
No 75
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.47 E-value=2.6e-13 Score=147.98 Aligned_cols=141 Identities=17% Similarity=0.189 Sum_probs=97.8
Q ss_pred HhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEec
Q psy11009 696 ERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775 (863)
Q Consensus 696 ~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~ 775 (863)
...|.+++++.+|++++|.+.+++.+..++.. ....+.+..++||+||||||||++|+++|+.++.+|+.+++
T Consensus 16 ~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~-------~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~ 88 (338)
T 3pfi_A 16 DETYETSLRPSNFDGYIGQESIKKNLNVFIAA-------AKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAA 88 (338)
T ss_dssp -------CCCCSGGGCCSCHHHHHHHHHHHHH-------HHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred hhhhhhccCCCCHHHhCChHHHHHHHHHHHHH-------HHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecc
Confidence 35688999999999999999999999998742 22223455789999999999999999999999999999998
Q ss_pred ccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCC------------
Q psy11009 776 STLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSA------------ 843 (863)
Q Consensus 776 s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~------------ 843 (863)
..+.. ...+...+.. ...+++|||||||.+.. ..+..|+..|+.....
T Consensus 89 ~~~~~------~~~~~~~~~~--~~~~~vl~lDEi~~l~~------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~ 148 (338)
T 3pfi_A 89 PMIEK------SGDLAAILTN--LSEGDILFIDEIHRLSP------------AIEEVLYPAMEDYRLDIIIGSGPAAQTI 148 (338)
T ss_dssp GGCCS------HHHHHHHHHT--CCTTCEEEEETGGGCCH------------HHHHHHHHHHHTSCC---------CCCC
T ss_pred hhccc------hhHHHHHHHh--ccCCCEEEEechhhcCH------------HHHHHHHHHHHhccchhhcccCccccce
Confidence 77531 2222333322 34689999999998843 3567777777643210
Q ss_pred CCCCCceEEEEecCCCCCCC
Q psy11009 844 EDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 844 ~~~~~~VvVIaTTN~P~~ID 863 (863)
.-....+++|+|||++..++
T Consensus 149 ~~~~~~~~~i~atn~~~~l~ 168 (338)
T 3pfi_A 149 KIDLPKFTLIGATTRAGMLS 168 (338)
T ss_dssp CCCCCCCEEEEEESCGGGSC
T ss_pred ecCCCCeEEEEeCCCccccC
Confidence 00011488999999876543
No 76
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.47 E-value=7.2e-14 Score=149.38 Aligned_cols=154 Identities=25% Similarity=0.370 Sum_probs=105.0
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhc--cCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc-cccch
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKG--IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS-KYRGE 785 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~--~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~-~~~Ge 785 (863)
++++|++.+++.+...+..+...+.+... .+.++.++||+||||||||++|+++|+.++.+++.++++.+.. .|.|.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 45999999999999888543222211111 1234579999999999999999999999999999999998876 56553
Q ss_pred h-HHHHHHHHHHH-----HhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCC----CCCCCceEEEEe
Q psy11009 786 S-EKLVRLLFEMA-----RFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSA----EDSSKVVMVLAA 855 (863)
Q Consensus 786 ~-e~~ir~lf~~A-----~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~----~~~~~~VvVIaT 855 (863)
. ...++.++..+ ....++||||||+|.+...............+++.|+..|++..-. ......++||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 3 34556665532 1124789999999999877644433444455788899988853110 001234778888
Q ss_pred c----CCCCCC
Q psy11009 856 T----NFPWEG 862 (863)
Q Consensus 856 T----N~P~~I 862 (863)
+ +.|..+
T Consensus 175 ~~~~~~~~~~l 185 (310)
T 1ofh_A 175 GAFQVARPSDL 185 (310)
T ss_dssp ECCSSSCGGGS
T ss_pred CCcccCCcccC
Confidence 4 455544
No 77
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.45 E-value=1.3e-13 Score=123.26 Aligned_cols=78 Identities=21% Similarity=0.419 Sum_probs=68.3
Q ss_pred CHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHH
Q psy11009 234 SKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDF 313 (863)
Q Consensus 234 d~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df 313 (863)
|.++|.+||+.|++++++..++|++.||..|+|||||||+++|++|++.|+|+. ...|+++||
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-----------------~~~i~~~df 64 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-----------------RKVATEKDF 64 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS-----------------CSSBCHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc-----------------cccCCHHHH
Confidence 568999999999999999999999999999999999999999999999999986 457999999
Q ss_pred HHHHHHhcCCCchhh
Q psy11009 314 EEALARCNKSVARED 328 (863)
Q Consensus 314 ~~AL~~v~psvs~~~ 328 (863)
..|+.++.+++.+++
T Consensus 65 ~~Al~~v~~~~~~~~ 79 (88)
T 3vlf_B 65 LKAVDKVISGYKKFS 79 (88)
T ss_dssp HHHHHHHTC------
T ss_pred HHHHHHHhcCccccc
Confidence 999999999987654
No 78
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.45 E-value=1.8e-13 Score=134.18 Aligned_cols=144 Identities=18% Similarity=0.290 Sum_probs=101.2
Q ss_pred HHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh------
Q psy11009 693 EMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC------ 766 (863)
Q Consensus 693 e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el------ 766 (863)
+.....|.+++++..|++++|.++..+.+.+.+.. ....+++|+||||||||++|+++++.+
T Consensus 6 ~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~ 73 (195)
T 1jbk_A 6 KKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP 73 (195)
T ss_dssp HHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSC
T ss_pred HHHhHHHHHHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCc
Confidence 34445677888899999999999999999887631 234689999999999999999999997
Q ss_pred ----CCcEEEEeccccc--ccccchhHHHHHHHHHHH-HhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc
Q psy11009 767 ----GTTFFNVCSSTLT--SKYRGESEKLVRLLFEMA-RFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG 839 (863)
Q Consensus 767 ----~~~~i~vs~s~l~--~~~~Ge~e~~ir~lf~~A-~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~ 839 (863)
+.+++.+++..+. ..+.+.....++.++... +...+++|||||+|.+...+....... +...|...++.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~----~~~~l~~~~~~ 149 (195)
T 1jbk_A 74 EGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMD----AGNMLKPALAR 149 (195)
T ss_dssp GGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCC----CHHHHHHHHHT
T ss_pred hhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHH----HHHHHHHhhcc
Confidence 7889999988765 345566667777777755 345688999999999976542211111 22333333321
Q ss_pred CCCCCCCCCceEEEEecCCCC
Q psy11009 840 LSSAEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 840 l~~~~~~~~~VvVIaTTN~P~ 860 (863)
..+.+|++||.+.
T Consensus 150 --------~~~~~i~~~~~~~ 162 (195)
T 1jbk_A 150 --------GELHCVGATTLDE 162 (195)
T ss_dssp --------TSCCEEEEECHHH
T ss_pred --------CCeEEEEeCCHHH
Confidence 2356778887654
No 79
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.43 E-value=2.7e-13 Score=133.08 Aligned_cols=141 Identities=20% Similarity=0.277 Sum_probs=100.9
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---------- 766 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---------- 766 (863)
..|.+++++..|++++|.+...+.+.+.+.. ....++||+||||||||++|++++..+
T Consensus 10 ~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~ 77 (187)
T 2p65_A 10 RDLTALARAGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLK 77 (187)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTT
T ss_pred HHHHHHHhccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhc
Confidence 3466677788999999999999988887631 234689999999999999999999997
Q ss_pred CCcEEEEecccccc--cccchhHHHHHHHHHHHHhC-CCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCC
Q psy11009 767 GTTFFNVCSSTLTS--KYRGESEKLVRLLFEMARFY-APSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSA 843 (863)
Q Consensus 767 ~~~~i~vs~s~l~~--~~~Ge~e~~ir~lf~~A~~~-~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~ 843 (863)
+.+++.+++..+.. .+.+.....+..++..+... .+.+|||||+|.+.+.+...... ..+.+.|+..++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~---~~~~~~l~~~~~~---- 150 (187)
T 2p65_A 78 GRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGA---LDAGNILKPMLAR---- 150 (187)
T ss_dssp TCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTS---CCTHHHHHHHHHT----
T ss_pred CCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccc---hHHHHHHHHHHhc----
Confidence 78899888877652 34556666677777766544 68899999999998654311111 1233444444432
Q ss_pred CCCCCceEEEEecCCCC
Q psy11009 844 EDSSKVVMVLAATNFPW 860 (863)
Q Consensus 844 ~~~~~~VvVIaTTN~P~ 860 (863)
..+++|++||.+.
T Consensus 151 ----~~~~ii~~~~~~~ 163 (187)
T 2p65_A 151 ----GELRCIGATTVSE 163 (187)
T ss_dssp ----TCSCEEEEECHHH
T ss_pred ----CCeeEEEecCHHH
Confidence 2367888888654
No 80
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.43 E-value=4.6e-13 Score=145.28 Aligned_cols=132 Identities=21% Similarity=0.125 Sum_probs=99.0
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
..|+++|+|.+|++++|.+++++.+..++. .+..+..+|++||||||||++|+++|++++.++++++++
T Consensus 14 ~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~ 82 (324)
T 3u61_B 14 HILEQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGS 82 (324)
T ss_dssp SSHHHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETT
T ss_pred chHHHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccc
Confidence 469999999999999999999999998874 233446788889999999999999999999999999987
Q ss_pred cccccccchhHHHHHHHHH-HHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceE
Q psy11009 777 TLTSKYRGESEKLVRLLFE-MARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVM 851 (863)
Q Consensus 777 ~l~~~~~Ge~e~~ir~lf~-~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~Vv 851 (863)
+.. ...++..+. .+.. ..+.||||||+|.+.+ ...++.|+..++... ..+.
T Consensus 83 ~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-----------~~~~~~L~~~le~~~------~~~~ 138 (324)
T 3u61_B 83 DCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-----------AESQRHLRSFMEAYS------SNCS 138 (324)
T ss_dssp TCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-----------HHHHHHHHHHHHHHG------GGCE
T ss_pred ccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-----------HHHHHHHHHHHHhCC------CCcE
Confidence 742 223333333 2332 1578999999999852 124566777775432 3367
Q ss_pred EEEecCCCCCCC
Q psy11009 852 VLAATNFPWEGA 863 (863)
Q Consensus 852 VIaTTN~P~~ID 863 (863)
+|+|||.+..++
T Consensus 139 iI~~~n~~~~l~ 150 (324)
T 3u61_B 139 IIITANNIDGII 150 (324)
T ss_dssp EEEEESSGGGSC
T ss_pred EEEEeCCccccC
Confidence 888999987654
No 81
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.41 E-value=5.9e-13 Score=142.26 Aligned_cols=211 Identities=13% Similarity=0.070 Sum_probs=136.2
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhhH-HHHHHHHhhcc
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGSS-LNLYRSITNRG 150 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~s-e~~~r~i~~~~ 150 (863)
..++|+| |.||||||++|+.+++. .|+.+....+.. ..|+|.. ...++.++...
T Consensus 50 ~~~vll~---------G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 107 (310)
T 1ofh_A 50 PKNILMI---------GPTGVGKTEIARRLAKLANAPFIKVEATKFTE-------------VGYVGKEVDSIIRDLTDSA 107 (310)
T ss_dssp CCCEEEE---------CCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSS-------------CCSGGGSTTHHHHHHHHTT
T ss_pred CceEEEE---------CCCCCCHHHHHHHHHHHhCCCEEEEcchhccc-------------CCccCccHHHHHHHHHHHh
Confidence 3578888 99999999999999984 222222222211 0345543 34567777542
Q ss_pred cceeeeccCCCCcEEEEEeccccccccccc---c-hhHhHHHHHHHHhhccCC-------CCCCeEEEEc----cCCCCC
Q psy11009 151 FYIEDYEVSPPGPTLAVAKMFSSLAVQKLL---R-GSKTFRTLCIHKYRLLTF-------PSTPVQYSIQ----KGIPWD 215 (863)
Q Consensus 151 ~~l~~~~~~~~~P~IlFiDEiDal~~~R~~---~-~~~~v~n~lL~~ld~~~~-------~~~~VivIaA----TN~p~~ 215 (863)
. +.+.. ...++||||||+|.+...+.. . ....+.+.|+..|++... ...+++||++ ++.++.
T Consensus 108 ~--~~~~~-~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 184 (310)
T 1ofh_A 108 G--GAIDA-VEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSD 184 (310)
T ss_dssp T--TCHHH-HHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGG
T ss_pred h--HHHhh-ccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCccc
Confidence 1 11111 124789999999999877632 1 123357788888875310 1236889988 568999
Q ss_pred ccHHHhhccceEEEecCCCHHHHHHHHHH----Hh-------ccCCCC---CcccHHHHhhhC-------CCCCHHHHHH
Q psy11009 216 IDEALRRRLEKRIYIPLPSKAGREALLKI----NL-------KEVKVD---PAVDLTHIASQL-------DGYSGADITN 274 (863)
Q Consensus 216 LD~AllRRFD~~I~i~lPd~~~R~~IL~~----~l-------~~~~l~---~dvdl~~LA~~T-------eG~SGADI~~ 274 (863)
+|+++++||+..|+|+.|+.+++.+|++. ++ ...... ++-.++.|+..+ ++....++.+
T Consensus 185 l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~ 264 (310)
T 1ofh_A 185 LIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHT 264 (310)
T ss_dssp SCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHH
T ss_pred CCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHH
Confidence 99999999999999999999999999983 11 111111 223356677766 2578899999
Q ss_pred HHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhc
Q psy11009 275 VCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCN 321 (863)
Q Consensus 275 lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ 321 (863)
+|..+...+..+.... +.....|+.+|+..++....
T Consensus 265 ~l~~~~~~~~~~~~~~-----------~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 265 VMERLMDKISFSASDM-----------NGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp HHHHHSHHHHHHGGGC-----------TTCEEEECHHHHHHHTCSSS
T ss_pred HHHHHHHhhhcCCccc-----------cCCEEEEeeHHHHHHHHhhh
Confidence 9988765544332100 01122499999998887543
No 82
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=2.7e-13 Score=157.56 Aligned_cols=120 Identities=21% Similarity=0.195 Sum_probs=86.7
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhc-CCCChhhhhccC----CCCceEEEECCCCCChHHHHHHHHHHhCCcEE
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVL-PMWMPEFFKGIR----RPWKGVLMVGPPGTGKTMLAKAVATECGTTFF 771 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~-pl~~pe~~~~~~----~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i 771 (863)
..|+++|+|.+|++|+|.+.+++.|.+++.. ....+..++..+ .+.+++||+||||||||++|+++|++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i 106 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 106 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEE
Confidence 5799999999999999999999999998852 111122233222 24579999999999999999999999999999
Q ss_pred EEecccccccccchhHH-------HHHHHHHHH-----HhCCCeEEEEcCCCccccc
Q psy11009 772 NVCSSTLTSKYRGESEK-------LVRLLFEMA-----RFYAPSTIFIDEIDSLCSR 816 (863)
Q Consensus 772 ~vs~s~l~~~~~Ge~e~-------~ir~lf~~A-----~~~~p~ILfIDEID~l~~~ 816 (863)
+++++++......+... .+..+|..+ ....++||||||+|.+...
T Consensus 107 ~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~ 163 (516)
T 1sxj_A 107 EQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGG 163 (516)
T ss_dssp EECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTT
T ss_pred EEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchh
Confidence 99998876543211100 011222222 1246899999999999763
No 83
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.39 E-value=5.3e-13 Score=148.34 Aligned_cols=131 Identities=24% Similarity=0.373 Sum_probs=84.9
Q ss_pred cccchHHHHHHHHHHhhcCCCChhh------------------hhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEE
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEF------------------FKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFF 771 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~------------------~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i 771 (863)
.|+|++.+++.|..++..+...... ......+..++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999887433333221 1123445678999999999999999999999999999
Q ss_pred EEeccccc-ccccchh-HHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCch--hhHHHHHHHHHHHHHhcC
Q psy11009 772 NVCSSTLT-SKYRGES-EKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESE--HEASRRVKSELLVQMDGL 840 (863)
Q Consensus 772 ~vs~s~l~-~~~~Ge~-e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~--~e~~~rv~~~LL~~lD~l 840 (863)
.+++..+. ..+.|+. ...+..++..+. ...++||||||||.+...++.... +.....+++.|+..|++.
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~ 178 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGS 178 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcc
Confidence 99998875 3555543 344555554322 235899999999999876432211 112234788999999853
No 84
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.38 E-value=2.3e-13 Score=150.68 Aligned_cols=190 Identities=16% Similarity=0.103 Sum_probs=126.7
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhH-HHHHHHHhhcccce
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSS-LNLYRSITNRGFYI 153 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~s-e~~~r~i~~~~~~l 153 (863)
..++|++ |.||||||++|+++++. +..|.+....+. ...+.|+|.. +..++.+|....+.
T Consensus 51 ~~~vll~---------GppGtGKT~la~~ia~~----~~~~~~~~~~~~------l~~~~~~g~~~~~~~~~~~~~~~~~ 111 (363)
T 3hws_A 51 KSNILLI---------GPTGSGKTLLAETLARL----LDVPFTMADATT------LTEAGYVGEDVENIIQKLLQKCDYD 111 (363)
T ss_dssp CCCEEEE---------CCTTSSHHHHHHHHHHH----TTCCEEEEEHHH------HTTCHHHHHHHTHHHHHHHHHTTTC
T ss_pred CCeEEEE---------CCCCCCHHHHHHHHHHH----cCCCEEEechHH------hcccccccccHHHHHHHHHHHhhhh
Confidence 4578888 99999999999999996 344544322211 1124578887 66778888653221
Q ss_pred eeeccCCCCcEEEEEecccccccccccch------hHhHHHHHHHHhhccCC----------CCCCeEEEEccCC-----
Q psy11009 154 EDYEVSPPGPTLAVAKMFSSLAVQKLLRG------SKTFRTLCIHKYRLLTF----------PSTPVQYSIQKGI----- 212 (863)
Q Consensus 154 ~~~~~~~~~P~IlFiDEiDal~~~R~~~~------~~~v~n~lL~~ld~~~~----------~~~~VivIaATN~----- 212 (863)
.....||||||||+|.+...|.... ..++.+.||..|++... ...++++|+|||.
T Consensus 112 ----~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~ 187 (363)
T 3hws_A 112 ----VQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICG 187 (363)
T ss_dssp ----HHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CCCCCTTSSEEEEE
T ss_pred ----HHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEec
Confidence 1334689999999999998874421 23489999999984310 0112344455554
Q ss_pred ---C----------C------------------------------C-----ccHHHhhccceEEEecCCCHHHHHHHHHH
Q psy11009 213 ---P----------W------------------------------D-----IDEALRRRLEKRIYIPLPSKAGREALLKI 244 (863)
Q Consensus 213 ---p----------~------------------------------~-----LD~AllRRFD~~I~i~lPd~~~R~~IL~~ 244 (863)
. . . ++|+|+.|||..+.+++|+.+.+.+|+..
T Consensus 188 g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 188 GAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHS
T ss_pred CCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHH
Confidence 2 1 1 78999999999999999999999999986
Q ss_pred ----Hhcc-------CCCC---CcccHHHHhh--hCCCCCHHHHHHHHHHHHHHHHHhh
Q psy11009 245 ----NLKE-------VKVD---PAVDLTHIAS--QLDGYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 245 ----~l~~-------~~l~---~dvdl~~LA~--~TeG~SGADI~~lv~~Aal~air~~ 287 (863)
++.. .... .+-.++.|+. ....+...+|++++..+...++.+.
T Consensus 268 ~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 268 PKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp STTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhc
Confidence 2221 1111 1222566775 3355667899999999887777653
No 85
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.36 E-value=1.1e-12 Score=141.48 Aligned_cols=181 Identities=12% Similarity=-0.030 Sum_probs=124.6
Q ss_pred cceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccc
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFY 152 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~ 152 (863)
.++|++ |.||||||++|+.+++. +|+.+..+.+. ....+...|..
T Consensus 39 ~~vll~---------G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~--------------------~~~~l~~~l~~--- 86 (324)
T 1hqc_A 39 EHLLLF---------GPPGLGKTTLAHVIAHELGVNLRVTSGPAIE--------------------KPGDLAAILAN--- 86 (324)
T ss_dssp CCCEEE---------CCTTCCCHHHHHHHHHHHTCCEEEECTTTCC--------------------SHHHHHHHHTT---
T ss_pred CcEEEE---------CCCCCCHHHHHHHHHHHhCCCEEEEeccccC--------------------ChHHHHHHHHH---
Confidence 468888 99999999999999883 23333333220 11223333432
Q ss_pred eeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccC-----C----------CCCCeEEEEccCCCCCcc
Q psy11009 153 IEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT-----F----------PSTPVQYSIQKGIPWDID 217 (863)
Q Consensus 153 l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~-----~----------~~~~VivIaATN~p~~LD 217 (863)
....+++|||||+|.+... ..+.|+..++... . ...++++|+|||++..++
T Consensus 87 ------~~~~~~~l~lDEi~~l~~~--------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~ 152 (324)
T 1hqc_A 87 ------SLEEGDILFIDEIHRLSRQ--------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLIT 152 (324)
T ss_dssp ------TCCTTCEEEETTTTSCCHH--------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCS
T ss_pred ------hccCCCEEEEECCcccccc--------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCC
Confidence 2356789999999988632 2344555553221 0 012589999999999999
Q ss_pred HHHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhh
Q psy11009 218 EALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQI 296 (863)
Q Consensus 218 ~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~ 296 (863)
+++++||+..+.++.|+.+++..+++.++...... .+..++.|+..+.| +..++.++++.+...+....
T Consensus 153 ~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~~--------- 222 (324)
T 1hqc_A 153 APLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVAG--------- 222 (324)
T ss_dssp CSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTTS---------
T ss_pred HHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhc---------
Confidence 99999999999999999999999999999755443 23447888999876 45788888776643332211
Q ss_pred ccCCccccCCCCCHHHHHHHHHHh
Q psy11009 297 RQIPKEELDLPVSQRDFEEALARC 320 (863)
Q Consensus 297 ~~~~~~~~~~~Vt~~Df~~AL~~v 320 (863)
...|+.+++..++...
T Consensus 223 --------~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 223 --------EEVITRERALEALAAL 238 (324)
T ss_dssp --------CSCCCHHHHHHHHHHH
T ss_pred --------CCCCCHHHHHHHHHHh
Confidence 3368888888877654
No 86
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.36 E-value=5.7e-13 Score=171.07 Aligned_cols=151 Identities=17% Similarity=0.158 Sum_probs=112.1
Q ss_pred CCCccccccchHHHHHHHHHHhhcCCCC----------hhhhhc-----------------cCCCCce--EEEECCCCCC
Q psy11009 704 PNIRWDDIAELTDAKRLLEEAVVLPMWM----------PEFFKG-----------------IRRPWKG--VLMVGPPGTG 754 (863)
Q Consensus 704 p~~~~~dLiGl~~vk~~L~e~V~~pl~~----------pe~~~~-----------------~~~p~kg--vLL~GPPGtG 754 (863)
+..+|+++.|++++|+.+.+.+.||+.+ ++.++. .|.+++| +|+|||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4579999999999999999999999844 455544 2434455 9999999999
Q ss_pred hHHHHHHHHHHh---CCcEEEEeccccc------------ccccch----hHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 755 KTMLAKAVATEC---GTTFFNVCSSTLT------------SKYRGE----SEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 755 KT~LAraIA~el---~~~~i~vs~s~l~------------~~~~Ge----~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
||+||++++.+. +.+.++++..+.. ++|.++ +++.++.+|..|+..+||+||+||+|+|++
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999876 6677777766543 567777 899999999999999999999999999999
Q ss_pred cC---CCCc--hhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 816 RR---GSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 816 ~R---~~~~--~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
++ |..+ +.....|+++++|..|+++....+ |+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~----v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN----TLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTT----CEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhccCC----eEEE-Eeccc
Confidence 84 2222 235667899999999998755433 6666 77764
No 87
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.36 E-value=2.9e-12 Score=138.37 Aligned_cols=138 Identities=21% Similarity=0.256 Sum_probs=95.6
Q ss_pred hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccccc
Q psy11009 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779 (863)
Q Consensus 700 ~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~ 779 (863)
.+++++.+|++++|.+.+++.+...+.. ....+.+..++||+||||||||++|+++++.++.+++.++++.+.
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~-------~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~ 75 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEA-------AKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE 75 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHH-------HHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHH-------HHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC
Confidence 3678899999999999999999887741 122233457899999999999999999999999999999987763
Q ss_pred ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC-----CCCC-------CC
Q psy11009 780 SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS-----SAED-------SS 847 (863)
Q Consensus 780 ~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~-----~~~~-------~~ 847 (863)
. ...+...+.. ....+++|||||||.+.. ..+..|+..++... .... ..
T Consensus 76 ~------~~~l~~~l~~-~~~~~~~l~lDEi~~l~~------------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~ 136 (324)
T 1hqc_A 76 K------PGDLAAILAN-SLEEGDILFIDEIHRLSR------------QAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 136 (324)
T ss_dssp S------HHHHHHHHTT-TCCTTCEEEETTTTSCCH------------HHHHHHHHHHHHSEEEECCSSSSSCCCEEEEC
T ss_pred C------hHHHHHHHHH-hccCCCEEEEECCccccc------------chHHHHHHHHHhhhhHHhccccccccccccCC
Confidence 2 1122222221 124688999999998853 23455666665321 1100 01
Q ss_pred CceEEEEecCCCCCCC
Q psy11009 848 KVVMVLAATNFPWEGA 863 (863)
Q Consensus 848 ~~VvVIaTTN~P~~ID 863 (863)
..+++|+|||++..++
T Consensus 137 ~~~~~i~~t~~~~~~~ 152 (324)
T 1hqc_A 137 PRFTLIGATTRPGLIT 152 (324)
T ss_dssp CCCEEEEEESCCSSCS
T ss_pred CCEEEEEeCCCcccCC
Confidence 2478999999987653
No 88
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.36 E-value=3.4e-13 Score=157.81 Aligned_cols=142 Identities=22% Similarity=0.238 Sum_probs=93.9
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccc------
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS------ 780 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~------ 780 (863)
.+++++|++++++.+.+.+.+..... ..+...+||+||||||||++|+++|..++.++..+++..+..
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~------~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g 152 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTK------SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRG 152 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSS------SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC---------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcc------cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhh
Confidence 34669999999999988764322111 125568999999999999999999999999999998876543
Q ss_pred ---cccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCC---------CCCCC
Q psy11009 781 ---KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSA---------EDSSK 848 (863)
Q Consensus 781 ---~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~---------~~~~~ 848 (863)
.|.|.....+...|..+....| ||||||||.+...+.. ..++.||..||..... .-...
T Consensus 153 ~~~~~ig~~~~~~~~~~~~a~~~~~-vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~ 223 (543)
T 3m6a_A 153 HRRTYVGAMPGRIIQGMKKAGKLNP-VFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDLS 223 (543)
T ss_dssp -----------CHHHHHHTTCSSSE-EEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBCS
T ss_pred HHHHHhccCchHHHHHHHHhhccCC-EEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeeccc
Confidence 5667777777778887765555 9999999999765321 2456777777643211 00115
Q ss_pred ceEEEEecCCCCCCC
Q psy11009 849 VVMVLAATNFPWEGA 863 (863)
Q Consensus 849 ~VvVIaTTN~P~~ID 863 (863)
.++||+|||+++.||
T Consensus 224 ~v~iI~ttN~~~~l~ 238 (543)
T 3m6a_A 224 KVLFIATANNLATIP 238 (543)
T ss_dssp SCEEEEECSSTTTSC
T ss_pred ceEEEeccCccccCC
Confidence 689999999999876
No 89
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.35 E-value=3.8e-13 Score=118.49 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHH
Q psy11009 236 AGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEE 315 (863)
Q Consensus 236 ~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~ 315 (863)
++|.+||+.|++++++.+++|++.||..|+|||||||+++|++|++.|+|+. ...|+++||..
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-----------------~~~i~~~df~~ 63 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-----------------RYVILQSDLEE 63 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-----------------CSEECHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------------cCCcCHHHHHH
Confidence 4799999999999998889999999999999999999999999999999986 45799999999
Q ss_pred HHHHhc-CCCchhhhhhc
Q psy11009 316 ALARCN-KSVAREDLENI 332 (863)
Q Consensus 316 AL~~v~-psvs~~~l~~~ 332 (863)
|+.++. ++.+++++..|
T Consensus 64 Al~~v~~~~~~~~~~~~y 81 (82)
T 2dzn_B 64 AYATQVKTDNTVDKFDFY 81 (82)
T ss_dssp HHHTTCC-----------
T ss_pred HHHHHHcCcCChHHHHhh
Confidence 999995 55777666554
No 90
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.34 E-value=3.4e-12 Score=140.45 Aligned_cols=74 Identities=24% Similarity=0.312 Sum_probs=56.5
Q ss_pred hcCCCC-ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC--cEEEEeccc
Q psy11009 701 QKNPNI-RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT--TFFNVCSST 777 (863)
Q Consensus 701 ~k~p~~-~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~--~~i~vs~s~ 777 (863)
+++++. +|++++|.+.+++.+...+ +.......+++++||+||||||||++|+++|+.++. +++.+++..
T Consensus 35 ~~~~p~~~~~~ivG~~~~~~~l~~l~-------~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 35 DALEPRQASQGMVGQLAARRAAGVVL-------EMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp TTSCBCSEETTEESCHHHHHHHHHHH-------HHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred cccCcCcchhhccChHHHHHHHHHHH-------HHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 344444 4999999999998876654 233333445689999999999999999999999974 888888776
Q ss_pred cccc
Q psy11009 778 LTSK 781 (863)
Q Consensus 778 l~~~ 781 (863)
+...
T Consensus 108 ~~~~ 111 (368)
T 3uk6_A 108 IFSL 111 (368)
T ss_dssp GSCS
T ss_pred hhhc
Confidence 4443
No 91
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.33 E-value=8.3e-12 Score=136.93 Aligned_cols=139 Identities=14% Similarity=0.091 Sum_probs=100.7
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCC---CCccHHHhhccce-EEEecCCCH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIP---WDIDEALRRRLEK-RIYIPLPSK 235 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p---~~LD~AllRRFD~-~I~i~lPd~ 235 (863)
..+|+||||||+|.+...+ ....++..++..++.... ..++.+|++||.+ +.+++++.+||.. .|++++|+.
T Consensus 128 ~~~~~vlilDEi~~l~~~~---~~~~~l~~l~~~~~~~~~-~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~ 203 (387)
T 2v1u_A 128 LRGIYIIVLDEIDFLPKRP---GGQDLLYRITRINQELGD-RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTA 203 (387)
T ss_dssp SCSEEEEEEETTTHHHHST---THHHHHHHHHHGGGCC------CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCH
T ss_pred cCCeEEEEEccHhhhcccC---CCChHHHhHhhchhhcCC-CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCH
Confidence 4569999999999997543 123444555554443321 2378999999998 7899999999986 999999999
Q ss_pred HHHHHHHHHHhcc----CCCCCcccHHHHhhhCC---CCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCC
Q psy11009 236 AGREALLKINLKE----VKVDPAVDLTHIASQLD---GYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPV 308 (863)
Q Consensus 236 ~~R~~IL~~~l~~----~~l~~dvdl~~LA~~Te---G~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~V 308 (863)
+++.+||+.++.. ..+. +-.++.++..+. | ....+.++|+.|+..+..+. ...|
T Consensus 204 ~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~-----------------~~~i 264 (387)
T 2v1u_A 204 PQLRDILETRAEEAFNPGVLD-PDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRR-----------------EERV 264 (387)
T ss_dssp HHHHHHHHHHHHHHBCTTTBC-SSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTT-----------------CSCB
T ss_pred HHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcC-----------------CCCc
Confidence 9999999998853 2222 333677887776 4 45677788888877666543 3479
Q ss_pred CHHHHHHHHHHhc
Q psy11009 309 SQRDFEEALARCN 321 (863)
Q Consensus 309 t~~Df~~AL~~v~ 321 (863)
+.+|+..|+....
T Consensus 265 ~~~~v~~a~~~~~ 277 (387)
T 2v1u_A 265 RREHVYSARAEIE 277 (387)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998764
No 92
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.33 E-value=1.3e-12 Score=126.29 Aligned_cols=112 Identities=12% Similarity=0.126 Sum_probs=80.7
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchh
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGES 786 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~ 786 (863)
+++|.+...+.+.+.+. .......+|||+||||||||++|++++... +.+|+ +++..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~----------~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~----- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQ----------QLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA----- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHH----------HHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----
T ss_pred CceeCCHHHHHHHHHHH----------HHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----
Confidence 57898998888888763 112334579999999999999999999987 78999 999877544
Q ss_pred HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 787 EKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 787 e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
......++.+. +++|||||||.+.. ..+..|+..|... ...+.+|+|||++
T Consensus 66 -~~~~~~~~~a~---~g~l~ldei~~l~~------------~~q~~Ll~~l~~~------~~~~~~I~~t~~~ 116 (145)
T 3n70_A 66 -PQLNDFIALAQ---GGTLVLSHPEHLTR------------EQQYHLVQLQSQE------HRPFRLIGIGDTS 116 (145)
T ss_dssp -SCHHHHHHHHT---TSCEEEECGGGSCH------------HHHHHHHHHHHSS------SCSSCEEEEESSC
T ss_pred -hhhhcHHHHcC---CcEEEEcChHHCCH------------HHHHHHHHHHhhc------CCCEEEEEECCcC
Confidence 12234555554 68999999998843 3556677777332 2236688999976
No 93
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.32 E-value=7.3e-13 Score=152.17 Aligned_cols=172 Identities=12% Similarity=0.097 Sum_probs=106.1
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccccee
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIE 154 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~ 154 (863)
..++|+| |.||||||++|+.+++. +..-..|.-....-=..++++ +.|.|..+.+++.+|+..
T Consensus 201 ~~~~LL~---------G~pG~GKT~la~~la~~-l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~---- 263 (468)
T 3pxg_A 201 KNNPVLI---------GEPGVGKTAIAEGLAQQ-IINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEI---- 263 (468)
T ss_dssp SCEEEEE---------SCTTTTTHHHHHHHHHH-HHSSCSCTTTSSCCEECC-------------CTTHHHHHHHH----
T ss_pred CCCeEEE---------CCCCCCHHHHHHHHHHH-HHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHH----
Confidence 3456778 99999999999999985 000011211001001122332 678999999999999854
Q ss_pred eeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhccceEEE
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRLEKRIY 229 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRFD~~I~ 229 (863)
...+|+||||| + .....+.|+..|. ...+.||+|||.++ .+|+|+.|||+. |+
T Consensus 264 ----~~~~~~iLfiD-----~-------~~~a~~~L~~~L~-----~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~-i~ 321 (468)
T 3pxg_A 264 ----RQAGNIILFID-----A-------AIDASNILKPSLA-----RGELQCIGATTLDEYRKYIEKDAALERRFQP-IQ 321 (468)
T ss_dssp ----HTCCCCEEEEC-----C---------------CCCTT-----SSSCEEEEECCTTTTHHHHTTCSHHHHSEEE-EE
T ss_pred ----HhcCCeEEEEe-----C-------chhHHHHHHHhhc-----CCCEEEEecCCHHHHHHHhhcCHHHHHhCcc-ce
Confidence 44579999999 1 1123344443332 22699999999998 699999999985 99
Q ss_pred ecCCCHHHHHHHHHHHhccC----CCC-CcccHHHHhhhCCCCCH-----HHHHHHHHHHHHHHHH
Q psy11009 230 IPLPSKAGREALLKINLKEV----KVD-PAVDLTHIASQLDGYSG-----ADITNVCRDASMMSMR 285 (863)
Q Consensus 230 i~lPd~~~R~~IL~~~l~~~----~l~-~dvdl~~LA~~TeG~SG-----ADI~~lv~~Aal~air 285 (863)
|+.|+.+++..||+.++.+. .+. .+..+..++..+.+|.+ ...-.++.+|+..+..
T Consensus 322 v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a~~~~~~ 387 (468)
T 3pxg_A 322 VDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRL 387 (468)
T ss_dssp CCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHHHHHHHh
Confidence 99999999999999888653 222 23345667766655543 4677777777655443
No 94
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.32 E-value=6.3e-12 Score=136.86 Aligned_cols=195 Identities=14% Similarity=0.012 Sum_probs=118.9
Q ss_pred cceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceee
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIED 155 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~ 155 (863)
.++|+| |.||||||++|+++++. +..|..+........ .+-.+|... +. ...+.
T Consensus 47 ~~vll~---------G~pGtGKT~la~~la~~----~~~~~~~i~~~~~~~-----~~~l~g~~~------~~--~~~~~ 100 (331)
T 2r44_A 47 GHILLE---------GVPGLAKTLSVNTLAKT----MDLDFHRIQFTPDLL-----PSDLIGTMI------YN--QHKGN 100 (331)
T ss_dssp CCEEEE---------SCCCHHHHHHHHHHHHH----TTCCEEEEECCTTCC-----HHHHHEEEE------EE--TTTTE
T ss_pred CeEEEE---------CCCCCcHHHHHHHHHHH----hCCCeEEEecCCCCC-----hhhcCCcee------ec--CCCCc
Confidence 478888 99999999999999984 222322211110000 000122110 00 01122
Q ss_pred eccC--CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccC--------CCCCCeEEEEccCCCC-----CccHHH
Q psy11009 156 YEVS--PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT--------FPSTPVQYSIQKGIPW-----DIDEAL 220 (863)
Q Consensus 156 ~~~~--~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~--------~~~~~VivIaATN~p~-----~LD~Al 220 (863)
|.+. .-..+||||||+|.+. ....+.|+..|+... ....+++||+|+|..+ .||+++
T Consensus 101 ~~~~~g~l~~~vl~iDEi~~~~--------~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~~~~l~~~l 172 (331)
T 2r44_A 101 FEVKKGPVFSNFILADEVNRSP--------AKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQ 172 (331)
T ss_dssp EEEEECTTCSSEEEEETGGGSC--------HHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSCCCCCCHHH
T ss_pred eEeccCcccccEEEEEccccCC--------HHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccCcccCCHHH
Confidence 2221 1123899999999864 234566666664210 1122688888888543 399999
Q ss_pred hhccceEEEecCCCHHHHHHHHHHHhccCCCC-----------------------CcccHHHHhhhC-------------
Q psy11009 221 RRRLEKRIYIPLPSKAGREALLKINLKEVKVD-----------------------PAVDLTHIASQL------------- 264 (863)
Q Consensus 221 lRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-----------------------~dvdl~~LA~~T------------- 264 (863)
++||+.+++|+.|+.++|.+||+.++...... ++--++.++...
T Consensus 173 ~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~ 252 (331)
T 2r44_A 173 VDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFATRFPAEYGLEA 252 (331)
T ss_dssp HTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHH
T ss_pred HhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhccccccccc
Confidence 99999999999999999999999988543211 011123333221
Q ss_pred ------CCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhc
Q psy11009 265 ------DGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCN 321 (863)
Q Consensus 265 ------eG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ 321 (863)
-|+|...+..+++.|...|.-++ ...|+.+|+..++..+.
T Consensus 253 ~~~~~~~~~s~R~~~~ll~~a~a~A~l~g-----------------~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 253 EASYILYGASTRAAINLNRVAKAMAFFNN-----------------RDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp HHHHEEECCCHHHHHHHHHHHHHHHHHTT-----------------CSBCCHHHHHHHHHHHH
T ss_pred cccccccCcChhHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHHh
Confidence 25678888888877766665543 44689999999887664
No 95
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.32 E-value=6.1e-12 Score=137.07 Aligned_cols=134 Identities=10% Similarity=-0.001 Sum_probs=93.5
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhc----cCCC------CCCeEEEEccCCCC-CccHHHhhccceEEEe
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRL----LTFP------STPVQYSIQKGIPW-DIDEALRRRLEKRIYI 230 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~----~~~~------~~~VivIaATN~p~-~LD~AllRRFD~~I~i 230 (863)
.++||||||+|.+.. ...+.|+..|+. +... ..+++||+|||..+ .+|++|++||+.++++
T Consensus 144 ~~~vl~iDEi~~l~~--------~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l 215 (350)
T 1g8p_A 144 NRGYLYIDECNLLED--------HIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEV 215 (350)
T ss_dssp TTEEEEETTGGGSCH--------HHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEEC
T ss_pred CCCEEEEeChhhCCH--------HHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEc
Confidence 478999999998853 344566665542 1111 12689999999855 8999999999999999
Q ss_pred cCC-CHHHHHHHHHHHhc-------------------------------cCCCCCcccHHHHhhhCCC---CCHHHHHHH
Q psy11009 231 PLP-SKAGREALLKINLK-------------------------------EVKVDPAVDLTHIASQLDG---YSGADITNV 275 (863)
Q Consensus 231 ~lP-d~~~R~~IL~~~l~-------------------------------~~~l~~dvdl~~LA~~TeG---~SGADI~~l 275 (863)
+.| +.+.|.+|++.++. .+.++ +-.++.|+..+.+ -+...+.++
T Consensus 216 ~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls-~~~~~~l~~~~~~~~~~~~R~~~~l 294 (350)
T 1g8p_A 216 LSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAP-NTALYDCAALCIALGSDGLRGELTL 294 (350)
T ss_dssp CCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCC-HHHHHHHHHHHHHSSSCSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHHhCCCCccHHHHH
Confidence 999 78888899876321 12222 2224455555433 266888888
Q ss_pred HHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhc
Q psy11009 276 CRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCN 321 (863)
Q Consensus 276 v~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ 321 (863)
++.|...|..+. ...|+.+|+..|+..+.
T Consensus 295 l~~a~~~A~~~~-----------------~~~v~~~~v~~a~~~~l 323 (350)
T 1g8p_A 295 LRSARALAALEG-----------------ATAVGRDHLKRVATMAL 323 (350)
T ss_dssp HHHHHHHHHHTT-----------------CSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC-----------------CCcCCHHHHHHHHHHHH
Confidence 888877776554 34699999999988664
No 96
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.31 E-value=1.6e-11 Score=123.01 Aligned_cols=130 Identities=25% Similarity=0.268 Sum_probs=91.5
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-----CCcEEE
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFN 772 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~ 772 (863)
.|.+++++..|++++|.+..++.+.+++.. . ...+++|+||||||||++|+++++.+ ...++.
T Consensus 6 ~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~----------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~ 73 (226)
T 2chg_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER----------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (226)
T ss_dssp CHHHHTSCSSGGGCCSCHHHHHHHHHHHHT----------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEE
T ss_pred hHHHhcCCCCHHHHcCcHHHHHHHHHHHhC----------C--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEE
Confidence 578899999999999999999999987741 1 22359999999999999999999986 456888
Q ss_pred EecccccccccchhHHHHHHHHHHHH-----hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCC
Q psy11009 773 VCSSTLTSKYRGESEKLVRLLFEMAR-----FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSS 847 (863)
Q Consensus 773 vs~s~l~~~~~Ge~e~~ir~lf~~A~-----~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~ 847 (863)
++++..... ......+..... ...+.+|||||+|.+... ....|+..++.. .
T Consensus 74 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~------------~~~~l~~~l~~~------~ 130 (226)
T 2chg_A 74 MNASDERGI-----DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTAD------------AQAALRRTMEMY------S 130 (226)
T ss_dssp EETTCTTCH-----HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHH------------HHHHHHHHHHHT------T
T ss_pred eccccccCh-----HHHHHHHHHHhcccCCCccCceEEEEeChhhcCHH------------HHHHHHHHHHhc------C
Confidence 887654321 111111222222 246889999999988541 345566666543 2
Q ss_pred CceEEEEecCCCCCC
Q psy11009 848 KVVMVLAATNFPWEG 862 (863)
Q Consensus 848 ~~VvVIaTTN~P~~I 862 (863)
..+.+|+|||.+..+
T Consensus 131 ~~~~~i~~~~~~~~~ 145 (226)
T 2chg_A 131 KSCRFILSCNYVSRI 145 (226)
T ss_dssp TTEEEEEEESCGGGS
T ss_pred CCCeEEEEeCChhhc
Confidence 246788889987654
No 97
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.29 E-value=4.6e-12 Score=144.51 Aligned_cols=134 Identities=12% Similarity=0.068 Sum_probs=98.9
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCC---ccHHHhhccc--eEEEecCCCHH
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWD---IDEALRRRLE--KRIYIPLPSKA 236 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~---LD~AllRRFD--~~I~i~lPd~~ 236 (863)
.|+||||||+|.+...+ .....|+..++.+...+ ..+||++.|.|.. +++++++||+ ..+.+++|+.+
T Consensus 194 ~~~vL~IDEi~~l~~~~------~~q~~l~~~l~~l~~~~-~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e 266 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKT------GVQTELFHTFNELHDSG-KQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEE 266 (440)
T ss_dssp TCSEEEEECGGGGSSCH------HHHHHHHHHHHHHHTTT-CEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHH
T ss_pred CCCEEEEeCcccccCCh------HHHHHHHHHHHHHHHCC-CeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHH
Confidence 68899999999997643 12334444444332222 4566655555665 8999999997 89999999999
Q ss_pred HHHHHHHHHhcc--CCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHH
Q psy11009 237 GREALLKINLKE--VKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFE 314 (863)
Q Consensus 237 ~R~~IL~~~l~~--~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~ 314 (863)
+|.+||+.++.. +.+.++ .++.||..+.| +..++.+++..+...+...+ ..|+.+++.
T Consensus 267 ~r~~iL~~~~~~~~~~i~~e-~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~~------------------~~It~~~~~ 326 (440)
T 2z4s_A 267 TRKSIARKMLEIEHGELPEE-VLNFVAENVDD-NLRRLRGAIIKLLVYKETTG------------------KEVDLKEAI 326 (440)
T ss_dssp HHHHHHHHHHHHHTCCCCTT-HHHHHHHHCCS-CHHHHHHHHHHHHHHHHHSS------------------SCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhC------------------CCCCHHHHH
Confidence 999999999853 334433 37889999975 89999999998877665432 269999999
Q ss_pred HHHHHhcC
Q psy11009 315 EALARCNK 322 (863)
Q Consensus 315 ~AL~~v~p 322 (863)
+++....+
T Consensus 327 ~~l~~~~~ 334 (440)
T 2z4s_A 327 LLLKDFIK 334 (440)
T ss_dssp HHTSTTTC
T ss_pred HHHHHHhh
Confidence 99887664
No 98
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.29 E-value=7.9e-13 Score=127.55 Aligned_cols=112 Identities=12% Similarity=0.163 Sum_probs=80.7
Q ss_pred cccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccccchhHHH
Q psy11009 710 DIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKL 789 (863)
Q Consensus 710 dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~Ge~e~~ 789 (863)
+++|.+...+.+.+.+... .....++||+||||||||++|++++...+ +|+.+++..+...+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~----------~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAA----------AKRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHH----------HTCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------
Confidence 5789999988888877411 12335799999999999999999999888 99999998875433
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 790 VRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 790 ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
...+++.+. +++|||||||.+.. ..+..|+..|+... ...+.+|+|||++
T Consensus 67 ~~~~~~~a~---~~~l~lDei~~l~~------------~~q~~Ll~~l~~~~-----~~~~~iI~~tn~~ 116 (143)
T 3co5_A 67 PMELLQKAE---GGVLYVGDIAQYSR------------NIQTGITFIIGKAE-----RCRVRVIASCSYA 116 (143)
T ss_dssp HHHHHHHTT---TSEEEEEECTTCCH------------HHHHHHHHHHHHHT-----TTTCEEEEEEEEC
T ss_pred hhhHHHhCC---CCeEEEeChHHCCH------------HHHHHHHHHHHhCC-----CCCEEEEEecCCC
Confidence 345566554 68999999999844 24455666665432 2347788999876
No 99
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.29 E-value=7.3e-12 Score=128.11 Aligned_cols=132 Identities=11% Similarity=0.001 Sum_probs=93.2
Q ss_pred CCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCe-EEEEccCCCC---CccHHHhhccc--eEEEecCCC
Q psy11009 161 PGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPV-QYSIQKGIPW---DIDEALRRRLE--KRIYIPLPS 234 (863)
Q Consensus 161 ~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~V-ivIaATN~p~---~LD~AllRRFD--~~I~i~lPd 234 (863)
..|+||||||+|.+.... .....|+..++...... .+ +|+++++.+. .+++++.+||+ ..|+++.|+
T Consensus 103 ~~~~vliiDe~~~~~~~~------~~~~~l~~~l~~~~~~~-~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~ 175 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHP------LWEEAIFDLYNRVAEQK-RGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMM 175 (242)
T ss_dssp GGSSEEEEETGGGGTTCH------HHHHHHHHHHHHHHHHC-SCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCC
T ss_pred cCCCEEEEeccccccCCH------HHHHHHHHHHHHHHHcC-CCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCC
Confidence 457899999999986432 11233444443322222 34 5555554454 56799999997 999999999
Q ss_pred HHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHH
Q psy11009 235 KAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDF 313 (863)
Q Consensus 235 ~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df 313 (863)
.+++.++++.++....+. .+..++.|+..+.| +..++.+++..+...+.... ..|+.+|+
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~~------------------~~It~~~v 236 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVHQ------------------RKLTIPFV 236 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHT------------------CCCCHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHhC------------------CCCcHHHH
Confidence 999999999999644433 23346788998876 88999999998877775442 36999999
Q ss_pred HHHHH
Q psy11009 314 EEALA 318 (863)
Q Consensus 314 ~~AL~ 318 (863)
..++.
T Consensus 237 ~~~l~ 241 (242)
T 3bos_A 237 KEMLR 241 (242)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 88764
No 100
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.29 E-value=6.3e-13 Score=130.26 Aligned_cols=144 Identities=13% Similarity=0.101 Sum_probs=91.9
Q ss_pred cceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHH--HhhhhhHHHHHHHHhhcccce
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITL--ALTVGSSLNLYRSITNRGFYI 153 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~--~~~vg~se~~~r~i~~~~~~l 153 (863)
.++|++ |.||||||++++.+++. +.....|......--..+.+.... ..+.|..+..++.++...
T Consensus 44 ~~~ll~---------G~~G~GKT~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 110 (195)
T 1jbk_A 44 NNPVLI---------GEPGVGKTAIVEGLAQR-IINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDL--- 110 (195)
T ss_dssp CEEEEE---------CCTTSCHHHHHHHHHHH-HHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHH---
T ss_pred CceEEE---------CCCCCCHHHHHHHHHHH-HHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHH---
Confidence 457888 99999999999999885 000000100000000111121112 345677788888888642
Q ss_pred eeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHhhccceEE
Q psy11009 154 EDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALRRRLEKRI 228 (863)
Q Consensus 154 ~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~AllRRFD~~I 228 (863)
....+|+||||||+|.+...+.......+.+.+...++. .++.+|++||.++ .+|+++.+||+ .|
T Consensus 111 ----~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~l~~r~~-~i 180 (195)
T 1jbk_A 111 ----AKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-----GELHCVGATTLDEYRQYIEKDAALERRFQ-KV 180 (195)
T ss_dssp ----HHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-----TSCCEEEEECHHHHHHHTTTCHHHHTTEE-EE
T ss_pred ----hhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-----CCeEEEEeCCHHHHHHHHhcCHHHHHHhc-ee
Confidence 135679999999999998765433333333444433321 2688999999987 79999999999 69
Q ss_pred EecCCCHHHHHHHH
Q psy11009 229 YIPLPSKAGREALL 242 (863)
Q Consensus 229 ~i~lPd~~~R~~IL 242 (863)
+|+.|+.++|.+||
T Consensus 181 ~~~~p~~~~~~~il 194 (195)
T 1jbk_A 181 FVAEPSVEDTIAIL 194 (195)
T ss_dssp ECCCCCHHHHHTTC
T ss_pred ecCCCCHHHHHHHh
Confidence 99999999999876
No 101
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.28 E-value=2.2e-11 Score=122.02 Aligned_cols=124 Identities=10% Similarity=0.022 Sum_probs=90.1
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
...|+||||||+|.+... ..+.|+..++... .++.+|++||.++.+++++.+||. .++++.|+.+++.
T Consensus 100 ~~~~~vliiDe~~~l~~~--------~~~~l~~~l~~~~---~~~~~i~~~~~~~~~~~~l~~r~~-~i~~~~~~~~~~~ 167 (226)
T 2chg_A 100 GAPFKIIFLDEADALTAD--------AQAALRRTMEMYS---KSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMK 167 (226)
T ss_dssp TCSCEEEEEETGGGSCHH--------HHHHHHHHHHHTT---TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHH
T ss_pred ccCceEEEEeChhhcCHH--------HHHHHHHHHHhcC---CCCeEEEEeCChhhcCHHHHHhCc-eeecCCCCHHHHH
Confidence 467999999999998542 2445655565432 268889999999999999999998 8999999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALA 318 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~ 318 (863)
.+++.++...... .+-.+..|+..+.| ....+.+++..++..+ ..|+.+|+..++.
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~----------------------~~I~~~~v~~~~~ 224 (226)
T 2chg_A 168 KRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG----------------------EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC----------------------SCBCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC----------------------ceecHHHHHHHhc
Confidence 9999988643333 23346778877765 4444455544443221 2789999988875
No 102
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.28 E-value=3.3e-11 Score=121.99 Aligned_cols=139 Identities=14% Similarity=0.079 Sum_probs=101.3
Q ss_pred HHHHHHhhcccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHH
Q psy11009 141 NLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEAL 220 (863)
Q Consensus 141 ~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~Al 220 (863)
..++.++..... .....+|+||||||+|.+. ....+.|+..++.. ..++.+|++||.++.+++++
T Consensus 109 ~~~~~~~~~~~~----~~~~~~~~vlviDe~~~l~--------~~~~~~l~~~l~~~---~~~~~~i~~t~~~~~~~~~l 173 (250)
T 1njg_A 109 EDTRDLLDNVQY----APARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTI 173 (250)
T ss_dssp HHHHHHHHSCCC----SCSSSSSEEEEEETGGGSC--------HHHHHHHHHHHHSC---CTTEEEEEEESCGGGSCHHH
T ss_pred HHHHHHHHHhhh----chhcCCceEEEEECccccc--------HHHHHHHHHHHhcC---CCceEEEEEeCChHhCCHHH
Confidence 345566654211 1134578999999999873 23456677766543 23789999999999999999
Q ss_pred hhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccC
Q psy11009 221 RRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQI 299 (863)
Q Consensus 221 lRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~ 299 (863)
++|+ ..|++++|+.+++.++++.++...... .+-.++.|+..+.| ...++.++|..|+.. .
T Consensus 174 ~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~~~~~~~----~------------ 235 (250)
T 1njg_A 174 LSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAIAS----G------------ 235 (250)
T ss_dssp HTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHTT----T------------
T ss_pred HHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhc----c------------
Confidence 9996 689999999999999999998654333 23347889999987 888888888776321 1
Q ss_pred CccccCCCCCHHHHHHHH
Q psy11009 300 PKEELDLPVSQRDFEEAL 317 (863)
Q Consensus 300 ~~~~~~~~Vt~~Df~~AL 317 (863)
...|+.+|+.+++
T Consensus 236 -----~~~i~~~~v~~~~ 248 (250)
T 1njg_A 236 -----DGQVSTQAVSAML 248 (250)
T ss_dssp -----TSSBCHHHHHHHS
T ss_pred -----CceecHHHHHHHh
Confidence 2268999988765
No 103
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.27 E-value=3e-12 Score=137.45 Aligned_cols=117 Identities=6% Similarity=0.069 Sum_probs=88.4
Q ss_pred cEEEEEecccccccccccchhHhHHHHHHHHhhccCCC--------CCCeEEEEccCC----------------------
Q psy11009 163 PTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFP--------STPVQYSIQKGI---------------------- 212 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~--------~~~VivIaATN~---------------------- 212 (863)
.+||||||+|.+. ..+.+.|+..|+.-... -.++++|+|||.
T Consensus 120 ~~vl~lDEi~~l~--------~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~ 191 (311)
T 4fcw_A 120 YSVILFDAIEKAH--------PDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKGWPYERIRDEV 191 (311)
T ss_dssp SEEEEEETGGGSC--------HHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEESTTHHHHHTTTTSCCCSSTHHHHT
T ss_pred CeEEEEeChhhcC--------HHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecccCHHHHHhhhcccccHHHHHHHH
Confidence 4899999999884 35667777777432210 126889999999
Q ss_pred ----CCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccC-------CCC---CcccHHHHhhhCC--CCCHHHHHHHH
Q psy11009 213 ----PWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEV-------KVD---PAVDLTHIASQLD--GYSGADITNVC 276 (863)
Q Consensus 213 ----p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~-------~l~---~dvdl~~LA~~Te--G~SGADI~~lv 276 (863)
...++++|+.||+..+.+++|+.+++..|++.++.+. ... .+-.++.|+...- ..+..+|+++|
T Consensus 192 ~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i 271 (311)
T 4fcw_A 192 FKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVI 271 (311)
T ss_dssp HHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEECHHHHHHHHHHSCBTTTBTTTHHHHH
T ss_pred HHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEeCHHHHHHHHHhCCCccCCchhHHHHH
Confidence 5688999999999999999999999999999988542 111 1223566777654 67889999999
Q ss_pred HHHHHHHHHhh
Q psy11009 277 RDASMMSMRRK 287 (863)
Q Consensus 277 ~~Aal~air~~ 287 (863)
..+...++.+.
T Consensus 272 ~~~~~~~~~~~ 282 (311)
T 4fcw_A 272 QRELETPLAQK 282 (311)
T ss_dssp HHHTHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99877766654
No 104
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.27 E-value=1.3e-11 Score=141.08 Aligned_cols=112 Identities=21% Similarity=0.301 Sum_probs=82.9
Q ss_pred hhhhhcCCCCccccccchHHHH---HHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAK---RLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk---~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
..|.+++++.+|++++|++.++ +.|...+. . +. ..++||+||||||||++|+++|+.++.+|+.+
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~----------~-~~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIE----------A-GH-LHSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHH----------H-TC-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHH----------c-CC-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 4688899999999999999998 67777663 1 11 25899999999999999999999999999999
Q ss_pred ecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc
Q psy11009 774 CSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG 839 (863)
Q Consensus 774 s~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~ 839 (863)
++.... ...++.++..+. ...++||||||||.+... .+..||..|+.
T Consensus 82 ~a~~~~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~------------~q~~LL~~le~ 132 (447)
T 3pvs_A 82 SAVTSG-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKS------------QQDAFLPHIED 132 (447)
T ss_dssp ETTTCC-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT
T ss_pred EeccCC-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH------------HHHHHHHHHhc
Confidence 875532 233444554443 346899999999998542 34567777753
No 105
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.25 E-value=7.9e-12 Score=143.60 Aligned_cols=125 Identities=22% Similarity=0.320 Sum_probs=88.9
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---------- 766 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---------- 766 (863)
..|.+++++.++++|+|.+..++.+.+.+. +....++||+||||||||++|+++|..+
T Consensus 168 ~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~------------r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~ 235 (468)
T 3pxg_A 168 RDLTAIAKEDSLDPVIGRSKEIQRVIEVLS------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (468)
T ss_dssp CBHHHHTTSSCSCCCCCCHHHHHHHHHHHH------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred HHHHHHHhcCCCCCccCcHHHHHHHHHHHh------------ccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 456778889999999999999999988763 1234689999999999999999999997
Q ss_pred CCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCC
Q psy11009 767 GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDS 846 (863)
Q Consensus 767 ~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~ 846 (863)
+.+++.++++ .+|.|+.+..++.+|..+....++||||| . . ....+.|+..|+
T Consensus 236 ~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD------~---~-------~~a~~~L~~~L~-------- 288 (468)
T 3pxg_A 236 DKRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID------A---A-------IDASNILKPSLA-------- 288 (468)
T ss_dssp SCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C------------------CCCTT--------
T ss_pred CCeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe------C---c-------hhHHHHHHHhhc--------
Confidence 7889998887 67888888888999999988889999999 1 1 113334443332
Q ss_pred CCceEEEEecCCCC
Q psy11009 847 SKVVMVLAATNFPW 860 (863)
Q Consensus 847 ~~~VvVIaTTN~P~ 860 (863)
.+.+.||+|||.++
T Consensus 289 ~g~v~vI~at~~~e 302 (468)
T 3pxg_A 289 RGELQCIGATTLDE 302 (468)
T ss_dssp SSSCEEEEECCTTT
T ss_pred CCCEEEEecCCHHH
Confidence 23488999999886
No 106
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.24 E-value=1.4e-11 Score=133.89 Aligned_cols=193 Identities=12% Similarity=0.024 Sum_probs=119.2
Q ss_pred cceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceee
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIED 155 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~ 155 (863)
.++++| |.||||||++|+++++.-.- -..+.++.. +......+++.........|..
T Consensus 38 ~~lll~---------G~~GtGKT~la~~i~~~~~~-~~~~~~~i~-------~~~~~~~~~~~~~~~~~~~~~~------ 94 (324)
T 1l8q_A 38 NPIFIY---------GSVGTGKTHLLQAAGNEAKK-RGYRVIYSS-------ADDFAQAMVEHLKKGTINEFRN------ 94 (324)
T ss_dssp SSEEEE---------CSSSSSHHHHHHHHHHHHHH-TTCCEEEEE-------HHHHHHHHHHHHHHTCHHHHHH------
T ss_pred CeEEEE---------CCCCCcHHHHHHHHHHHHHH-CCCEEEEEE-------HHHHHHHHHHHHHcCcHHHHHH------
Confidence 467888 99999999999999974100 012222211 1111222233322221112211
Q ss_pred eccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC---CccHHHhhccc--eEEEe
Q psy11009 156 YEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW---DIDEALRRRLE--KRIYI 230 (863)
Q Consensus 156 ~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~---~LD~AllRRFD--~~I~i 230 (863)
....|+||||||++.+...+. ....|+..++.....+ ..+||+++|.|+ .+|+++++||+ ..+++
T Consensus 95 ---~~~~~~vL~iDEi~~l~~~~~------~~~~l~~~l~~~~~~~-~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l 164 (324)
T 1l8q_A 95 ---MYKSVDLLLLDDVQFLSGKER------TQIEFFHIFNTLYLLE-KQIILASDRHPQKLDGVSDRLVSRFEGGILVEI 164 (324)
T ss_dssp ---HHHTCSEEEEECGGGGTTCHH------HHHHHHHHHHHHHHTT-CEEEEEESSCGGGCTTSCHHHHHHHHTSEEEEC
T ss_pred ---HhcCCCEEEEcCcccccCChH------HHHHHHHHHHHHHHCC-CeEEEEecCChHHHHHhhhHhhhcccCceEEEe
Confidence 112378999999999875431 2233444433322222 467777787777 68999999997 78999
Q ss_pred cCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHH---HHHhhhcCCChhhhccCCccccCC
Q psy11009 231 PLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMM---SMRRKIIGLTPEQIRQIPKEELDL 306 (863)
Q Consensus 231 ~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~---air~~~~~~~~~~~~~~~~~~~~~ 306 (863)
++ +.++|..||+.++....+. ++..++.|+..+ -...++.+++..+... +++-. ...
T Consensus 165 ~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~--g~~r~l~~~l~~~~~~~~~~l~~~----------------~~~ 225 (324)
T 1l8q_A 165 EL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT--KNVREIEGKIKLIKLKGFEGLERK----------------ERK 225 (324)
T ss_dssp CC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC--SSHHHHHHHHHHHHHHCHHHHHHH----------------HHH
T ss_pred CC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC--CCHHHHHHHHHHHHHcCHHHhccc----------------ccc
Confidence 99 9999999999999644433 233478899999 4788888888877554 11100 022
Q ss_pred CC-CHHHHHHHHHHh
Q psy11009 307 PV-SQRDFEEALARC 320 (863)
Q Consensus 307 ~V-t~~Df~~AL~~v 320 (863)
.| +.+++.+++...
T Consensus 226 ~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 226 ERDKLMQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 57 788888887644
No 107
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.24 E-value=6.9e-12 Score=154.07 Aligned_cols=144 Identities=20% Similarity=0.334 Sum_probs=94.7
Q ss_pred HHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-----
Q psy11009 692 VEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC----- 766 (863)
Q Consensus 692 ~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el----- 766 (863)
.+.....|++++++.+|++++|.++..+.+.+.+. ....+++||+||||||||++|+++|..+
T Consensus 153 l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~------------~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~ 220 (854)
T 1qvr_A 153 LEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILL------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDV 220 (854)
T ss_dssp HHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHH------------CSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCC
Confidence 44555677888889999999999999888888662 1234589999999999999999999998
Q ss_pred -----CCcEEEEeccccc--ccccchhHHHHHHHHHHHHhC-CCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh
Q psy11009 767 -----GTTFFNVCSSTLT--SKYRGESEKLVRLLFEMARFY-APSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 767 -----~~~~i~vs~s~l~--~~~~Ge~e~~ir~lf~~A~~~-~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD 838 (863)
+.+++.++++.+. .++.|+.+..++.++..+... .++||||||+|.+.+.++..+ ...+.+.|...++
T Consensus 221 p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g----~~~~~~~L~~~l~ 296 (854)
T 1qvr_A 221 PEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG----AVDAGNMLKPALA 296 (854)
T ss_dssp CTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-----------------------HHHHH
T ss_pred chhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc----hHHHHHHHHHHHh
Confidence 8899999998886 568888999999999988765 689999999999987643322 1233444555553
Q ss_pred cCCCCCCCCCceEEEEecCCC
Q psy11009 839 GLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 839 ~l~~~~~~~~~VvVIaTTN~P 859 (863)
. ..+.+|+|||.+
T Consensus 297 ~--------~~i~~I~at~~~ 309 (854)
T 1qvr_A 297 R--------GELRLIGATTLD 309 (854)
T ss_dssp T--------TCCCEEEEECHH
T ss_pred C--------CCeEEEEecCch
Confidence 2 236678888765
No 108
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.23 E-value=3.3e-12 Score=150.90 Aligned_cols=203 Identities=12% Similarity=0.029 Sum_probs=118.9
Q ss_pred ceeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccc
Q psy11009 72 KAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGF 151 (863)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~ 151 (863)
++..+.+|++ |.||||||++|+++++. .|--....|+.+. ..|.....++..+....
T Consensus 324 ~r~~~~vLL~---------GppGtGKT~LAr~la~~------~~r~~~~~~~~~~--------~~~l~~~~~~~~~~g~~ 380 (595)
T 3f9v_A 324 IRGDIHILII---------GDPGTAKSQMLQFISRV------APRAVYTTGKGST--------AAGLTAAVVREKGTGEY 380 (595)
T ss_dssp ECCSCCEEEE---------ESSCCTHHHHHHSSSTT------CSCEECCCTTCST--------TTTSEEECSSGGGTSSC
T ss_pred cCCCcceEEE---------CCCchHHHHHHHHHHHh------CCCceecCCCccc--------cccccceeeeccccccc
Confidence 3344478888 99999999999999996 2211111222100 01111111111122111
Q ss_pred ceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccC----------CCCCCeEEEEccCCCC-------
Q psy11009 152 YIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT----------FPSTPVQYSIQKGIPW------- 214 (863)
Q Consensus 152 ~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~----------~~~~~VivIaATN~p~------- 214 (863)
....-....+..+||||||+|.+.. ...+.|+..|+.-. ....++.||||||.++
T Consensus 381 ~~~~G~l~~A~~gil~IDEid~l~~--------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~ 452 (595)
T 3f9v_A 381 YLEAGALVLADGGIAVIDEIDKMRD--------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISER 452 (595)
T ss_dssp SEEECHHHHHSSSEECCTTTTCCCS--------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTS
T ss_pred cccCCeeEecCCCcEEeehhhhCCH--------hHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCccc
Confidence 1110000111246999999998853 34566777774211 1123789999999987
Q ss_pred ------CccHHHhhccce-EEEecCCCHHHHHHHHHHHhccCCCC--------------------------CcccHHHHh
Q psy11009 215 ------DIDEALRRRLEK-RIYIPLPSKAGREALLKINLKEVKVD--------------------------PAVDLTHIA 261 (863)
Q Consensus 215 ------~LD~AllRRFD~-~I~i~lPd~~~R~~IL~~~l~~~~l~--------------------------~dvdl~~LA 261 (863)
.|++|+++|||. .+..+.|+.+ ...|.++.+...... ++...+.|+
T Consensus 453 ~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~ 531 (595)
T 3f9v_A 453 PVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKITSEAKNLIT 531 (595)
T ss_dssp CSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHH
T ss_pred CchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 999999999994 5666788888 888888877543210 001112222
Q ss_pred hh--------------CCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCC
Q psy11009 262 SQ--------------LDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKS 323 (863)
Q Consensus 262 ~~--------------TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ps 323 (863)
.. +-+.|...++.+++.|...|..+. ...|+.+|+.+|+.-+..+
T Consensus 532 ~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~-----------------~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 532 DFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL-----------------KAEVTREDAERAINIMRLF 590 (595)
T ss_dssp HHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS-----------------SCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC-----------------cCCCCHHHHHHHHHHHHHH
Confidence 22 336677777777776655554433 4578999999988765543
No 109
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.23 E-value=1.4e-11 Score=134.27 Aligned_cols=132 Identities=24% Similarity=0.278 Sum_probs=90.6
Q ss_pred HHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC------C
Q psy11009 695 LERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG------T 768 (863)
Q Consensus 695 ~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~------~ 768 (863)
....|.++|++.+|++++|.+++++.+..++.. +. ..++||+||||||||++|+++|+.++ .
T Consensus 23 ~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~ 90 (353)
T 1sxj_D 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-----------AN-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKS 90 (353)
T ss_dssp ---CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-----------TT-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTT
T ss_pred cCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhc-----------CC-CCEEEEECCCCCCHHHHHHHHHHHhCCCccccc
Confidence 345799999999999999999999999887731 11 23599999999999999999999864 4
Q ss_pred cEEEEecccccccccchhHHHHHHHH-HHHH---------------hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHH
Q psy11009 769 TFFNVCSSTLTSKYRGESEKLVRLLF-EMAR---------------FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSE 832 (863)
Q Consensus 769 ~~i~vs~s~l~~~~~Ge~e~~ir~lf-~~A~---------------~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~ 832 (863)
.++.+++++.... ..++..+ .... ...+.||||||+|.+.. ..++.
T Consensus 91 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~------------~~~~~ 152 (353)
T 1sxj_D 91 RILELNASDERGI------SIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA------------DAQSA 152 (353)
T ss_dssp SEEEECSSSCCCH------HHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH------------HHHHH
T ss_pred ceEEEccccccch------HHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH------------HHHHH
Confidence 6888887764211 1111111 1111 12456999999998854 23466
Q ss_pred HHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 833 LLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 833 LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
|+..|+... ..+.+|++||+|..+
T Consensus 153 Ll~~le~~~------~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 153 LRRTMETYS------GVTRFCLICNYVTRI 176 (353)
T ss_dssp HHHHHHHTT------TTEEEEEEESCGGGS
T ss_pred HHHHHHhcC------CCceEEEEeCchhhC
Confidence 777776532 235667788888755
No 110
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.22 E-value=5.5e-12 Score=144.20 Aligned_cols=186 Identities=11% Similarity=0.060 Sum_probs=122.2
Q ss_pred ceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeee
Q psy11009 77 GNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDY 156 (863)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~ 156 (863)
.+|+| |.||||||++|+.+++. +..+..... .++.....++.+|..+....
T Consensus 52 ~vLL~---------GppGtGKTtlAr~ia~~----~~~~f~~l~--------------a~~~~~~~ir~~~~~a~~~~-- 102 (447)
T 3pvs_A 52 SMILW---------GPPGTGKTTLAEVIARY----ANADVERIS--------------AVTSGVKEIREAIERARQNR-- 102 (447)
T ss_dssp EEEEE---------CSTTSSHHHHHHHHHHH----TTCEEEEEE--------------TTTCCHHHHHHHHHHHHHHH--
T ss_pred EEEEE---------CCCCCcHHHHHHHHHHH----hCCCeEEEE--------------eccCCHHHHHHHHHHHHHhh--
Confidence 57888 99999999999999985 222211111 12333445666666543221
Q ss_pred ccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEcc--CCCCCccHHHhhccceEEEecCCC
Q psy11009 157 EVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQK--GIPWDIDEALRRRLEKRIYIPLPS 234 (863)
Q Consensus 157 ~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaAT--N~p~~LD~AllRRFD~~I~i~lPd 234 (863)
....++||||||+|.+... ..+.||..|+. ..|++|+|| |....+++++++||. .+.++.|+
T Consensus 103 --~~~~~~iLfIDEI~~l~~~--------~q~~LL~~le~-----~~v~lI~att~n~~~~l~~aL~sR~~-v~~l~~l~ 166 (447)
T 3pvs_A 103 --NAGRRTILFVDEVHRFNKS--------QQDAFLPHIED-----GTITFIGATTENPSFELNSALLSRAR-VYLLKSLS 166 (447)
T ss_dssp --HTTCCEEEEEETTTCC--------------CCHHHHHT-----TSCEEEEEESSCGGGSSCHHHHTTEE-EEECCCCC
T ss_pred --hcCCCcEEEEeChhhhCHH--------HHHHHHHHHhc-----CceEEEecCCCCcccccCHHHhCcee-EEeeCCcC
Confidence 2456899999999998542 23456666653 257888877 556689999999998 67799999
Q ss_pred HHHHHHHHHHHhccCC-------CC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCC
Q psy11009 235 KAGREALLKINLKEVK-------VD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDL 306 (863)
Q Consensus 235 ~~~R~~IL~~~l~~~~-------l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~ 306 (863)
.+++..|++.++.... +. .+-.++.|+..+.| +..++.+++..++..+.... ....
T Consensus 167 ~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~~---------------~~~~ 230 (447)
T 3pvs_A 167 TEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVDD---------------SGKR 230 (447)
T ss_dssp HHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBCT---------------TSCE
T ss_pred HHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhccccc---------------CCCC
Confidence 9999999999996521 11 22346778888665 66777777776654432110 0123
Q ss_pred CCCHHHHHHHHHHhcCC
Q psy11009 307 PVSQRDFEEALARCNKS 323 (863)
Q Consensus 307 ~Vt~~Df~~AL~~v~ps 323 (863)
.||.+++.+++.+....
T Consensus 231 ~It~e~v~~~l~~~~~~ 247 (447)
T 3pvs_A 231 VLKPELLTEIAGERSAR 247 (447)
T ss_dssp ECCHHHHHHHHTCCCCC
T ss_pred ccCHHHHHHHHhhhhhc
Confidence 69999999988765443
No 111
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.21 E-value=3.8e-11 Score=130.40 Aligned_cols=134 Identities=19% Similarity=0.267 Sum_probs=85.1
Q ss_pred CCCCcccccc-c--hHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecc
Q psy11009 703 NPNIRWDDIA-E--LTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSS 776 (863)
Q Consensus 703 ~p~~~~~dLi-G--l~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s 776 (863)
.|..+|++++ | ...+...+...+.. .+..+.+++|+||||||||++|+++++.+ +.+++++++.
T Consensus 5 ~~~~~f~~fv~g~~~~~a~~~~~~~~~~----------~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~ 74 (324)
T 1l8q_A 5 NPKYTLENFIVGEGNRLAYEVVKEALEN----------LGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSAD 74 (324)
T ss_dssp CTTCCSSSCCCCTTTHHHHHHHHHHHHT----------TTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCCCcccCCCCCcHHHHHHHHHHHHhC----------cCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHH
Confidence 4566889987 4 44555555554432 22345689999999999999999999998 8999999998
Q ss_pred cccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEec
Q psy11009 777 TLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAAT 856 (863)
Q Consensus 777 ~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTT 856 (863)
++...+.+.........|.... ..+++|||||++.+..++ ..+..|+..++.+... +..+|++++
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~-~~~~vL~iDEi~~l~~~~----------~~~~~l~~~l~~~~~~----~~~iii~~~ 139 (324)
T 1l8q_A 75 DFAQAMVEHLKKGTINEFRNMY-KSVDLLLLDDVQFLSGKE----------RTQIEFFHIFNTLYLL----EKQIILASD 139 (324)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH-HTCSEEEEECGGGGTTCH----------HHHHHHHHHHHHHHHT----TCEEEEEES
T ss_pred HHHHHHHHHHHcCcHHHHHHHh-cCCCEEEEcCcccccCCh----------HHHHHHHHHHHHHHHC----CCeEEEEec
Confidence 8765554433222222222222 348899999999986531 1233344444332221 225677777
Q ss_pred CCCCC
Q psy11009 857 NFPWE 861 (863)
Q Consensus 857 N~P~~ 861 (863)
+.|+.
T Consensus 140 ~~~~~ 144 (324)
T 1l8q_A 140 RHPQK 144 (324)
T ss_dssp SCGGG
T ss_pred CChHH
Confidence 77663
No 112
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.20 E-value=1.4e-11 Score=132.01 Aligned_cols=134 Identities=23% Similarity=0.242 Sum_probs=91.5
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-----CCcEE
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFF 771 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i 771 (863)
..|.++|++.+|++++|.+.+++.+..++.. +.. .++||+||||||||++|+++++.+ +.+++
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 72 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFI 72 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCE
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeE
Confidence 3689999999999999999999999886631 222 259999999999999999999996 44688
Q ss_pred EEecccccccccchhHHHHHHHHHHHH--hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCc
Q psy11009 772 NVCSSTLTSKYRGESEKLVRLLFEMAR--FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKV 849 (863)
Q Consensus 772 ~vs~s~l~~~~~Ge~e~~ir~lf~~A~--~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~ 849 (863)
.+++++..+. ......+........ ...+.||||||+|.+.. ...+.|+..++. ....
T Consensus 73 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~------~~~~ 132 (319)
T 2chq_A 73 EMNASDERGI--DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA------------DAQAALRRTMEM------YSKS 132 (319)
T ss_dssp EEETTSTTCT--TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH------------HHHHTTGGGTSS------SSSS
T ss_pred EEeCccccCh--HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH------------HHHHHHHHHHHh------cCCC
Confidence 8888764321 111111222211110 13478999999998843 234556555543 2345
Q ss_pred eEEEEecCCCCCC
Q psy11009 850 VMVLAATNFPWEG 862 (863)
Q Consensus 850 VvVIaTTN~P~~I 862 (863)
+.+|++||.+..+
T Consensus 133 ~~~i~~~~~~~~l 145 (319)
T 2chq_A 133 CRFILSCNYVSRI 145 (319)
T ss_dssp EEEEEEESCGGGS
T ss_pred CeEEEEeCChhhc
Confidence 7788888887654
No 113
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.20 E-value=5.4e-11 Score=144.04 Aligned_cols=138 Identities=24% Similarity=0.305 Sum_probs=101.9
Q ss_pred hhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----------CC
Q psy11009 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC----------GT 768 (863)
Q Consensus 699 ~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el----------~~ 768 (863)
|++++++.+|++++|.+...+.+.+.+. .....++||+||||||||++|+++|..+ +.
T Consensus 176 l~~~~~~~~~d~~iGr~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~ 243 (758)
T 1r6b_X 176 LNQLARVGGIDPLIGREKELERAIQVLC------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADC 243 (758)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTC
T ss_pred HHHHHhcCCCCCccCCHHHHHHHHHHHh------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 4455667799999999999999888663 1244689999999999999999999987 67
Q ss_pred cEEEEeccccc--ccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCC
Q psy11009 769 TFFNVCSSTLT--SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDS 846 (863)
Q Consensus 769 ~~i~vs~s~l~--~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~ 846 (863)
.++.++...+. .++.|+.+..++.++..+....++||||||+|.+++.++.... ...+.+.| ..+..
T Consensus 244 ~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~---~~~~~~~L----~~~l~---- 312 (758)
T 1r6b_X 244 TIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGG---QVDAANLI----KPLLS---- 312 (758)
T ss_dssp EEEECCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSC---HHHHHHHH----SSCSS----
T ss_pred EEEEEcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcc---hHHHHHHH----HHHHh----
Confidence 78888887776 4688899999999999988778999999999999876543211 11222222 22222
Q ss_pred CCceEEEEecCCC
Q psy11009 847 SKVVMVLAATNFP 859 (863)
Q Consensus 847 ~~~VvVIaTTN~P 859 (863)
...+.+|++||.+
T Consensus 313 ~~~~~~I~at~~~ 325 (758)
T 1r6b_X 313 SGKIRVIGSTTYQ 325 (758)
T ss_dssp SCCCEEEEEECHH
T ss_pred CCCeEEEEEeCch
Confidence 1347788888864
No 114
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=5.7e-11 Score=127.64 Aligned_cols=135 Identities=26% Similarity=0.272 Sum_probs=92.4
Q ss_pred HhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC-----CcE
Q psy11009 696 ERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG-----TTF 770 (863)
Q Consensus 696 ~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~-----~~~ 770 (863)
...|.++|++.+|++++|.+.+++.+..++.. +. ..++||+||||||||++|+++++.+. ..+
T Consensus 12 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~ 79 (327)
T 1iqp_A 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS-MPHLLFAGPPGVGKTTAALALARELFGENWRHNF 79 (327)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHE
T ss_pred CCchhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCce
Confidence 35699999999999999999999999987731 11 23699999999999999999999863 357
Q ss_pred EEEecccccccccchhHHHHHHHHHHH-H-hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCC
Q psy11009 771 FNVCSSTLTSKYRGESEKLVRLLFEMA-R-FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSK 848 (863)
Q Consensus 771 i~vs~s~l~~~~~Ge~e~~ir~lf~~A-~-~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~ 848 (863)
+.+++++..+. ......+....... . ...+.+|||||+|.+.. ..++.|+..|+.. ..
T Consensus 80 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~------------~~~~~L~~~le~~------~~ 139 (327)
T 1iqp_A 80 LELNASDERGI--NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ------------DAQQALRRTMEMF------SS 139 (327)
T ss_dssp EEEETTCHHHH--HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH------------HHHHHHHHHHHHT------TT
T ss_pred EEeeccccCch--HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH------------HHHHHHHHHHHhc------CC
Confidence 78877654221 01111111111100 0 13578999999998843 2456677777543 23
Q ss_pred ceEEEEecCCCCCC
Q psy11009 849 VVMVLAATNFPWEG 862 (863)
Q Consensus 849 ~VvVIaTTN~P~~I 862 (863)
.+.+|++||.+..+
T Consensus 140 ~~~~i~~~~~~~~l 153 (327)
T 1iqp_A 140 NVRFILSCNYSSKI 153 (327)
T ss_dssp TEEEEEEESCGGGS
T ss_pred CCeEEEEeCCcccc
Confidence 46788888887654
No 115
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.19 E-value=3.9e-11 Score=121.38 Aligned_cols=132 Identities=20% Similarity=0.205 Sum_probs=91.1
Q ss_pred HhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc------
Q psy11009 696 ERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------ 769 (863)
Q Consensus 696 ~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------ 769 (863)
...|.+++++..+++++|.+..++.+..++.. +..+..++|+||||||||++++++++.++..
T Consensus 10 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~ 78 (250)
T 1njg_A 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITAT 78 (250)
T ss_dssp -CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSS
T ss_pred HHHHhhccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC
Confidence 35688999999999999999999999987731 2233589999999999999999999987432
Q ss_pred ------------------EEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHH
Q psy11009 770 ------------------FFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASR 827 (863)
Q Consensus 770 ------------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~ 827 (863)
++.+.... ......++.++.... ...+.+|||||+|.+..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~------------ 140 (250)
T 1njg_A 79 PCGVCDNCREIEQGRFVDLIEIDAAS------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------ 140 (250)
T ss_dssp CCSCSHHHHHHHTTCCSSEEEEETTC------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH------------
T ss_pred CCcccHHHHHHhccCCcceEEecCcc------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH------------
Confidence 22222211 112233445554432 23478999999998732
Q ss_pred HHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 828 RVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 828 rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
..++.|+..++.. ...+.+|++||.+..+
T Consensus 141 ~~~~~l~~~l~~~------~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 141 HSFNALLKTLEEP------PEHVKFLLATTDPQKL 169 (250)
T ss_dssp HHHHHHHHHHHSC------CTTEEEEEEESCGGGS
T ss_pred HHHHHHHHHHhcC------CCceEEEEEeCChHhC
Confidence 2456777777543 2347788888887654
No 116
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.17 E-value=2.4e-11 Score=147.27 Aligned_cols=128 Identities=22% Similarity=0.316 Sum_probs=91.2
Q ss_pred HHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-------
Q psy11009 694 MLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC------- 766 (863)
Q Consensus 694 ~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el------- 766 (863)
.....|++++++..+++++|.++.++.+.+.+. .....++||+||||||||++|+++|..+
T Consensus 165 ~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~------------~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~ 232 (758)
T 3pxi_A 165 SLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLS------------RRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPE 232 (758)
T ss_dssp SSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHH------------CSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCT
T ss_pred HHHHHHHHHHhhCCCCCccCchHHHHHHHHHHh------------CCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCCh
Confidence 334567788899999999999999999988763 1334689999999999999999999997
Q ss_pred ---CCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCC
Q psy11009 767 ---GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSA 843 (863)
Q Consensus 767 ---~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~ 843 (863)
+.+++.+++ ..+|.|+.+..++.+|..+....++||||| . . ....+.|+..|+
T Consensus 233 ~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD------~---~-------~~~~~~L~~~l~----- 288 (758)
T 3pxi_A 233 ILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID------A---A-------IDASNILKPSLA----- 288 (758)
T ss_dssp TTSSCCEECC-------------CTTHHHHHHHHHTCCCCEEEEC------C------------------CCCTT-----
T ss_pred hhcCCeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc------C---c-------hhHHHHHHHHHh-----
Confidence 788888887 566888888999999999998899999999 1 0 113344443332
Q ss_pred CCCCCceEEEEecCCCC
Q psy11009 844 EDSSKVVMVLAATNFPW 860 (863)
Q Consensus 844 ~~~~~~VvVIaTTN~P~ 860 (863)
.+.+.+|+|||.++
T Consensus 289 ---~~~v~~I~at~~~~ 302 (758)
T 3pxi_A 289 ---RGELQCIGATTLDE 302 (758)
T ss_dssp ---SSSCEEEEECCTTT
T ss_pred ---cCCEEEEeCCChHH
Confidence 23478999999877
No 117
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.16 E-value=6.2e-11 Score=130.58 Aligned_cols=128 Identities=9% Similarity=-0.004 Sum_probs=91.0
Q ss_pred cEEEEEecccccccccccchhHhH-HHHHHHHhhccCCCCCCeEEEEccCCC---CCccHHHhhccceEEEecCCCHHHH
Q psy11009 163 PTLAVAKMFSSLAVQKLLRGSKTF-RTLCIHKYRLLTFPSTPVQYSIQKGIP---WDIDEALRRRLEKRIYIPLPSKAGR 238 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~~~~~~v-~n~lL~~ld~~~~~~~~VivIaATN~p---~~LD~AllRRFD~~I~i~lPd~~~R 238 (863)
++||||||+|.+...+. ..+ +..|+ +.. .++.||++||.+ +.+++++++||...|++++|+.+++
T Consensus 134 ~~vlilDEi~~l~~~~~----~~~~l~~l~---~~~----~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~ 202 (384)
T 2qby_B 134 RAIIYLDEVDTLVKRRG----GDIVLYQLL---RSD----ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQL 202 (384)
T ss_dssp CEEEEEETTHHHHHSTT----SHHHHHHHH---TSS----SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHH
T ss_pred CCEEEEECHHHhccCCC----CceeHHHHh---cCC----cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHH
Confidence 34999999999975431 122 22332 222 379999999998 7899999999988999999999999
Q ss_pred HHHHHHHhcc----CCCCCcccHHHHhhhCCCCCH--HHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHH
Q psy11009 239 EALLKINLKE----VKVDPAVDLTHIASQLDGYSG--ADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRD 312 (863)
Q Consensus 239 ~~IL~~~l~~----~~l~~dvdl~~LA~~TeG~SG--ADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~D 312 (863)
.+||+.++.. ..+. +-.++.++..+.+.+| ..+.++|+.|+..+. . ...|+.+|
T Consensus 203 ~~il~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~-----------------~~~i~~~~ 262 (384)
T 2qby_B 203 KFILSKYAEYGLIKGTYD-DEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--G-----------------GGIIRKEH 262 (384)
T ss_dssp HHHHHHHHHHTSCTTSCC-SHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--S-----------------SSCCCHHH
T ss_pred HHHHHHHHHhhcccCCcC-HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--C-----------------CCccCHHH
Confidence 9999998853 2222 3336778887764333 445566666654433 1 34799999
Q ss_pred HHHHHHHhc
Q psy11009 313 FEEALARCN 321 (863)
Q Consensus 313 f~~AL~~v~ 321 (863)
+..++.+..
T Consensus 263 v~~~~~~~~ 271 (384)
T 2qby_B 263 VDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998774
No 118
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.14 E-value=4e-10 Score=123.55 Aligned_cols=180 Identities=12% Similarity=0.003 Sum_probs=124.1
Q ss_pred ceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccce
Q psy11009 77 GNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYI 153 (863)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l 153 (863)
.+++| |.||||||++++.+++. +|....+|.+ . ....++.++..
T Consensus 53 ~~ll~---------Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~--------~------------~~~~l~~~~~~---- 99 (334)
T 1in4_A 53 HVLLA---------GPPGLGKTTLAHIIASELQTNIHVTSGPVL--------V------------KQGDMAAILTS---- 99 (334)
T ss_dssp CEEEE---------SSTTSSHHHHHHHHHHHHTCCEEEEETTTC--------C------------SHHHHHHHHHH----
T ss_pred eEEEE---------CCCCCcHHHHHHHHHHHhCCCEEEEechHh--------c------------CHHHHHHHHHH----
Confidence 36777 99999999999999985 1122222222 0 01122333321
Q ss_pred eeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccC-------C--------CCCCeEEEEccCCCCCccH
Q psy11009 154 EDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT-------F--------PSTPVQYSIQKGIPWDIDE 218 (863)
Q Consensus 154 ~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~-------~--------~~~~VivIaATN~p~~LD~ 218 (863)
...++|+||||++.+.. .+...|+..+.... . .-..+.++++||++..|++
T Consensus 100 ------~~~~~v~~iDE~~~l~~--------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~ 165 (334)
T 1in4_A 100 ------LERGDVLFIDEIHRLNK--------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSS 165 (334)
T ss_dssp ------CCTTCEEEEETGGGCCH--------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCH
T ss_pred ------ccCCCEEEEcchhhcCH--------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCH
Confidence 12457999999999864 12233333332111 0 0124788899999999999
Q ss_pred HHhhccceEEEecCCCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhc
Q psy11009 219 ALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIR 297 (863)
Q Consensus 219 AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~ 297 (863)
++++||...+.+++|+.+++.+|++......... .+-.+..||..+.| +...+.++++.+...|..+.
T Consensus 166 ~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~~---------- 234 (334)
T 1in4_A 166 PLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVVK---------- 234 (334)
T ss_dssp HHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHcC----------
Confidence 9999999999999999999999999988654433 23347889999987 56888889988877666543
Q ss_pred cCCccccCCCCCHHHHHHHHHHhc
Q psy11009 298 QIPKEELDLPVSQRDFEEALARCN 321 (863)
Q Consensus 298 ~~~~~~~~~~Vt~~Df~~AL~~v~ 321 (863)
...||.+++..++..+.
T Consensus 235 -------~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 235 -------ADRINTDIVLKTMEVLN 251 (334)
T ss_dssp -------CSSBCHHHHHHHHHHHT
T ss_pred -------CCCcCHHHHHHHHHHhC
Confidence 34799999999998764
No 119
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.14 E-value=1e-10 Score=125.44 Aligned_cols=130 Identities=19% Similarity=0.146 Sum_probs=92.4
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-----CCcEE
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFF 771 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i 771 (863)
..|.++|++.+|++++|.+.+++.+..++. . +.. .++||+||||||||++|+++++.+ +..++
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~----------~-~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~ 76 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAK----------D-GNM-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVL 76 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHH----------S-CCC-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEE
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHH----------c-CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEE
Confidence 358899999999999999999999998773 1 222 249999999999999999999986 45688
Q ss_pred EEecccccccccchhHHHHHHHHHHHH-------hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCC
Q psy11009 772 NVCSSTLTSKYRGESEKLVRLLFEMAR-------FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAE 844 (863)
Q Consensus 772 ~vs~s~l~~~~~Ge~e~~ir~lf~~A~-------~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~ 844 (863)
.+++++..+ ...++.++.... ...+.+|||||+|.+.. ...+.|+..++..
T Consensus 77 ~~~~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~---- 134 (323)
T 1sxj_B 77 ELNASDDRG------IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA------------GAQQALRRTMELY---- 134 (323)
T ss_dssp EECTTSCCS------HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH------------HHHHTTHHHHHHT----
T ss_pred EecCccccC------hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH------------HHHHHHHHHHhcc----
Confidence 888765321 223344443332 22478999999998843 1345566666542
Q ss_pred CCCCceEEEEecCCCCCC
Q psy11009 845 DSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 845 ~~~~~VvVIaTTN~P~~I 862 (863)
...+.+|++||.+..+
T Consensus 135 --~~~~~~il~~~~~~~l 150 (323)
T 1sxj_B 135 --SNSTRFAFACNQSNKI 150 (323)
T ss_dssp --TTTEEEEEEESCGGGS
T ss_pred --CCCceEEEEeCChhhc
Confidence 2346777788877654
No 120
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.14 E-value=1.9e-10 Score=123.29 Aligned_cols=133 Identities=24% Similarity=0.297 Sum_probs=88.7
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc---
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY--- 782 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~--- 782 (863)
.+++|++.+++.+...+.... .......+|..++||+||||||||++|+++|..+ +.+++.++++.+....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~---~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRAR---AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHH---HTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHh---cCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 458999999999999884210 0011223455689999999999999999999998 5679999988764321
Q ss_pred --c-------chhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCC-----CCC
Q psy11009 783 --R-------GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAED-----SSK 848 (863)
Q Consensus 783 --~-------Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~-----~~~ 848 (863)
. |.... ..+........+++|||||+|.+.. .+++.|+..|+....... .-.
T Consensus 94 ~l~g~~~~~~~~~~~--~~~~~~~~~~~~~vl~lDEi~~l~~------------~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDAIEKAHP------------DVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHCCCTTSTTTTTC--CHHHHHHHHCSSEEEEEETGGGSCH------------HHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HhcCCCCcccccccc--chHHHHHHhCCCeEEEEeChhhcCH------------HHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 1 11100 1233333445569999999998843 467888888864321111 113
Q ss_pred ceEEEEecCC
Q psy11009 849 VVMVLAATNF 858 (863)
Q Consensus 849 ~VvVIaTTN~ 858 (863)
.+++|+|||.
T Consensus 160 ~~iiI~ttn~ 169 (311)
T 4fcw_A 160 NTVIIMTSNL 169 (311)
T ss_dssp TEEEEEEEST
T ss_pred CcEEEEeccc
Confidence 5779999998
No 121
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.13 E-value=1.3e-10 Score=127.48 Aligned_cols=131 Identities=19% Similarity=0.189 Sum_probs=90.9
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc-------
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------- 769 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------- 769 (863)
..|.++|++.+|++++|.+.+++.+...+. . +..+..+||+||||||||++|+++|+.++..
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~----------~-~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~ 72 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLS----------L-GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATP 72 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHH----------H-TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSC
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHH----------h-CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCC
Confidence 357889999999999999999999998773 1 2233578999999999999999999998542
Q ss_pred -----------------EEEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCCcccccCCCCchhhHHHH
Q psy11009 770 -----------------FFNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEIDSLCSRRGSESEHEASRR 828 (863)
Q Consensus 770 -----------------~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID~l~~~R~~~~~~e~~~r 828 (863)
++.+++..- . ....++.+++.+. ...+.||||||+|.+.. .
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~------------~ 134 (373)
T 1jr3_A 73 CGVCDNCREIEQGRFVDLIEIDAASR--T----KVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR------------H 134 (373)
T ss_dssp CSSSHHHHHHHTSCCSSCEEEETTCS--C----CSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCH------------H
T ss_pred CcccHHHHHHhccCCCceEEeccccc--C----CHHHHHHHHHHHhhccccCCeEEEEEECcchhcH------------H
Confidence 333333210 0 1112345555543 23468999999998843 2
Q ss_pred HHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 829 v~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
..+.|+..++.. ...+++|++|+.+..+
T Consensus 135 ~~~~Ll~~le~~------~~~~~~Il~~~~~~~l 162 (373)
T 1jr3_A 135 SFNALLKTLEEP------PEHVKFLLATTDPQKL 162 (373)
T ss_dssp HHHHHHHHHHSC------CSSEEEEEEESCGGGS
T ss_pred HHHHHHHHHhcC------CCceEEEEEeCChHhC
Confidence 456777777542 3347788888877654
No 122
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.12 E-value=1.9e-11 Score=119.76 Aligned_cols=132 Identities=14% Similarity=0.072 Sum_probs=88.4
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhc-------ccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHh
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSL-------VLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSIT 147 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-------~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~ 147 (863)
..++|++ |.||||||++|+.+++.- ..- ..+.++. .......-..+.|..+..++.++
T Consensus 43 ~~~vll~---------G~~G~GKT~la~~~~~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 107 (187)
T 2p65_A 43 KNNPILL---------GDPGVGKTAIVEGLAIKI-VQGDVPDSLKGRKLVSL-----DLSSLIAGAKYRGDFEERLKSIL 107 (187)
T ss_dssp SCEEEEE---------SCGGGCHHHHHHHHHHHH-HTTCSCTTTTTCEEEEE-----CHHHHHHHCCSHHHHHHHHHHHH
T ss_pred CCceEEE---------CCCCCCHHHHHHHHHHHH-HhcCCcchhcCCeEEEE-----eHHHhhcCCCchhHHHHHHHHHH
Confidence 3467888 999999999999998851 000 1111211 11111112335677788888887
Q ss_pred hcccceeeeccCCCCcEEEEEecccccccccc-cchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-----CccHHHh
Q psy11009 148 NRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKL-LRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-----DIDEALR 221 (863)
Q Consensus 148 ~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~-~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-----~LD~All 221 (863)
... ....+|+||||||+|.+...+. ......+.+.|+..++. .++++|++||.++ .+|++++
T Consensus 108 ~~~-------~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~-----~~~~ii~~~~~~~~~~~~~~~~~l~ 175 (187)
T 2p65_A 108 KEV-------QDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR-----GELRCIGATTVSEYRQFIEKDKALE 175 (187)
T ss_dssp HHH-------HHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT-----TCSCEEEEECHHHHHHHTTTCHHHH
T ss_pred HHH-------HhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc-----CCeeEEEecCHHHHHHHHhccHHHH
Confidence 642 1335789999999999986664 33334445555544432 2689999999876 6999999
Q ss_pred hccceEEEecCCC
Q psy11009 222 RRLEKRIYIPLPS 234 (863)
Q Consensus 222 RRFD~~I~i~lPd 234 (863)
|||+. |+++.|+
T Consensus 176 ~R~~~-i~i~~p~ 187 (187)
T 2p65_A 176 RRFQQ-ILVEQPS 187 (187)
T ss_dssp HHEEE-EECCSCC
T ss_pred HhcCc-ccCCCCC
Confidence 99995 9999996
No 123
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.12 E-value=1.6e-10 Score=121.72 Aligned_cols=129 Identities=22% Similarity=0.212 Sum_probs=79.3
Q ss_pred CccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC---CcEEEEecccccccc
Q psy11009 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG---TTFFNVCSSTLTSKY 782 (863)
Q Consensus 706 ~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~---~~~i~vs~s~l~~~~ 782 (863)
.+|++++|.+...+.+.+.+... .....++||+||||||||++|++++..+. .+|+.++++.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHH----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 46889999999998888766321 12236899999999999999999999874 789999998764321
Q ss_pred c-----chhHHH-------HHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC-----CCCC
Q psy11009 783 R-----GESEKL-------VRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS-----SAED 845 (863)
Q Consensus 783 ~-----Ge~e~~-------ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~-----~~~~ 845 (863)
. |..... ....+..+ .+++|||||||.+.. .++..|+..|+... ....
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a---~~~~l~lDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~ 137 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERA---DGGTLFLDELATAPM------------MVQEKLLRVIEYGELERVGGSQP 137 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHT---TTSEEEEESGGGSCH------------HHHHHHHHHHHHCEECCCCC--C
T ss_pred HHHHhcCCcccccccccccccchhhhc---CCcEEEEechHhcCH------------HHHHHHHHHHHhCCeecCCCccc
Confidence 1 110000 01122222 368999999998843 25667777776321 1111
Q ss_pred CCCceEEEEecCCC
Q psy11009 846 SSKVVMVLAATNFP 859 (863)
Q Consensus 846 ~~~~VvVIaTTN~P 859 (863)
....+.||+|||.+
T Consensus 138 ~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 138 LQVNVRLVCATNAD 151 (265)
T ss_dssp EECCCEEEEEESSC
T ss_pred ccCCeEEEEecCcC
Confidence 12347899999975
No 124
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.12 E-value=2.1e-10 Score=125.56 Aligned_cols=137 Identities=11% Similarity=0.018 Sum_probs=99.2
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCC---CCccHHHhhccc-eEEEecCCCH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIP---WDIDEALRRRLE-KRIYIPLPSK 235 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p---~~LD~AllRRFD-~~I~i~lPd~ 235 (863)
...|+||||||+|.+...++ ..+...|+..++.. ...++.+|++||.+ +.+++++.+||. +.|++++++.
T Consensus 126 ~~~~~vlilDE~~~l~~~~~----~~~l~~l~~~~~~~--~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~ 199 (386)
T 2qby_A 126 YGSQVVIVLDEIDAFVKKYN----DDILYKLSRINSEV--NKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNA 199 (386)
T ss_dssp CCSCEEEEEETHHHHHHSSC----STHHHHHHHHHHSC--CC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCH
T ss_pred cCCeEEEEEcChhhhhccCc----CHHHHHHhhchhhc--CCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCH
Confidence 44599999999999975432 24556666666654 22378999999987 578999999987 5999999999
Q ss_pred HHHHHHHHHHhcc----CCCCCcccHHHHhhhCC---CCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCC
Q psy11009 236 AGREALLKINLKE----VKVDPAVDLTHIASQLD---GYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPV 308 (863)
Q Consensus 236 ~~R~~IL~~~l~~----~~l~~dvdl~~LA~~Te---G~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~V 308 (863)
+++.+||+.++.. ..+. +-.++.++..+. | ....+.++|..|+..+..+. ...|
T Consensus 200 ~~~~~il~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~-----------------~~~i 260 (386)
T 2qby_A 200 EELEDILTKRAQMAFKPGVLP-DNVIKLCAALAAREHG-DARRALDLLRVSGEIAERMK-----------------DTKV 260 (386)
T ss_dssp HHHHHHHHHHHHHHBCSSCSC-HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTT-----------------CSSC
T ss_pred HHHHHHHHHHHHhhccCCCCC-HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcC-----------------CCcc
Confidence 9999999988752 1222 223566777765 4 45566678888876666543 3479
Q ss_pred CHHHHHHHHHHhc
Q psy11009 309 SQRDFEEALARCN 321 (863)
Q Consensus 309 t~~Df~~AL~~v~ 321 (863)
+.+|+..|+....
T Consensus 261 ~~~~v~~a~~~~~ 273 (386)
T 2qby_A 261 KEEYVYMAKEEIE 273 (386)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988764
No 125
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.12 E-value=4.8e-10 Score=123.32 Aligned_cols=144 Identities=12% Similarity=-0.025 Sum_probs=105.5
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCC-CCCCeEEEEccCCC---CCccHHHhhccce-EEEecCCC
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTF-PSTPVQYSIQKGIP---WDIDEALRRRLEK-RIYIPLPS 234 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~-~~~~VivIaATN~p---~~LD~AllRRFD~-~I~i~lPd 234 (863)
..+|+||||||+|.+ .......|+..++.... ...++.||++||.+ +.+++.+.+||.. .|++++++
T Consensus 123 ~~~~~vlilDE~~~l--------~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~ 194 (389)
T 1fnn_A 123 RDLYMFLVLDDAFNL--------APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT 194 (389)
T ss_dssp TTCCEEEEEETGGGS--------CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCB
T ss_pred cCCeEEEEEECcccc--------chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCC
Confidence 467999999999998 13455666666644322 00278999999998 7899999999986 89999999
Q ss_pred HHHHHHHHHHHhcc----CCCCCcccHHHHhhhCCCC--------CHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCcc
Q psy11009 235 KAGREALLKINLKE----VKVDPAVDLTHIASQLDGY--------SGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKE 302 (863)
Q Consensus 235 ~~~R~~IL~~~l~~----~~l~~dvdl~~LA~~TeG~--------SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~ 302 (863)
.++..++++..+.. ..+ .+-.++.++..+.+. ....+.++|+.|+..+.++.
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~--------------- 258 (389)
T 1fnn_A 195 KDQIFDILLDRAKAGLAEGSY-SEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNG--------------- 258 (389)
T ss_dssp HHHHHHHHHHHHHHHBCTTSS-CHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTT---------------
T ss_pred HHHHHHHHHHHHHhhcCCCCC-CHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhC---------------
Confidence 99999999988853 122 234467788888432 45677888888877776654
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCchhhh
Q psy11009 303 ELDLPVSQRDFEEALARCNKSVAREDL 329 (863)
Q Consensus 303 ~~~~~Vt~~Df~~AL~~v~psvs~~~l 329 (863)
...|+.+|+..++.......-.+.+
T Consensus 259 --~~~i~~~~v~~~~~~~~~~~~~~~l 283 (389)
T 1fnn_A 259 --RKHIAPEDVRKSSKEVLFGISEEVL 283 (389)
T ss_dssp --CSSCCHHHHHHHHHHHSCCCCHHHH
T ss_pred --CCCcCHHHHHHHHHHHhhhhHHHHH
Confidence 3479999999999887655444333
No 126
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.10 E-value=2.6e-10 Score=124.72 Aligned_cols=132 Identities=17% Similarity=0.158 Sum_probs=84.6
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC---------
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT--------- 768 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~--------- 768 (863)
.|++||+|.+|++++|++.+.+.+..++. ..+..+ +++|+||||||||++++++|+++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~----------~~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSD----------QPRDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTT----------CTTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHh----------hCCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 69999999999999999999998887651 112222 3999999999999999999996511
Q ss_pred --------------------cEEEEecccccccccchhHHHHHHHHHHHH--------------hCCCeEEEEcCCCccc
Q psy11009 769 --------------------TFFNVCSSTLTSKYRGESEKLVRLLFEMAR--------------FYAPSTIFIDEIDSLC 814 (863)
Q Consensus 769 --------------------~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~--------------~~~p~ILfIDEID~l~ 814 (863)
.++.+++++... .....++....... ...|.||||||++.+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~ 147 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGN----NDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT 147 (354)
T ss_dssp --------------CCEECSSEEEECCC--------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC
T ss_pred ceeecccccccceeeeecccceEEecHhhcCC----cchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC
Confidence 123333322110 00112333333321 2257799999999863
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 815 SRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 815 ~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
. ...+.|+..|+... ..+.+|.+||.+..+
T Consensus 148 ~------------~~~~~L~~~le~~~------~~~~~Il~t~~~~~l 177 (354)
T 1sxj_E 148 K------------DAQAALRRTMEKYS------KNIRLIMVCDSMSPI 177 (354)
T ss_dssp H------------HHHHHHHHHHHHST------TTEEEEEEESCSCSS
T ss_pred H------------HHHHHHHHHHHhhc------CCCEEEEEeCCHHHH
Confidence 2 24566777776542 236677888888765
No 127
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.10 E-value=5.1e-10 Score=122.67 Aligned_cols=133 Identities=21% Similarity=0.168 Sum_probs=88.5
Q ss_pred cccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---------CCcEEEEecccc
Q psy11009 708 WDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---------GTTFFNVCSSTL 778 (863)
Q Consensus 708 ~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---------~~~~i~vs~s~l 778 (863)
.++++|.+...+.+..++...+ . +..+.+++|+||||||||++|+++++.+ +.+++.+++...
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~------~--~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPAL------R--GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGT------S--SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHH------c--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 3889999999999998763111 0 2345689999999999999999999998 889999998754
Q ss_pred cccc----------------cch-hHHHHHHHHHHHHh-CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC
Q psy11009 779 TSKY----------------RGE-SEKLVRLLFEMARF-YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL 840 (863)
Q Consensus 779 ~~~~----------------~Ge-~e~~ir~lf~~A~~-~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l 840 (863)
.+.+ .|. .......++..... ..+++|||||+|.+...+ ....++..|+..++..
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQEL 162 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhhc
Confidence 3211 111 22334445554433 347899999999996532 1234555666555433
Q ss_pred CCCCCCCCceEEEEecCCC
Q psy11009 841 SSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 841 ~~~~~~~~~VvVIaTTN~P 859 (863)
.. ...+.+|++||.+
T Consensus 163 ~~----~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 163 GD----RVWVSLVGITNSL 177 (387)
T ss_dssp ---------CEEEEECSCS
T ss_pred CC----CceEEEEEEECCC
Confidence 10 2347889999987
No 128
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.09 E-value=1.3e-10 Score=134.60 Aligned_cols=127 Identities=10% Similarity=-0.017 Sum_probs=83.5
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhc-------cCCCCCCeEEEEccCCCCC---ccHHHhhccceEEEec
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRL-------LTFPSTPVQYSIQKGIPWD---IDEALRRRLEKRIYIP 231 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~-------~~~~~~~VivIaATN~p~~---LD~AllRRFD~~I~i~ 231 (863)
.|+|||||||+.+ ...+.+.|+..|+. ........++|+|||.+.. +.+|+++||..+|+++
T Consensus 109 ~~~IL~IDEI~r~--------~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~~~~~aLldRF~~~i~v~ 180 (500)
T 3nbx_X 109 EAEIVFLDEIWKA--------GPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEADSSLEALYDRMLIRLWLD 180 (500)
T ss_dssp GCSEEEEESGGGC--------CHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTTCTTHHHHTTCCEEEECC
T ss_pred cceeeeHHhHhhh--------cHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCccccHHHHHHHHHHHHHHH
Confidence 4789999999754 24567788888841 1111112356788886432 5579999999999999
Q ss_pred CCCH-HHHHHHHHHHhcc-------------------------CCCCCcccHHHHhhh---------CCCCCHHHHHHHH
Q psy11009 232 LPSK-AGREALLKINLKE-------------------------VKVDPAVDLTHIASQ---------LDGYSGADITNVC 276 (863)
Q Consensus 232 lPd~-~~R~~IL~~~l~~-------------------------~~l~~dvdl~~LA~~---------TeG~SGADI~~lv 276 (863)
.|+. ++|..|++.+... ..+..++ ++.++.. ..|+|...+..++
T Consensus 181 ~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v-~e~i~~l~~~lr~~r~~~~iS~R~~~~ll 259 (500)
T 3nbx_X 181 KVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHV-FELIFMLRQQLDKLPDAPYVSDRRWKKAI 259 (500)
T ss_dssp SCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHH-HHHHHHHHHHHHHCSSSCCCCHHHHHHHH
T ss_pred HhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHH-HHHHHHHHHHhhcCCCCCccchhHHHHHH
Confidence 9986 7899999876531 1111111 2333333 3588999999999
Q ss_pred HHHHHHHHHhhhcCCChhhhc
Q psy11009 277 RDASMMSMRRKIIGLTPEQIR 297 (863)
Q Consensus 277 ~~Aal~air~~~~~~~~~~~~ 297 (863)
+.|...|..++......+++.
T Consensus 260 r~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 260 RLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHHHHHHTTCSBCCGGGGG
T ss_pred HHHHHHHhhcCCccccchHHH
Confidence 888777777665444444444
No 129
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.08 E-value=3e-10 Score=124.37 Aligned_cols=130 Identities=21% Similarity=0.223 Sum_probs=90.3
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC-----CcEE
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG-----TTFF 771 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~-----~~~i 771 (863)
..|+++|++.+|++++|++.+++.|...+. . +.. .+++|+||||||||++|+++|+.+. ..++
T Consensus 13 ~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~----------~-g~~-~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 13 LPWVEKYRPETLDEVYGQNEVITTVRKFVD----------E-GKL-PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHH----------T-TCC-CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred CchHHHhCCCcHHHhcCcHHHHHHHHHHHh----------c-CCC-ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 469999999999999999999999988773 1 222 2499999999999999999999973 2467
Q ss_pred EEecccccccccchhHHHHHHHHH-HHHh-----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCC
Q psy11009 772 NVCSSTLTSKYRGESEKLVRLLFE-MARF-----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAED 845 (863)
Q Consensus 772 ~vs~s~l~~~~~Ge~e~~ir~lf~-~A~~-----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~ 845 (863)
.+++++..+ ...++.... .+.. ..+.|++|||+|.+.. ..++.|+..|+...
T Consensus 81 ~~~~~~~~~------~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~------------~~~~~L~~~le~~~---- 138 (340)
T 1sxj_C 81 ELNASDDRG------IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN------------AAQNALRRVIERYT---- 138 (340)
T ss_dssp EECTTSCCS------HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH------------HHHHHHHHHHHHTT----
T ss_pred EEcCccccc------HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhcCC----
Confidence 777765321 112222222 2211 2368999999998843 23566777776432
Q ss_pred CCCceEEEEecCCCCCC
Q psy11009 846 SSKVVMVLAATNFPWEG 862 (863)
Q Consensus 846 ~~~~VvVIaTTN~P~~I 862 (863)
..+.+|.+||.+..+
T Consensus 139 --~~~~~il~~n~~~~i 153 (340)
T 1sxj_C 139 --KNTRFCVLANYAHKL 153 (340)
T ss_dssp --TTEEEEEEESCGGGS
T ss_pred --CCeEEEEEecCcccc
Confidence 235677788887654
No 130
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.07 E-value=3.7e-10 Score=128.79 Aligned_cols=134 Identities=16% Similarity=0.220 Sum_probs=81.8
Q ss_pred CCCCcccccc-c--hHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEe
Q psy11009 703 NPNIRWDDIA-E--LTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVC 774 (863)
Q Consensus 703 ~p~~~~~dLi-G--l~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs 774 (863)
.|..+|++++ | ...+...+..... ..+. +.+++|+||||||||+||+++++++ +.++++++
T Consensus 99 ~~~~tfd~fv~g~~n~~a~~~~~~~a~----------~~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 99 NPDYTFENFVVGPGNSFAYHAALEVAK----------HPGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp CTTCSGGGCCCCTTTHHHHHHHHHHHH----------STTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE
T ss_pred CCCCChhhcCCCCchHHHHHHHHHHHh----------CCCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee
Confidence 3455888887 5 3334444444332 2222 5689999999999999999999998 88999999
Q ss_pred cccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEE
Q psy11009 775 SSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLA 854 (863)
Q Consensus 775 ~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIa 854 (863)
+.++...+.+.........|.......+++|||||++.+..++ ..+..|+..++.+... +..+||+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~----------~~q~~l~~~l~~l~~~----~~~iIit 233 (440)
T 2z4s_A 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT----------GVQTELFHTFNELHDS----GKQIVIC 233 (440)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH----------HHHHHHHHHHHHHHTT----TCEEEEE
T ss_pred HHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh----------HHHHHHHHHHHHHHHC----CCeEEEE
Confidence 9887554433222211122332222268999999999986531 1334455555443221 2245555
Q ss_pred ecCCCCC
Q psy11009 855 ATNFPWE 861 (863)
Q Consensus 855 TTN~P~~ 861 (863)
|.+.|..
T Consensus 234 t~~~~~~ 240 (440)
T 2z4s_A 234 SDREPQK 240 (440)
T ss_dssp ESSCGGG
T ss_pred ECCCHHH
Confidence 5555554
No 131
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.07 E-value=2.9e-10 Score=124.36 Aligned_cols=126 Identities=9% Similarity=0.029 Sum_probs=88.8
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----------CCcEEEEecccccc
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC----------GTTFFNVCSSTLTS 780 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el----------~~~~i~vs~s~l~~ 780 (863)
|.|.++..+.|...+.- ... +..+.+++|+||||||||++++.+++++ ...+++++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~------~i~--~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYD------SLM--SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHH------HHH--TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHH------Hhc--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 67778888888776631 111 2455799999999999999999999998 45788999876543
Q ss_pred c----------c------cchhHHHHHHHHHHH--HhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCC
Q psy11009 781 K----------Y------RGESEKLVRLLFEMA--RFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSS 842 (863)
Q Consensus 781 ~----------~------~Ge~e~~ir~lf~~A--~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~ 842 (863)
. + .+.....++.+|... ....++||||||+|.+.. +.++..|+.+...
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~-----------q~~L~~l~~~~~~--- 159 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLS-----------EKILQYFEKWISS--- 159 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCC-----------THHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhc-----------chHHHHHHhcccc---
Confidence 2 1 133456677788764 345689999999999971 2355666655421
Q ss_pred CCCCCCceEEEEecCCCCC
Q psy11009 843 AEDSSKVVMVLAATNFPWE 861 (863)
Q Consensus 843 ~~~~~~~VvVIaTTN~P~~ 861 (863)
...+++||+++|.++.
T Consensus 160 ---~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 160 ---KNSKLSIICVGGHNVT 175 (318)
T ss_dssp ---SSCCEEEEEECCSSCC
T ss_pred ---cCCcEEEEEEecCccc
Confidence 2345899999998764
No 132
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.06 E-value=2.5e-10 Score=113.36 Aligned_cols=134 Identities=18% Similarity=0.205 Sum_probs=80.2
Q ss_pred hcCCCCccccccc----hHHHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHh----CCcEE
Q psy11009 701 QKNPNIRWDDIAE----LTDAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATEC----GTTFF 771 (863)
Q Consensus 701 ~k~p~~~~~dLiG----l~~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el----~~~~i 771 (863)
++|++.+|+++++ +..+.+.+.+++ .... .+..+++|+||||||||+|+++++..+ |..++
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~ 71 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFV----------HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGY 71 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHH----------HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCC
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHH----------HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 4688899999986 344444444443 2222 234689999999999999999999887 66777
Q ss_pred EEecccccccccchhHHH-HHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCce
Q psy11009 772 NVCSSTLTSKYRGESEKL-VRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVV 850 (863)
Q Consensus 772 ~vs~s~l~~~~~Ge~e~~-ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~V 850 (863)
.++..++...+....... ...+.. ....|.+|+|||++.... +...+..+..++.... .. ..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~llilDE~~~~~~-------~~~~~~~l~~ll~~~~---~~-----~~ 134 (180)
T 3ec2_A 72 FFDTKDLIFRLKHLMDEGKDTKFLK--TVLNSPVLVLDDLGSERL-------SDWQRELISYIITYRY---NN-----LK 134 (180)
T ss_dssp EEEHHHHHHHHHHHHHHTCCSHHHH--HHHTCSEEEEETCSSSCC-------CHHHHHHHHHHHHHHH---HT-----TC
T ss_pred EEEHHHHHHHHHHHhcCchHHHHHH--HhcCCCEEEEeCCCCCcC-------CHHHHHHHHHHHHHHH---Hc-----CC
Confidence 787776654332111000 001111 123688999999985421 2333444444444331 11 13
Q ss_pred EEEEecCCCCC
Q psy11009 851 MVLAATNFPWE 861 (863)
Q Consensus 851 vVIaTTN~P~~ 861 (863)
.+|.|||.+..
T Consensus 135 ~ii~tsn~~~~ 145 (180)
T 3ec2_A 135 STIITTNYSLQ 145 (180)
T ss_dssp EEEEECCCCSC
T ss_pred CEEEEcCCChh
Confidence 56678887743
No 133
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.06 E-value=1.8e-10 Score=125.03 Aligned_cols=126 Identities=23% Similarity=0.293 Sum_probs=85.0
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccccc--
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYR-- 783 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~-- 783 (863)
++++|.+...+.+.+.+.. ......++||+||||||||++|++++... +.+|+.++++.+.....
T Consensus 2 ~~iig~s~~~~~~~~~~~~----------~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAM----------VAPSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHH----------HCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHH----------HhCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 3588999988888887731 12334689999999999999999999976 67999999987643211
Q ss_pred ---chh-------HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCC-----CCCCCCC
Q psy11009 784 ---GES-------EKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS-----SAEDSSK 848 (863)
Q Consensus 784 ---Ge~-------e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~-----~~~~~~~ 848 (863)
|.. .......|+.+. +++|||||||.+.. .++..|+..|+... .......
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~---~g~L~LDEi~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~~~~ 136 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEAD---GGTLFLDEIGDISP------------LMQVRLLRAIQEREVQRVGSNQTISV 136 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHT---TSEEEEESCTTCCH------------HHHHHHHHHHHSSBCCBTTBCCCCBC
T ss_pred HhcCccccccCchhhhhcCHHHhcC---CCEEEEeccccCCH------------HHHHHHHHHHhcCEeeecCCcccccC
Confidence 100 001122344443 68999999999843 25677888776432 1111234
Q ss_pred ceEEEEecCCC
Q psy11009 849 VVMVLAATNFP 859 (863)
Q Consensus 849 ~VvVIaTTN~P 859 (863)
.+.||+|||++
T Consensus 137 ~~riI~atn~~ 147 (304)
T 1ojl_A 137 DVRLIAATHRD 147 (304)
T ss_dssp CCEEEEEESSC
T ss_pred CeEEEEecCcc
Confidence 57899999986
No 134
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.05 E-value=1.4e-10 Score=128.80 Aligned_cols=190 Identities=15% Similarity=0.100 Sum_probs=113.0
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhH-HHHHHHHhhcccce
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSS-LNLYRSITNRGFYI 153 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~s-e~~~r~i~~~~~~l 153 (863)
..++|+| |.||||||++|+++++. +..|.+..+...+ ..+.|+|.. +..++.++....+
T Consensus 72 ~~~ill~---------Gp~GtGKT~la~~la~~----l~~~~~~~~~~~~------~~~~~~g~~~~~~~~~~~~~~~~- 131 (376)
T 1um8_A 72 KSNILLI---------GPTGSGKTLMAQTLAKH----LDIPIAISDATSL------TEAGYVGEDVENILTRLLQASDW- 131 (376)
T ss_dssp CCCEEEE---------CCTTSSHHHHHHHHHHH----TTCCEEEEEGGGC------C--------CTHHHHHHHHHTTT-
T ss_pred CCCEEEE---------CCCCCCHHHHHHHHHHH----hCCCEEEecchhh------hhcCcCCccHHHHHHHHHhhccc-
Confidence 3467888 99999999999999995 2334332222111 013456664 4456666643211
Q ss_pred eeeccCCCCcEEEEEecccccccccccc------hhHhHHHHHHHHhhccC----C--------------CCCCeEEEEc
Q psy11009 154 EDYEVSPPGPTLAVAKMFSSLAVQKLLR------GSKTFRTLCIHKYRLLT----F--------------PSTPVQYSIQ 209 (863)
Q Consensus 154 ~~~~~~~~~P~IlFiDEiDal~~~R~~~------~~~~v~n~lL~~ld~~~----~--------------~~~~VivIaA 209 (863)
......++||||||+|.+...|... ....+.+.||..|++.. . ...++++|+|
T Consensus 132 ---~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~ 208 (376)
T 1um8_A 132 ---NVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICA 208 (376)
T ss_dssp ---CHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEE
T ss_pred ---hhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEec
Confidence 1123467899999999998876331 11247889999887431 0 0136788888
Q ss_pred cCCC-----------------------------------------CCccHHHhhccceEEEecCCCHHHHHHHHHH----
Q psy11009 210 KGIP-----------------------------------------WDIDEALRRRLEKRIYIPLPSKAGREALLKI---- 244 (863)
Q Consensus 210 TN~p-----------------------------------------~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~---- 244 (863)
||.. ..+.|+|+.||+..|.|+.++.++...|+..
T Consensus 209 ~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~ 288 (376)
T 1um8_A 209 GAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNA 288 (376)
T ss_dssp ECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTC
T ss_pred CCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHH
Confidence 8731 1356777788889999999999999999962
Q ss_pred Hhc---------cCCCC-CcccHHHHhhhCC--CCCHHHHHHHHHHHHHHHHHhh
Q psy11009 245 NLK---------EVKVD-PAVDLTHIASQLD--GYSGADITNVCRDASMMSMRRK 287 (863)
Q Consensus 245 ~l~---------~~~l~-~dvdl~~LA~~Te--G~SGADI~~lv~~Aal~air~~ 287 (863)
++. +..+. .+-.++.|+.... .....+|.+++..+...++.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~ 343 (376)
T 1um8_A 289 LIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMFDL 343 (376)
T ss_dssp HHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHHTG
T ss_pred HHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHhhc
Confidence 211 11111 1223566766642 3678999999998888777654
No 135
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.00 E-value=6.9e-10 Score=120.81 Aligned_cols=54 Identities=30% Similarity=0.320 Sum_probs=42.1
Q ss_pred cCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 702 k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
..++.+|++++|.+.+++.+...... ....++||+||||||||++|++++..++
T Consensus 17 ~~~~~~f~~i~G~~~~~~~l~~~~~~------------~~~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 17 TRPVFPFSAIVGQEDMKLALLLTAVD------------PGIGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp -CCCCCGGGSCSCHHHHHHHHHHHHC------------GGGCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCCCCCchhccChHHHHHHHHHHhhC------------CCCceEEEECCCCccHHHHHHHHHHhCc
Confidence 34677899999999988776544321 1124699999999999999999999986
No 136
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.00 E-value=1.1e-09 Score=119.23 Aligned_cols=129 Identities=10% Similarity=-0.001 Sum_probs=90.4
Q ss_pred CCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHH
Q psy11009 161 PGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREA 240 (863)
Q Consensus 161 ~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~ 240 (863)
+.+.||||||+|.+.. ...+.|+..|+.... ++.+|.+||.++.+++++.+|++ .|.+++|+.++...
T Consensus 132 ~~~~vliiDE~~~l~~--------~~~~~Ll~~le~~~~---~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~ 199 (353)
T 1sxj_D 132 PPYKIIILDEADSMTA--------DAQSALRRTMETYSG---VTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAID 199 (353)
T ss_dssp CSCEEEEETTGGGSCH--------HHHHHHHHHHHHTTT---TEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHH
T ss_pred CCceEEEEECCCccCH--------HHHHHHHHHHHhcCC---CceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHH
Confidence 4678999999998854 234667766654432 56777789999999999999997 89999999999999
Q ss_pred HHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHH
Q psy11009 241 LLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALA 318 (863)
Q Consensus 241 IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~ 318 (863)
+++..+....+. ++-.++.|+..+.|. ...+.+++..++..+-+.. ....|+.+|+..++.
T Consensus 200 ~l~~~~~~~~~~i~~~~l~~l~~~~~G~-~r~~~~~l~~~~~~~~~~~----------------~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 200 RLRFISEQENVKCDDGVLERILDISAGD-LRRGITLLQSASKGAQYLG----------------DGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHHHHTTTCCCCHHHHHHHHHHTSSC-HHHHHHHHHHTHHHHHHHC----------------SCCCCCHHHHHHHHT
T ss_pred HHHHHHHHhCCCCCHHHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCCc----------------cCccccHHHHHHHhC
Confidence 999988543332 234578889888763 4444455555544432221 012588888876654
No 137
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.99 E-value=6e-10 Score=121.89 Aligned_cols=140 Identities=14% Similarity=0.044 Sum_probs=93.4
Q ss_pred CcCCCcccccccccccc-------------cchhcccchhhhccCcchhHHHHHHHh-----hhhhHHHHHHHHhhcccc
Q psy11009 91 PVVGSGTYLKHKSPIKM-------------NFLSLVLPLLAEEHGKLKFKEAITLAL-----TVGSSLNLYRSITNRGFY 152 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-------------~~~~~~~~~l~~~~gk~s~~e~~~~~~-----~vg~se~~~r~i~~~~~~ 152 (863)
|.||||||++++.+++. .|+.+++..+.... .+...+...+ ..|.+...++.+|.+..
T Consensus 52 GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~---~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~- 127 (318)
T 3te6_A 52 NADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMD---ALYEKIWFAISKENLCGDISLEALNFYITNVP- 127 (318)
T ss_dssp CCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--H---HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC-
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHH---HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh-
Confidence 99999999999999873 34455544432110 0111111111 12445667777776420
Q ss_pred eeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHH----Hhhccc-eE
Q psy11009 153 IEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEA----LRRRLE-KR 227 (863)
Q Consensus 153 l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~A----llRRFD-~~ 227 (863)
.....|+||||||+|.|. ..+++..|+.+.. ....+++||+.+|..+..+.. ++.||+ ..
T Consensus 128 -----~~~~~~~ii~lDE~d~l~-------~q~~L~~l~~~~~---~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~ 192 (318)
T 3te6_A 128 -----KAKKRKTLILIQNPENLL-------SEKILQYFEKWIS---SKNSKLSIICVGGHNVTIREQINIMPSLKAHFTE 192 (318)
T ss_dssp -----GGGSCEEEEEEECCSSSC-------CTHHHHHHHHHHH---CSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEE
T ss_pred -----hccCCceEEEEecHHHhh-------cchHHHHHHhccc---ccCCcEEEEEEecCcccchhhcchhhhccCCceE
Confidence 134679999999999998 1345566665543 233379999999999875554 455998 68
Q ss_pred EEecCCCHHHHHHHHHHHhccC
Q psy11009 228 IYIPLPSKAGREALLKINLKEV 249 (863)
Q Consensus 228 I~i~lPd~~~R~~IL~~~l~~~ 249 (863)
|.|++++.++..+|++..+...
T Consensus 193 i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 193 IKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp EECCCCCHHHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999999999998653
No 138
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.98 E-value=2.8e-09 Score=116.88 Aligned_cols=103 Identities=27% Similarity=0.302 Sum_probs=73.6
Q ss_pred hhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc
Q psy11009 698 DMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777 (863)
Q Consensus 698 ~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~ 777 (863)
.|++++++.+|++++|.+.+++.+...+.. ....+.++.+++|+||||||||+||+++|+.++.++...++..
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~-------~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~ 86 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEA-------AKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV 86 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHH-------HHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHH-------HHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence 578888999999999999999988876631 1112345578999999999999999999999999887776654
Q ss_pred ccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 778 LTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 778 l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
+.. ...+..++.. ....+|+||||++.+.+
T Consensus 87 ~~~------~~~l~~~~~~--~~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 87 LVK------QGDMAAILTS--LERGDVLFIDEIHRLNK 116 (334)
T ss_dssp CCS------HHHHHHHHHH--CCTTCEEEEETGGGCCH
T ss_pred hcC------HHHHHHHHHH--ccCCCEEEEcchhhcCH
Confidence 421 1122223322 23578999999998853
No 139
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=3.3e-09 Score=115.98 Aligned_cols=133 Identities=19% Similarity=0.242 Sum_probs=90.2
Q ss_pred ccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh------CCcEEEEecccccc
Q psy11009 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC------GTTFFNVCSSTLTS 780 (863)
Q Consensus 707 ~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el------~~~~i~vs~s~l~~ 780 (863)
..++++|.+...+.+.+++...+ . +..+..++|+||||||||++++++++.+ +.+++.+++.....
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~------~--~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~ 89 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLY------R--EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDT 89 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGG------G--TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHH------c--CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCC
Confidence 34789999999999988663111 1 2344689999999999999999999998 88999999764321
Q ss_pred c----------------ccch-hHHHHHHHHHHHHhC-CCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCC
Q psy11009 781 K----------------YRGE-SEKLVRLLFEMARFY-APSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSS 842 (863)
Q Consensus 781 ~----------------~~Ge-~e~~ir~lf~~A~~~-~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~ 842 (863)
. ..+. .......++...... .|++|||||++.+....+ ..++..|+..++.+
T Consensus 90 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~-- 159 (386)
T 2qby_A 90 PYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEV-- 159 (386)
T ss_dssp HHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSC--
T ss_pred HHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhc--
Confidence 1 0111 223344455544443 389999999999975421 13566777777654
Q ss_pred CCCCCCceEEEEecCCCC
Q psy11009 843 AEDSSKVVMVLAATNFPW 860 (863)
Q Consensus 843 ~~~~~~~VvVIaTTN~P~ 860 (863)
....+.+|++||.+.
T Consensus 160 ---~~~~~~~I~~~~~~~ 174 (386)
T 2qby_A 160 ---NKSKISFIGITNDVK 174 (386)
T ss_dssp ---CC--EEEEEEESCGG
T ss_pred ---CCCeEEEEEEECCCC
Confidence 123578888888763
No 140
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.97 E-value=1e-09 Score=127.46 Aligned_cols=190 Identities=12% Similarity=0.012 Sum_probs=111.7
Q ss_pred cceeEeeecccccccCcCCCcccccccccccc---cchhcccchhhhccCcchhHHHHHHHhhhhhH--HHHHHHHhhcc
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM---NFLSLVLPLLAEEHGKLKFKEAITLALTVGSS--LNLYRSITNRG 150 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~s--e~~~r~i~~~~ 150 (863)
.++|+| |.||||||++|+++++. +|+.+..+.++... + +.-.+... ...++.+|...
T Consensus 78 ~~lLL~---------GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~----~-----~~~~i~~~~~~~~~~~~~~~~ 139 (516)
T 1sxj_A 78 RAAMLY---------GPPGIGKTTAAHLVAQELGYDILEQNASDVRSKT----L-----LNAGVKNALDNMSVVGYFKHN 139 (516)
T ss_dssp SEEEEE---------CSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHH----H-----HHHTGGGGTTBCCSTTTTTC-
T ss_pred cEEEEE---------CCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHH----H-----HHHHHHHHhccccHHHHHhhh
Confidence 478888 99999999999999983 34444443332110 0 00000000 00122222211
Q ss_pred cceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEe
Q psy11009 151 FYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYI 230 (863)
Q Consensus 151 ~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i 230 (863)
.. ......+|+||||||+|.+..... ..++.|+..++.. ...|++|+++..+..|.+ ++|+...|.|
T Consensus 140 ~~---~~~~~~~~~vliIDEid~l~~~~~-----~~l~~L~~~l~~~---~~~iIli~~~~~~~~l~~--l~~r~~~i~f 206 (516)
T 1sxj_A 140 EE---AQNLNGKHFVIIMDEVDGMSGGDR-----GGVGQLAQFCRKT---STPLILICNERNLPKMRP--FDRVCLDIQF 206 (516)
T ss_dssp ------CCSSTTSEEEEECSGGGCCTTST-----THHHHHHHHHHHC---SSCEEEEESCTTSSTTGG--GTTTSEEEEC
T ss_pred hh---hhhccCCCeEEEEECCCccchhhH-----HHHHHHHHHHHhc---CCCEEEEEcCCCCccchh--hHhceEEEEe
Confidence 00 011346799999999999976431 2345555555432 225777766665555654 4566679999
Q ss_pred cCCCHHHHHHHHHHHhc--cCCCCCcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCC
Q psy11009 231 PLPSKAGREALLKINLK--EVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPV 308 (863)
Q Consensus 231 ~lPd~~~R~~IL~~~l~--~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~V 308 (863)
++|+.+++.++|+..+. ++.+++ -.+..|+..+. ++++.+++.....+.. ...|
T Consensus 207 ~~~~~~~~~~~L~~i~~~~~~~i~~-~~l~~la~~s~----GdiR~~i~~L~~~~~~-------------------~~~I 262 (516)
T 1sxj_A 207 RRPDANSIKSRLMTIAIREKFKLDP-NVIDRLIQTTR----GDIRQVINLLSTISTT-------------------TKTI 262 (516)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCCT-THHHHHHHHTT----TCHHHHHHHHTHHHHH-------------------SSCC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHcC----CcHHHHHHHHHHHHhc-------------------CCCC
Confidence 99999999999988774 344443 33788888875 4666666554332221 2357
Q ss_pred CHHHHHHHHHHh
Q psy11009 309 SQRDFEEALARC 320 (863)
Q Consensus 309 t~~Df~~AL~~v 320 (863)
+.+++..++...
T Consensus 263 t~~~v~~~~~~~ 274 (516)
T 1sxj_A 263 NHENINEISKAW 274 (516)
T ss_dssp CTTHHHHHHHHH
T ss_pred chHHHHHHHHhh
Confidence 777777766543
No 141
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.97 E-value=1.7e-09 Score=110.43 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=66.6
Q ss_pred hhcCCC-Cccccccch---HHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEE
Q psy11009 700 VQKNPN-IRWDDIAEL---TDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFN 772 (863)
Q Consensus 700 ~~k~p~-~~~~dLiGl---~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~ 772 (863)
..++++ .+|++++|. ..+.+.+..++.. ...++++|+||||||||++|++++.++ +.+++.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~ 85 (242)
T 3bos_A 18 PVHLPDDETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFY 85 (242)
T ss_dssp ECCCCTTCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCCCCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 344444 789999872 4666666665421 134689999999999999999999987 478889
Q ss_pred EecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 773 VCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 773 vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
+++.++...+.... . ....+.+|||||++.+..
T Consensus 86 ~~~~~~~~~~~~~~--------~--~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 86 IPLGIHASISTALL--------E--GLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp EEGGGGGGSCGGGG--------T--TGGGSSEEEEETGGGGTT
T ss_pred EEHHHHHHHHHHHH--------H--hccCCCEEEEeccccccC
Confidence 99887765432111 1 123578999999999854
No 142
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.93 E-value=2.5e-09 Score=117.70 Aligned_cols=124 Identities=23% Similarity=0.236 Sum_probs=83.0
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh-----------CCcEEEEeccc
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC-----------GTTFFNVCSST 777 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el-----------~~~~i~vs~s~ 777 (863)
++++|.+...+.+..++... .. +..+++++|+||||||||++|+++++++ +.+++.+++..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~------~~--~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYF------VK--NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHH------HT--TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHH------Hc--CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 78999999999998877311 11 2344699999999999999999999998 89999999775
Q ss_pred cc-ccc-----------------cch-hHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHH-HHHHHHHH
Q psy11009 778 LT-SKY-----------------RGE-SEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRV-KSELLVQM 837 (863)
Q Consensus 778 l~-~~~-----------------~Ge-~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv-~~~LL~~l 837 (863)
.. +.+ .+. ....+..++....... .+|||||+|.+...+. ..+ +..|+...
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~--------~~~~l~~l~~~~ 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRG--------GDIVLYQLLRSD 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTT--------SHHHHHHHHTSS
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCC--------CceeHHHHhcCC
Confidence 43 110 111 1233444555444333 4999999999965321 112 33333221
Q ss_pred hcCCCCCCCCCceEEEEecCCC
Q psy11009 838 DGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 838 D~l~~~~~~~~~VvVIaTTN~P 859 (863)
..+.||+|||.+
T Consensus 163 ----------~~~~iI~~t~~~ 174 (384)
T 2qby_B 163 ----------ANISVIMISNDI 174 (384)
T ss_dssp ----------SCEEEEEECSST
T ss_pred ----------cceEEEEEECCC
Confidence 348889999987
No 143
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.91 E-value=5e-09 Score=114.87 Aligned_cols=169 Identities=13% Similarity=0.049 Sum_probs=109.3
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHH-----h-hhh----hHHHHHHHHhhcccceeeeccC
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLA-----L-TVG----SSLNLYRSITNRGFYIEDYEVS 159 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~-----~-~vg----~se~~~r~i~~~~~~l~~~~~~ 159 (863)
|.||||||++|+.+++. +. ..+......|.+. .|..... + .+. .....++.+++...+. ..
T Consensus 45 G~~G~GKT~la~~la~~l~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~ 116 (373)
T 1jr3_A 45 GTRGVGKTSIARLLAKGLNC---ETGITATPCGVCD-NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYA----PA 116 (373)
T ss_dssp SCTTSSHHHHHHHHHHHHSC---TTCSCSSCCSSSH-HHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSC----CS
T ss_pred CCCCCCHHHHHHHHHHHhCC---CCCCCCCCCcccH-HHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhc----cc
Confidence 99999999999999884 21 1111111112111 1110000 0 000 1123456666543221 13
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
..++.||||||+|.+.. ...+.|+..++.. ..++++|++||.+..+++++.+|+ ..+.+++|+.++..
T Consensus 117 ~~~~~vliiDe~~~l~~--------~~~~~Ll~~le~~---~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~ 184 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSR--------HSFNALLKTLEEP---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIR 184 (373)
T ss_dssp SSSSEEEEEECGGGSCH--------HHHHHHHHHHHSC---CSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHH
T ss_pred cCCeEEEEEECcchhcH--------HHHHHHHHHHhcC---CCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHH
Confidence 45689999999998842 3456677777543 337899999999999999999998 78999999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDAS 280 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aa 280 (863)
.+++.++...... .+-.+..|+..+.| +..++.+++..+.
T Consensus 185 ~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~l~~~~ 225 (373)
T 1jr3_A 185 HQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLTDQAI 225 (373)
T ss_dssp HHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHH
Confidence 9999998654333 22336788999977 6677777776653
No 144
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=98.91 E-value=9.7e-10 Score=119.54 Aligned_cols=134 Identities=19% Similarity=0.153 Sum_probs=87.2
Q ss_pred hhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 697 ~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
..|.+++.+..+++++|.+++++.+...+.. ..++||+||||||||++|+++|+.++.+++.+++.
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~ 80 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFT 80 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecC
Confidence 4577778888889999999999988876631 24899999999999999999999999999998873
Q ss_pred c------ccccccchhHHHHHHHHHHH-HhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCC-----CC
Q psy11009 777 T------LTSKYRGESEKLVRLLFEMA-RFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSS-----AE 844 (863)
Q Consensus 777 ~------l~~~~~Ge~e~~ir~lf~~A-~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~-----~~ 844 (863)
. +.+....... ...|... .....+||||||+|.+.+ .+++.|+..|+...- ..
T Consensus 81 ~~~~~~~l~g~~~~~~~---~~~~~~~~g~l~~~vl~iDEi~~~~~------------~~~~~Ll~~l~~~~~~~~g~~~ 145 (331)
T 2r44_A 81 PDLLPSDLIGTMIYNQH---KGNFEVKKGPVFSNFILADEVNRSPA------------KVQSALLECMQEKQVTIGDTTY 145 (331)
T ss_dssp TTCCHHHHHEEEEEETT---TTEEEEEECTTCSSEEEEETGGGSCH------------HHHHHHHHHHHHSEEEETTEEE
T ss_pred CCCChhhcCCceeecCC---CCceEeccCcccccEEEEEccccCCH------------HHHHHHHHHHhcCceeeCCEEE
Confidence 1 2111110000 0000000 000137999999998743 356677777763210 00
Q ss_pred CCCCceEEEEecCCC
Q psy11009 845 DSSKVVMVLAATNFP 859 (863)
Q Consensus 845 ~~~~~VvVIaTTN~P 859 (863)
.....++||+|+|.+
T Consensus 146 ~~~~~~~viat~np~ 160 (331)
T 2r44_A 146 PLDNPFLVLATQNPV 160 (331)
T ss_dssp ECCSSCEEEEEECTT
T ss_pred ECCCCEEEEEecCCC
Confidence 112346788888844
No 145
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.89 E-value=5.5e-09 Score=111.65 Aligned_cols=95 Identities=11% Similarity=0.003 Sum_probs=71.9
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
...+.||||||+|.+.. ...+.|+..++ .+..++++|++||.++.+++++.+|+. .|.|++|+.+++.
T Consensus 100 ~~~~~vliiDe~~~l~~--------~~~~~L~~~le---~~~~~~~~i~~~~~~~~l~~~l~sr~~-~i~~~~~~~~~~~ 167 (319)
T 2chq_A 100 GAPFKIIFLDEADALTA--------DAQAALRRTME---MYSKSCRFILSCNYVSRIIEPIQSRCA-VFRFKPVPKEAMK 167 (319)
T ss_dssp SCCCEEEEEETGGGSCH--------HHHHTTGGGTS---SSSSSEEEEEEESCGGGSCHHHHTTCE-EEECCCCCHHHHH
T ss_pred CCCceEEEEeCCCcCCH--------HHHHHHHHHHH---hcCCCCeEEEEeCChhhcchHHHhhCe-EEEecCCCHHHHH
Confidence 35689999999999853 22344544443 333478999999999999999999997 8999999999999
Q ss_pred HHHHHHhccCCCC-CcccHHHHhhhCCC
Q psy11009 240 ALLKINLKEVKVD-PAVDLTHIASQLDG 266 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~dvdl~~LA~~TeG 266 (863)
.+++.++.+..+. ++-.++.|+..+.|
T Consensus 168 ~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 168 KRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp HHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999998655443 23346677776654
No 146
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.87 E-value=1.7e-08 Score=110.90 Aligned_cols=131 Identities=14% Similarity=0.162 Sum_probs=84.9
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh----CCcEEEEecccccccc--
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC----GTTFFNVCSSTLTSKY-- 782 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el----~~~~i~vs~s~l~~~~-- 782 (863)
++++|.+...+.+..++.. ...+.....++++|+||||||||+++++++..+ +..++++++....+..
T Consensus 17 ~~l~gr~~~~~~l~~~l~~------~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGN------WLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAI 90 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHH------HHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHH
T ss_pred CCCCChHHHHHHHHHHHHH------HHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHH
Confidence 7899999999999887731 111111112389999999999999999999998 6789999876543210
Q ss_pred --------------cch-hHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCC
Q psy11009 783 --------------RGE-SEKLVRLLFEMAR-FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDS 846 (863)
Q Consensus 783 --------------~Ge-~e~~ir~lf~~A~-~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~ 846 (863)
.+. .......+..... ...|.||||||+|.+. ...+..|+..++.+... .
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~------------~~~~~~L~~~~~~~~~~--~ 156 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA------------PDILSTFIRLGQEADKL--G 156 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC------------HHHHHHHHHHTTCHHHH--S
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc------------hHHHHHHHHHHHhCCCC--C
Confidence 011 1222223333222 2458899999999881 23566777776543210 0
Q ss_pred CCceEEEEecCCC
Q psy11009 847 SKVVMVLAATNFP 859 (863)
Q Consensus 847 ~~~VvVIaTTN~P 859 (863)
...+.||++||.+
T Consensus 157 ~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 157 AFRIALVIVGHND 169 (389)
T ss_dssp SCCEEEEEEESST
T ss_pred cCCEEEEEEECCc
Confidence 1247888888877
No 147
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.85 E-value=2.5e-09 Score=115.77 Aligned_cols=144 Identities=10% Similarity=0.031 Sum_probs=91.9
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEec
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKM 170 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDE 170 (863)
|.||||||++|+++++. +..+.+...... .| ...++..+...... ......++||||||
T Consensus 55 G~~G~GKT~la~~la~~----l~~~~~~i~~~~------------~~--~~~i~~~~~~~~~~---~~~~~~~~vliiDE 113 (324)
T 3u61_B 55 PSPGTGKTTVAKALCHD----VNADMMFVNGSD------------CK--IDFVRGPLTNFASA---ASFDGRQKVIVIDE 113 (324)
T ss_dssp SSTTSSHHHHHHHHHHH----TTEEEEEEETTT------------CC--HHHHHTHHHHHHHB---CCCSSCEEEEEEES
T ss_pred CcCCCCHHHHHHHHHHH----hCCCEEEEcccc------------cC--HHHHHHHHHHHHhh---cccCCCCeEEEEEC
Confidence 88999999999999984 222322222111 11 22333333221000 01123789999999
Q ss_pred ccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccC-
Q psy11009 171 FSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEV- 249 (863)
Q Consensus 171 iDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~- 249 (863)
+|.+.. ....+.|+..++.... ++.+|++||.++.+++++.+||. .|+|+.|+.++|.+|++.++..+
T Consensus 114 i~~l~~-------~~~~~~L~~~le~~~~---~~~iI~~~n~~~~l~~~l~sR~~-~i~~~~~~~~e~~~il~~~~~~l~ 182 (324)
T 3u61_B 114 FDRSGL-------AESQRHLRSFMEAYSS---NCSIIITANNIDGIIKPLQSRCR-VITFGQPTDEDKIEMMKQMIRRLT 182 (324)
T ss_dssp CCCGGG-------HHHHHHHHHHHHHHGG---GCEEEEEESSGGGSCTTHHHHSE-EEECCCCCHHHHHHHHHHHHHHHH
T ss_pred CcccCc-------HHHHHHHHHHHHhCCC---CcEEEEEeCCccccCHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999862 2345667666654432 57889999999999999999996 69999999999888776654321
Q ss_pred ------CCC-Cc-ccHHHHhhhCCC
Q psy11009 250 ------KVD-PA-VDLTHIASQLDG 266 (863)
Q Consensus 250 ------~l~-~d-vdl~~LA~~TeG 266 (863)
.+. ++ -.++.|+..+.|
T Consensus 183 ~~~~~~~~~~~~~~~~~~l~~~~~g 207 (324)
T 3u61_B 183 EICKHEGIAIADMKVVAALVKKNFP 207 (324)
T ss_dssp HHHHHHTCCBSCHHHHHHHHHHTCS
T ss_pred HHHHHcCCCCCcHHHHHHHHHhCCC
Confidence 122 12 335667777654
No 148
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.83 E-value=2.2e-09 Score=143.57 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=65.1
Q ss_pred CCCcEEEEEeccccccccc-ccchhHhHHHHHHHHhhccCCCC-------CCeEEEEccCCCC-----CccHHHhhccce
Q psy11009 160 PPGPTLAVAKMFSSLAVQK-LLRGSKTFRTLCIHKYRLLTFPS-------TPVQYSIQKGIPW-----DIDEALRRRLEK 226 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R-~~~~~~~v~n~lL~~ld~~~~~~-------~~VivIaATN~p~-----~LD~AllRRFD~ 226 (863)
..+++||||||+|.....+ ++.....++++++. ..++.... .+|.+|||||.|. .||+||+||| .
T Consensus 1334 ~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le-~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~ 1411 (2695)
T 4akg_A 1334 DIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLME-KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-A 1411 (2695)
T ss_dssp SSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHH-TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-E
T ss_pred CCceEEEEecccccccccccCchhHHHHHHHHHh-cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-e
Confidence 4568999999999865554 22334445555542 22332211 2589999999995 8999999999 8
Q ss_pred EEEecCCCHHHHHHHHHHHhcc
Q psy11009 227 RIYIPLPSKAGREALLKINLKE 248 (863)
Q Consensus 227 ~I~i~lPd~~~R~~IL~~~l~~ 248 (863)
.|+|+.|+.+++..|+..+++.
T Consensus 1412 vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1412 ILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHH
Confidence 8999999999999999999854
No 149
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=1.3e-08 Score=109.17 Aligned_cols=104 Identities=10% Similarity=0.071 Sum_probs=76.8
Q ss_pred CCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHH
Q psy11009 161 PGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREA 240 (863)
Q Consensus 161 ~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~ 240 (863)
.+++||||||+|.+.. ...+.|+..|+... .++.+|++||.++.+++++.+|+. .++|++|+.++...
T Consensus 109 ~~~~vliiDe~~~l~~--------~~~~~L~~~le~~~---~~~~~i~~~~~~~~l~~~l~sr~~-~~~~~~l~~~~~~~ 176 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ--------DAQQALRRTMEMFS---SNVRFILSCNYSSKIIEPIQSRCA-IFRFRPLRDEDIAK 176 (327)
T ss_dssp CSCEEEEEETGGGSCH--------HHHHHHHHHHHHTT---TTEEEEEEESCGGGSCHHHHHTEE-EEECCCCCHHHHHH
T ss_pred CCCeEEEEeCCCcCCH--------HHHHHHHHHHHhcC---CCCeEEEEeCCccccCHHHHhhCc-EEEecCCCHHHHHH
Confidence 5689999999998843 23566766665432 267888899999999999999998 79999999999999
Q ss_pred HHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHH
Q psy11009 241 LLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCR 277 (863)
Q Consensus 241 IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~ 277 (863)
+++.++....+. ++-.++.|+..+.| +...+.+++.
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~ 213 (327)
T 1iqp_A 177 RLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQ 213 (327)
T ss_dssp HHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 999988654433 23346778887765 3344444443
No 150
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.82 E-value=7.7e-09 Score=110.75 Aligned_cols=165 Identities=12% Similarity=0.008 Sum_probs=102.5
Q ss_pred eeEeeecccccccCcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeee
Q psy11009 78 NLTFIFGSEFQSEPVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDY 156 (863)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~ 156 (863)
+|+| |.||+|||++|+.+++. +.-.+..+.+..+.+.. . ....++.++...... ..
T Consensus 45 ~ll~---------G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-----------~--~~~~i~~~~~~~~~~-~~ 101 (323)
T 1sxj_B 45 MIIS---------GMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD-----------R--GIDVVRNQIKHFAQK-KL 101 (323)
T ss_dssp EEEE---------CSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSC-----------C--SHHHHHTHHHHHHHB-CC
T ss_pred EEEE---------CcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccc-----------c--ChHHHHHHHHHHHhc-cc
Confidence 6778 99999999999999985 11111122222222110 0 122334444321000 00
Q ss_pred ccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHH
Q psy11009 157 EVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKA 236 (863)
Q Consensus 157 ~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~ 236 (863)
......++||||||+|.+.. ...+.|+..++... .++.+|++||.+..+++++.+|+. .+.|++|+.+
T Consensus 102 ~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le~~~---~~~~~il~~~~~~~l~~~l~sr~~-~i~~~~~~~~ 169 (323)
T 1sxj_B 102 HLPPGKHKIVILDEADSMTA--------GAQQALRRTMELYS---NSTRFAFACNQSNKIIEPLQSQCA-ILRYSKLSDE 169 (323)
T ss_dssp CCCTTCCEEEEEESGGGSCH--------HHHHTTHHHHHHTT---TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHH
T ss_pred cCCCCCceEEEEECcccCCH--------HHHHHHHHHHhccC---CCceEEEEeCChhhchhHHHhhce-EEeecCCCHH
Confidence 11134589999999998853 22455665555422 367888899999999999999997 8999999999
Q ss_pred HHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHH
Q psy11009 237 GREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRD 278 (863)
Q Consensus 237 ~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~ 278 (863)
++.++++.++....+. .+-.++.|+..+.|- ...+.+++..
T Consensus 170 ~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~-~r~a~~~l~~ 211 (323)
T 1sxj_B 170 DVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGD-MRQAINNLQS 211 (323)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCC-HHHHHHHHHH
Confidence 9999999988543332 233467788888653 3333333333
No 151
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.80 E-value=4.7e-09 Score=105.78 Aligned_cols=101 Identities=20% Similarity=0.277 Sum_probs=62.5
Q ss_pred cCCCCccccccchHH----HHHHHHHHhhcCCCChhhhhccC--CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEE
Q psy11009 702 KNPNIRWDDIAELTD----AKRLLEEAVVLPMWMPEFFKGIR--RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFN 772 (863)
Q Consensus 702 k~p~~~~~dLiGl~~----vk~~L~e~V~~pl~~pe~~~~~~--~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~ 772 (863)
++.+.+|+++++.+. +.+.+..++. ... .++++++|+||||||||++|++++..+ +.+++.
T Consensus 18 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~ 87 (202)
T 2w58_A 18 EILRASLSDVDLNDDGRIKAIRFAERFVA----------EYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLI 87 (202)
T ss_dssp GGGCCCTTSSCCSSHHHHHHHHHHHHHHH----------HCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred HHHcCCHhhccCCChhHHHHHHHHHHHHH----------HhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 345678999987553 3333443332 111 123799999999999999999999988 678888
Q ss_pred Eecccccccccchh-HHHHHHHHHHHHhCCCeEEEEcCCCccc
Q psy11009 773 VCSSTLTSKYRGES-EKLVRLLFEMARFYAPSTIFIDEIDSLC 814 (863)
Q Consensus 773 vs~s~l~~~~~Ge~-e~~ir~lf~~A~~~~p~ILfIDEID~l~ 814 (863)
+++.++...+.... ......++.... .+.+|||||++...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~lilDei~~~~ 128 (202)
T 2w58_A 88 VYVPELFRELKHSLQDQTMNEKLDYIK--KVPVLMLDDLGAEA 128 (202)
T ss_dssp EEHHHHHHHHHHC---CCCHHHHHHHH--HSSEEEEEEECCC-
T ss_pred EEhHHHHHHHHHHhccchHHHHHHHhc--CCCEEEEcCCCCCc
Confidence 88877654322110 000112222222 25699999997753
No 152
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=98.79 E-value=3.8e-09 Score=122.26 Aligned_cols=103 Identities=20% Similarity=0.259 Sum_probs=65.4
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC--CcEEEEecc-----ccccc
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSS-----TLTSK 781 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~--~~~i~vs~s-----~l~~~ 781 (863)
..++|.+++++.+...+. ...++||+||||||||++|+++|..++ .+|..+.+. ++.+.
T Consensus 22 ~~ivGq~~~i~~l~~al~--------------~~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHH--------------HTCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHh--------------cCCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 348999999988877652 124899999999999999999999884 355555443 23332
Q ss_pred ccchhHHHHHHHHHHHHhC---CCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh
Q psy11009 782 YRGESEKLVRLLFEMARFY---APSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 782 ~~Ge~e~~ir~lf~~A~~~---~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD 838 (863)
+.+..... ...|..+... .++|||||||+.+. ..+++.|+..|+
T Consensus 88 ~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~------------~~~q~~LL~~le 134 (500)
T 3nbx_X 88 LSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAG------------PAILNTLLTAIN 134 (500)
T ss_dssp BC-----------CBCCTTSGGGCSEEEEESGGGCC------------HHHHHHHHHHHH
T ss_pred ccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhc------------HHHHHHHHHHHH
Confidence 22221111 1122211111 46799999997653 347788888886
No 153
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.70 E-value=4.2e-08 Score=106.64 Aligned_cols=115 Identities=6% Similarity=0.068 Sum_probs=77.9
Q ss_pred chHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh------CCcEEEEecccccccccchh
Q psy11009 713 ELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC------GTTFFNVCSSTLTSKYRGES 786 (863)
Q Consensus 713 Gl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el------~~~~i~vs~s~l~~~~~Ge~ 786 (863)
|++++.+.|...+. . ++ ...+||+||||||||++|+++|+.+ ...++.++++.- .. .
T Consensus 1 g~~~~~~~L~~~i~----------~-~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~---~~--~ 63 (305)
T 2gno_A 1 GAKDQLETLKRIIE----------K-SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE---NI--G 63 (305)
T ss_dssp ---CHHHHHHHHHH----------T-CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS---CB--C
T ss_pred ChHHHHHHHHHHHH----------C-CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC---CC--C
Confidence 56777777777663 1 12 3589999999999999999999875 346777776421 11 2
Q ss_pred HHHHHHHHHHHHhC----CCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 787 EKLVRLLFEMARFY----APSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 787 e~~ir~lf~~A~~~----~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
-..++.+.+.+... ...|+||||+|.+.. ...+.||+.|+. +...+++|.+||.|..|
T Consensus 64 id~ir~li~~~~~~p~~~~~kvviIdead~lt~------------~a~naLLk~LEe------p~~~t~fIl~t~~~~kl 125 (305)
T 2gno_A 64 IDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQ------------QAANAFLKALEE------PPEYAVIVLNTRRWHYL 125 (305)
T ss_dssp HHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCH------------HHHHHTHHHHHS------CCTTEEEEEEESCGGGS
T ss_pred HHHHHHHHHHHhhccccCCceEEEeccHHHhCH------------HHHHHHHHHHhC------CCCCeEEEEEECChHhC
Confidence 33456777776533 247999999999843 246788988863 33456777777877654
No 154
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.69 E-value=3.2e-08 Score=107.99 Aligned_cols=107 Identities=12% Similarity=0.037 Sum_probs=77.0
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGRE 239 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~ 239 (863)
...|.||+|||+|.+- ....+.|+..|..... ++.+|.+||.++.+++++.+|+ .++.|++|+.+++.
T Consensus 132 ~~~~~vlilDE~~~L~--------~~~~~~L~~~le~~~~---~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~ 199 (354)
T 1sxj_E 132 AHRYKCVIINEANSLT--------KDAQAALRRTMEKYSK---NIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEIS 199 (354)
T ss_dssp --CCEEEEEECTTSSC--------HHHHHHHHHHHHHSTT---TEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHH
T ss_pred CCCCeEEEEeCccccC--------HHHHHHHHHHHHhhcC---CCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHH
Confidence 3478899999999953 2234566666654332 5788889999999999999999 88999999999999
Q ss_pred HHHHHHhccCCCC-C-cccHHHHhhhCCCCCHHHHHHHHHHH
Q psy11009 240 ALLKINLKEVKVD-P-AVDLTHIASQLDGYSGADITNVCRDA 279 (863)
Q Consensus 240 ~IL~~~l~~~~l~-~-dvdl~~LA~~TeG~SGADI~~lv~~A 279 (863)
.+++..+.+..+. + +-.++.|+..+.| +-.++.+++..+
T Consensus 200 ~~l~~~~~~~~~~~~~~~~l~~i~~~~~G-~~r~a~~~l~~~ 240 (354)
T 1sxj_E 200 TILSDVVTNERIQLETKDILKRIAQASNG-NLRVSLLMLESM 240 (354)
T ss_dssp HHHHHHHHHHTCEECCSHHHHHHHHHHTT-CHHHHHHHHTHH
T ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 9999988544332 2 3446788887755 444444444443
No 155
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.68 E-value=7.1e-08 Score=106.97 Aligned_cols=142 Identities=9% Similarity=-0.014 Sum_probs=96.9
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCC--CCeEEEEccCCCC---Ccc---HHHhhccceEEEec
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPS--TPVQYSIQKGIPW---DID---EALRRRLEKRIYIP 231 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~--~~VivIaATN~p~---~LD---~AllRRFD~~I~i~ 231 (863)
..+|+||+|||+|.+...+. ....+...++..++.....+ .++.||++||.++ .++ +.+.+||..+|.++
T Consensus 136 ~~~~~llvlDe~~~l~~~~~--~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~ 213 (412)
T 1w5s_A 136 ENHYLLVILDEFQSMLSSPR--IAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLP 213 (412)
T ss_dssp HTCEEEEEEESTHHHHSCTT--SCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECC
T ss_pred cCCeEEEEEeCHHHHhhccC--cchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeC
Confidence 35799999999999864321 12344455555554433112 4799999998876 456 77778888889999
Q ss_pred CCCHHHHHHHHHHHhccCCC---CCcccHHHHhhhCC------CCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCcc
Q psy11009 232 LPSKAGREALLKINLKEVKV---DPAVDLTHIASQLD------GYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKE 302 (863)
Q Consensus 232 lPd~~~R~~IL~~~l~~~~l---~~dvdl~~LA~~Te------G~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~ 302 (863)
+++.++..+|++.++..... -.+-.+..++..+. | ....+..+|+.|+..+..+.
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~--------------- 277 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMG--------------- 277 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTT---------------
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcC---------------
Confidence 99999999999887742111 12334677888887 6 35577788888776665543
Q ss_pred ccCCCCCHHHHHHHHHHhc
Q psy11009 303 ELDLPVSQRDFEEALARCN 321 (863)
Q Consensus 303 ~~~~~Vt~~Df~~AL~~v~ 321 (863)
...++.+++..++....
T Consensus 278 --~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 278 --RDSLSEDLVRKAVSENE 294 (412)
T ss_dssp --CSSCCHHHHHHHHHHC-
T ss_pred --CCCCCHHHHHHHHHHHh
Confidence 34688888888876543
No 156
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.67 E-value=1.8e-08 Score=110.14 Aligned_cols=111 Identities=20% Similarity=0.233 Sum_probs=64.2
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCc--EEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccccCCC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTT--FFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGS 819 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~--~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~ 819 (863)
...++|+||||||||+||..+|...+.+ |+.+...+..+.+..+.+..+..+++...... +||||+++.+......
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~--LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR--VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS--EEEEECCTTTC-----
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC--EEEEeccccccccccc
Confidence 3467999999999999999999876555 44442233333333445566666666665444 9999999999654322
Q ss_pred CchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCC
Q psy11009 820 ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNF 858 (863)
Q Consensus 820 ~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~ 858 (863)
.+......+.+.+++..|+++.... .+.+|++||.
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k~~----gvtVIlttnp 235 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAASR----GCVVIASLNP 235 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHHHH----TCEEEEECCC
T ss_pred ccccchHHHHHHHHHHHHHHHHhhC----CCEEEEEeCC
Confidence 1111111233455555554443221 2567788884
No 157
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.65 E-value=5e-09 Score=135.02 Aligned_cols=112 Identities=10% Similarity=-0.036 Sum_probs=86.6
Q ss_pred cc--eeEeeecccccccCcCCCccccccccccc---cc-----chhccc--chhhh-ccCcchhHHHHHHHhhhhh----
Q psy11009 76 IG--NLTFIFGSEFQSEPVVGSGTYLKHKSPIK---MN-----FLSLVL--PLLAE-EHGKLKFKEAITLALTVGS---- 138 (863)
Q Consensus 76 ~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~---~~-----~~~~~~--~~l~~-~~gk~s~~e~~~~~~~vg~---- 138 (863)
.| +|+| |.|||||||+|+.++. .| ||+... |.++. ..|-= ++.++++
T Consensus 1081 ~g~~~l~~---------G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d-------~~~~~~~~~~~ 1144 (1706)
T 3cmw_A 1081 MGRIVEIY---------GPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVD-------IDNLLCSQPDT 1144 (1706)
T ss_dssp TTSEEEEE---------CSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCC-------GGGCEEECCSS
T ss_pred CCCEEEEE---------cCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCC-------HHHHhhccccc
Confidence 45 8899 9999999999998876 56 999875 45531 11211 3566899
Q ss_pred HHHHHHHHhhcccceeeeccCCCCcEEEEEecccccccccc---------cchhHhHHHHHHHHhhccCCCCCCeEEEEc
Q psy11009 139 SLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKL---------LRGSKTFRTLCIHKYRLLTFPSTPVQYSIQ 209 (863)
Q Consensus 139 se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~---------~~~~~~v~n~lL~~ld~~~~~~~~VivIaA 209 (863)
+|+.+|.+|.++ ....||+|||||+|+|+++|. .+...|+++++|.+|+++.... +|+|| +
T Consensus 1145 ~e~~l~~~~~~a--------r~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~-~v~v~-~ 1214 (1706)
T 3cmw_A 1145 GEQALEICDALA--------RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQS-NTLLI-F 1214 (1706)
T ss_dssp HHHHHHHHHHHH--------HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHT-TCEEE-E
T ss_pred hHHHHHHHHHHH--------HhcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHHhhhccC-CeEEE-E
Confidence 999999999764 567799999999999999852 1445678999999999977655 78888 7
Q ss_pred cCCC
Q psy11009 210 KGIP 213 (863)
Q Consensus 210 TN~p 213 (863)
||+.
T Consensus 1215 ~n~~ 1218 (1706)
T 3cmw_A 1215 INQI 1218 (1706)
T ss_dssp EECE
T ss_pred eccc
Confidence 8873
No 158
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.64 E-value=9.8e-08 Score=104.57 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCc------------------------
Q psy11009 714 LTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTT------------------------ 769 (863)
Q Consensus 714 l~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~------------------------ 769 (863)
+.++.+.+...+. .++.+..+||+||||+|||++|+++|+.+...
T Consensus 7 ~~~~~~~l~~~i~-----------~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQ-----------AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHH-----------TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHH-----------cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4555566665542 23444679999999999999999999998532
Q ss_pred EEEEecccccccccchhHHHHHHHHHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCC
Q psy11009 770 FFNVCSSTLTSKYRGESEKLVRLLFEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAED 845 (863)
Q Consensus 770 ~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~ 845 (863)
++.+.+.+- +.. .....++.+.+.+.. ....|++|||+|.+.. ...+.||+.|+.
T Consensus 76 ~~~~~~~~~-~~~--~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~------------~a~naLLk~lEe------ 134 (334)
T 1a5t_A 76 YYTLAPEKG-KNT--LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD------------AAANALLKTLEE------ 134 (334)
T ss_dssp EEEECCCTT-CSS--BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH------------HHHHHHHHHHTS------
T ss_pred EEEEecccc-CCC--CCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH------------HHHHHHHHHhcC------
Confidence 344433210 001 122345666666543 2468999999999843 246778888853
Q ss_pred CCCceEEEEecCCCCCC
Q psy11009 846 SSKVVMVLAATNFPWEG 862 (863)
Q Consensus 846 ~~~~VvVIaTTN~P~~I 862 (863)
+...+++|.+||.|+.|
T Consensus 135 p~~~~~~Il~t~~~~~l 151 (334)
T 1a5t_A 135 PPAETWFFLATREPERL 151 (334)
T ss_dssp CCTTEEEEEEESCGGGS
T ss_pred CCCCeEEEEEeCChHhC
Confidence 34457788888888765
No 159
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=98.63 E-value=4.2e-08 Score=103.25 Aligned_cols=183 Identities=10% Similarity=0.026 Sum_probs=94.7
Q ss_pred cceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceee
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIED 155 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~ 155 (863)
..+|+| |.||||||++|+++++.-. .-..|.++.+.+.++ +....+...|.....+.+.... ..+.
T Consensus 30 ~~vll~---------G~~GtGKt~la~~i~~~~~-~~~~~~~~v~~~~~~--~~~~~~~l~g~~~~~~~g~~~~--~~~~ 95 (265)
T 2bjv_A 30 KPVLII---------GERGTGKELIASRLHYLSS-RWQGPFISLNCAALN--ENLLDSELFGHEAGAFTGAQKR--HPGR 95 (265)
T ss_dssp SCEEEE---------CCTTSCHHHHHHHHHHTST-TTTSCEEEEEGGGSC--HHHHHHHHHCCC---------C--CCCH
T ss_pred CCEEEE---------CCCCCcHHHHHHHHHHhcC-ccCCCeEEEecCCCC--hhHHHHHhcCCccccccccccc--ccch
Confidence 567888 9999999999999987410 001223322222111 1111122222211111111100 1111
Q ss_pred eccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccC--------CCCCCeEEEEccCCC-------CCccHHH
Q psy11009 156 YEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT--------FPSTPVQYSIQKGIP-------WDIDEAL 220 (863)
Q Consensus 156 ~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~--------~~~~~VivIaATN~p-------~~LD~Al 220 (863)
++. ..+++|||||+|.+.. .+...|+..|+.-. ....++.||+|||.+ ..++++|
T Consensus 96 l~~--a~~~~l~lDEi~~l~~--------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L 165 (265)
T 2bjv_A 96 FER--ADGGTLFLDELATAPM--------MVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADL 165 (265)
T ss_dssp HHH--TTTSEEEEESGGGSCH--------HHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHH
T ss_pred hhh--cCCcEEEEechHhcCH--------HHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHH
Confidence 221 2357999999998853 34456666664210 112268899999985 2578999
Q ss_pred hhccceEEEecCCCHHH----HHHHHHHHhcc----CCCC--Cccc---HHHHhhhCCCCCHHHHHHHHHHHHHHH
Q psy11009 221 RRRLEKRIYIPLPSKAG----REALLKINLKE----VKVD--PAVD---LTHIASQLDGYSGADITNVCRDASMMS 283 (863)
Q Consensus 221 lRRFD~~I~i~lPd~~~----R~~IL~~~l~~----~~l~--~dvd---l~~LA~~TeG~SGADI~~lv~~Aal~a 283 (863)
+.||+. +.|.+|...+ ...+++.++.. .... ..++ ++.|....-.....+|++++..++..+
T Consensus 166 ~~Rl~~-~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 166 LDALAF-DVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHCS-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHH
T ss_pred HHhhcC-cEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhC
Confidence 999974 4555555544 44455555532 2221 1333 344444431224468999888876543
No 160
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.62 E-value=5.9e-09 Score=123.21 Aligned_cols=135 Identities=20% Similarity=0.214 Sum_probs=78.9
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhc-cCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEE----eccccccccc
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKG-IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV----CSSTLTSKYR 783 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~-~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~v----s~s~l~~~~~ 783 (863)
..|+|++.+++.+...+. -..+..... ..+...++||+||||||||++|+++|+.++..++.. ++..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~--~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALF--GGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTT--CCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHh--CCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 458999999888754332 111000011 012334899999999999999999999987665542 2223322211
Q ss_pred chh-H---HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCC-------CCCCCCceEE
Q psy11009 784 GES-E---KLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSS-------AEDSSKVVMV 852 (863)
Q Consensus 784 Ge~-e---~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~-------~~~~~~~VvV 852 (863)
... . ......+..| ..+||||||||.+.. .+++.|+..|+.-.- .......+.|
T Consensus 373 ~~~~~g~~~~~~G~l~~A---~~gil~IDEid~l~~------------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~v 437 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLA---DGGIAVIDEIDKMRD------------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAAV 437 (595)
T ss_dssp SGGGTSSCSEEECHHHHH---SSSEECCTTTTCCCS------------HHHHHHHHHHHSSSEEEESSSSEEEECCCCEE
T ss_pred eccccccccccCCeeEec---CCCcEEeehhhhCCH------------hHhhhhHHHHhCCEEEEecCCcEEEecCceEE
Confidence 100 0 0000122223 368999999998844 256778888863221 1111245789
Q ss_pred EEecCCCC
Q psy11009 853 LAATNFPW 860 (863)
Q Consensus 853 IaTTN~P~ 860 (863)
|||||.++
T Consensus 438 IaatNp~~ 445 (595)
T 3f9v_A 438 IAAGNPKF 445 (595)
T ss_dssp EEEECCTT
T ss_pred EEEcCCcC
Confidence 99999875
No 161
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.61 E-value=6.8e-08 Score=105.84 Aligned_cols=161 Identities=12% Similarity=0.033 Sum_probs=101.0
Q ss_pred CcCCCcccccccccccc-cchhcccchhhhccCcchhHHHHHHHh-------hhh------hHHHHHHHHhhcccceeee
Q psy11009 91 PVVGSGTYLKHKSPIKM-NFLSLVLPLLAEEHGKLKFKEAITLAL-------TVG------SSLNLYRSITNRGFYIEDY 156 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~-~~~~~~~~~l~~~~gk~s~~e~~~~~~-------~vg------~se~~~r~i~~~~~~l~~~ 156 (863)
|.||+|||.+|+..++. +.-.... ..--|.+. .|-...+. +-+ .....+|.+++...+..
T Consensus 31 G~~G~GKt~~a~~la~~l~~~~~~~---~~~c~~c~-~c~~~~~~~~~d~~~~~~~~~~~~~~i~~ir~l~~~~~~~~-- 104 (334)
T 1a5t_A 31 ALPGMGDDALIYALSRYLLCQQPQG---HKSCGHCR-GCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHA-- 104 (334)
T ss_dssp CCTTSCHHHHHHHHHHHHTCSSCBT---TBCCSCSH-HHHHHHHTCCTTEEEECCCTTCSSBCHHHHHHHHHHTTSCC--
T ss_pred CCCCchHHHHHHHHHHHHhCCCCCC---CCCCCCCH-HHHHHhcCCCCCEEEEeccccCCCCCHHHHHHHHHHHhhcc--
Confidence 99999999999999984 2111100 00011111 11111000 001 12345777776542221
Q ss_pred ccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHH
Q psy11009 157 EVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKA 236 (863)
Q Consensus 157 ~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~ 236 (863)
...++.|++|||+|.+-. ...|.||..|+ .+..++++|.+||.++.|+++++.|.. +++|++|+.+
T Consensus 105 --~~~~~kvviIdead~l~~--------~a~naLLk~lE---ep~~~~~~Il~t~~~~~l~~ti~SRc~-~~~~~~~~~~ 170 (334)
T 1a5t_A 105 --RLGGAKVVWVTDAALLTD--------AAANALLKTLE---EPPAETWFFLATREPERLLATLRSRCR-LHYLAPPPEQ 170 (334)
T ss_dssp --TTSSCEEEEESCGGGBCH--------HHHHHHHHHHT---SCCTTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHH
T ss_pred --ccCCcEEEEECchhhcCH--------HHHHHHHHHhc---CCCCCeEEEEEeCChHhCcHHHhhcce-eeeCCCCCHH
Confidence 235688999999998842 33577777765 344478999999999999999999996 6999999999
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHH
Q psy11009 237 GREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVC 276 (863)
Q Consensus 237 ~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv 276 (863)
+..++++... .++ +..+..++..+.| +...+.+++
T Consensus 171 ~~~~~L~~~~---~~~-~~~~~~l~~~s~G-~~r~a~~~l 205 (334)
T 1a5t_A 171 YAVTWLSREV---TMS-QDALLAALRLSAG-SPGAALALF 205 (334)
T ss_dssp HHHHHHHHHC---CCC-HHHHHHHHHHTTT-CHHHHHHTT
T ss_pred HHHHHHHHhc---CCC-HHHHHHHHHHcCC-CHHHHHHHh
Confidence 9999998775 222 3345667777755 333333333
No 162
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=98.60 E-value=9e-09 Score=111.66 Aligned_cols=183 Identities=12% Similarity=0.048 Sum_probs=97.5
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccccee
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIE 154 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~ 154 (863)
...+|++ |.||||||++|+++++.- -....|.++.+.+.+. +....+...|.....+.+... ...+
T Consensus 25 ~~~vLi~---------Ge~GtGKt~lAr~i~~~~-~~~~~~~v~v~~~~~~--~~l~~~~lfg~~~g~~tg~~~--~~~g 90 (304)
T 1ojl_A 25 DATVLIH---------GDSGTGKELVARALHACS-ARSDRPLVTLNCAALN--ESLLESELFGHEKGAFTGADK--RREG 90 (304)
T ss_dssp TSCEEEE---------SCTTSCHHHHHHHHHHHS-SCSSSCCCEEECSSCC--HHHHHHHHTCCCSSCCC---C--CCCC
T ss_pred CCcEEEE---------CCCCchHHHHHHHHHHhC-cccCCCeEEEeCCCCC--hHHHHHHhcCccccccCchhh--hhcC
Confidence 4567888 999999999999998731 0012333333322211 111111112211000000000 0111
Q ss_pred eeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccC--------CCCCCeEEEEccCCC-------CCccHH
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLT--------FPSTPVQYSIQKGIP-------WDIDEA 219 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~--------~~~~~VivIaATN~p-------~~LD~A 219 (863)
.|+.+ ..++|||||+|.+.. .+...|+..|+... ....++.||+|||++ ..++++
T Consensus 91 ~~~~a--~~g~L~LDEi~~l~~--------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~ 160 (304)
T 1ojl_A 91 RFVEA--DGGTLFLDEIGDISP--------LMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQD 160 (304)
T ss_dssp HHHHH--TTSEEEEESCTTCCH--------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHH
T ss_pred HHHhc--CCCEEEEeccccCCH--------HHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHH
Confidence 12222 346999999999854 34556776664321 112368999999986 246788
Q ss_pred HhhccceEEEecCCCHHHH----HHHHHHHhccC----CCC-Cccc---HHHHhhhCCCCCHHHHHHHHHHHHHH
Q psy11009 220 LRRRLEKRIYIPLPSKAGR----EALLKINLKEV----KVD-PAVD---LTHIASQLDGYSGADITNVCRDASMM 282 (863)
Q Consensus 220 llRRFD~~I~i~lPd~~~R----~~IL~~~l~~~----~l~-~dvd---l~~LA~~TeG~SGADI~~lv~~Aal~ 282 (863)
|+.||+ .+.|.+|...+| ..|++.++... ... ..++ ++.|....-.-...+|++++..|+..
T Consensus 161 L~~Rl~-~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~~~~~~ 234 (304)
T 1ojl_A 161 LYYRLN-VVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVL 234 (304)
T ss_dssp HHHHHS-SEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHHHHHHH
T ss_pred HHhhcC-eeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 888997 556666665544 44666666432 111 1233 45566555122456888888777543
No 163
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.59 E-value=1.1e-08 Score=121.07 Aligned_cols=145 Identities=16% Similarity=0.205 Sum_probs=91.2
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhh-cc-----------------CCCCCCeEEEEccCCC--CCccHHHh
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR-LL-----------------TFPSTPVQYSIQKGIP--WDIDEALR 221 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld-~~-----------------~~~~~~VivIaATN~p--~~LD~All 221 (863)
.+.+|||||+|.+- ..+.+.|+..|+ +. .....++.||+|||+. +.+|++|+
T Consensus 201 ~~gvL~LDEi~~l~--------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~~l~~~l~ 272 (604)
T 3k1j_A 201 HKGVLFIDEIATLS--------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVDKMHPALR 272 (604)
T ss_dssp TTSEEEETTGGGSC--------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHHHSCHHHH
T ss_pred CCCEEEEechhhCC--------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHHhhcCHHHH
Confidence 56799999999873 234555666553 11 0112368899999987 78999999
Q ss_pred hccc---eEEEecC--CC-HHHHHHHHHHHhccCC---CCCcc---cHHHHhhhC---CCC------CHHHHHHHHHHHH
Q psy11009 222 RRLE---KRIYIPL--PS-KAGREALLKINLKEVK---VDPAV---DLTHIASQL---DGY------SGADITNVCRDAS 280 (863)
Q Consensus 222 RRFD---~~I~i~l--Pd-~~~R~~IL~~~l~~~~---l~~dv---dl~~LA~~T---eG~------SGADI~~lv~~Aa 280 (863)
+||+ ..++++. |+ ......+++.+..... ....+ .+..|+... .|. +..+|.++++.|.
T Consensus 273 ~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~ 352 (604)
T 3k1j_A 273 SRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAG 352 (604)
T ss_dssp HHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHH
T ss_pred HHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHH
Confidence 9998 4565532 22 4555566554442211 11122 244444432 553 7899999999987
Q ss_pred HHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCCCchhhhhhc
Q psy11009 281 MMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLENI 332 (863)
Q Consensus 281 l~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~psvs~~~l~~~ 332 (863)
..|..+. ...|+.+|+..|+... ..+.++.++.|
T Consensus 353 ~~A~~~~-----------------~~~I~~edv~~A~~~~-~~i~~~~~e~~ 386 (604)
T 3k1j_A 353 DIAVKKG-----------------KKYVEREDVIEAVKMA-KPLEKQLADWY 386 (604)
T ss_dssp HHHHHTT-----------------CSSBCHHHHHHHHHHT-CCHHHHHHHHH
T ss_pred HHHHhcC-----------------cccccHHHHHHHHHhh-hhhHHHHHHHH
Confidence 7765544 4579999999999652 33444444444
No 164
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.58 E-value=4.1e-08 Score=106.72 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=59.0
Q ss_pred CCCccccccchH----HHHHHHHHHhhcCCCChhhhhccC-CCCceEEEECCCCCChHHHHHHHHHHhC----CcEEEEe
Q psy11009 704 PNIRWDDIAELT----DAKRLLEEAVVLPMWMPEFFKGIR-RPWKGVLMVGPPGTGKTMLAKAVATECG----TTFFNVC 774 (863)
Q Consensus 704 p~~~~~dLiGl~----~vk~~L~e~V~~pl~~pe~~~~~~-~p~kgvLL~GPPGtGKT~LAraIA~el~----~~~i~vs 774 (863)
.+.+|+++.+.. .+...+..++. ... .+.++++|+||||||||+||+++|.++. .+++.++
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~----------~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVE----------QYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHH----------HCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHH----------hccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 346788887533 23333444332 111 1247999999999999999999998764 7888888
Q ss_pred cccccccccchh-HHHHHHHHHHHHhCCCeEEEEcCCCccc
Q psy11009 775 SSTLTSKYRGES-EKLVRLLFEMARFYAPSTIFIDEIDSLC 814 (863)
Q Consensus 775 ~s~l~~~~~Ge~-e~~ir~lf~~A~~~~p~ILfIDEID~l~ 814 (863)
++++...+.... .......+... ..+.+|||||++...
T Consensus 189 ~~~l~~~l~~~~~~~~~~~~~~~~--~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 189 FPSFAIDVKNAISNGSVKEEIDAV--KNVPVLILDDIGAEQ 227 (308)
T ss_dssp HHHHHHHHHCCCC----CCTTHHH--HTSSEEEEETCCC--
T ss_pred HHHHHHHHHHHhccchHHHHHHHh--cCCCEEEEcCCCCCC
Confidence 877654332210 11111112221 235799999997653
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.56 E-value=4.4e-08 Score=107.12 Aligned_cols=157 Identities=10% Similarity=0.040 Sum_probs=93.4
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEec
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKM 170 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDE 170 (863)
|.||||||++|+.+++. +..+.....+-.+. . +-..| ...+|..+..... ....-..++.|++|||
T Consensus 53 Gp~G~GKTtla~~la~~----l~~~~~~~~~~~~~--~----~~~~~--~~~ir~~i~~~~~--~~~~~~~~~~viiiDe 118 (340)
T 1sxj_C 53 GPPGTGKTSTIVALARE----IYGKNYSNMVLELN--A----SDDRG--IDVVRNQIKDFAS--TRQIFSKGFKLIILDE 118 (340)
T ss_dssp CSSSSSHHHHHHHHHHH----HHTTSHHHHEEEEC--T----TSCCS--HHHHHTHHHHHHH--BCCSSSCSCEEEEETT
T ss_pred CCCCCCHHHHHHHHHHH----HcCCCccceEEEEc--C----ccccc--HHHHHHHHHHHHh--hcccCCCCceEEEEeC
Confidence 99999999999999996 11111000000000 0 00011 1233443332110 0000123588999999
Q ss_pred ccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHhccCC
Q psy11009 171 FSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVK 250 (863)
Q Consensus 171 iDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l~~~~ 250 (863)
+|.+.. ...+.|+..|+... ..+.+|.+||.++.+++++..|+. .+.++.++.++..+++...+....
T Consensus 119 ~~~l~~--------~~~~~L~~~le~~~---~~~~~il~~n~~~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~ 186 (340)
T 1sxj_C 119 ADAMTN--------AAQNALRRVIERYT---KNTRFCVLANYAHKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEK 186 (340)
T ss_dssp GGGSCH--------HHHHHHHHHHHHTT---TTEEEEEEESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTT
T ss_pred CCCCCH--------HHHHHHHHHHhcCC---CCeEEEEEecCccccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcC
Confidence 998843 23466666665433 256788889999999999999997 789999999999999988884332
Q ss_pred CC-CcccHHHHhhhCCCCCHHHHHHHHH
Q psy11009 251 VD-PAVDLTHIASQLDGYSGADITNVCR 277 (863)
Q Consensus 251 l~-~dvdl~~LA~~TeG~SGADI~~lv~ 277 (863)
+. .+..+..++..+ |+++..+++
T Consensus 187 ~~i~~~~~~~i~~~s----~G~~r~~~~ 210 (340)
T 1sxj_C 187 LKLSPNAEKALIELS----NGDMRRVLN 210 (340)
T ss_dssp CCBCHHHHHHHHHHH----TTCHHHHHH
T ss_pred CCCCHHHHHHHHHHc----CCCHHHHHH
Confidence 22 123355566655 445554443
No 166
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.56 E-value=9.8e-08 Score=92.89 Aligned_cols=60 Identities=15% Similarity=0.269 Sum_probs=47.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~ 815 (863)
+...++|+||+|+|||+|+++++..+ |..+++++..++... +....+.+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~~~~~~lLilDE~~~~~~ 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DAAFEAEYLAVDQVEKLGN 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GGGGGCSEEEEESTTCCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HHHhCCCEEEEeCccccCh
Confidence 34689999999999999999999988 777888888776543 1123588999999987643
No 167
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.49 E-value=9.4e-08 Score=113.08 Aligned_cols=53 Identities=30% Similarity=0.429 Sum_probs=46.5
Q ss_pred hcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 701 QKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 701 ~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
.++++..|++++|++.+++.+...+. ...+++|+||||||||++|+++|..+.
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~--------------~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAAN--------------QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHH--------------TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred ccccccccceEECchhhHhhcccccc--------------CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 57889999999999999999888773 224899999999999999999999874
No 168
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.41 E-value=1.2e-06 Score=96.90 Aligned_cols=138 Identities=16% Similarity=0.125 Sum_probs=82.1
Q ss_pred ccccchHHHHHHHHHHh-hcCCCChhhhhccCCCCceEEE--ECCCCCChHHHHHHHHHHh---------CCcEEEEecc
Q psy11009 709 DDIAELTDAKRLLEEAV-VLPMWMPEFFKGIRRPWKGVLM--VGPPGTGKTMLAKAVATEC---------GTTFFNVCSS 776 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V-~~pl~~pe~~~~~~~p~kgvLL--~GPPGtGKT~LAraIA~el---------~~~~i~vs~s 776 (863)
++++|.+...+.|.+.+ .. ...+....+..++| +||||||||++++.+++.+ +..++.+++.
T Consensus 22 ~~l~gR~~el~~l~~~l~~~------~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNR------LLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAF 95 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHH------HHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGG
T ss_pred CCCCChHHHHHHHHHHHhHH------HhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECC
Confidence 67999999888888765 31 11111123468999 9999999999999999886 5677888864
Q ss_pred ccccc------c----------cch-hHHHHHHHHHHHH-hCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHh
Q psy11009 777 TLTSK------Y----------RGE-SEKLVRLLFEMAR-FYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMD 838 (863)
Q Consensus 777 ~l~~~------~----------~Ge-~e~~ir~lf~~A~-~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD 838 (863)
..... . .+. .......+..... ...|.+|||||++.+...+.. ...++..|+..++
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~------~~~~l~~l~~~~~ 169 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI------AAEDLYTLLRVHE 169 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS------CHHHHHHHHTHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc------chHHHHHHHHHHH
Confidence 32110 0 011 1122222222222 245889999999998653211 1234555555555
Q ss_pred cCCCCCCCCCceEEEEecCCC
Q psy11009 839 GLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 839 ~l~~~~~~~~~VvVIaTTN~P 859 (863)
.+.... ....+.||++||.+
T Consensus 170 ~~~~~~-~~~~v~lI~~~~~~ 189 (412)
T 1w5s_A 170 EIPSRD-GVNRIGFLLVASDV 189 (412)
T ss_dssp HSCCTT-SCCBEEEEEEEEET
T ss_pred hcccCC-CCceEEEEEEeccc
Confidence 432100 01458888888755
No 169
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.39 E-value=3e-07 Score=102.97 Aligned_cols=127 Identities=23% Similarity=0.296 Sum_probs=84.3
Q ss_pred cccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccccc-
Q psy11009 708 WDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKYR- 783 (863)
Q Consensus 708 ~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~~- 783 (863)
+..++|.....+.+.+.+. .......++||+|++||||+++|+++.... +.+|+.++|+.+.....
T Consensus 136 ~~~~ig~s~~m~~l~~~i~----------~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIK----------KISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHH----------HHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHH----------HhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 4568888877777777663 122334579999999999999999998876 47999999987643211
Q ss_pred ----chhH-------HHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc-----CCCCCCCC
Q psy11009 784 ----GESE-------KLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG-----LSSAEDSS 847 (863)
Q Consensus 784 ----Ge~e-------~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~-----l~~~~~~~ 847 (863)
|... ......|+.|. .++||||||+.+.. .++..||..|+. ++......
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~------------~~q~~Ll~~l~~~~~~~~g~~~~~~ 270 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELAD---GGTLFLDEIGELSL------------EAQAKLLRVIESGKFYRLGGRKEIE 270 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTT---TSEEEEESGGGCCH------------HHHHHHHHHHHHSEECCBTCCSBEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCC---CcEEEEcChhhCCH------------HHHHHHHHHHhcCcEEeCCCCceee
Confidence 1000 00112344443 68999999998843 467778877763 22222223
Q ss_pred CceEEEEecCCC
Q psy11009 848 KVVMVLAATNFP 859 (863)
Q Consensus 848 ~~VvVIaTTN~P 859 (863)
..|.||+|||++
T Consensus 271 ~~~rii~at~~~ 282 (387)
T 1ny5_A 271 VNVRILAATNRN 282 (387)
T ss_dssp CCCEEEEEESSC
T ss_pred ccEEEEEeCCCC
Confidence 457899999974
No 170
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.36 E-value=3.2e-07 Score=88.04 Aligned_cols=109 Identities=10% Similarity=-0.040 Sum_probs=68.0
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhccccee
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIE 154 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~ 154 (863)
...+|+| |.||||||++|+++++. .. |.++.+.+.+ .+. ..+.+|..+
T Consensus 27 ~~~vll~---------G~~GtGKt~lA~~i~~~----~~-~~~~~~~~~~-------~~~-------~~~~~~~~a---- 74 (143)
T 3co5_A 27 TSPVFLT---------GEAGSPFETVARYFHKN----GT-PWVSPARVEY-------LID-------MPMELLQKA---- 74 (143)
T ss_dssp SSCEEEE---------EETTCCHHHHHGGGCCT----TS-CEECCSSTTH-------HHH-------CHHHHHHHT----
T ss_pred CCcEEEE---------CCCCccHHHHHHHHHHh----CC-CeEEechhhC-------ChH-------hhhhHHHhC----
Confidence 3468888 99999999999999986 11 4333222211 111 145556432
Q ss_pred eeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCC-CC----ccHHHhhccce-EE
Q psy11009 155 DYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIP-WD----IDEALRRRLEK-RI 228 (863)
Q Consensus 155 ~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p-~~----LD~AllRRFD~-~I 228 (863)
.+++|||||+|.+... ....|+..|+... ..++.+|+|||++ +. +++.+..||.. .|
T Consensus 75 -------~~~~l~lDei~~l~~~--------~q~~Ll~~l~~~~--~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i 137 (143)
T 3co5_A 75 -------EGGVLYVGDIAQYSRN--------IQTGITFIIGKAE--RCRVRVIASCSYAAGSDGISCEEKLAGLFSESVV 137 (143)
T ss_dssp -------TTSEEEEEECTTCCHH--------HHHHHHHHHHHHT--TTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEE
T ss_pred -------CCCeEEEeChHHCCHH--------HHHHHHHHHHhCC--CCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEE
Confidence 2469999999998542 3445565554332 2268899999975 33 55666668544 56
Q ss_pred EecC
Q psy11009 229 YIPL 232 (863)
Q Consensus 229 ~i~l 232 (863)
++|+
T Consensus 138 ~lPp 141 (143)
T 3co5_A 138 RIPP 141 (143)
T ss_dssp EECC
T ss_pred eCCC
Confidence 6653
No 171
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.33 E-value=5.8e-07 Score=117.30 Aligned_cols=114 Identities=20% Similarity=0.250 Sum_probs=79.8
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccc----cc------------cchhHHHHHHHHHHHHhC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTS----KY------------RGESEKLVRLLFEMARFY 800 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~----~~------------~Ge~e~~ir~lf~~A~~~ 800 (863)
.+.++++|+||||||||+||.+++.++ |....+++...... .. +...+..++.++..++..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~ 1504 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1504 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcC
Confidence 566799999999999999999998776 56677777654321 11 123456777888888889
Q ss_pred CCeEEEEcCCCcccccC---CCCchhhH--HHHHHHHHHHHHhcCCCCCCCCCceEEEEecCC
Q psy11009 801 APSTIFIDEIDSLCSRR---GSESEHEA--SRRVKSELLVQMDGLSSAEDSSKVVMVLAATNF 858 (863)
Q Consensus 801 ~p~ILfIDEID~l~~~R---~~~~~~e~--~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~ 858 (863)
+|++|||||++.+.+.+ +..+++.+ ..|+++++|.+|+++..... ++ +.+||.
T Consensus 1505 ~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~----v~-VI~tNq 1562 (2050)
T 3cmu_A 1505 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN----TL-LIFINQ 1562 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT----CE-EEEEEC
T ss_pred CCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC----cE-EEEEcc
Confidence 99999999999998742 22222222 46788999999987755432 43 345554
No 172
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.24 E-value=2.8e-07 Score=88.61 Aligned_cols=104 Identities=10% Similarity=-0.030 Sum_probs=65.3
Q ss_pred cceeEeeecccccccCcCCCcccccccccccc------cchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhc
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM------NFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNR 149 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~ 149 (863)
.-+|+| |.||||||++|+++++. .|+ +....+... ......|..
T Consensus 25 ~~vll~---------G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~--------------------~~~~~~~~~ 74 (145)
T 3n70_A 25 IAVWLY---------GAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA--------------------PQLNDFIAL 74 (145)
T ss_dssp SCEEEE---------SSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--------------------SCHHHHHHH
T ss_pred CCEEEE---------CCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--------------------hhhhcHHHH
Confidence 347888 99999999999999874 244 333333111 223344432
Q ss_pred ccceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC-------CccHHHhh
Q psy11009 150 GFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW-------DIDEALRR 222 (863)
Q Consensus 150 ~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~-------~LD~AllR 222 (863)
+ ..++|||||+|.+.. .....|+..|.... .++.+|+|||++- .+++.+..
T Consensus 75 a-----------~~g~l~ldei~~l~~--------~~q~~Ll~~l~~~~---~~~~~I~~t~~~~~~~~~~~~~~~~L~~ 132 (145)
T 3n70_A 75 A-----------QGGTLVLSHPEHLTR--------EQQYHLVQLQSQEH---RPFRLIGIGDTSLVELAASNHIIAELYY 132 (145)
T ss_dssp H-----------TTSCEEEECGGGSCH--------HHHHHHHHHHHSSS---CSSCEEEEESSCHHHHHHHSCCCHHHHH
T ss_pred c-----------CCcEEEEcChHHCCH--------HHHHHHHHHHhhcC---CCEEEEEECCcCHHHHHHcCCCCHHHHH
Confidence 1 346999999998853 33456666663322 2678999999852 46667776
Q ss_pred ccce-EEEec
Q psy11009 223 RLEK-RIYIP 231 (863)
Q Consensus 223 RFD~-~I~i~ 231 (863)
||.. .|++|
T Consensus 133 rl~~~~i~lP 142 (145)
T 3n70_A 133 CFAMTQIACL 142 (145)
T ss_dssp HHHHHEEECC
T ss_pred HhcCCEEeCC
Confidence 7653 24443
No 173
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.14 E-value=5.3e-06 Score=111.57 Aligned_cols=131 Identities=11% Similarity=0.040 Sum_probs=79.7
Q ss_pred cceeecceeEeeecccccccCcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcc
Q psy11009 71 PKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRG 150 (863)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~ 150 (863)
=+....|.+++ |++|||||.++|..|++ +..|.++..-.- +.....+..+|..
T Consensus 641 Al~~~~~~~l~---------GpaGtGKTe~vk~LA~~----lg~~~v~~nc~e-------------~ld~~~lg~~~~g- 693 (2695)
T 4akg_A 641 SLHQKYGGCFF---------GPAGTGKTETVKAFGQN----LGRVVVVFNCDD-------------SFDYQVLSRLLVG- 693 (2695)
T ss_dssp HHHTTCEEEEE---------CCTTSCHHHHHHHHHHT----TTCCCEEEETTS-------------SCCHHHHHHHHHH-
T ss_pred HHHhCCCCccc---------CCCCCCcHHHHHHHHHH----hCCcEEEEECCC-------------CCChhHhhHHHHH-
Confidence 34456678887 99999999999999996 555544322110 1111122334422
Q ss_pred cceeeeccCCCCcEEEEEecccccccccccchhHhHHHHHH----HHh-hc---cC------CCCCCeEEEEccC----C
Q psy11009 151 FYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCI----HKY-RL---LT------FPSTPVQYSIQKG----I 212 (863)
Q Consensus 151 ~~l~~~~~~~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL----~~l-d~---~~------~~~~~VivIaATN----~ 212 (863)
.....++++||||+.+-.. .-.++++.+ ..+ ++ +. .......|++|.| .
T Consensus 694 --------~~~~Gaw~~~DE~nr~~~e-----vLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g 760 (2695)
T 4akg_A 694 --------ITQIGAWGCFDEFNRLDEK-----VLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNG 760 (2695)
T ss_dssp --------HHHHTCEEEEETTTSSCHH-----HHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSS
T ss_pred --------HHhcCCEeeehhhhhcChH-----HHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccC
Confidence 1122379999999976431 122222222 222 11 00 0122566788888 4
Q ss_pred CCCccHHHhhccceEEEecCCCHHHHHHHH
Q psy11009 213 PWDIDEALRRRLEKRIYIPLPSKAGREALL 242 (863)
Q Consensus 213 p~~LD~AllRRFD~~I~i~lPd~~~R~~IL 242 (863)
-..|.+++.+|| +.|++..||.+...+|+
T Consensus 761 ~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~ 789 (2695)
T 4akg_A 761 RSELPENLKKSF-REFSMKSPQSGTIAEMI 789 (2695)
T ss_dssp SCCCCHHHHTTE-EEEECCCCCHHHHHHHH
T ss_pred cccccHHHHhhe-EEEEeeCCCHHHHHHHH
Confidence 567999999999 78999999999888875
No 174
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.14 E-value=4.2e-06 Score=93.14 Aligned_cols=126 Identities=22% Similarity=0.339 Sum_probs=81.6
Q ss_pred ccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCC--cEEEEeccccccccc---
Q psy11009 709 DDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGT--TFFNVCSSTLTSKYR--- 783 (863)
Q Consensus 709 ~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~--~~i~vs~s~l~~~~~--- 783 (863)
.+++|.......+.+.+. ........+|++|++||||+.+|+++....+. .|+.++|..+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~----------~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIP----------KIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHH----------HHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhh----------hhhccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 568888888777776552 11122346999999999999999999988753 399999987643211
Q ss_pred --chh-------HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhc-----CCCCCCCCCc
Q psy11009 784 --GES-------EKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG-----LSSAEDSSKV 849 (863)
Q Consensus 784 --Ge~-------e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~-----l~~~~~~~~~ 849 (863)
|.. .......|+.|. .++||||||+.+.. .++..||..|+. ++......-.
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~---~gtlfldei~~l~~------------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 263 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELAD---QGTLFLDEVGELDQ------------RVQAKLLRVLETGSFTRLGGNQKIEVD 263 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTT---TSEEEEETGGGSCH------------HHHHHHHHHHHHSEECCBTCCCBEECC
T ss_pred hcCccccccCCcccccCChHhhcC---CCeEEecChhhCCH------------HHHHHHHHHHHhCCcccCCCCcceeee
Confidence 000 000112344443 67999999998843 467788888863 2221112234
Q ss_pred eEEEEecCCC
Q psy11009 850 VMVLAATNFP 859 (863)
Q Consensus 850 VvVIaTTN~P 859 (863)
+.+|+|||+.
T Consensus 264 ~rii~at~~~ 273 (368)
T 3dzd_A 264 IRVISATNKN 273 (368)
T ss_dssp CEEEEEESSC
T ss_pred eEEEEecCCC
Confidence 7799999964
No 175
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.09 E-value=3.1e-06 Score=94.61 Aligned_cols=100 Identities=22% Similarity=0.193 Sum_probs=62.5
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcccc-cCC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS-RRG 818 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l~~-~R~ 818 (863)
.++..++|+||||+|||+++++++...+..++.+..+.-. . -|.........++|+||++.+.. .|+
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~------~------~~~lg~~~q~~~~l~dd~~~~~~~~r~ 234 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDR------L------NFELGVAIDQFLVVFEDVKGTGGESRD 234 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTT------H------HHHHGGGTTCSCEEETTCCCSTTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchh------H------HHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 4556899999999999999999999988776654332210 0 11122223456789999999875 332
Q ss_pred CCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCC
Q psy11009 819 SESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862 (863)
Q Consensus 819 ~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~I 862 (863)
-....... ....+...+|+. +.|+++||+|+.+
T Consensus 235 l~~~~~~~--~~~~l~~~ldG~---------v~v~~~tn~~~~l 267 (377)
T 1svm_A 235 LPSGQGIN--NLDNLRDYLDGS---------VKVNLEKKHLNKR 267 (377)
T ss_dssp CCCCSHHH--HHHTTHHHHHCS---------SCEEECCSSSCCE
T ss_pred ccccCcch--HHHHHHHHhcCC---------CeEeeccCchhhH
Confidence 11111111 224455556553 4577889998865
No 176
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.03 E-value=5.5e-06 Score=89.95 Aligned_cols=126 Identities=7% Similarity=-0.067 Sum_probs=85.2
Q ss_pred CcCCCcccccccccccccchhc--ccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEE
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSL--VLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVA 168 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~--~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFi 168 (863)
|.||+|||.+|..+++- +..+ .-|.+..--+. ... -....+|.+++.+.+.. ...+..|+||
T Consensus 25 Gp~G~GKtt~a~~la~~-~~~~~~~~~d~~~l~~~---------~~~--~~id~ir~li~~~~~~p----~~~~~kvviI 88 (305)
T 2gno_A 25 GEDLSYPREVSLELPEY-VEKFPPKASDVLEIDPE---------GEN--IGIDDIRTIKDFLNYSP----ELYTRKYVIV 88 (305)
T ss_dssp CSSSSHHHHHHHHHHHH-HHTSCCCTTTEEEECCS---------SSC--BCHHHHHHHHHHHTSCC----SSSSSEEEEE
T ss_pred CCCCCCHHHHHHHHHHh-CchhhccCCCEEEEcCC---------cCC--CCHHHHHHHHHHHhhcc----ccCCceEEEe
Confidence 99999999999999873 1111 01221100000 000 12334677877542222 1234679999
Q ss_pred ecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHHHHHHHHHHh
Q psy11009 169 KMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAGREALLKINL 246 (863)
Q Consensus 169 DEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~R~~IL~~~l 246 (863)
||+|.+- ....|.||.-|.. +..++++|.+||.|+.|-|++..| .++|++|+.++...+++..+
T Consensus 89 dead~lt--------~~a~naLLk~LEe---p~~~t~fIl~t~~~~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 89 HDCERMT--------QQAANAFLKALEE---PPEYAVIVLNTRRWHYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp TTGGGBC--------HHHHHHTHHHHHS---CCTTEEEEEEESCGGGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred ccHHHhC--------HHHHHHHHHHHhC---CCCCeEEEEEECChHhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 9999884 2336778877753 333688888899999999999999 99999999999999998877
No 177
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.97 E-value=4.2e-06 Score=85.98 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=26.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
.+++||+||||||||++|.++|+.+...++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~ 88 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVIS 88 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 3589999999999999999999999765543
No 178
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.94 E-value=7.3e-05 Score=80.32 Aligned_cols=57 Identities=26% Similarity=0.305 Sum_probs=45.5
Q ss_pred CCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 704 p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
|+..-..++|.+...+.|.+++. . + +.++++||+|+|||+|++.+++..+ ++.+++.
T Consensus 7 ~~~~~~~~~gR~~el~~L~~~l~----------~-~---~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~ 63 (350)
T 2qen_A 7 PKTRREDIFDREEESRKLEESLE----------N-Y---PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCR 63 (350)
T ss_dssp CCCSGGGSCSCHHHHHHHHHHHH----------H-C---SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHH
T ss_pred CCCChHhcCChHHHHHHHHHHHh----------c-C---CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEee
Confidence 44556779999999999988763 1 1 5899999999999999999999986 5566554
No 179
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.91 E-value=8.1e-06 Score=83.37 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=60.6
Q ss_pred eEEEECCCCCChHHHHHHHHHH--------hC-CcEEEEeccccccccc----------chhHH--HHHHHHHHH--HhC
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATE--------CG-TTFFNVCSSTLTSKYR----------GESEK--LVRLLFEMA--RFY 800 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~e--------l~-~~~i~vs~s~l~~~~~----------Ge~e~--~ir~lf~~A--~~~ 800 (863)
-.|++|+||+|||++|..++.. .| .+++..+..++.-.+. ..... ....+++.+ ...
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 5789999999999999887544 24 6666666555432221 00000 012233321 224
Q ss_pred CCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCCCCCC
Q psy11009 801 APSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEGA 863 (863)
Q Consensus 801 ~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P~~ID 863 (863)
.++||+|||++.+.+.+.... +.. .++..+..- +...+-||.+|+.|..||
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~--e~~-----rll~~l~~~-----r~~~~~iil~tq~~~~l~ 137 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGS--KIP-----ENVQWLNTH-----RHQGIDIFVLTQGPKLLD 137 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTC--CCC-----HHHHGGGGT-----TTTTCEEEEEESCGGGBC
T ss_pred CceEEEEEChhhhccCccccc--hhH-----HHHHHHHhc-----CcCCeEEEEECCCHHHHh
Confidence 588999999999987653221 111 244444321 122345677777777665
No 180
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.82 E-value=2.2e-05 Score=89.71 Aligned_cols=133 Identities=11% Similarity=0.042 Sum_probs=82.7
Q ss_pred EEEEecccccccccccchhHhHHHHHHHHhh-------ccCCCCCCeEEEEccCCCC-----------CccHHHhhccce
Q psy11009 165 LAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR-------LLTFPSTPVQYSIQKGIPW-----------DIDEALRRRLEK 226 (863)
Q Consensus 165 IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld-------~~~~~~~~VivIaATN~p~-----------~LD~AllRRFD~ 226 (863)
|+|+|||+.+- ..+...|+.-|. |. ....++.||||+|..+ .|.++++-|||.
T Consensus 303 vl~lDEIn~~~--------~~~qsaLlEaMEe~~VtI~G~-~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDL 373 (506)
T 3f8t_A 303 ILAVDHLEGAP--------EPHRWALMEAMDKGTVTVDGI-ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDL 373 (506)
T ss_dssp EEEEECCTTCC--------HHHHHHHHHHHHHSEEEETTE-EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSE
T ss_pred eeehHhhhhCC--------HHHHHHHHHHHhCCcEEECCE-EcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheee
Confidence 99999999763 345566776663 22 2233789999999876 788999999998
Q ss_pred EEEe-cCCCHHHH---------HHHHHHHh---ccCCCCCccc---HHHHh-----------------hhCCCCCHHHHH
Q psy11009 227 RIYI-PLPSKAGR---------EALLKINL---KEVKVDPAVD---LTHIA-----------------SQLDGYSGADIT 273 (863)
Q Consensus 227 ~I~i-~lPd~~~R---------~~IL~~~l---~~~~l~~dvd---l~~LA-----------------~~TeG~SGADI~ 273 (863)
.+.+ +.||.+.- .+.++.|. +...+.+.++ .+.|+ ...-|.|...++
T Consensus 374 i~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~le 453 (506)
T 3f8t_A 374 IAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLE 453 (506)
T ss_dssp EEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHH
T ss_pred EEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHH
Confidence 7654 56765432 12334333 2011111111 11111 034588999999
Q ss_pred HHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhcCC
Q psy11009 274 NVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKS 323 (863)
Q Consensus 274 ~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ps 323 (863)
.+++-|...|.-+. +..|+.+|+..|+.=+..+
T Consensus 454 aLiRlA~A~A~L~g-----------------R~~V~~eDV~~Ai~L~~~S 486 (506)
T 3f8t_A 454 SVERLAKAHARMRL-----------------SDDVEPEDVDIAAELVDWY 486 (506)
T ss_dssp HHHHHHHHHHHHTT-----------------CSEECHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-----------------cCCCCHHHHHHHHHHHHHH
Confidence 99988877776665 5689999999998866544
No 181
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.80 E-value=0.0002 Score=76.98 Aligned_cols=58 Identities=17% Similarity=0.161 Sum_probs=47.0
Q ss_pred CCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc
Q psy11009 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777 (863)
Q Consensus 704 p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~ 777 (863)
+......++|.+...+.|.+ +.. +.++++||+|+|||+|++.+++.++..++.+++..
T Consensus 8 ~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 8 PKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp CCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 44455779999988888877 621 48999999999999999999999877777787654
No 182
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.75 E-value=3.2e-05 Score=82.47 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=24.8
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCC
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGT 768 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~ 768 (863)
+.++++|+||||||||++|.+||+.++.
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 3468999999999999999999998654
No 183
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.64 E-value=0.00031 Score=70.14 Aligned_cols=28 Identities=32% Similarity=0.636 Sum_probs=24.3
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFF 771 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i 771 (863)
.+.|.||+|+|||+|+++++..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 5789999999999999999999865443
No 184
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.59 E-value=1.3e-05 Score=87.65 Aligned_cols=132 Identities=8% Similarity=-0.121 Sum_probs=74.2
Q ss_pred chhhccccCCccccc-c-cceeecceeEeeecccccccCcCCCcccccccccccc-----cchhcccchhhhccCcchhH
Q psy11009 55 NILTFLTSKYPSVFL-L-PKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM-----NFLSLVLPLLAEEHGKLKFK 127 (863)
Q Consensus 55 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~l~~~~gk~s~~ 127 (863)
.+-.+++.-.|.|-. | -+.-...+|+| |.||||||++|..++.. -|++..+.+.
T Consensus 101 ~i~~~i~TGi~~LD~lLGGi~~gsviLI~---------GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~---------- 161 (331)
T 2vhj_A 101 DLTGELVGCSPVVAEFGGHRYASGMVIVT---------GKGNSGKTPLVHALGEALGGKDKYATVRFGEP---------- 161 (331)
T ss_dssp CSSTTCCSBCCEEEEETTEEEESEEEEEE---------CSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCS----------
T ss_pred chhhccccCcHHHHHHhCCCCCCcEEEEE---------cCCCCCHHHHHHHHHHhCCCCEEEEEecchhh----------
Confidence 344555555665443 3 11122335777 99999999999988752 2444422222
Q ss_pred HHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEeccccccccccc----chhHhHHHHHHHHhhccCCCCCC
Q psy11009 128 EAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL----RGSKTFRTLCIHKYRLLTFPSTP 203 (863)
Q Consensus 128 e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDEiDal~~~R~~----~~~~~v~n~lL~~ld~~~~~~~~ 203 (863)
++.+-...+..++.+++.. .. .+ +|||||++++...+.. +...+..+++|..|+++.... +
T Consensus 162 ----v~~~~~~le~~l~~i~~~l--------~~-~~-LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~-g 226 (331)
T 2vhj_A 162 ----LSGYNTDFNVFVDDIARAM--------LQ-HR-VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASR-G 226 (331)
T ss_dssp ----STTCBCCHHHHHHHHHHHH--------HH-CS-EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHH-T
T ss_pred ----hhhhhcCHHHHHHHHHHHH--------hh-CC-EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhC-C
Confidence 1111133344444444321 11 22 9999999999765422 223466677888876654433 6
Q ss_pred eEEEEccCCCCCccHHHh
Q psy11009 204 VQYSIQKGIPWDIDEALR 221 (863)
Q Consensus 204 VivIaATN~p~~LD~All 221 (863)
+.+|++|| |..+|+++.
T Consensus 227 vtVIlttn-p~s~deal~ 243 (331)
T 2vhj_A 227 CVVIASLN-PTSNDDKIV 243 (331)
T ss_dssp CEEEEECC-CSSCSSSHH
T ss_pred CEEEEEeC-CcccchhHH
Confidence 78888888 778887753
No 185
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.57 E-value=0.0001 Score=84.12 Aligned_cols=70 Identities=21% Similarity=0.357 Sum_probs=41.2
Q ss_pred HHHhhhhhcCCCCcccccc-chHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CC-
Q psy11009 694 MLERDMVQKNPNIRWDDIA-ELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GT- 768 (863)
Q Consensus 694 ~~~~~~~~k~p~~~~~dLi-Gl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~- 768 (863)
..++.|+.+|++.+|++|- ++..+...+...+. . ....++|.||||||||+++.+++..+ +.
T Consensus 9 ~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~----------~---~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~ 75 (459)
T 3upu_A 9 HHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIK----------E---KKHHVTINGPAGTGATTLTKFIIEALISTGET 75 (459)
T ss_dssp ------------CCSSCCCHHHHHHHHHHHHHHH----------S---SSCEEEEECCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CccCCCccccCCCccccCCHHHHHHHHHHHHHHh----------c---CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCc
Confidence 3457799999999999986 66666666655542 1 11389999999999999999998877 33
Q ss_pred cEEEEecc
Q psy11009 769 TFFNVCSS 776 (863)
Q Consensus 769 ~~i~vs~s 776 (863)
.++.+..+
T Consensus 76 ~il~~a~T 83 (459)
T 3upu_A 76 GIILAAPT 83 (459)
T ss_dssp CEEEEESS
T ss_pred eEEEecCc
Confidence 44444443
No 186
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.54 E-value=3.7e-05 Score=78.44 Aligned_cols=74 Identities=9% Similarity=-0.012 Sum_probs=52.8
Q ss_pred CCCCcEEEEEecccccccccc-cchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEecCCCHHH
Q psy11009 159 SPPGPTLAVAKMFSSLAVQKL-LRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIPLPSKAG 237 (863)
Q Consensus 159 ~~~~P~IlFiDEiDal~~~R~-~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~lPd~~~ 237 (863)
...+.+||+|||++.++..|. ..+.-+ +|..+..-. ..++-||.+|+.+..||.++++|++.+++++.|....
T Consensus 84 ~~~~~~vliIDEAq~l~~~~~~~~e~~r----ll~~l~~~r--~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~~ 157 (199)
T 2r2a_A 84 PENIGSIVIVDEAQDVWPARSAGSKIPE----NVQWLNTHR--HQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGM 157 (199)
T ss_dssp GGGTTCEEEETTGGGTSBCCCTTCCCCH----HHHGGGGTT--TTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSCC
T ss_pred cccCceEEEEEChhhhccCccccchhHH----HHHHHHhcC--cCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccCc
Confidence 345688999999999987663 222222 444554322 2256778888889999999888999999999876554
Q ss_pred H
Q psy11009 238 R 238 (863)
Q Consensus 238 R 238 (863)
|
T Consensus 158 ~ 158 (199)
T 2r2a_A 158 R 158 (199)
T ss_dssp E
T ss_pred c
Confidence 4
No 187
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.46 E-value=0.00024 Score=93.15 Aligned_cols=116 Identities=18% Similarity=0.183 Sum_probs=73.3
Q ss_pred cCCCChhhhhcc---C-CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc----cc--------hhH
Q psy11009 727 LPMWMPEFFKGI---R-RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY----RG--------ESE 787 (863)
Q Consensus 727 ~pl~~pe~~~~~---~-~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~----~G--------e~e 787 (863)
++...+++.+-. + .+..-++|+|+||+|||+||..+|..+ +.++++++.......+ .| ..+
T Consensus 713 i~TG~~eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~ 792 (2050)
T 3cmu_A 713 ISTGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQP 792 (2050)
T ss_dssp ECCSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECC
T ss_pred eecCChHHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecC
Confidence 445555555433 3 566789999999999999999999877 4578888876544432 11 011
Q ss_pred HHHHHHHHHHH----hCCCeEEEEcCCCcccc-cC--C--CCchhhHHHHHHHHHHHHHhcCCC
Q psy11009 788 KLVRLLFEMAR----FYAPSTIFIDEIDSLCS-RR--G--SESEHEASRRVKSELLVQMDGLSS 842 (863)
Q Consensus 788 ~~ir~lf~~A~----~~~p~ILfIDEID~l~~-~R--~--~~~~~e~~~rv~~~LL~~lD~l~~ 842 (863)
..+..++..++ ...|++||||.+..+.. .+ + ++...+...|.+++++..|..+..
T Consensus 793 ~~i~~i~~~~r~l~~~~~~~LVIIDsLq~i~~~~~~~~~~Gs~~q~La~Reis~ilr~Lk~lAk 856 (2050)
T 3cmu_A 793 DTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLK 856 (2050)
T ss_dssp SSHHHHHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhccCCCEEEEcchhhhcccccccCCCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 12333444333 36799999999999976 21 1 111113334557887777777654
No 188
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.43 E-value=0.00062 Score=75.48 Aligned_cols=102 Identities=21% Similarity=0.238 Sum_probs=62.4
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc----------------cchhHHHHHHHHHHHHhC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY----------------RGESEKLVRLLFEMARFY 800 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~----------------~Ge~e~~ir~lf~~A~~~ 800 (863)
.+..-++|+||||||||+|+..++..+ +..+++++........ ....+..+..+....+..
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSG 138 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhc
Confidence 344578899999999999999998775 6677777765422110 111233333333344457
Q ss_pred CCeEEEEcCCCcccccC---CCCchh--hHHHHHHHHHHHHHhcCC
Q psy11009 801 APSTIFIDEIDSLCSRR---GSESEH--EASRRVKSELLVQMDGLS 841 (863)
Q Consensus 801 ~p~ILfIDEID~l~~~R---~~~~~~--e~~~rv~~~LL~~lD~l~ 841 (863)
.+.+++||.+..+.+.. +..++. ....+.+.++|..|..+.
T Consensus 139 ~~dlvVIDSi~~l~~~~el~g~~G~~q~~~qar~la~~L~~L~~la 184 (356)
T 3hr8_A 139 VVDLIVVDSVAALVPRAEIEGAMGDMQVGLQARLMSQALRKIAGSV 184 (356)
T ss_dssp CCSEEEEECTTTCCCHHHHTTCCCSSCSSHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEehHhhhhcChhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999887521 111111 123456667766665553
No 189
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.43 E-value=0.00059 Score=75.90 Aligned_cols=77 Identities=21% Similarity=0.246 Sum_probs=51.6
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc----c------------chhHHHHHHHHHHHHhC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY----R------------GESEKLVRLLFEMARFY 800 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~----~------------Ge~e~~ir~lf~~A~~~ 800 (863)
.+..-++|+||||+|||++|..+|..+ +.++++++...-.... . ...+..+..+....+..
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~ 151 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSG 151 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcC
Confidence 445678999999999999999988765 6677777765422111 0 11233333333344456
Q ss_pred CCeEEEEcCCCccccc
Q psy11009 801 APSTIFIDEIDSLCSR 816 (863)
Q Consensus 801 ~p~ILfIDEID~l~~~ 816 (863)
.+++|+||.+..+.++
T Consensus 152 ~~~lVVIDsl~~l~~~ 167 (366)
T 1xp8_A 152 AIDVVVVDSVAALTPR 167 (366)
T ss_dssp CCSEEEEECTTTCCCS
T ss_pred CCCEEEEeChHHhccc
Confidence 7899999999999753
No 190
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.40 E-value=0.0008 Score=67.86 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=27.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEec
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCS 775 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~ 775 (863)
+..-++|+||||+|||++++.++..+ +..++.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 44578999999999999999998654 455655543
No 191
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.34 E-value=5.8e-05 Score=86.24 Aligned_cols=125 Identities=16% Similarity=0.066 Sum_probs=70.9
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHH-HHHhCCcEEEEecc-----cccccccc
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAV-ATECGTTFFNVCSS-----TLTSKYRG 784 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraI-A~el~~~~i~vs~s-----~l~~~~~G 784 (863)
|.|++.+|+.|.-.+.-.-.. .+..-++||.|+||| ||++|+++ ++.+... +++... .+.....+
T Consensus 215 I~G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~-~ft~g~~ss~~gLt~s~r~ 285 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRG-VYVDLRRTELTDLTAVLKE 285 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSE-EEEEGGGCCHHHHSEEEEE
T ss_pred cCCCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCe-EEecCCCCCccCceEEEEc
Confidence 899999988887655311100 011127999999999 99999999 6654332 222211 11111100
Q ss_pred hh-HHHHHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcC----CCCCCCCCceEEEEecCCC
Q psy11009 785 ES-EKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL----SSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 785 e~-e~~ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l----~~~~~~~~~VvVIaTTN~P 859 (863)
.+ -......+..| ..+++|||||+.+.. .++..|+..|+.- .+. .-...+.||||+|..
T Consensus 286 ~tG~~~~~G~l~LA---dgGvl~lDEIn~~~~------------~~qsaLlEaMEe~~VtI~G~-~lparf~VIAA~NP~ 349 (506)
T 3f8t_A 286 DRGWALRAGAAVLA---DGGILAVDHLEGAPE------------PHRWALMEAMDKGTVTVDGI-ALNARCAVLAAINPG 349 (506)
T ss_dssp SSSEEEEECHHHHT---TTSEEEEECCTTCCH------------HHHHHHHHHHHHSEEEETTE-EEECCCEEEEEECCC
T ss_pred CCCcccCCCeeEEc---CCCeeehHhhhhCCH------------HHHHHHHHHHhCCcEEECCE-EcCCCeEEEEEeCcc
Confidence 00 00000112222 368999999988743 4678888888621 111 112347899999975
Q ss_pred C
Q psy11009 860 W 860 (863)
Q Consensus 860 ~ 860 (863)
+
T Consensus 350 ~ 350 (506)
T 3f8t_A 350 E 350 (506)
T ss_dssp C
T ss_pred c
Confidence 4
No 192
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.34 E-value=4.3e-05 Score=75.33 Aligned_cols=24 Identities=17% Similarity=0.045 Sum_probs=19.9
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccc
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM 107 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (863)
..++++| |.||||||+++++++..
T Consensus 38 g~~~~l~---------G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFV---------GSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEEC---------CSSSSSHHHHHHHHHHH
T ss_pred CCEEEEE---------CCCCCCHHHHHHHHHHH
Confidence 3456777 89999999999999875
No 193
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.33 E-value=0.00061 Score=69.57 Aligned_cols=77 Identities=16% Similarity=0.086 Sum_probs=49.3
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHH--h-------CCcEEEEeccccccc-----c---cc------------------
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATE--C-------GTTFFNVCSSTLTSK-----Y---RG------------------ 784 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~e--l-------~~~~i~vs~s~l~~~-----~---~G------------------ 784 (863)
.+..-++|+||||+|||++++.+|.. + +...++++....... + .|
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 101 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAFNT 101 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecCCH
Confidence 34457899999999999999999985 2 456777766541000 0 00
Q ss_pred -hhHHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q psy11009 785 -ESEKLVRLLFEMARFYAPSTIFIDEIDSLCSR 816 (863)
Q Consensus 785 -e~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~ 816 (863)
+....+..+........|.+|+|||+..+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 102 DHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 00111223444444567999999999988653
No 194
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.29 E-value=0.002 Score=64.71 Aligned_cols=38 Identities=26% Similarity=0.223 Sum_probs=31.3
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~ 777 (863)
.+..-++|+||||+|||++++.+|...+..+++++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34457899999999999999999986677888887654
No 195
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.27 E-value=0.00054 Score=75.68 Aligned_cols=76 Identities=20% Similarity=0.208 Sum_probs=50.8
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc----cc------------hhHHHHHHHHHHHHhC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY----RG------------ESEKLVRLLFEMARFY 800 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~----~G------------e~e~~ir~lf~~A~~~ 800 (863)
.+..-++|+||||+|||+||..++..+ +..+++++........ .| ..+..+..+...++..
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~ 138 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSG 138 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcC
Confidence 344578999999999999999998665 5677777654322110 11 1233333334444456
Q ss_pred CCeEEEEcCCCcccc
Q psy11009 801 APSTIFIDEIDSLCS 815 (863)
Q Consensus 801 ~p~ILfIDEID~l~~ 815 (863)
.|.+|+||++..+..
T Consensus 139 ~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 139 ALDIIVIDSVAALVP 153 (349)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcChHhhcc
Confidence 799999999999974
No 196
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.21 E-value=0.00066 Score=66.21 Aligned_cols=34 Identities=9% Similarity=0.266 Sum_probs=30.4
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
.-++|+|+||+|||+++++++..++.+++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 5689999999999999999999999998876654
No 197
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.20 E-value=0.00037 Score=94.87 Aligned_cols=85 Identities=11% Similarity=0.036 Sum_probs=59.0
Q ss_pred CCcEEEEEeccccccccc-ccchhHhHHHHHHHHhhccCCC-------CCCeEEEEccCCC-----CCccHHHhhccceE
Q psy11009 161 PGPTLAVAKMFSSLAVQK-LLRGSKTFRTLCIHKYRLLTFP-------STPVQYSIQKGIP-----WDIDEALRRRLEKR 227 (863)
Q Consensus 161 ~~P~IlFiDEiDal~~~R-~~~~~~~v~n~lL~~ld~~~~~-------~~~VivIaATN~p-----~~LD~AllRRFD~~ 227 (863)
++.+|+||||++--...+ ++...-.++++++.. .++-.+ -.++.+|||.|.| ..|+++|+|||-.
T Consensus 1373 Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v- 1450 (3245)
T 3vkg_A 1373 GKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI- 1450 (3245)
T ss_dssp TCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE-
T ss_pred CceEEEEecccCCCCccccccccHHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE-
Confidence 667999999998543322 112233344444432 122111 1268899999998 4799999999987
Q ss_pred EEecCCCHHHHHHHHHHHhc
Q psy11009 228 IYIPLPSKAGREALLKINLK 247 (863)
Q Consensus 228 I~i~lPd~~~R~~IL~~~l~ 247 (863)
|+++.|+.++...|+..++.
T Consensus 1451 i~i~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1451 LLVDFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp EECCCCCHHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHHH
Confidence 99999999999999887664
No 198
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.17 E-value=0.00019 Score=69.55 Aligned_cols=62 Identities=10% Similarity=0.126 Sum_probs=34.1
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCC-CCCcc--HHHhhccceEEEecC
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGI-PWDID--EALRRRLEKRIYIPL 232 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~-p~~LD--~AllRRFD~~I~i~l 232 (863)
.|.||+|||++.+.... .+.+-.++..+ ...+..++|| |||. |..+. +++..||..-..+.+
T Consensus 83 ~~~lLilDE~~~~~~~~-----~~~l~~li~~~---~~~g~~~iii-ts~~~p~~l~~~~~L~SRl~~g~~~~l 147 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEE-----QALLFSIFNRF---RNSGKGFLLL-GSEYTPQQLVIREDLRTRMAYCLVYEV 147 (149)
T ss_dssp GCSEEEEESTTCCCSHH-----HHHHHHHHHHH---HHHTCCEEEE-EESSCTTTSSCCHHHHHHGGGSEECCC
T ss_pred CCCEEEEeCccccChHH-----HHHHHHHHHHH---HHcCCcEEEE-ECCCCHHHccccHHHHHHHhcCeeEEe
Confidence 47899999999865422 22222333332 2221122444 6664 55443 777778876665543
No 199
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.14 E-value=2.5e-05 Score=87.34 Aligned_cols=62 Identities=10% Similarity=-0.106 Sum_probs=42.6
Q ss_pred EEEEEeccccccc-ccccchhHh--HHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhh--ccceEEEecC
Q psy11009 164 TLAVAKMFSSLAV-QKLLRGSKT--FRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRR--RLEKRIYIPL 232 (863)
Q Consensus 164 ~IlFiDEiDal~~-~R~~~~~~~--v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllR--RFD~~I~i~l 232 (863)
+++|+||++.+.. .|....... ....+...+|| .|.|+++|||++.| ++++| |+|..++...
T Consensus 218 ~~~l~dd~~~~~~~~r~l~~~~~~~~~~~l~~~ldG------~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 218 FLVVFEDVKGTGGESRDLPSGQGINNLDNLRDYLDG------SVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp SCEEETTCCCSTTTTTTCCCCSHHHHHHTTHHHHHC------SSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred hHHHHHHHHHHHHHHhhccccCcchHHHHHHHHhcC------CCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 5789999999886 342211111 22444555665 35678899999999 68888 9999988755
No 200
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.11 E-value=0.00087 Score=74.28 Aligned_cols=76 Identities=24% Similarity=0.258 Sum_probs=49.9
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccccc----cc------------hhHHHHHHHHHHHHhC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSKY----RG------------ESEKLVRLLFEMARFY 800 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~~----~G------------e~e~~ir~lf~~A~~~ 800 (863)
.+..-++|+||||+|||++|..+|..+ +.++++++........ .| ..+.....+-...+..
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~ 140 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 140 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhcc
Confidence 345678999999999999999998765 6678888764321110 00 1122222222333456
Q ss_pred CCeEEEEcCCCcccc
Q psy11009 801 APSTIFIDEIDSLCS 815 (863)
Q Consensus 801 ~p~ILfIDEID~l~~ 815 (863)
.+.+|+||.+..+..
T Consensus 141 ~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 141 AVDVIVVDSVAALTP 155 (356)
T ss_dssp CCSEEEEECGGGCCC
T ss_pred CCCEEEEcCHHHhcc
Confidence 789999999999875
No 201
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.10 E-value=0.00098 Score=72.48 Aligned_cols=76 Identities=17% Similarity=0.166 Sum_probs=50.8
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---------CCcEEEEeccccc-cc-------ccc----------------hh
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---------GTTFFNVCSSTLT-SK-------YRG----------------ES 786 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---------~~~~i~vs~s~l~-~~-------~~G----------------e~ 786 (863)
.+..-++|+||||+|||++|..+|..+ +..+++++..... .. ..| ..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~ 184 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINT 184 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCH
Confidence 444578999999999999999999875 5677888765421 00 000 01
Q ss_pred H---HHHHHHHHHHHh-CCCeEEEEcCCCcccc
Q psy11009 787 E---KLVRLLFEMARF-YAPSTIFIDEIDSLCS 815 (863)
Q Consensus 787 e---~~ir~lf~~A~~-~~p~ILfIDEID~l~~ 815 (863)
+ ..+..+....+. ..+.+|+||.+..+..
T Consensus 185 ~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 185 DHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 1 123334444444 6789999999999864
No 202
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.08 E-value=0.001 Score=71.41 Aligned_cols=107 Identities=13% Similarity=0.079 Sum_probs=64.8
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccH---------HHhhccceEEEecC
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDE---------ALRRRLEKRIYIPL 232 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~---------AllRRFD~~I~i~l 232 (863)
+|+||+|||++.+.... +...-..+..+ ++... ++.+|.+++....+.. .+..|+...|.+++
T Consensus 137 ~~~vlvlDe~~~~~~~~-~~~~~~~l~~~---~~~~~----~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~ 208 (357)
T 2fna_A 137 DNVIIVLDEAQELVKLR-GVNLLPALAYA---YDNLK----RIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKP 208 (357)
T ss_dssp SCEEEEEETGGGGGGCT-TCCCHHHHHHH---HHHCT----TEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECC
T ss_pred CCeEEEEECHHHhhccC-chhHHHHHHHH---HHcCC----CeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCC
Confidence 59999999999986421 11111222222 23221 4666666654322221 12237778999999
Q ss_pred CCHHHHHHHHHHHhccCCCCCcccHHHHhhhCCCCCHHHHHHHHHH
Q psy11009 233 PSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRD 278 (863)
Q Consensus 233 Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SGADI~~lv~~ 278 (863)
.+.++..+++...+.......+ +...+...|.|+-.. +..++..
T Consensus 209 l~~~e~~~~l~~~~~~~~~~~~-~~~~i~~~t~G~P~~-l~~~~~~ 252 (357)
T 2fna_A 209 FSREEAIEFLRRGFQEADIDFK-DYEVVYEKIGGIPGW-LTYFGFI 252 (357)
T ss_dssp CCHHHHHHHHHHHHHHHTCCCC-CHHHHHHHHCSCHHH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHhCCCHHH-HHHHHHH
Confidence 9999999999987753333322 238899999997664 5555543
No 203
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.04 E-value=0.00035 Score=68.72 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=29.8
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.+.++|+||||||||++++.+|..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 458999999999999999999999999987654
No 204
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.03 E-value=0.0047 Score=69.47 Aligned_cols=77 Identities=18% Similarity=0.162 Sum_probs=47.6
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---------CCcEEEEeccccccc--------ccc------------------
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---------GTTFFNVCSSTLTSK--------YRG------------------ 784 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---------~~~~i~vs~s~l~~~--------~~G------------------ 784 (863)
.+..-++|+||||||||+|++.+|-.+ +...++++....... ..|
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~~~ 255 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAYNA 255 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccCCh
Confidence 445578999999999999999776443 234777766542110 000
Q ss_pred -hhHHHHHHHHHHHHhCCCeEEEEcCCCccccc
Q psy11009 785 -ESEKLVRLLFEMARFYAPSTIFIDEIDSLCSR 816 (863)
Q Consensus 785 -e~e~~ir~lf~~A~~~~p~ILfIDEID~l~~~ 816 (863)
.....+..+........|.+|+||++-.+...
T Consensus 256 ~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~ 288 (400)
T 3lda_A 256 DHQLRLLDAAAQMMSESRFSLIVVDSVMALYRT 288 (400)
T ss_dssp HHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC-
T ss_pred HHHHHHHHHHHHHHHhcCCceEEecchhhhCch
Confidence 00112223334444567999999999888653
No 205
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.02 E-value=0.0022 Score=70.44 Aligned_cols=76 Identities=16% Similarity=0.096 Sum_probs=49.5
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---------CCcEEEEecccccc-c----c---c------------------c
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---------GTTFFNVCSSTLTS-K----Y---R------------------G 784 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---------~~~~i~vs~s~l~~-~----~---~------------------G 784 (863)
.+..-++|+||||+|||++|..+|..+ +..+++++...... . + . .
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~~~ 199 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAYTS 199 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCST
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecCCH
Confidence 344567899999999999999999873 45777777654211 0 0 0 0
Q ss_pred -hhHHHHHHHHHHHHh--CCCeEEEEcCCCcccc
Q psy11009 785 -ESEKLVRLLFEMARF--YAPSTIFIDEIDSLCS 815 (863)
Q Consensus 785 -e~e~~ir~lf~~A~~--~~p~ILfIDEID~l~~ 815 (863)
+....+..+....+. ..+.+|+||.+..+..
T Consensus 200 e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 200 EHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp THHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred HHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 011122233344444 6789999999999874
No 206
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.98 E-value=0.0024 Score=65.37 Aligned_cols=36 Identities=31% Similarity=0.283 Sum_probs=26.4
Q ss_pred CCCceEEEECCCCCChHHHHHHHH--HH--hCCcEEEEec
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVA--TE--CGTTFFNVCS 775 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA--~e--l~~~~i~vs~ 775 (863)
.+..-+.|.||+|+|||+|+++++ .. .+...+.+..
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 445678999999999999999998 33 2444444443
No 207
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.96 E-value=0.0053 Score=67.61 Aligned_cols=38 Identities=21% Similarity=0.210 Sum_probs=29.8
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---------CCcEEEEeccc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---------GTTFFNVCSST 777 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---------~~~~i~vs~s~ 777 (863)
.+..-+.|+||||+|||+|++.++..+ +..+++++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 455578899999999999999999887 24557776643
No 208
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.95 E-value=0.0026 Score=64.21 Aligned_cols=27 Identities=30% Similarity=0.289 Sum_probs=23.1
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.+..-+.|.||+|+|||+|++.++..+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 444578899999999999999999854
No 209
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.90 E-value=0.00058 Score=68.52 Aligned_cols=34 Identities=29% Similarity=0.451 Sum_probs=30.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
+.+.++|.||||||||++++++|..++.+++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3468999999999999999999999999987654
No 210
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.85 E-value=0.0035 Score=71.32 Aligned_cols=73 Identities=25% Similarity=0.231 Sum_probs=50.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccc-------------------cc-cchhHHHHHHHHHHH
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTS-------------------KY-RGESEKLVRLLFEMA 797 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~-------------------~~-~Ge~e~~ir~lf~~A 797 (863)
++.-+++.||+|+|||+++..+|..+ |..+.-+++..... .. .......++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45788999999999999999998776 66666666543211 00 112334456667777
Q ss_pred HhCCCeEEEEcCCCcc
Q psy11009 798 RFYAPSTIFIDEIDSL 813 (863)
Q Consensus 798 ~~~~p~ILfIDEID~l 813 (863)
+...+.+||||....+
T Consensus 179 ~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHTTCSEEEEECCCCS
T ss_pred HhCCCCEEEEECCCcc
Confidence 7667899999988543
No 211
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=96.77 E-value=0.00087 Score=74.87 Aligned_cols=110 Identities=15% Similarity=0.069 Sum_probs=63.5
Q ss_pred EEEEEecccccccccccchhHhHHHHHHHHhhc-----cCCC---CCCeEEEEccCCC-------CCccHHHhhccceEE
Q psy11009 164 TLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRL-----LTFP---STPVQYSIQKGIP-------WDIDEALRRRLEKRI 228 (863)
Q Consensus 164 ~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~-----~~~~---~~~VivIaATN~p-------~~LD~AllRRFD~~I 228 (863)
.+|||||++.+- ..+...||..|+. .+.. ..+|-||+|||+. ..+.+.|..|+...
T Consensus 233 gtlfldei~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~- 303 (387)
T 1ny5_A 233 GTLFLDEIGELS--------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVI- 303 (387)
T ss_dssp SEEEEESGGGCC--------HHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTE-
T ss_pred cEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCC-
Confidence 599999999885 3445556665532 1111 2267899999973 34555666666532
Q ss_pred EecCCCHH----HHHHHHHHHhcc----CCCC-CcccHHHHhhhC-CCCCHH--HHHHHHHHHHHH
Q psy11009 229 YIPLPSKA----GREALLKINLKE----VKVD-PAVDLTHIASQL-DGYSGA--DITNVCRDASMM 282 (863)
Q Consensus 229 ~i~lPd~~----~R~~IL~~~l~~----~~l~-~dvdl~~LA~~T-eG~SGA--DI~~lv~~Aal~ 282 (863)
.|.+|... ....+.++++.+ .... ..++.+.+.... ..|.|- +|++++..|+..
T Consensus 304 ~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~ 369 (387)
T 1ny5_A 304 EIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLF 369 (387)
T ss_dssp EEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHH
T ss_pred eecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 34455544 444455666532 2222 234444443333 346664 999999888654
No 212
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.74 E-value=0.00095 Score=64.31 Aligned_cols=31 Identities=16% Similarity=0.190 Sum_probs=28.1
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
-|+|.||||||||++++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999999887654
No 213
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.73 E-value=0.014 Score=67.88 Aligned_cols=52 Identities=15% Similarity=0.071 Sum_probs=40.2
Q ss_pred CCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHH
Q psy11009 703 NPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 703 ~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~ 764 (863)
..+.....++|.+...+.|.+.+... ....+-++++||+|+|||+||+.++.
T Consensus 118 ~~P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 118 GVPQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 34556678999999999999877311 12346789999999999999999864
No 214
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.73 E-value=0.00082 Score=65.76 Aligned_cols=30 Identities=30% Similarity=0.614 Sum_probs=27.6
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
.++|.||||||||++|+.+|..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999988764
No 215
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.73 E-value=0.0041 Score=67.87 Aligned_cols=78 Identities=15% Similarity=0.130 Sum_probs=48.4
Q ss_pred CCCCceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEecccccccc----cc------------hhHHHHHHHHHH-
Q psy11009 739 RRPWKGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVCSSTLTSKY----RG------------ESEKLVRLLFEM- 796 (863)
Q Consensus 739 ~~p~kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs~s~l~~~~----~G------------e~e~~ir~lf~~- 796 (863)
|.|+.-++++||||+|||+|+..++..+ +..+++++...-.... .| ..+...-.+.+.
T Consensus 25 Gl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 25 GMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp CBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred CCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 3333357899999999999987776554 5678888765422110 01 112220112222
Q ss_pred --HHhCCCeEEEEcCCCccccc
Q psy11009 797 --ARFYAPSTIFIDEIDSLCSR 816 (863)
Q Consensus 797 --A~~~~p~ILfIDEID~l~~~ 816 (863)
.+...|.+|+||-|-.+.++
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBCC
T ss_pred HHhhccCceEEEEecccccccc
Confidence 34567999999999999853
No 216
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.72 E-value=0.021 Score=61.77 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=46.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccc-------c-------------cchhHHHHHHHHHH
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSK-------Y-------------RGESEKLVRLLFEM 796 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~-------~-------------~Ge~e~~ir~lf~~ 796 (863)
.+++-++|.||+|+|||+++..+|..+ +..+..+++...... | .+.........+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 345678899999999999999999876 455555544322110 0 01112222334445
Q ss_pred HHhCCCeEEEEcCCCc
Q psy11009 797 ARFYAPSTIFIDEIDS 812 (863)
Q Consensus 797 A~~~~p~ILfIDEID~ 812 (863)
+....+.+|+||+.-.
T Consensus 182 a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 182 ALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHTTCSEEEEEECCC
T ss_pred HHhcCCCEEEEECCCc
Confidence 5567889999998853
No 217
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.71 E-value=0.0071 Score=65.34 Aligned_cols=89 Identities=15% Similarity=0.141 Sum_probs=54.6
Q ss_pred cCCCChhhhhcc--C-CCCceEEEECCCCCChHHHHHHHHHHh---------------C----CcEEEEeccccc-cc--
Q psy11009 727 LPMWMPEFFKGI--R-RPWKGVLMVGPPGTGKTMLAKAVATEC---------------G----TTFFNVCSSTLT-SK-- 781 (863)
Q Consensus 727 ~pl~~pe~~~~~--~-~p~kgvLL~GPPGtGKT~LAraIA~el---------------~----~~~i~vs~s~l~-~~-- 781 (863)
.+...+.+-.-. + .+..-++|+||||+|||++|..+|..+ | ..+++++...-. ..
T Consensus 80 i~TG~~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l 159 (322)
T 2i1q_A 80 LSTSSSELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERI 159 (322)
T ss_dssp ECCSCHHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHH
T ss_pred ecCCChhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHH
Confidence 444555544433 3 444568999999999999999998763 2 567777765421 00
Q ss_pred --c---cc----------------hhH---HHHHHHHHHHHh-CCCeEEEEcCCCcccc
Q psy11009 782 --Y---RG----------------ESE---KLVRLLFEMARF-YAPSTIFIDEIDSLCS 815 (863)
Q Consensus 782 --~---~G----------------e~e---~~ir~lf~~A~~-~~p~ILfIDEID~l~~ 815 (863)
+ .| ..+ ..+..+....+. ..+.+|+||.+..+..
T Consensus 160 ~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 160 MQMAEHAGIDGQTVLDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHHHHHHTCCHHHHHHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred HHHHHHcCCCHHHHhcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 0 00 011 122233344444 5689999999999864
No 218
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.70 E-value=0.00099 Score=65.39 Aligned_cols=33 Identities=39% Similarity=0.737 Sum_probs=29.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.+.|+|+|+||+|||++++.++..++.+++.++
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d 43 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVG 43 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHH
Confidence 357999999999999999999999999887654
No 219
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.69 E-value=0.0092 Score=60.78 Aligned_cols=37 Identities=30% Similarity=0.379 Sum_probs=27.8
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSS 776 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s 776 (863)
.+..-++|+||||+|||+++..+|..+ +..+++++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 344578999999999999988886553 5566666543
No 220
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.64 E-value=0.0011 Score=64.23 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=29.2
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
..++|.|+||||||++++.+|..++.+++..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 48999999999999999999999999987653
No 221
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.63 E-value=0.001 Score=65.43 Aligned_cols=31 Identities=26% Similarity=0.585 Sum_probs=28.2
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.|+|.|+||||||++|+.+|..+|.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999999987654
No 222
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.58 E-value=0.036 Score=59.97 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=28.5
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEec
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCS 775 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~ 775 (863)
.+..-++|.|+||+|||++|..+|..+ +.++++++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 455578999999999999999998665 457777664
No 223
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.57 E-value=0.0016 Score=63.16 Aligned_cols=30 Identities=27% Similarity=0.759 Sum_probs=27.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
..++|.||||||||++++.+|..++.+++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 468999999999999999999999987664
No 224
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.55 E-value=0.0083 Score=62.17 Aligned_cols=33 Identities=33% Similarity=0.354 Sum_probs=28.4
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
.++++||+|+|||.+|.+++..++..++.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 599999999999999999998887777776654
No 225
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.55 E-value=0.0013 Score=65.23 Aligned_cols=33 Identities=39% Similarity=0.596 Sum_probs=28.8
Q ss_pred CceEEEECCCCCChHHHHHHHHHH-hCCcEEEEe
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATE-CGTTFFNVC 774 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~e-l~~~~i~vs 774 (863)
...++|+|+||||||++++.+|.. +|.+++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 357999999999999999999999 788877654
No 226
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.54 E-value=0.0017 Score=63.85 Aligned_cols=32 Identities=31% Similarity=0.417 Sum_probs=28.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
+.-++|.|+||+|||++++.++..++.+++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 35789999999999999999999999888764
No 227
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.50 E-value=0.0018 Score=64.69 Aligned_cols=32 Identities=34% Similarity=0.561 Sum_probs=28.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
+..|+|.|+||+|||++|+.++..++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 34689999999999999999999999988765
No 228
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.49 E-value=0.0041 Score=66.61 Aligned_cols=110 Identities=19% Similarity=0.231 Sum_probs=65.2
Q ss_pred CcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccH---------HHhhccceEEEecC
Q psy11009 162 GPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDE---------ALRRRLEKRIYIPL 232 (863)
Q Consensus 162 ~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~---------AllRRFD~~I~i~l 232 (863)
+|+||+|||++.+.... ......+...|-..++... ++.+|.++.....++. .+..|+...|++++
T Consensus 128 ~~~vlvlDe~~~~~~~~-~~~~~~~~~~L~~~~~~~~----~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~p 202 (350)
T 2qen_A 128 GEFIVAFDEAQYLRFYG-SRGGKELLALFAYAYDSLP----NLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKP 202 (350)
T ss_dssp SCEEEEEETGGGGGGBT-TTTTHHHHHHHHHHHHHCT----TEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCC
T ss_pred CCEEEEEeCHHHHhccC-ccchhhHHHHHHHHHHhcC----CeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCC
Confidence 49999999999986411 0112233333322333321 4566665544221222 23337777899999
Q ss_pred CCHHHHHHHHHHHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHH
Q psy11009 233 PSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGADITNVCR 277 (863)
Q Consensus 233 Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~ 277 (863)
-+.++-.+++...+...... .+..+..+...|.|+-.. |..++.
T Consensus 203 l~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tgG~P~~-l~~~~~ 247 (350)
T 2qen_A 203 FDKDTSVEFLKRGFREVNLDVPENEIEEAVELLDGIPGW-LVVFGV 247 (350)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHTTCHHH-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHH-HHHHHH
Confidence 99999999998877543322 233567788889887653 554443
No 229
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.48 E-value=0.004 Score=65.05 Aligned_cols=39 Identities=18% Similarity=0.293 Sum_probs=33.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
..+..++|.||||+|||++|+.++..++..++.+++..+
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 344679999999999999999999999876777777665
No 230
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.48 E-value=0.0017 Score=63.76 Aligned_cols=31 Identities=26% Similarity=0.464 Sum_probs=27.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
.-|+|.|+||||||++|+.++..++.+++..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 5689999999999999999999999887654
No 231
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.47 E-value=0.0026 Score=69.52 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=31.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEeccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~ 777 (863)
+.++|+||+|||||++|+.+|+.++..++.++.-.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 57899999999999999999999998888886543
No 232
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.47 E-value=0.0015 Score=62.54 Aligned_cols=29 Identities=34% Similarity=0.610 Sum_probs=26.2
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
-++|.||||+|||++|+.+ ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8899988764
No 233
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.45 E-value=0.01 Score=67.39 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=47.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccc----------------c---cc-hhHHHHHHHHHHH
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSK----------------Y---RG-ESEKLVRLLFEMA 797 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~----------------~---~G-e~e~~ir~lf~~A 797 (863)
+++-++|.||+|+|||+++..+|..+ |..+..+++...... + .+ ............+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 45678899999999999999998776 666666554322110 0 01 1222234445555
Q ss_pred HhCCCeEEEEcCCCcc
Q psy11009 798 RFYAPSTIFIDEIDSL 813 (863)
Q Consensus 798 ~~~~p~ILfIDEID~l 813 (863)
....+.+|+||....+
T Consensus 176 ~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRH 191 (433)
T ss_dssp TTTTCSEEEEEECCCS
T ss_pred HhcCCCEEEEECCCCc
Confidence 5567899999988544
No 234
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.44 E-value=0.0018 Score=63.96 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=28.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
+.-++|.|+||||||++++.+|..++.+++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35799999999999999999999999887754
No 235
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.43 E-value=0.0017 Score=62.82 Aligned_cols=32 Identities=28% Similarity=0.519 Sum_probs=28.2
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
+.|+|.|+||||||++|+.++..++.+++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d 34 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTD 34 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEccc
Confidence 35899999999999999999999998877543
No 236
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.41 E-value=0.068 Score=60.69 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=28.4
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCcEEEEec
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC----GTTFFNVCS 775 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el----~~~~i~vs~ 775 (863)
.+..-++|.|+||+|||+++..+|..+ |.+++.++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 455578999999999999999987754 557777664
No 237
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.41 E-value=0.002 Score=67.64 Aligned_cols=32 Identities=31% Similarity=0.367 Sum_probs=29.1
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEec
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs~ 775 (863)
-++|.||||||||++|+.+|..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999999887754
No 238
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.40 E-value=0.0016 Score=64.15 Aligned_cols=38 Identities=32% Similarity=0.422 Sum_probs=31.8
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
++.-++|.||||+|||+++++++...+...+.++..++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 34578999999999999999999988777777776554
No 239
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.39 E-value=0.0031 Score=67.54 Aligned_cols=38 Identities=29% Similarity=0.399 Sum_probs=30.8
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l 778 (863)
.+.-++|.||||+|||++|+.++..++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 34678999999999999999999998555666776444
No 240
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.39 E-value=0.0028 Score=74.55 Aligned_cols=34 Identities=35% Similarity=0.458 Sum_probs=27.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSS 776 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s 776 (863)
+.+++.||||||||+++.+++..+ +.+++.+..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT 241 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPT 241 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCc
Confidence 578999999999999999998765 6666655443
No 241
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.38 E-value=0.0023 Score=62.80 Aligned_cols=31 Identities=35% Similarity=0.639 Sum_probs=27.4
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
..++|.|+||||||++++.+|..++.+++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~ 35 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLST 35 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4689999999999999999999999877654
No 242
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.38 E-value=0.012 Score=59.88 Aligned_cols=102 Identities=13% Similarity=0.061 Sum_probs=59.2
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccc---------cccccc-------------c----hhHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSST---------LTSKYR-------------G----ESEKLVRLL 793 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~---------l~~~~~-------------G----e~e~~ir~l 793 (863)
..+++|+++|.|||++|-++|-.+ |..+..+.... +..... . +........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 478999999999999999998775 77777763221 222220 0 112333444
Q ss_pred HHHHHh----CCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHHhcCCCCCCCCCceEEEEecCCC
Q psy11009 794 FEMARF----YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859 (863)
Q Consensus 794 f~~A~~----~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~lD~l~~~~~~~~~VvVIaTTN~P 859 (863)
++.++. ...++|++||+-....-+-- -..+++..+..- ...+-||.|+|.+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l---------~~~ev~~~l~~R------p~~~~vIlTGr~a 163 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL---------PLEEVISALNAR------PGHQTVIITGRGC 163 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS---------CHHHHHHHHHTS------CTTCEEEEECSSC
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC---------CHHHHHHHHHhC------cCCCEEEEECCCC
Confidence 544443 45789999999654221100 023455555321 2235577788876
No 243
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.37 E-value=0.0027 Score=64.50 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=28.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
+..|+|.|+||+|||++++.+|..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 35799999999999999999999999887654
No 244
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.36 E-value=0.0015 Score=65.19 Aligned_cols=23 Identities=13% Similarity=0.004 Sum_probs=20.1
Q ss_pred cceeEeeecccccccCcCCCcccccccccccc
Q psy11009 76 IGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM 107 (863)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (863)
.++++| |.||||||++|+++++.
T Consensus 55 ~~~~l~---------G~~GtGKT~la~~i~~~ 77 (202)
T 2w58_A 55 KGLYLH---------GSFGVGKTYLLAAIANE 77 (202)
T ss_dssp CEEEEE---------CSTTSSHHHHHHHHHHH
T ss_pred CeEEEE---------CCCCCCHHHHHHHHHHH
Confidence 577888 99999999999998874
No 245
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.33 E-value=0.0072 Score=63.42 Aligned_cols=36 Identities=22% Similarity=0.377 Sum_probs=30.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHH---hCCcEEEEecccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE---CGTTFFNVCSSTL 778 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e---l~~~~i~vs~s~l 778 (863)
.-|+|.|+||+|||++|+.++.. .|.+++.++...+
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 46899999999999999999998 6888876665544
No 246
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.30 E-value=0.0043 Score=68.73 Aligned_cols=71 Identities=18% Similarity=0.199 Sum_probs=44.8
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh----CCcEEEEec-ccccc---------cccchhHHHHHHHHHHHHhCCCeEEE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC----GTTFFNVCS-STLTS---------KYRGESEKLVRLLFEMARFYAPSTIF 806 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el----~~~~i~vs~-s~l~~---------~~~Ge~e~~ir~lf~~A~~~~p~ILf 806 (863)
+...+++.||+|+|||++.++++..+ +..++.+.- .++.. ...+.........+..+-...|.+|+
T Consensus 122 ~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvil 201 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIIL 201 (356)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEe
Confidence 33468999999999999999998876 233443321 11110 01111112234466667778999999
Q ss_pred EcCCC
Q psy11009 807 IDEID 811 (863)
Q Consensus 807 IDEID 811 (863)
+||+-
T Consensus 202 lDEp~ 206 (356)
T 3jvv_A 202 VGEMR 206 (356)
T ss_dssp ESCCC
T ss_pred cCCCC
Confidence 99994
No 247
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.29 E-value=0.0081 Score=63.45 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-++|+||||+|||+|+..++..+
T Consensus 29 ~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 29 AGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44578999999999999999998654
No 248
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.29 E-value=0.068 Score=60.53 Aligned_cols=36 Identities=22% Similarity=0.229 Sum_probs=28.2
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCcEEEEec
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC----GTTFFNVCS 775 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el----~~~~i~vs~ 775 (863)
.+..-++|.|+||+|||++|..+|... +.++++++.
T Consensus 198 ~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 444568999999999999999887654 567777665
No 249
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.28 E-value=0.0028 Score=63.38 Aligned_cols=33 Identities=27% Similarity=0.562 Sum_probs=28.8
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.+-|+|.|+||+|||++|+.++..++..++..+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCC
Confidence 457999999999999999999999998876543
No 250
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.28 E-value=0.0023 Score=63.28 Aligned_cols=31 Identities=26% Similarity=0.539 Sum_probs=27.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
.-|+|.|+||||||++|+.++..++.+++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999999877654
No 251
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.27 E-value=0.0036 Score=60.94 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=27.8
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
...++|.||||+|||++++.++..+|..++..
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~ 39 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEG
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeC
Confidence 45789999999999999999999998776653
No 252
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.25 E-value=0.0022 Score=62.58 Aligned_cols=29 Identities=28% Similarity=0.387 Sum_probs=23.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFF 771 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i 771 (863)
.-|+|.|+||+|||++|+.+++.++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999999887
No 253
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.25 E-value=0.0022 Score=62.80 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=27.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC-----CcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECG-----TTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~-----~~~i~v 773 (863)
.-++|.||||+|||++++.++..++ .+++.+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 4689999999999999999999987 676653
No 254
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.25 E-value=0.0026 Score=61.37 Aligned_cols=30 Identities=17% Similarity=0.432 Sum_probs=27.4
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
.|+|.|+||+|||++|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999888764
No 255
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.23 E-value=0.0025 Score=62.44 Aligned_cols=31 Identities=23% Similarity=0.476 Sum_probs=28.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
+-|+|.|+||||||++++.++..++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 5789999999999999999999999877754
No 256
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.22 E-value=0.0023 Score=62.12 Aligned_cols=30 Identities=33% Similarity=0.495 Sum_probs=24.7
Q ss_pred ceEEEECCCCCChHHHHHHHHH-HhCCcEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVAT-ECGTTFFN 772 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~-el~~~~i~ 772 (863)
.-++|.||||+|||++|+.++. .++..++.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~ 33 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNIN 33 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEEC
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEec
Confidence 4689999999999999999998 46655443
No 257
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.21 E-value=0.0025 Score=64.31 Aligned_cols=30 Identities=20% Similarity=0.521 Sum_probs=27.2
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
.|+|.||||+|||++|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999999887765
No 258
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.21 E-value=0.0025 Score=64.22 Aligned_cols=30 Identities=20% Similarity=0.469 Sum_probs=27.2
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
.|+|.||||+|||++|+.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999999999888755
No 259
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=96.21 E-value=0.0039 Score=62.52 Aligned_cols=32 Identities=41% Similarity=0.675 Sum_probs=27.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
++.-++|.||+|+|||+++++++..+|..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~ 59 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEFAE 59 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeEEc
Confidence 44678999999999999999999999876554
No 260
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.20 E-value=0.029 Score=57.04 Aligned_cols=36 Identities=31% Similarity=0.287 Sum_probs=27.2
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHH----hCCcEEEEec
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATE----CGTTFFNVCS 775 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~e----l~~~~i~vs~ 775 (863)
.+..-++++|+||+|||++|..+|.. .+.++++++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 44457899999999999999877543 3667777664
No 261
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.17 E-value=0.0041 Score=63.97 Aligned_cols=31 Identities=26% Similarity=0.476 Sum_probs=28.4
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
..|+|.|+||||||++|+.+|..++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5799999999999999999999999887765
No 262
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.15 E-value=0.026 Score=70.79 Aligned_cols=54 Identities=15% Similarity=0.055 Sum_probs=41.7
Q ss_pred cCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHH
Q psy11009 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 702 k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~e 765 (863)
...|.....++|.++..++|.+.+... ....+-+.|+|++|+|||+||+.++..
T Consensus 117 ~~~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 117 GGVPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TTCCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 345566778999999999999877311 123356889999999999999988765
No 263
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.14 E-value=0.0027 Score=64.91 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=28.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
..|+|.||||||||++++.+|..++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 5799999999999999999999999887754
No 264
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.14 E-value=0.0034 Score=65.33 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=29.3
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
++..|+|.||||+|||++|+.++..++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456899999999999999999999999887754
No 265
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.12 E-value=0.0034 Score=62.59 Aligned_cols=32 Identities=16% Similarity=0.378 Sum_probs=28.4
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
+-|+|.|+||||||++++.+++.++.+++..+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 57899999999999999999999998777643
No 266
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.09 E-value=0.0046 Score=60.59 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=32.3
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTL 778 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l 778 (863)
+..-+.|.|++|||||++++.++..+ |.+++.++...+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 34578899999999999999999998 999998876443
No 267
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.08 E-value=0.0046 Score=63.85 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=27.7
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
.++-|+|.||||+||+|.|+.||+.++.+.+.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 34678899999999999999999999977653
No 268
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.06 E-value=0.0046 Score=61.86 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=23.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC---GTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el---~~~~i~v 773 (863)
+-++++||||+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999986666553 5555544
No 269
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.05 E-value=0.07 Score=57.36 Aligned_cols=91 Identities=11% Similarity=0.051 Sum_probs=50.5
Q ss_pred ccccCCCChHHHHHHHhhh-hhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHH
Q psy11009 681 RFESYGCDNDLVEMLERDM-VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLA 759 (863)
Q Consensus 681 k~~~~g~d~~~~e~~~~~~-~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LA 759 (863)
.+-..+++.+.++.+-..+ ....+...++. +.+.+.+.+.+...+...... ....+++-++|.||+|+|||+++
T Consensus 48 ~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~l~~~~~~-~~~~~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 48 LLQETGIKESTKTNTLKKLLRFSVEAGGLTE----ENVVGKLQEILCDMLPSADKW-QEPIHSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHSSSCCCT----TTHHHHHHHHHHTTSCCGGGS-CCCCCSSEEEEEESTTSSHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHHhhcccCCCH----HHHHHHHHHHHHHHhCCcccc-cccCCCcEEEEECCCCCCHHHHH
Confidence 3345566766666655444 23222222211 344455554443333221111 11234568999999999999999
Q ss_pred HHHHHHh----CCcEEEEecc
Q psy11009 760 KAVATEC----GTTFFNVCSS 776 (863)
Q Consensus 760 raIA~el----~~~~i~vs~s 776 (863)
..+|..+ |..+..++..
T Consensus 123 ~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 123 AKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp HHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHhcCCEEEEEecC
Confidence 9998765 4466666543
No 270
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.02 E-value=0.0032 Score=64.02 Aligned_cols=31 Identities=23% Similarity=0.588 Sum_probs=28.2
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
..|+|.|+||||||++|+.+|..++.+++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999888765
No 271
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.01 E-value=0.0045 Score=63.26 Aligned_cols=29 Identities=38% Similarity=0.625 Sum_probs=26.0
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
.++|.||||+||+|.|+.||+.+|.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 37899999999999999999999987654
No 272
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.00 E-value=0.0087 Score=62.02 Aligned_cols=72 Identities=17% Similarity=0.092 Sum_probs=43.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccc-------ccccccchh-----HHHHHHHHHHHHh----CC
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSST-------LTSKYRGES-----EKLVRLLFEMARF----YA 801 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~-------l~~~~~Ge~-----e~~ir~lf~~A~~----~~ 801 (863)
+..-++++||||+|||+++..++..+ +..++.+.+.. +.+. .|-. ......+++.++. ..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~ 89 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDE 89 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTT
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCC
Confidence 33457789999999999988887766 55666654322 1111 1100 0011234554443 35
Q ss_pred CeEEEEcCCCcc
Q psy11009 802 PSTIFIDEIDSL 813 (863)
Q Consensus 802 p~ILfIDEID~l 813 (863)
+.+|+|||+..+
T Consensus 90 ~dvViIDEaQ~l 101 (223)
T 2b8t_A 90 TKVIGIDEVQFF 101 (223)
T ss_dssp CCEEEECSGGGS
T ss_pred CCEEEEecCccC
Confidence 889999999765
No 273
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.00 E-value=0.0046 Score=64.02 Aligned_cols=36 Identities=22% Similarity=0.545 Sum_probs=27.6
Q ss_pred ccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 737 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 737 ~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
.....+.-++|.||||+||||+++++++.+|...+.
T Consensus 22 ~~~~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 22 SMASKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp ----CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred HhcCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 333344689999999999999999999999876543
No 274
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.97 E-value=0.0053 Score=64.94 Aligned_cols=70 Identities=20% Similarity=0.284 Sum_probs=42.8
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC----CcEEEEecccc---c--------ccccchhHHHHHHHHHHHHhCCCeEE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG----TTFFNVCSSTL---T--------SKYRGESEKLVRLLFEMARFYAPSTI 805 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~----~~~i~vs~s~l---~--------~~~~Ge~e~~ir~lf~~A~~~~p~IL 805 (863)
+..-++|.||+|+|||++.++++..+. ..++. ....+ . ....|.....++..+..+-...|.+|
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~-~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~il 102 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIIT-IEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVI 102 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEE-EESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEE
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEE-cCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEE
Confidence 445688999999999999999988752 22222 21111 0 00111111223555555656689999
Q ss_pred EEcCCC
Q psy11009 806 FIDEID 811 (863)
Q Consensus 806 fIDEID 811 (863)
++||+-
T Consensus 103 llDEp~ 108 (261)
T 2eyu_A 103 FVGEMR 108 (261)
T ss_dssp EESCCC
T ss_pred EeCCCC
Confidence 999984
No 275
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.92 E-value=0.0074 Score=60.74 Aligned_cols=23 Identities=39% Similarity=0.696 Sum_probs=21.2
Q ss_pred eEEEECCCCCChHHHHHHHHHHh
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el 766 (863)
.+.|.||+|+|||++++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 276
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.91 E-value=0.0041 Score=63.19 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=27.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
..|+|.||||+|||++++.+|..++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 569999999999999999999999976654
No 277
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=95.90 E-value=0.024 Score=56.24 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=20.6
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+++++.+|+|+|||.++..++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999988777654
No 278
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.90 E-value=0.0041 Score=62.90 Aligned_cols=30 Identities=20% Similarity=0.421 Sum_probs=27.4
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
.++|.||||+|||++|+.++..++.+++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999999888765
No 279
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.89 E-value=0.0045 Score=63.56 Aligned_cols=27 Identities=19% Similarity=0.065 Sum_probs=24.0
Q ss_pred ccceeecceeEeeecccccccCcCCCcccccccccccc
Q psy11009 70 LPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM 107 (863)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (863)
+|+ +.+.|+| |.||||||++|.++++.
T Consensus 55 iPk--kn~ili~---------GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 55 TPK--KNCLVFC---------GPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CTT--CSEEEEE---------SCGGGCHHHHHHHHHHH
T ss_pred CCc--ccEEEEE---------CCCCCCHHHHHHHHHHH
Confidence 777 5678999 99999999999999885
No 280
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.89 E-value=0.0065 Score=59.57 Aligned_cols=31 Identities=26% Similarity=0.139 Sum_probs=27.9
Q ss_pred eEEEECCCCCChHHHHHHHHHHh---CCcEEEEe
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATEC---GTTFFNVC 774 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el---~~~~i~vs 774 (863)
-++|.|+||+|||++++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 47899999999999999999998 88888765
No 281
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.89 E-value=0.0063 Score=60.93 Aligned_cols=39 Identities=21% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccc
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTL 778 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l 778 (863)
.++.-+.|.||+|||||+++++++..+ |...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 345678899999999999999999998 655456665544
No 282
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.87 E-value=0.0055 Score=60.57 Aligned_cols=29 Identities=21% Similarity=0.542 Sum_probs=26.2
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
.++|.|+||||||++++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999987664
No 283
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.86 E-value=0.071 Score=61.21 Aligned_cols=36 Identities=11% Similarity=0.063 Sum_probs=28.7
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCcEEEEec
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC----GTTFFNVCS 775 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el----~~~~i~vs~ 775 (863)
.+..-++|.|+||+|||++|..+|..+ +.++++++.
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 444578999999999999999998765 456777765
No 284
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.85 E-value=0.0035 Score=69.39 Aligned_cols=53 Identities=15% Similarity=0.211 Sum_probs=37.4
Q ss_pred cchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 712 AELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 712 iGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
+..+.+.+.+...+...+. .+ ...+++|.||||+|||++++++|..++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~-------~g-~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIE-------DN-YRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTT-------TC-SCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc-------cC-CeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 3455666666655532111 11 22479999999999999999999999988855
No 285
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.81 E-value=0.023 Score=55.90 Aligned_cols=38 Identities=26% Similarity=0.222 Sum_probs=29.4
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTL 778 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l 778 (863)
++.-++|.|+||+|||++++.++..+ +..+..++...+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 44578999999999999999999987 445555655443
No 286
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.81 E-value=0.007 Score=61.26 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
..+.|.||+|||||++++.+++.++++++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 368899999999999999999999987765
No 287
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.76 E-value=0.0039 Score=60.99 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=27.0
Q ss_pred eEEEECCCCCChHHHHHHHHHHhC---CcEEEEeccc
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECG---TTFFNVCSST 777 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~---~~~i~vs~s~ 777 (863)
-|+|.|+||||||++++.+++.++ .++..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 588999999999999999999886 3355555444
No 288
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.73 E-value=0.007 Score=61.89 Aligned_cols=30 Identities=23% Similarity=0.471 Sum_probs=26.7
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
-++|.||||+|||++++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999999877654
No 289
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=95.70 E-value=0.003 Score=70.08 Aligned_cols=108 Identities=16% Similarity=0.142 Sum_probs=59.8
Q ss_pred EEEEEecccccccccccchhHhHHHHHHHHhh-c----cCCC---CCCeEEEEccCCC-------CCccHHHhhccce-E
Q psy11009 164 TLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYR-L----LTFP---STPVQYSIQKGIP-------WDIDEALRRRLEK-R 227 (863)
Q Consensus 164 ~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld-~----~~~~---~~~VivIaATN~p-------~~LD~AllRRFD~-~ 227 (863)
..|||||++.+- ..+...||..|+ + ..+. .-+|-+|+|||+. ..+.+.|..|+.. .
T Consensus 224 gtlfldei~~l~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~ 295 (368)
T 3dzd_A 224 GTLFLDEVGELD--------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQ 295 (368)
T ss_dssp SEEEEETGGGSC--------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEE
T ss_pred CeEEecChhhCC--------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeE
Confidence 389999999884 344556666663 1 1111 1246799999963 2334455556654 3
Q ss_pred EEecCCCH--HHHHHHHHHHhccC----CCC-CcccHH---HHhhhCCCCCH--HHHHHHHHHHHH
Q psy11009 228 IYIPLPSK--AGREALLKINLKEV----KVD-PAVDLT---HIASQLDGYSG--ADITNVCRDASM 281 (863)
Q Consensus 228 I~i~lPd~--~~R~~IL~~~l~~~----~l~-~dvdl~---~LA~~TeG~SG--ADI~~lv~~Aal 281 (863)
|++|+-.. +....++++++.+. ... ..++-+ .|.... |.| .+|++++..|+.
T Consensus 296 i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~--wpGNvreL~n~i~~~~~ 359 (368)
T 3dzd_A 296 IYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQE--WKGNVRELKNLIERAVI 359 (368)
T ss_dssp EECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCC--CTTHHHHHHHHHHHHHH
T ss_pred EeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCC--CCcHHHHHHHHHHHHHH
Confidence 55543322 44556666666432 211 234433 344433 444 788888887754
No 290
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=95.69 E-value=0.043 Score=58.16 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=27.1
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCcEEEEe
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC----GTTFFNVC 774 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el----~~~~i~vs 774 (863)
.+..-++|.||||+|||+|++.+|..+ |.+++.++
T Consensus 33 ~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 33 RGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 344578899999999999999998775 44565554
No 291
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.69 E-value=0.013 Score=60.86 Aligned_cols=33 Identities=24% Similarity=0.283 Sum_probs=26.6
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCcEEEEec
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCS 775 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~ 775 (863)
-++++.|+||||||+++-.+|..+ |..++.+..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 379999999999999999998776 666654444
No 292
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.65 E-value=0.0089 Score=58.89 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=26.7
Q ss_pred EEEECCCCCChHHHHHHHHHHh---CCcEEEEec
Q psy11009 745 VLMVGPPGTGKTMLAKAVATEC---GTTFFNVCS 775 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el---~~~~i~vs~ 775 (863)
|.|.|++|||||++++.++..+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999999 998876543
No 293
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.63 E-value=0.0055 Score=61.16 Aligned_cols=30 Identities=20% Similarity=0.332 Sum_probs=26.6
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.+.|.|++|||||++++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 898877654
No 294
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.60 E-value=0.008 Score=59.64 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=28.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh-CCcEEEEe
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC-GTTFFNVC 774 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el-~~~~i~vs 774 (863)
+.-|+|.|+||+|||++++.++..+ |.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 3568999999999999999999998 57777665
No 295
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.54 E-value=0.0028 Score=68.62 Aligned_cols=24 Identities=13% Similarity=0.080 Sum_probs=21.0
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccc
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM 107 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (863)
..++++| |.||||||++|.++++.
T Consensus 152 ~~~lll~---------G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 152 QKGLYLY---------GDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp CCEEEEE---------CSTTSSHHHHHHHHHHH
T ss_pred CceEEEE---------CCCCCCHHHHHHHHHHH
Confidence 4678888 99999999999999874
No 296
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.51 E-value=0.021 Score=57.56 Aligned_cols=38 Identities=13% Similarity=0.205 Sum_probs=30.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC----CcEEEEecccc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG----TTFFNVCSSTL 778 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~----~~~i~vs~s~l 778 (863)
++.-++|.|+||+|||++++.++..++ .+++.++...+
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 345788999999999999999998764 56777765444
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.51 E-value=0.014 Score=64.95 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=43.4
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC----CcEEEEecc-ccc--c--ccc-----chhHHHHHHHHHHHHhCCCeEEE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG----TTFFNVCSS-TLT--S--KYR-----GESEKLVRLLFEMARFYAPSTIF 806 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~----~~~i~vs~s-~l~--~--~~~-----Ge~e~~ir~lf~~A~~~~p~ILf 806 (863)
+...++|.||+|+|||+++++++..+. ..++.+... ++. . .++ |.....+......+-...|.+|+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~~pd~il 214 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIF 214 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCSHHHHHHHTTSCCSEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeeecCCCHHHHHHHHHHHhhhCcCEEE
Confidence 445789999999999999999998762 333333211 110 0 001 11111234455555567899999
Q ss_pred EcCCC
Q psy11009 807 IDEID 811 (863)
Q Consensus 807 IDEID 811 (863)
+||+-
T Consensus 215 ldE~~ 219 (372)
T 2ewv_A 215 VGEMR 219 (372)
T ss_dssp ESCCC
T ss_pred ECCCC
Confidence 99994
No 298
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.48 E-value=0.01 Score=62.52 Aligned_cols=33 Identities=36% Similarity=0.565 Sum_probs=29.4
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
...+.|.|++|||||++++.+|..++.+++..+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 357999999999999999999999999887653
No 299
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.47 E-value=0.26 Score=55.91 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=28.9
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEec
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCS 775 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~ 775 (863)
.+..-+++.|+||+|||++|..+|... |.+++.++.
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 455578999999999999999887665 667777764
No 300
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.47 E-value=0.01 Score=59.03 Aligned_cols=31 Identities=29% Similarity=0.502 Sum_probs=27.8
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
-+.|.|++|+|||++++.+|..+|.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 6889999999999999999999998887643
No 301
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.47 E-value=0.033 Score=54.48 Aligned_cols=20 Identities=35% Similarity=0.659 Sum_probs=17.5
Q ss_pred CceEEEECCCCCChHHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAKA 761 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAra 761 (863)
+.-+.|.||+|+|||+++++
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34688999999999999994
No 302
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.41 E-value=0.015 Score=57.85 Aligned_cols=30 Identities=17% Similarity=0.143 Sum_probs=25.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCc--EEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTT--FFN 772 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~--~i~ 772 (863)
.-|+|.|+||+|||++++.++..++.. ++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 468999999999999999999998763 544
No 303
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=95.40 E-value=0.067 Score=57.95 Aligned_cols=75 Identities=15% Similarity=0.160 Sum_probs=47.9
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CC-cE--EEEecccccccccchhHHHHHHHHHHHH----hCCCeEEEEcCCC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---GT-TF--FNVCSSTLTSKYRGESEKLVRLLFEMAR----FYAPSTIFIDEID 811 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~~-~~--i~vs~s~l~~~~~Ge~e~~ir~lf~~A~----~~~p~ILfIDEID 811 (863)
...+||+||+|+||+..++.+++.+ +. ++ +.++.. ..++.+.+.+. .....|++|||++
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPN-----------TDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTT-----------CCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCC-----------CCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 3589999999999999999998875 32 22 222210 11233333332 3457799999998
Q ss_pred c-ccccCCCCchhhHHHHHHHHHHHHHhc
Q psy11009 812 S-LCSRRGSESEHEASRRVKSELLVQMDG 839 (863)
Q Consensus 812 ~-l~~~R~~~~~~e~~~rv~~~LL~~lD~ 839 (863)
. +.. ...+.|+..++.
T Consensus 87 ~kl~~------------~~~~aLl~~le~ 103 (343)
T 1jr3_D 87 NGPNA------------AINEQLLTLTGL 103 (343)
T ss_dssp SCCCT------------THHHHHHHHHTT
T ss_pred CCCCh------------HHHHHHHHHHhc
Confidence 8 632 145667777753
No 304
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.36 E-value=0.0092 Score=59.68 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=25.5
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
.+.|.||+|||||++++.++. +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 578999999999999999998 88887653
No 305
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.32 E-value=0.013 Score=61.14 Aligned_cols=30 Identities=30% Similarity=0.599 Sum_probs=27.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
..+.|.||||||||++++.+|..++.+++.
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 478999999999999999999999987754
No 306
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.29 E-value=0.062 Score=53.13 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.1
Q ss_pred ceEEEECCCCCChHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKA 761 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAra 761 (863)
+.+++.+|+|+|||..+-.
T Consensus 39 ~~~li~~~TGsGKT~~~~~ 57 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFAL 57 (207)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999987443
No 307
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.20 E-value=0.01 Score=58.67 Aligned_cols=32 Identities=19% Similarity=0.212 Sum_probs=27.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
+..|.|.|++|||||++++.++.. |.+++..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 457899999999999999999998 88877543
No 308
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.16 E-value=0.0057 Score=61.11 Aligned_cols=28 Identities=18% Similarity=0.150 Sum_probs=24.3
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTT 769 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~ 769 (863)
+.-|+|.|+||||||++++.+++.++.+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3578999999999999999999987543
No 309
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.12 E-value=0.02 Score=64.40 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=27.7
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
..+.-|+|+|+||+|||++|+.++..++..++.
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 344678899999999999999999998876554
No 310
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.11 E-value=0.012 Score=59.32 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=28.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
.-+.|+|++|||||++++.++..+|.+++..+
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 36789999999999999999999998887643
No 311
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.08 E-value=0.01 Score=65.16 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.4
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
.+-++|.||+|+|||+|+..||+.++..++..+.-
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 35789999999999999999999999888776554
No 312
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.06 E-value=0.018 Score=60.09 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=27.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
+...+.|.||+|||||++++.+|+.+|..++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34578899999999999999999999987653
No 313
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.04 E-value=0.034 Score=76.23 Aligned_cols=64 Identities=25% Similarity=0.279 Sum_probs=49.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEecccccccccchhHHHHHHHHHHHHhCCCeEEEEcCCCcc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSL 813 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~l~~~~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~l 813 (863)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-.+- ..+..+|.-+- ..++..+|||++.+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~------~~~g~i~~G~~-~~GaW~cfDEfNrl 668 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL------QAMSRIFVGLC-QCGAWGCFDEFNRL 668 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH------HHHHHHHHHHH-HHTCEEEEETTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH------HHHHHHHhhHh-hcCcEEEehhhhcC
Confidence 367899999999999999999999999999999875432 23344454333 24678999999887
No 314
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=94.99 E-value=0.12 Score=52.80 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.4
Q ss_pred ceEEEECCCCCChHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVA 763 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA 763 (863)
+.+++.||+|||||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 579999999999998666553
No 315
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.97 E-value=0.0072 Score=60.40 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=23.2
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
+.-|+|.|+||||||++++.++..++
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999864
No 316
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.92 E-value=0.036 Score=65.54 Aligned_cols=24 Identities=29% Similarity=0.440 Sum_probs=20.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 579999999999999888776554
No 317
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.91 E-value=0.022 Score=58.56 Aligned_cols=33 Identities=27% Similarity=0.523 Sum_probs=28.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
++..+.|.|++|||||++++.+|..+|.+++..
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 345789999999999999999999999887653
No 318
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.90 E-value=0.13 Score=58.39 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=28.3
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSS 776 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s 776 (863)
++.++|+|+||+|||+++..+|..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4679999999999999999998876 4566666554
No 319
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=94.89 E-value=0.074 Score=61.57 Aligned_cols=77 Identities=16% Similarity=0.232 Sum_probs=54.8
Q ss_pred CCcE-EEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC--CccHHHhhccceEEEecCCCHHH
Q psy11009 161 PGPT-LAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW--DIDEALRRRLEKRIYIPLPSKAG 237 (863)
Q Consensus 161 ~~P~-IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~--~LD~AllRRFD~~I~i~lPd~~~ 237 (863)
.-|- ||+|||+..++..- .+. ...++..|-... ...+|-+|.||.+|. .|+..++.-|..+|.+...+..+
T Consensus 295 ~lP~ivlvIDE~~~ll~~~----~~~-~~~~l~~Lar~g-Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~d 368 (512)
T 2ius_A 295 KEPYIVVLVDEFADLMMTV----GKK-VEELIARLAQKA-RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKID 368 (512)
T ss_dssp CCCEEEEEEETHHHHHHHH----HHH-HHHHHHHHHHHC-GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHH
T ss_pred cCCcEEEEEeCHHHHHhhh----hHH-HHHHHHHHHHHh-hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHH
Confidence 4575 89999998876421 112 223334442222 122688999999997 69998888999999999999999
Q ss_pred HHHHHH
Q psy11009 238 REALLK 243 (863)
Q Consensus 238 R~~IL~ 243 (863)
...|+.
T Consensus 369 sr~ilg 374 (512)
T 2ius_A 369 SRTILD 374 (512)
T ss_dssp HHHHHS
T ss_pred HHHhcC
Confidence 988875
No 320
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.83 E-value=0.014 Score=63.72 Aligned_cols=70 Identities=17% Similarity=0.209 Sum_probs=45.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC--CcEEEEeccc-cc-----cc--ccchhHHHHHHHHHHHHhCCCeEEEEcCCCc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSST-LT-----SK--YRGESEKLVRLLFEMARFYAPSTIFIDEIDS 812 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~--~~~i~vs~s~-l~-----~~--~~Ge~e~~ir~lf~~A~~~~p~ILfIDEID~ 812 (863)
..+++.||+|+|||+++++++..+. ...+.+.... +. .. +........+..+..+-...|.+|++||+-.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 5799999999999999999998863 2344444321 11 00 1200112335566667678899999999854
No 321
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=94.82 E-value=0.079 Score=62.01 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=55.4
Q ss_pred cEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC--CccHHHhhccceEEEecCCCHHHHHH
Q psy11009 163 PTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW--DIDEALRRRLEKRIYIPLPSKAGREA 240 (863)
Q Consensus 163 P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~--~LD~AllRRFD~~I~i~lPd~~~R~~ 240 (863)
+.||+|||+..++..-. +.+ ...+..|-... ...+|.+|.||-+|. .|+..++--|..+|.+...+..+...
T Consensus 344 ~ivvVIDE~~~L~~~~~----~~~-~~~L~~Iar~G-Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ 417 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG----KKV-EELIARIAQKA-RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRT 417 (574)
T ss_dssp EEEEEESCCTTHHHHTC----HHH-HHHHHHHHHHC-TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHH
T ss_pred cEEEEEeCHHHHhhhhh----HHH-HHHHHHHHHHH-hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHH
Confidence 37899999999875321 222 23344442222 234899999999998 89999888999999999999888888
Q ss_pred HHH
Q psy11009 241 LLK 243 (863)
Q Consensus 241 IL~ 243 (863)
||.
T Consensus 418 ILd 420 (574)
T 2iut_A 418 ILD 420 (574)
T ss_dssp HHS
T ss_pred hcC
Confidence 874
No 322
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.75 E-value=0.027 Score=58.50 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=30.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCc--------EEEEeccccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTT--------FFNVCSSTLT 779 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~--------~i~vs~s~l~ 779 (863)
.-|.|.|+||||||++|+.++..++.+ +..++..++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 568899999999999999999999976 3356665554
No 323
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.71 E-value=0.023 Score=57.28 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=27.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
..+.|.|++|||||++++.++..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3689999999999999999999999888764
No 324
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.71 E-value=0.017 Score=57.93 Aligned_cols=27 Identities=33% Similarity=0.501 Sum_probs=23.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
+++-++|.||||+|||++++.++..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 446799999999999999999999874
No 325
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.70 E-value=0.022 Score=61.94 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=30.2
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
++-++|.||+|+|||+||..+|+.++..++..+.-
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence 35688999999999999999999999888776553
No 326
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.68 E-value=0.024 Score=57.18 Aligned_cols=30 Identities=30% Similarity=0.422 Sum_probs=26.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
.-|.|.|++|||||++++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4688999999999999999998 88887765
No 327
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=94.65 E-value=0.15 Score=51.14 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=19.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+.+++.+|+|+|||..+-..+-..
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~~ 75 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQQ 75 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHHh
Confidence 579999999999998776655444
No 328
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.64 E-value=0.021 Score=56.24 Aligned_cols=32 Identities=22% Similarity=0.395 Sum_probs=24.6
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
-++|.||+|+|||++++.++...+.. +.++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~-~~i~~d 35 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNS-AYIEGD 35 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSE-EEEEHH
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCe-EEEccc
Confidence 57899999999999999999866542 334443
No 329
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.60 E-value=0.11 Score=60.41 Aligned_cols=44 Identities=11% Similarity=-0.009 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHH
Q psy11009 712 AELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 712 iGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~ 764 (863)
+|.+..+++|.+++.. ......+-+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~---------~~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDE---------MCDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHH---------HTTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhc---------ccCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4999999999887731 1122346788999999999999999997
No 330
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.46 E-value=0.06 Score=63.82 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=32.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTL 778 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l 778 (863)
.+.-|+|.|+||+|||++|++++..+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 34578999999999999999999999 999998875443
No 331
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.46 E-value=0.13 Score=59.60 Aligned_cols=36 Identities=22% Similarity=0.179 Sum_probs=26.1
Q ss_pred CCceEEEECCCCCChHHHHHH--HHHHh--CCcEEEEecc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKA--VATEC--GTTFFNVCSS 776 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAra--IA~el--~~~~i~vs~s 776 (863)
+...++|.||+|||||+|++. ++... +..-++++..
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 446799999999999999999 44443 4445555543
No 332
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.45 E-value=0.022 Score=60.33 Aligned_cols=31 Identities=32% Similarity=0.475 Sum_probs=25.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh-CCcEEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC-GTTFFNV 773 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el-~~~~i~v 773 (863)
.-++|.|+||+|||++|+.++..+ +..++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~ 34 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEECH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEecc
Confidence 468999999999999999999974 6555533
No 333
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.42 E-value=0.016 Score=57.98 Aligned_cols=33 Identities=21% Similarity=0.164 Sum_probs=26.9
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh-CCcEEEEe
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC-GTTFFNVC 774 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el-~~~~i~vs 774 (863)
..-+.|.||||+|||++++.++..+ ++.++..+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D 54 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQD 54 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCC
Confidence 3467899999999999999999987 66665543
No 334
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.41 E-value=0.19 Score=54.66 Aligned_cols=90 Identities=16% Similarity=0.009 Sum_probs=47.8
Q ss_pred cCCCChHHHHHHHhhhhhcCCCCccccccchHHHHHHHHHHhhcCCCChhhhhcc---CCCCceEEEECCCCCChHHHHH
Q psy11009 684 SYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGI---RRPWKGVLMVGPPGTGKTMLAK 760 (863)
Q Consensus 684 ~~g~d~~~~e~~~~~~~~k~p~~~~~dLiGl~~vk~~L~e~V~~pl~~pe~~~~~---~~p~kgvLL~GPPGtGKT~LAr 760 (863)
..++..+.++.+-..+.++.......+- -..-+++.|.+.+. +.........+ ..+++-+++.||+|+|||+++.
T Consensus 46 ~~dv~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~-~~~~~~~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~ 123 (320)
T 1zu4_A 46 QTDMGMKMVLKVSNLVRKKTKRDTSFEN-IKDALVESLYQAYT-DNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLA 123 (320)
T ss_dssp HTTCCHHHHHHHHHHHHHHCCTTCCHHH-HHHHHHHHHHHHHH-CSCC----CCCCCCTTSCEEEEEESSTTSSHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhhchhHHH-HHHHHHHHHHHHhC-cccccccccCccccCCCCeEEEEECCCCCCHHHHHH
Confidence 4456666666655555444433222211 12233444444442 11100000111 2345678999999999999999
Q ss_pred HHHHHh---CCcEEEEec
Q psy11009 761 AVATEC---GTTFFNVCS 775 (863)
Q Consensus 761 aIA~el---~~~~i~vs~ 775 (863)
.+|..+ +..+..+++
T Consensus 124 ~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 124 KMANYYAELGYKVLIAAA 141 (320)
T ss_dssp HHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHCCCeEEEEeC
Confidence 998776 555555544
No 335
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.40 E-value=0.082 Score=52.87 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=28.3
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSS 776 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s 776 (863)
++.-+.|.||+|+|||++++.++..+ +.+++.++..
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccC
Confidence 34568899999999999999999876 6666655433
No 336
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.40 E-value=0.041 Score=55.35 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=23.7
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
++.-+.|.||+|+|||||+++|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445788999999999999999999875
No 337
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.39 E-value=0.024 Score=60.32 Aligned_cols=31 Identities=19% Similarity=0.334 Sum_probs=26.9
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
+.-|.|.|+||||||++|+.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3578999999999999999999 689887665
No 338
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.35 E-value=0.13 Score=62.43 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=18.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e 765 (863)
..+++.||+|+|||+++..+...
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999976666544
No 339
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=94.34 E-value=0.014 Score=62.02 Aligned_cols=24 Identities=13% Similarity=-0.027 Sum_probs=22.0
Q ss_pred ecceeEeeecccccccCcCCCcccccccccccc
Q psy11009 75 RIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM 107 (863)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (863)
+.|+|+| |+||||||++|+++++.
T Consensus 104 ~n~~~l~---------GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 104 RNTIWLF---------GPATTGKTNIAEAIAHT 127 (267)
T ss_dssp CCEEEEE---------CSTTSSHHHHHHHHHHH
T ss_pred CcEEEEE---------CCCCCCHHHHHHHHHhh
Confidence 5689999 99999999999999984
No 340
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=94.29 E-value=0.026 Score=57.07 Aligned_cols=29 Identities=17% Similarity=0.304 Sum_probs=27.1
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
-|.|.||+|||||++++.+|+.+|++|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999874
No 341
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=94.27 E-value=0.21 Score=50.06 Aligned_cols=23 Identities=35% Similarity=0.299 Sum_probs=17.4
Q ss_pred ceEEEECCCCCChHHHH-HHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLA-KAVATE 765 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LA-raIA~e 765 (863)
+.+++.+|+|+|||..+ -.+...
T Consensus 52 ~~~lv~~pTGsGKT~~~~~~~l~~ 75 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGTFSIAALQR 75 (224)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHHHHH
Confidence 57999999999999873 333333
No 342
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.27 E-value=0.059 Score=54.69 Aligned_cols=69 Identities=20% Similarity=0.155 Sum_probs=41.8
Q ss_pred CceEEEECCCCCChH-HHHHHHHHHh--CCcEEEEecccccccccchhHH------------HHHHHHHHHHhCCCeEEE
Q psy11009 742 WKGVLMVGPPGTGKT-MLAKAVATEC--GTTFFNVCSSTLTSKYRGESEK------------LVRLLFEMARFYAPSTIF 806 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT-~LAraIA~el--~~~~i~vs~s~l~~~~~Ge~e~------------~ir~lf~~A~~~~p~ILf 806 (863)
.+=.+++||.|+||| +|.+++.+.. +..++.+.+. +...+..+... ....+++.. ....+|+
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~-~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~--~~~DvIl 96 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA-KDTRYSSSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIG 96 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET-TCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH--HTCSEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc-cCccchhhhhhccCCcccceecCCHHHHHHhc--cCCCEEE
Confidence 345678999999999 8999987654 6777777643 11111100000 011222322 2367999
Q ss_pred EcCCCcc
Q psy11009 807 IDEIDSL 813 (863)
Q Consensus 807 IDEID~l 813 (863)
|||+.-+
T Consensus 97 IDEaQFf 103 (195)
T 1w4r_A 97 IDEGQFF 103 (195)
T ss_dssp ESSGGGC
T ss_pred EEchhhh
Confidence 9999877
No 343
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.26 E-value=0.028 Score=55.73 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+.-+.|.||+|+|||++++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568899999999999999999876
No 344
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.24 E-value=0.025 Score=62.19 Aligned_cols=33 Identities=30% Similarity=0.373 Sum_probs=28.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEec
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~ 775 (863)
+-|+|.||+|+|||++|+.+|..++..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds 40 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDS 40 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceecccc
Confidence 468899999999999999999999977766554
No 345
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.23 E-value=0.028 Score=55.33 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=22.8
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
.+-+.|.||+|+|||+|+++++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35689999999999999999998763
No 346
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=94.17 E-value=0.034 Score=55.90 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=21.6
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
|.|+|+||+|+|||+|++.+..+.
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 459999999999999999998775
No 347
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.13 E-value=0.032 Score=55.25 Aligned_cols=24 Identities=29% Similarity=0.516 Sum_probs=21.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.-+.|.||+|+|||+++++++...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 468899999999999999999875
No 348
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.13 E-value=0.03 Score=61.01 Aligned_cols=34 Identities=29% Similarity=0.283 Sum_probs=28.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
+-+++.||+|+|||+||..+|..++..++..+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4578999999999999999999998877766543
No 349
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.12 E-value=0.41 Score=55.19 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=43.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccc-------c--------ccc-----hhHHHHHHHHHHH
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTS-------K--------YRG-----ESEKLVRLLFEMA 797 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~-------~--------~~G-----e~e~~ir~lf~~A 797 (863)
++.-++|.||+|+|||++++.||..+ +..+.......+.. . ++. .....+......+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~a 371 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQAA 371 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHHH
Confidence 44578899999999999999999876 33443332222110 0 110 1122334444445
Q ss_pred HhCCCeEEEEcCCCcc
Q psy11009 798 RFYAPSTIFIDEIDSL 813 (863)
Q Consensus 798 ~~~~p~ILfIDEID~l 813 (863)
......+++||-+..+
T Consensus 372 ~~~~~DvVLIDTaGrl 387 (503)
T 2yhs_A 372 KARNIDVLIADTAGRL 387 (503)
T ss_dssp HHTTCSEEEECCCCSC
T ss_pred HhcCCCEEEEeCCCcc
Confidence 4455679999987655
No 350
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.10 E-value=0.027 Score=56.86 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=23.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
++.-+.|.||+|+|||++++.++..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345688999999999999999998874
No 351
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.06 E-value=0.17 Score=55.52 Aligned_cols=36 Identities=17% Similarity=0.094 Sum_probs=28.6
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEec
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCS 775 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~ 775 (863)
.+..-++|.|+||+|||++|..+|..+ +.++.+++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 454568999999999999999998764 667766654
No 352
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.05 E-value=0.13 Score=58.06 Aligned_cols=71 Identities=18% Similarity=0.244 Sum_probs=40.7
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCC---cEEEEec-cccc-c----cccc-hhHHHHHHHHHHHHhCCCeEEEEcCC
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGT---TFFNVCS-STLT-S----KYRG-ESEKLVRLLFEMARFYAPSTIFIDEI 810 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~---~~i~vs~-s~l~-~----~~~G-e~e~~ir~lf~~A~~~~p~ILfIDEI 810 (863)
+..-+++.||+|+|||++.++++..+.. .++.+.- .++. . ..+. ............+-...|.++++.||
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEi 245 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEI 245 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCc
Confidence 3346889999999999999999998742 3333321 1111 0 0011 00011222333444567999999996
Q ss_pred C
Q psy11009 811 D 811 (863)
Q Consensus 811 D 811 (863)
.
T Consensus 246 R 246 (418)
T 1p9r_A 246 R 246 (418)
T ss_dssp C
T ss_pred C
Confidence 4
No 353
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.02 E-value=0.083 Score=61.27 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=27.6
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC---CcEEEEeccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECG---TTFFNVCSST 777 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~---~~~i~vs~s~ 777 (863)
.-|+|.|.||+|||++|+.+|..++ .....++..+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~ 73 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGE 73 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccH
Confidence 4689999999999999999999984 4444455444
No 354
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.00 E-value=0.027 Score=57.51 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=27.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcEEEEec
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~ 775 (863)
..++++|.||+|+|||+||..++...+ .++..+.
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 347899999999999999999998875 5555443
No 355
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=93.88 E-value=0.19 Score=53.72 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=23.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh-----CCcEEEEec
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC-----GTTFFNVCS 775 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el-----~~~~i~vs~ 775 (863)
+++++.+|+|+|||..+-..+... +...+.+.+
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P 82 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTP 82 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECS
T ss_pred CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcC
Confidence 589999999999999876655443 444555544
No 356
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.85 E-value=0.035 Score=55.54 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=26.0
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC--CcEEE
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECG--TTFFN 772 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~--~~~i~ 772 (863)
+.-+.|.||+|+||||+++.++..++ +.++.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 34688999999999999999999987 55544
No 357
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=93.79 E-value=0.2 Score=50.78 Aligned_cols=18 Identities=39% Similarity=0.462 Sum_probs=15.6
Q ss_pred ceEEEECCCCCChHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAK 760 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAr 760 (863)
+.+++.+|+|+|||..+-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 579999999999998644
No 358
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=93.77 E-value=0.17 Score=63.17 Aligned_cols=44 Identities=32% Similarity=0.355 Sum_probs=33.9
Q ss_pred ccchHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHH
Q psy11009 711 IAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 711 LiGl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~e 765 (863)
.+|.+...+.|.+.+.. . ...+-+.++||+|+|||+||+.++..
T Consensus 130 ~VGRe~eLeeL~elL~~----------~-d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLE----------L-RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHH----------C-CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhc----------c-CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 38888888888887631 0 12357889999999999999999853
No 359
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=93.67 E-value=0.16 Score=62.85 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~e 765 (863)
..-++|.||.|+|||++.+.++..
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 356899999999999999998743
No 360
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.63 E-value=0.039 Score=62.00 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=28.9
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcEEEEec
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~ 775 (863)
.+-++|.||+|+|||+||..+|..++..++..+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 3468899999999999999999999887766543
No 361
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=93.58 E-value=0.17 Score=51.15 Aligned_cols=19 Identities=32% Similarity=0.441 Sum_probs=16.0
Q ss_pred ceEEEECCCCCChHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKA 761 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAra 761 (863)
+.+++.+|+|+|||..+-.
T Consensus 58 ~~~l~~apTGsGKT~~~~l 76 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYLM 76 (228)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 5799999999999986543
No 362
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.54 E-value=0.18 Score=58.19 Aligned_cols=93 Identities=18% Similarity=0.189 Sum_probs=54.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccc----------------------cc----cc--hhHHH
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTS----------------------KY----RG--ESEKL 789 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~----------------------~~----~G--e~e~~ 789 (863)
+..-++|.||||+|||+|++.++... |..++++...+-.. .+ .. .....
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~ 359 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDH 359 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHH
Confidence 44578999999999999999998765 44555554322100 00 00 11334
Q ss_pred HHHHHHHHHhCCCeEEEEcCCCcccccCCCCchhhHHHHHHHHHHHHH
Q psy11009 790 VRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQM 837 (863)
Q Consensus 790 ir~lf~~A~~~~p~ILfIDEID~l~~~R~~~~~~e~~~rv~~~LL~~l 837 (863)
.+.+...+....|.+|+||=+..+... .. . ...+..+..|+..+
T Consensus 360 q~~~~a~~l~~~p~llilDp~~~Ld~~--~~-~-~~~~~~i~~ll~~l 403 (525)
T 1tf7_A 360 LQIIKSEINDFKPARIAIDSLSALARG--VS-N-NAFRQFVIGVTGYA 403 (525)
T ss_dssp HHHHHHHHHTTCCSEEEEECHHHHTSS--SC-H-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEcChHHHHhh--CC-h-HHHHHHHHHHHHHH
Confidence 556666777788999999954444322 11 1 12344455555555
No 363
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=93.48 E-value=0.43 Score=55.86 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=27.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh-------CCcEEEEecc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC-------GTTFFNVCSS 776 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el-------~~~~i~vs~s 776 (863)
.++|+.|.+|+|||.+++.+...+ ...|+-+++.
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpK 255 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPK 255 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSS
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCC
Confidence 489999999999999999886654 2457777654
No 364
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=93.43 E-value=0.24 Score=61.28 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.4
Q ss_pred ceEEEECCCCCChHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~ 764 (863)
.-++|.||.|+|||++.|.+|.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999953
No 365
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.41 E-value=0.042 Score=55.08 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=21.9
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.+.+.|.||+|+|||+|++.++...
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568999999999999999998865
No 366
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.38 E-value=0.041 Score=63.73 Aligned_cols=69 Identities=20% Similarity=0.247 Sum_probs=43.6
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC--CcEEEEeccc-cccc---c--------cchhHHHHHHHHHHHHhCCCeEEEEc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSST-LTSK---Y--------RGESEKLVRLLFEMARFYAPSTIFID 808 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~--~~~i~vs~s~-l~~~---~--------~Ge~e~~ir~lf~~A~~~~p~ILfID 808 (863)
.++++.||+|+||||+.++++..+. ...+.+.... +.-. + .+.....+..+...+-...|.+++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~PD~iivg 340 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQRPDYIIVG 340 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGCCSEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccCCCeEEeC
Confidence 5799999999999999999998873 3445543322 2100 0 01111122344445556789999999
Q ss_pred CCC
Q psy11009 809 EID 811 (863)
Q Consensus 809 EID 811 (863)
|+-
T Consensus 341 Eir 343 (511)
T 2oap_1 341 EVR 343 (511)
T ss_dssp CCC
T ss_pred CcC
Confidence 984
No 367
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.38 E-value=0.042 Score=54.28 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=21.4
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+-+.|.||+|+|||+++++++..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999999875
No 368
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=93.37 E-value=0.17 Score=54.16 Aligned_cols=72 Identities=28% Similarity=0.297 Sum_probs=45.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecccccc----------------cc---cc-hhHHHHHHHHHHH
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTS----------------KY---RG-ESEKLVRLLFEMA 797 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~----------------~~---~G-e~e~~ir~lf~~A 797 (863)
+++.+.+.|++|+|||+++..+|..+ +..+..++...... -+ .+ ......+.....+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678889999999999999998776 45555544321100 00 00 1112334555655
Q ss_pred HhCCCeEEEEcCCCc
Q psy11009 798 RFYAPSTIFIDEIDS 812 (863)
Q Consensus 798 ~~~~p~ILfIDEID~ 812 (863)
....+.+|+||+.-.
T Consensus 177 ~~~~~D~viiDtpp~ 191 (295)
T 1ls1_A 177 RLEARDLILVDTAGR 191 (295)
T ss_dssp HHHTCCEEEEECCCC
T ss_pred HhCCCCEEEEeCCCC
Confidence 556789999999843
No 369
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=93.37 E-value=0.23 Score=48.96 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=16.1
Q ss_pred ceEEEECCCCCChHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKA 761 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAra 761 (863)
+++++.+|+|+|||..+-.
T Consensus 41 ~~~lv~apTGsGKT~~~~~ 59 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYLI 59 (206)
T ss_dssp CCEEEECCSSSTTHHHHHH
T ss_pred CCEEEECCCCCchHHHHHH
Confidence 5899999999999976543
No 370
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.35 E-value=0.18 Score=55.10 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=23.7
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999876
No 371
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.13 E-value=0.17 Score=58.40 Aligned_cols=35 Identities=26% Similarity=0.381 Sum_probs=27.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEec
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCS 775 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~ 775 (863)
+++.|+|+|+||+|||+++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45689999999999999999998766 666666665
No 372
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.10 E-value=0.17 Score=59.99 Aligned_cols=49 Identities=24% Similarity=0.346 Sum_probs=30.8
Q ss_pred chHHHHHHHHHHhhcCCCChhhhhccCCCCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEec
Q psy11009 713 ELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCS 775 (863)
Q Consensus 713 Gl~~vk~~L~e~V~~pl~~pe~~~~~~~p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~ 775 (863)
-++++++.+..++. .+ .-.|+.||||||||+++-.+..++ +..++-+..
T Consensus 190 LN~~Q~~AV~~al~------------~~--~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~ 241 (646)
T 4b3f_X 190 LDTSQKEAVLFALS------------QK--ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAP 241 (646)
T ss_dssp CCHHHHHHHHHHHH------------CS--SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCHHHHHHHHHHhc------------CC--CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 36677777776552 01 247899999999998654443333 455554444
No 373
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.08 E-value=0.26 Score=48.74 Aligned_cols=17 Identities=18% Similarity=0.061 Sum_probs=15.7
Q ss_pred CcCCCcccccccccccc
Q psy11009 91 PVVGSGTYLKHKSPIKM 107 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~ 107 (863)
|.+|||||++.+.++.+
T Consensus 7 G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 7 GEPGVGKTTLVKKIVER 23 (178)
T ss_dssp CCTTSSHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 89999999999999885
No 374
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.04 E-value=0.21 Score=56.54 Aligned_cols=73 Identities=19% Similarity=0.245 Sum_probs=47.4
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh----CCcEEEEecccccccc----------------c---c-hhHHHHHHHHH
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC----GTTFFNVCSSTLTSKY----------------R---G-ESEKLVRLLFE 795 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el----~~~~i~vs~s~l~~~~----------------~---G-e~e~~ir~lf~ 795 (863)
.+++.+++.|++|+|||+++-.+|..+ |..+.-+++....... . + .....++..+.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 356789999999999999999888665 6677777665322110 0 0 11223345556
Q ss_pred HHHhCCCeEEEEcCCCc
Q psy11009 796 MARFYAPSTIFIDEIDS 812 (863)
Q Consensus 796 ~A~~~~p~ILfIDEID~ 812 (863)
.++.....++|||-...
T Consensus 178 ~~~~~~~D~VIIDTpG~ 194 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGR 194 (433)
T ss_dssp HHHHTTCSEEEEECCCC
T ss_pred HHHhCCCCEEEEECCCc
Confidence 55545678999997543
No 375
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=93.00 E-value=0.06 Score=55.58 Aligned_cols=30 Identities=23% Similarity=0.428 Sum_probs=27.2
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEE
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFN 772 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~ 772 (863)
.-|.+.|++|||||++++.+|..+|++|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357899999999999999999999999865
No 376
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.96 E-value=0.071 Score=54.14 Aligned_cols=27 Identities=19% Similarity=0.468 Sum_probs=23.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
+++-++|.||+|+|||+|+++++....
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 446789999999999999999998764
No 377
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.88 E-value=0.21 Score=53.74 Aligned_cols=72 Identities=21% Similarity=0.125 Sum_probs=45.7
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccc----------------ccc----hhHHHHHHHHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSK----------------YRG----ESEKLVRLLFEMAR 798 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~----------------~~G----e~e~~ir~lf~~A~ 798 (863)
+.-+++.|++|+|||+++..+|..+ +..+..+++...... +.+ .....+....+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 5678889999999999999998776 566666655321110 000 12223345555555
Q ss_pred hCCCeEEEEcCCCcc
Q psy11009 799 FYAPSTIFIDEIDSL 813 (863)
Q Consensus 799 ~~~p~ILfIDEID~l 813 (863)
.....+||||-...+
T Consensus 178 ~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRH 192 (297)
T ss_dssp HTTCSEEEEECCCSC
T ss_pred hCCCCEEEEeCCCCc
Confidence 456789999986443
No 378
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.80 E-value=0.066 Score=53.77 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||+|+|||+|+++|+..+
T Consensus 19 ~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 19 VGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 33568899999999999999999887
No 379
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.63 E-value=0.088 Score=54.23 Aligned_cols=33 Identities=21% Similarity=0.194 Sum_probs=26.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC--CcEEEE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG--TTFFNV 773 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~--~~~i~v 773 (863)
...-++|.||||+|||++++.++..++ ..++..
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 345688999999999999999999986 455543
No 380
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.62 E-value=0.17 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=23.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
++.-+.|.||+|||||++++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 44678899999999999999999876
No 381
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.62 E-value=0.082 Score=54.97 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=26.9
Q ss_pred eEEEECCCCCChHHHHHHHHHHhCCcEEEE
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECGTTFFNV 773 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~~~~i~v 773 (863)
.+-|.||||+|||++|+.++..++.+++.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 567899999999999999999999888754
No 382
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=92.38 E-value=0.68 Score=49.98 Aligned_cols=23 Identities=26% Similarity=0.281 Sum_probs=18.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e 765 (863)
+++++.+|+|+|||..+-..+-.
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~~~ 68 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLATLQ 68 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999876555443
No 383
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.37 E-value=0.073 Score=54.20 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||+|+|||+|+++++...
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34568899999999999999999876
No 384
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=92.35 E-value=0.45 Score=52.27 Aligned_cols=33 Identities=30% Similarity=0.479 Sum_probs=26.1
Q ss_pred eEEEECCCCCChHHHHHHHHHHh----CCcEEEEecc
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATEC----GTTFFNVCSS 776 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el----~~~~i~vs~s 776 (863)
++|+..|+|+|||..+-+++... +..++.+.+.
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~ 61 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPT 61 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSS
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 79999999999999888876664 5666666554
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.31 E-value=0.032 Score=55.70 Aligned_cols=24 Identities=21% Similarity=0.325 Sum_probs=21.9
Q ss_pred eEEEECCCCCChHHHHHHHHHHhC
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el~ 767 (863)
-|.|.|++|+|||++++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999984
No 386
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.30 E-value=0.32 Score=53.12 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=22.0
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
..-+.|.||||+|||+|.++++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3568899999999999999999765
No 387
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=92.28 E-value=0.1 Score=53.09 Aligned_cols=68 Identities=12% Similarity=-0.010 Sum_probs=38.2
Q ss_pred CCCcEEEEEeccccccccc-ccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCc-----cHHHhhcc-ceEEEecC
Q psy11009 160 PPGPTLAVAKMFSSLAVQK-LLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDI-----DEALRRRL-EKRIYIPL 232 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R-~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~L-----D~AllRRF-D~~I~i~l 232 (863)
...|.+|+|||.-++.... +.....+.+..++..+... ++.||.+|...+.. ++.+.+-+ |+.+.+..
T Consensus 133 ~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~-----g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEM-----GVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHH-----CCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred hhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHC-----CCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 3578999999998876432 2233444455566655322 34555566555443 12234456 88888753
No 388
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=92.16 E-value=0.66 Score=56.56 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.2
Q ss_pred CceEEEECCCCCChHHHHHHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~e 765 (863)
..-++|.||.|+|||++.++++..
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 356889999999999999999865
No 389
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.16 E-value=0.19 Score=53.75 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=23.4
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
++.-+.|.||+|||||++++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345678999999999999999998875
No 390
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.15 E-value=0.21 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
++.-+.|.||+|+||||+++.+|..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 44578899999999999999999876
No 391
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.15 E-value=0.36 Score=52.87 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=22.3
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
...|.|.|+||+|||+++..++..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998876
No 392
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=92.12 E-value=0.42 Score=52.31 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=17.6
Q ss_pred ceEEEECCCCCChHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~ 764 (863)
+.+++.+|+|+|||..+-..+-
T Consensus 75 ~~~lv~a~TGsGKT~~~~~~~~ 96 (410)
T 2j0s_A 75 RDVIAQSQSGTGKTATFSISVL 96 (410)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEECCCCCCchHHHHHHHH
Confidence 5799999999999987654443
No 393
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=92.11 E-value=0.47 Score=51.06 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.9
Q ss_pred CceEEEECCCCCChHHHHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVA 763 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA 763 (863)
.+++++.+|+|+|||..+-..+
T Consensus 44 ~~~~lv~a~TGsGKT~~~~~~~ 65 (395)
T 3pey_A 44 PRNMIAQSQSGTGKTAAFSLTM 65 (395)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHH
Confidence 3689999999999998765443
No 394
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=92.11 E-value=0.37 Score=52.42 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=17.6
Q ss_pred ceEEEECCCCCChHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~ 764 (863)
+++++.+|+|+|||..+-..+-
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~~ 80 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPTL 80 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHHH
Confidence 5799999999999987655443
No 395
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.05 E-value=0.1 Score=50.89 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||+|.++++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 33468899999999999999999987
No 396
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=91.90 E-value=0.42 Score=48.79 Aligned_cols=19 Identities=26% Similarity=0.305 Sum_probs=16.1
Q ss_pred ceEEEECCCCCChHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKA 761 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAra 761 (863)
+.+++.+|+|+|||..+-.
T Consensus 67 ~~~l~~apTGsGKT~~~~l 85 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYLL 85 (242)
T ss_dssp CCEEEEECTTSCHHHHHHH
T ss_pred CCEEEECCCcCHHHHHHHH
Confidence 5799999999999987543
No 397
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=91.84 E-value=0.53 Score=48.58 Aligned_cols=18 Identities=22% Similarity=0.373 Sum_probs=15.7
Q ss_pred ceEEEECCCCCChHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAK 760 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAr 760 (863)
+.+++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 579999999999998644
No 398
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=91.80 E-value=0.5 Score=53.39 Aligned_cols=72 Identities=26% Similarity=0.260 Sum_probs=44.8
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh---CCcEEEEeccccccc----------------cc-c---hhHHHHHHHHHHH
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSSTLTSK----------------YR-G---ESEKLVRLLFEMA 797 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s~l~~~----------------~~-G---e~e~~ir~lf~~A 797 (863)
++..+++.||+|+|||+++..+|..+ +..+.-+++...... +. + ......+..++.+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999876 455555554321100 00 0 1122234555555
Q ss_pred HhCCCeEEEEcCCCc
Q psy11009 798 RFYAPSTIFIDEIDS 812 (863)
Q Consensus 798 ~~~~p~ILfIDEID~ 812 (863)
+.....+++||-...
T Consensus 177 ~~~~~DvVIIDTaG~ 191 (425)
T 2ffh_A 177 RLEARDLILVDTAGR 191 (425)
T ss_dssp HHTTCSEEEEECCCC
T ss_pred HHCCCCEEEEcCCCc
Confidence 545678999996543
No 399
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.71 E-value=0.11 Score=53.32 Aligned_cols=28 Identities=21% Similarity=0.270 Sum_probs=23.6
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
.+..-+.|.||+|+|||+|.++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3445788999999999999999998864
No 400
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=91.64 E-value=0.74 Score=54.88 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=23.2
Q ss_pred CceEEEECCCCCChHHHHHHHH-HH---hCCcEEEEec
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVA-TE---CGTTFFNVCS 775 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA-~e---l~~~~i~vs~ 775 (863)
.+++++.||+|+|||+.+-..+ .. -+...+.+.+
T Consensus 46 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P 83 (715)
T 2va8_A 46 GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTP 83 (715)
T ss_dssp TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECS
T ss_pred CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 4689999999999999874332 22 2445555544
No 401
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.62 E-value=0.16 Score=56.06 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=45.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC--CcEEEEecc-ccc-----cc--ccc-h-------hHHHHHHHHHHHHhCCC
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG--TTFFNVCSS-TLT-----SK--YRG-E-------SEKLVRLLFEMARFYAP 802 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~--~~~i~vs~s-~l~-----~~--~~G-e-------~e~~ir~lf~~A~~~~p 802 (863)
+...++|.||+|+|||+++++++.... ...+.+... ++. .. +.. . ....++.....+....|
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~p 253 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKP 253 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCC
Confidence 345799999999999999999998763 234444321 111 00 111 1 11124555666666789
Q ss_pred eEEEEcCCCc
Q psy11009 803 STIFIDEIDS 812 (863)
Q Consensus 803 ~ILfIDEID~ 812 (863)
..+++||+..
T Consensus 254 d~~l~~e~r~ 263 (361)
T 2gza_A 254 TRILLAELRG 263 (361)
T ss_dssp SEEEESCCCS
T ss_pred CEEEEcCchH
Confidence 9999999853
No 402
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=91.61 E-value=1 Score=50.97 Aligned_cols=34 Identities=18% Similarity=0.354 Sum_probs=25.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh--------CCcEEEEecc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC--------GTTFFNVCSS 776 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el--------~~~~i~vs~s 776 (863)
+++++.+|+|+|||..+-..+.+. +..++.+.+.
T Consensus 20 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 61 (555)
T 3tbk_A 20 KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQ 61 (555)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 579999999999999877666544 5556665544
No 403
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=91.50 E-value=0.13 Score=53.12 Aligned_cols=27 Identities=15% Similarity=0.219 Sum_probs=23.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTT 769 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~ 769 (863)
.-+-|.||+|+||||+++.++..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 457799999999999999999988754
No 404
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=91.50 E-value=0.32 Score=55.36 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=23.4
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
+..|+|.|.||+|||++++.++..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35799999999999999999999874
No 405
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.47 E-value=0.12 Score=56.06 Aligned_cols=30 Identities=30% Similarity=0.546 Sum_probs=25.3
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTF 770 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~ 770 (863)
+...+.|+||+|+|||+|+++|+..+...+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I 154 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLGGSV 154 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcCceE
Confidence 446789999999999999999999884443
No 406
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.40 E-value=0.17 Score=50.26 Aligned_cols=16 Identities=13% Similarity=-0.197 Sum_probs=14.0
Q ss_pred CcCCCccccccccccc
Q psy11009 91 PVVGSGTYLKHKSPIK 106 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~ 106 (863)
|.||+|||++++.++.
T Consensus 27 G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 27 GPYASGKTTLALQTGL 42 (220)
T ss_dssp CSTTSSHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHH
Confidence 7899999999988764
No 407
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=91.33 E-value=0.73 Score=53.29 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=25.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh-------CCcEEEEecc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC-------GTTFFNVCSS 776 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el-------~~~~i~vs~s 776 (863)
.++|+.|++|+|||++++++...+ .+.++-++..
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 489999999999999999987543 2345555543
No 408
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=91.31 E-value=1 Score=54.61 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.6
Q ss_pred ceEEEECCCCCChHHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e 765 (863)
.-++|.||.|+|||++.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 56889999999999999999865
No 409
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=91.28 E-value=0.091 Score=56.22 Aligned_cols=36 Identities=8% Similarity=0.187 Sum_probs=24.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC---CcEEEEecccc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECG---TTFFNVCSSTL 778 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~---~~~i~vs~s~l 778 (863)
.-|.|.||+|+|||++|+.++..++ ..+..++..++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~ 44 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 44 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchh
Confidence 3588999999999999999999876 33444444433
No 410
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=91.19 E-value=0.13 Score=60.44 Aligned_cols=38 Identities=16% Similarity=0.205 Sum_probs=31.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhC----CcEEEEecccc
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECG----TTFFNVCSSTL 778 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~----~~~i~vs~s~l 778 (863)
.+.-|+|.|+||+|||++|++++..++ .+++.++...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 345789999999999999999999986 77888876554
No 411
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=91.14 E-value=0.083 Score=53.82 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=16.0
Q ss_pred CceEEEECCCCCChHHHHHHHH-HHh
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVA-TEC 766 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA-~el 766 (863)
..-+.|.||+|+|||++++.++ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3568899999999999999999 765
No 412
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.10 E-value=0.16 Score=57.08 Aligned_cols=34 Identities=35% Similarity=0.375 Sum_probs=28.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEecc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSS 776 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~s 776 (863)
+.+|+.+|+|+|||.++-.++..++...+.+.+.
T Consensus 109 ~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 109 KRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp TEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 3699999999999999988888887777777655
No 413
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=91.08 E-value=0.14 Score=58.63 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=20.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
..++|+||+|+|||+|+..++...
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhh
Confidence 468999999999999999887664
No 414
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.07 E-value=0.25 Score=49.41 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=28.4
Q ss_pred EEEECCCCCChHHHHHHHHHHhCCcEEEEeccc
Q psy11009 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777 (863)
Q Consensus 745 vLL~GPPGtGKT~LAraIA~el~~~~i~vs~s~ 777 (863)
+|++|++|+|||++|..++.. +.+.+++....
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 689999999999999999988 88888887754
No 415
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=91.06 E-value=0.24 Score=48.07 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=22.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
....+++.|++|+|||+|..++....
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34589999999999999999997653
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.91 E-value=0.32 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.278 Sum_probs=23.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
++.-+.|.||.|+||||+++.+|..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 45678899999999999999999876
No 417
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=90.91 E-value=0.76 Score=50.15 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.9
Q ss_pred ceEEEECCCCCChHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLA 759 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LA 759 (863)
+.+++.+|+|+|||..+
T Consensus 53 ~~~lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 53 RDLMACAQTGSGKTAAF 69 (417)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEEcCCCCHHHHHH
Confidence 58999999999999843
No 418
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=90.89 E-value=0.87 Score=46.31 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=15.5
Q ss_pred ceEEEECCCCCChHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAK 760 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAr 760 (863)
+.+++.+|+|+|||..+-
T Consensus 67 ~~~l~~a~TGsGKT~~~~ 84 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAFS 84 (245)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 579999999999998643
No 419
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.59 E-value=0.55 Score=51.03 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=16.4
Q ss_pred CceEEEECCCCCChHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAK 760 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAr 760 (863)
.+.+++.+|+|+|||..+-
T Consensus 64 ~~~~lv~apTGsGKT~~~~ 82 (412)
T 3fht_A 64 PQNLIAQSQSGTGKTAAFV 82 (412)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCchHHHHHH
Confidence 3689999999999998753
No 420
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.53 E-value=0.6 Score=50.86 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=16.4
Q ss_pred ceEEEECCCCCChHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAV 762 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraI 762 (863)
+.+++.+|+|+|||..+-..
T Consensus 78 ~~~lv~a~TGsGKT~~~~~~ 97 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAIS 97 (414)
T ss_dssp CCEEECCCSCSSSHHHHHHH
T ss_pred CCEEEECCCCCcccHHHHHH
Confidence 46999999999999875443
No 421
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=90.48 E-value=0.16 Score=54.55 Aligned_cols=26 Identities=15% Similarity=0.138 Sum_probs=23.0
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
+.-+.|.||+|+|||+++++++..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34678999999999999999999876
No 422
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=90.44 E-value=0.2 Score=50.14 Aligned_cols=29 Identities=31% Similarity=0.478 Sum_probs=24.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHhCCcE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTF 770 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el~~~~ 770 (863)
..+++||.|++|+|||++|.++... |..+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 4579999999999999999999875 4433
No 423
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.36 E-value=0.18 Score=54.59 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
++.-+.|.||+|+|||||+++|+..+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhc
Confidence 34567899999999999999999887
No 424
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=90.35 E-value=0.18 Score=58.29 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=24.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCC
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGT 768 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~ 768 (863)
..|+|.|++|||||++|+++|+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57899999999999999999999985
No 425
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=90.29 E-value=0.64 Score=52.22 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=21.9
Q ss_pred ceEEEECCCCCChHHHH-HHHHH---HhCCcEEEEec
Q psy11009 743 KGVLMVGPPGTGKTMLA-KAVAT---ECGTTFFNVCS 775 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LA-raIA~---el~~~~i~vs~ 775 (863)
+.+|+.||+|+|||..+ .++.. .-+...+.+.+
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~P 39 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAP 39 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEES
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECc
Confidence 68999999999999975 33332 22444444443
No 426
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=90.24 E-value=0.19 Score=51.48 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
+-+.|.|++|+|||++++.++..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999983
No 427
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=90.20 E-value=1.3 Score=53.02 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=23.2
Q ss_pred CceEEEECCCCCChHHHHH-HHHHH---hCCcEEEEec
Q psy11009 742 WKGVLMVGPPGTGKTMLAK-AVATE---CGTTFFNVCS 775 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAr-aIA~e---l~~~~i~vs~ 775 (863)
.+++++.||+|+|||+.+- ++... -+...+.+.+
T Consensus 39 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P 76 (720)
T 2zj8_A 39 GKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVP 76 (720)
T ss_dssp TCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECS
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4689999999999999873 33322 2455555554
No 428
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=89.95 E-value=1.5 Score=49.84 Aligned_cols=34 Identities=21% Similarity=0.425 Sum_probs=25.1
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh--------CCcEEEEecc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC--------GTTFFNVCSS 776 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el--------~~~~i~vs~s 776 (863)
+++|+.+|+|+|||..+-..+... +...+.+.+.
T Consensus 23 ~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~ 64 (556)
T 4a2p_A 23 KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATK 64 (556)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSS
T ss_pred CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCC
Confidence 579999999999999876665544 5556666543
No 429
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.80 E-value=0.09 Score=54.82 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=25.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh-CCcEE
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC-GTTFF 771 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el-~~~~i 771 (863)
.+.-|+|.|++|+|||++++.++..+ +..++
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i 54 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 34578899999999999999999998 44443
No 430
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=89.76 E-value=0.52 Score=52.78 Aligned_cols=25 Identities=40% Similarity=0.581 Sum_probs=22.2
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
...++|+||+|||||+|++.|++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 3579999999999999999998865
No 431
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=89.64 E-value=0.3 Score=49.83 Aligned_cols=32 Identities=25% Similarity=0.243 Sum_probs=25.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCcEEEEe
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVC 774 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs 774 (863)
.-|.|.|++|+|||++++.++..+ +.+++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 457889999999999999999887 45555443
No 432
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=89.33 E-value=0.29 Score=57.12 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=29.3
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC----CcEEEEecccc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECG----TTFFNVCSSTL 778 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~----~~~i~vs~s~l 778 (863)
...+.|.|++|||||+++++||..++ ..+..++...+
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 35788999999999999999999984 34555666554
No 433
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=89.26 E-value=0.65 Score=50.15 Aligned_cols=19 Identities=37% Similarity=0.356 Sum_probs=15.9
Q ss_pred ceEEEECCCCCChHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKA 761 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAra 761 (863)
+.+++.+|+|+|||..+-.
T Consensus 59 ~~~lv~~~TGsGKT~~~~~ 77 (394)
T 1fuu_A 59 HDVLAQAQSGTGKTGTFSI 77 (394)
T ss_dssp CCEEECCCSSHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHH
Confidence 4799999999999987443
No 434
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=89.21 E-value=0.34 Score=57.23 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=19.0
Q ss_pred eEEEECCCCCChHHHHHHHHHHh
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el 766 (863)
.+++.||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999877766553
No 435
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.16 E-value=0.51 Score=47.08 Aligned_cols=42 Identities=24% Similarity=0.214 Sum_probs=28.8
Q ss_pred ccccCCccc-ccccceeecceeEeeecccccccCcCCCcccccccccccc
Q psy11009 59 FLTSKYPSV-FLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKM 107 (863)
Q Consensus 59 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 107 (863)
.++.-||.| .+|.-.++.|-++-|. |.+|||||++++.++..
T Consensus 6 ~i~tG~~~LD~~l~ggi~~G~~~~l~-------G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 6 RISTGSKSLDKLLGGGIETQAITEVF-------GEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EECCSCHHHHHHTTSSEESSEEEEEE-------ESTTSSHHHHHHHHHHH
T ss_pred ccCCCChhHHhHhcCCCCCCcEEEEE-------CCCCCCHHHHHHHHHHH
Confidence 445566666 3354456677555554 78999999999998763
No 436
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=89.13 E-value=0.93 Score=47.12 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=16.4
Q ss_pred ceEEEECCCCCChHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAV 762 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraI 762 (863)
+.+|+.+|+|+|||..+-..
T Consensus 92 ~~~lv~a~TGsGKT~~~~l~ 111 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFLIP 111 (262)
T ss_dssp CCCEECCCTTSCHHHHHHHH
T ss_pred CcEEEEccCCCCchHHHHHH
Confidence 57999999999999875433
No 437
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=89.10 E-value=0.26 Score=53.65 Aligned_cols=26 Identities=12% Similarity=0.089 Sum_probs=22.9
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
+.-+.|.||+|||||+++++++..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34678999999999999999999875
No 438
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=89.09 E-value=1.4 Score=47.40 Aligned_cols=178 Identities=10% Similarity=0.010 Sum_probs=99.0
Q ss_pred CcCCCcccccccccccccchhcccchhhhccCcchhHHHHHHHhhhhhHHHHHHHHhhcccceeeeccCCCCcEEEEEec
Q psy11009 91 PVVGSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKM 170 (863)
Q Consensus 91 ~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~gk~s~~e~~~~~~~vg~se~~~r~i~~~~~~l~~~~~~~~~P~IlFiDE 170 (863)
|.+|.||+.+++.+++. +.-+. +.+...+.++ | +..++.+++...+...| ...-||+|||
T Consensus 25 G~e~~~~~~~~~~l~~~----~~~~~-~~~~~~~~~~---------~--~~~~~~l~~~~~~~plf----~~~kvvii~~ 84 (343)
T 1jr3_D 25 GNDPLLLQESQDAVRQV----AAAQG-FEEHHTFSID---------P--NTDWNAIFSLCQAMSLF----ASRQTLLLLL 84 (343)
T ss_dssp ESCHHHHHHHHHHHHHH----HHHHT-CCEEEEEECC---------T--TCCHHHHHHHHHHHHHC----CSCEEEEEEC
T ss_pred CCcHHHHHHHHHHHHHH----HHhCC-CCeeEEEEec---------C--CCCHHHHHHHhcCcCCc----cCCeEEEEEC
Confidence 88999999999888873 10000 0000000000 1 13345555443222222 2346999999
Q ss_pred ccc-cccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCC------CccHHHhhccceEEEecCCCHHHHHHHHH
Q psy11009 171 FSS-LAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPW------DIDEALRRRLEKRIYIPLPSKAGREALLK 243 (863)
Q Consensus 171 iDa-l~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~------~LD~AllRRFD~~I~i~lPd~~~R~~IL~ 243 (863)
++. +. +...+.|+..+.... .++++|.+|+.++ .+-+++..|- ..+.|..|+..+...+++
T Consensus 85 ~~~kl~--------~~~~~aLl~~le~p~---~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~ 152 (343)
T 1jr3_D 85 PENGPN--------AAINEQLLTLTGLLH---DDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVA 152 (343)
T ss_dssp CSSCCC--------TTHHHHHHHHHTTCB---TTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHH
T ss_pred CCCCCC--------hHHHHHHHHHHhcCC---CCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHH
Confidence 998 53 234566776665332 2445554555433 4556766676 478999999999999999
Q ss_pred HHhccCCCC-CcccHHHHhhhCCCCCHHHHHHHHHHHHHHHHHhhhcCCChhhhccCCccccCCCCCHHHHHHHHHHhc
Q psy11009 244 INLKEVKVD-PAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCN 321 (863)
Q Consensus 244 ~~l~~~~l~-~dvdl~~LA~~TeG~SGADI~~lv~~Aal~air~~~~~~~~~~~~~~~~~~~~~~Vt~~Df~~AL~~v~ 321 (863)
..++...+. .+-.+..|+..+.| +-.++.+.+...++.+ . ...||.+|+...+....
T Consensus 153 ~~~~~~g~~i~~~a~~~l~~~~~g-dl~~~~~elekl~l~~---~-----------------~~~It~e~V~~~~~~~~ 210 (343)
T 1jr3_D 153 ARAKQLNLELDDAANQVLCYCYEG-NLLALAQALERLSLLW---P-----------------DGKLTLPRVEQAVNDAA 210 (343)
T ss_dssp HHHHHTTCEECHHHHHHHHHSSTT-CHHHHHHHHHHHHHHC---T-----------------TCEECHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCHHHHHHHHHHhch-HHHHHHHHHHHHHHhc---C-----------------CCCCCHHHHHHHHhhhh
Confidence 988655443 22335667777654 3333333333322211 1 12588888877766543
No 439
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.98 E-value=0.2 Score=51.78 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||||.++++...
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 44578899999999999999998765
No 440
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=88.88 E-value=0.48 Score=49.52 Aligned_cols=23 Identities=39% Similarity=0.553 Sum_probs=20.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e 765 (863)
..|.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999754
No 441
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=88.87 E-value=0.25 Score=46.03 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.4
Q ss_pred ceEEEECCCCCChHHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e 765 (863)
+.+++.|++|+|||+|+..+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 442
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=88.86 E-value=0.19 Score=51.15 Aligned_cols=23 Identities=48% Similarity=0.635 Sum_probs=20.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e 765 (863)
.-+.|.||.|+|||+|.++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999875
No 443
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=88.82 E-value=0.96 Score=49.19 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
...-+.|.|+||+|||+++.+++..+
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999998765
No 444
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.79 E-value=0.69 Score=47.50 Aligned_cols=32 Identities=9% Similarity=-0.081 Sum_probs=24.0
Q ss_pred eEEEECCCCCChHHHHHHHHHHh---CCcEEEEec
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCS 775 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~ 775 (863)
=.+++||.|+|||+.+.-++... +..++.+.+
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~ 64 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKP 64 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEe
Confidence 34589999999999888776655 666666653
No 445
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=88.74 E-value=0.32 Score=50.32 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=18.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.-|.|.||+|+|||++++.++..+
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458889999999999999999887
No 446
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.73 E-value=0.23 Score=48.21 Aligned_cols=25 Identities=28% Similarity=0.410 Sum_probs=21.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhC
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECG 767 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~ 767 (863)
.-.+|+||.|+|||++++||+-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3578999999999999999988764
No 447
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=88.72 E-value=0.23 Score=48.90 Aligned_cols=22 Identities=27% Similarity=0.542 Sum_probs=20.4
Q ss_pred eEEEECCCCCChHHHHHHHHHH
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~e 765 (863)
.++|.||+|+|||+|.+.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 448
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=88.67 E-value=1.2 Score=57.41 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=24.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
++...+.++||+|||||+|++++.+..
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 455689999999999999999998876
No 449
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=88.65 E-value=1.6 Score=50.14 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=16.2
Q ss_pred CceEEEECCCCCChHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAK 760 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAr 760 (863)
.+.+|+.+|+|+|||..+-
T Consensus 111 ~~~~lv~apTGsGKTl~~~ 129 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAFL 129 (563)
T ss_dssp SEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCccHHHH
Confidence 4689999999999998543
No 450
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=88.64 E-value=0.22 Score=51.57 Aligned_cols=26 Identities=35% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||+|.++++...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578899999999999999998775
No 451
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=88.33 E-value=1.7 Score=54.29 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=19.6
Q ss_pred CceEEEECCCCCChHHHHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVA 763 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA 763 (863)
..-++|+||.|+|||++.|.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 3578999999999999999994
No 452
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.31 E-value=0.28 Score=48.53 Aligned_cols=24 Identities=29% Similarity=0.268 Sum_probs=21.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+-+.|.||+|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998775
No 453
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.30 E-value=0.21 Score=51.20 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.2
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||+|.++++...
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33468899999999999999998765
No 454
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=88.23 E-value=0.23 Score=48.76 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=20.8
Q ss_pred eEEEECCCCCChHHHHHHHHHHh
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el 766 (863)
.++|.||+|+|||+|.+.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 68999999999999999998754
No 455
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=88.23 E-value=2.5 Score=36.74 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHhhhcCCCccchhHHHHHHHHHHHHHHhhcChhHHhhhHHHHHHHHHHHHHHHHHH
Q psy11009 441 YAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRL 508 (863)
Q Consensus 441 l~~i~e~~~laRe~a~~gnY~~~~~~y~g~l~qi~k~~~sv~d~~~~k~~W~~v~~~l~~E~~~Vk~i 508 (863)
+..-.+-+..|-+.=..|+|++|+.+|..+++.+...+..-.|+ ..|..+.+--.+-.+-.|.+|..
T Consensus 10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~-~~k~~l~~k~~eYl~RAE~Lk~~ 76 (85)
T 2v6x_A 10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNP-KSKDLIRAKFTEYLNRAEQLKKH 76 (85)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566677778888999999999999999999999888888 66665555555555555555554
No 456
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=88.16 E-value=0.31 Score=49.87 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=27.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEe
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs 774 (863)
..|-|+|..|||||++++.++. +|++++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4788999999999999999998 999987654
No 457
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=88.15 E-value=0.25 Score=52.01 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||||.++++..+
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568899999999999999998765
No 458
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=88.13 E-value=0.33 Score=48.02 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=21.5
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+-+.|.|++|+|||+++..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999998875
No 459
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=88.11 E-value=0.16 Score=57.83 Aligned_cols=24 Identities=38% Similarity=0.365 Sum_probs=19.7
Q ss_pred CCceEEEECCCCCChHHHHHHHHH
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~ 764 (863)
..+-.++.|+||||||++...++.
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc
Confidence 335678999999999999987764
No 460
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.07 E-value=0.29 Score=50.93 Aligned_cols=24 Identities=25% Similarity=0.553 Sum_probs=21.9
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.-+.|.||.|+|||||.++++...
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 678899999999999999999775
No 461
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=88.07 E-value=0.77 Score=57.13 Aligned_cols=42 Identities=24% Similarity=0.324 Sum_probs=30.9
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh---C--CcEEEEeccccccccc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC---G--TTFFNVCSSTLTSKYR 783 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el---~--~~~i~vs~s~l~~~~~ 783 (863)
..++||.++.|+|||..|-+++..+ + .+++.+.+..+...|.
T Consensus 170 ~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~sLl~Qw~ 216 (968)
T 3dmq_A 170 APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWL 216 (968)
T ss_dssp SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCTTTHHHHH
T ss_pred CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCHHHHHHHH
Confidence 3589999999999999988887664 3 2666666656655443
No 462
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=88.05 E-value=0.59 Score=55.71 Aligned_cols=34 Identities=32% Similarity=0.461 Sum_probs=22.8
Q ss_pred CceEEEECCCCCChHHHHHHH-HHHh--CCcEEEEec
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAV-ATEC--GTTFFNVCS 775 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraI-A~el--~~~~i~vs~ 775 (863)
.+++++.+|+|+|||+.+-.. ...+ +...+.+.+
T Consensus 40 ~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P 76 (702)
T 2p6r_A 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVP 76 (702)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeC
Confidence 368999999999999987433 2222 444555443
No 463
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.03 E-value=0.33 Score=48.25 Aligned_cols=25 Identities=28% Similarity=0.558 Sum_probs=22.1
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
...++|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998764
No 464
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=87.98 E-value=0.66 Score=54.70 Aligned_cols=23 Identities=17% Similarity=0.424 Sum_probs=20.6
Q ss_pred eEEEECCCCCChHHHHHHHHHHh
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el 766 (863)
-+.|.||+|+|||+|.++|+...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 48999999999999999998753
No 465
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=87.98 E-value=0.3 Score=50.80 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=22.5
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+.-|+|.|++|+|||++++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999887
No 466
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.87 E-value=0.26 Score=54.48 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||+|||||+|.++||...
T Consensus 29 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33468899999999999999999865
No 467
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.79 E-value=0.27 Score=51.00 Aligned_cols=27 Identities=22% Similarity=0.398 Sum_probs=23.0
Q ss_pred CCCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 740 RPWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 740 ~p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
.+..-+.|.||.|+|||+|.++++...
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578899999999999999998765
No 468
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=87.64 E-value=0.98 Score=46.67 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=20.7
Q ss_pred CceEEEECCCCCChHHHHHHHHHH
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~e 765 (863)
.-.|+|.|.||+|||+|..++...
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTS
T ss_pred ceEEEEECCCCCcHHHHHHHHhCC
Confidence 357999999999999999998643
No 469
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=87.64 E-value=1.2 Score=51.39 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=22.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCcEEEEec
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~~i~vs~ 775 (863)
+.+|+.+|+|+|||..+...+-..+...+.+.+
T Consensus 41 ~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P 73 (523)
T 1oyw_A 41 RDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSP 73 (523)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSSSEEEEECS
T ss_pred CCEEEECCCCcHHHHHHHHHHHHhCCCEEEECC
Confidence 579999999999998766555444444444443
No 470
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=87.61 E-value=0.33 Score=45.46 Aligned_cols=23 Identities=17% Similarity=0.310 Sum_probs=20.6
Q ss_pred ceEEEECCCCCChHHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e 765 (863)
-.+++.|++|+|||+|+..+...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 37899999999999999999864
No 471
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=87.61 E-value=0.64 Score=51.19 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=17.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e 765 (863)
+.+++.+|+|+|||..+-..+..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~~~~ 59 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMTALW 59 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999955444433
No 472
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=87.61 E-value=0.26 Score=54.07 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=23.8
Q ss_pred ceEEEECCCCCChHHHHHHHHHHhCCc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATECGTT 769 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el~~~ 769 (863)
..+.|.||+|||||+|+++|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 568999999999999999999987543
No 473
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=87.60 E-value=0.66 Score=53.72 Aligned_cols=86 Identities=12% Similarity=0.012 Sum_probs=50.7
Q ss_pred CCCcEEEEEecccccccccccchhHhHHHHHHHHhhccCCCCCCeEEEEccCCCCCccHHHhhccceEEEec---CCCHH
Q psy11009 160 PPGPTLAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRLEKRIYIP---LPSKA 236 (863)
Q Consensus 160 ~~~P~IlFiDEiDal~~~R~~~~~~~v~n~lL~~ld~~~~~~~~VivIaATN~p~~LD~AllRRFD~~I~i~---lPd~~ 236 (863)
..+|++|+||+++.. .+++.+.. +..||.||..+..... . + ...+.++ ..+.+
T Consensus 234 ~~~~~LLVLDdv~~~-----------------~~l~~l~~---~~~ilvTsR~~~~~~~--~-~-~~~~~v~~l~~L~~~ 289 (591)
T 1z6t_A 234 KHPRSLLILDDVWDS-----------------WVLKAFDS---QCQILLTTRDKSVTDS--V-M-GPKYVVPVESSLGKE 289 (591)
T ss_dssp TCTTCEEEEEEECCH-----------------HHHHTTCS---SCEEEEEESCGGGGTT--C-C-SCEEEEECCSSCCHH
T ss_pred CCCCeEEEEeCCCCH-----------------HHHHHhcC---CCeEEEECCCcHHHHh--c-C-CCceEeecCCCCCHH
Confidence 347899999999842 12222322 4567777766542221 0 1 3345554 46788
Q ss_pred HHHHHHHHHhccCCCCCcccHHHHhhhCCCCCH
Q psy11009 237 GREALLKINLKEVKVDPAVDLTHIASQLDGYSG 269 (863)
Q Consensus 237 ~R~~IL~~~l~~~~l~~dvdl~~LA~~TeG~SG 269 (863)
+-.++|..++..-.....-....|++.|+|.--
T Consensus 290 ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~PL 322 (591)
T 1z6t_A 290 KGLEILSLFVNMKKADLPEQAHSIIKECKGSPL 322 (591)
T ss_dssp HHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCCcccccHHHHHHHHHhCCCcH
Confidence 888888888753111112346789999988754
No 474
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.58 E-value=0.33 Score=51.21 Aligned_cols=25 Identities=32% Similarity=0.578 Sum_probs=22.1
Q ss_pred CCceEEEECCCCCChHHHHHHHHHH
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~e 765 (863)
+..-+.|.||.|+|||||.++++..
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456889999999999999999985
No 475
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=87.58 E-value=0.49 Score=48.47 Aligned_cols=29 Identities=24% Similarity=0.190 Sum_probs=25.3
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhCCcE
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECGTTF 770 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~~~~ 770 (863)
.+-|.|.|++|+|||++++.++..++...
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~ 33 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNC 33 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccc
Confidence 35688999999999999999999998643
No 476
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=87.55 E-value=0.34 Score=45.10 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=20.3
Q ss_pred ceEEEECCCCCChHHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e 765 (863)
-.|++.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999998754
No 477
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=87.37 E-value=0.33 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.414 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||+|||||+|.++||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 33467899999999999999999875
No 478
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=87.37 E-value=0.33 Score=54.12 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||+|||||+|.++||...
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 33468899999999999999999876
No 479
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.35 E-value=0.33 Score=53.70 Aligned_cols=26 Identities=31% Similarity=0.323 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||+|||||||.++||...
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 33568899999999999999999765
No 480
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=87.30 E-value=0.3 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.537 Sum_probs=21.0
Q ss_pred eEEEECCCCCChHHHHHHHHHHh
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el 766 (863)
.+.|.||+|+|||+|.++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999775
No 481
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=87.30 E-value=0.3 Score=51.36 Aligned_cols=26 Identities=27% Similarity=0.347 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||+|.++|+..+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 44578899999999999999998765
No 482
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=87.27 E-value=0.26 Score=47.81 Aligned_cols=21 Identities=33% Similarity=0.640 Sum_probs=19.4
Q ss_pred eEEEECCCCCChHHHHHHHHH
Q psy11009 744 GVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~ 764 (863)
.++|.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999975
No 483
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.17 E-value=0.31 Score=51.45 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||||.++++..+
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 44568899999999999999999765
No 484
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.15 E-value=0.29 Score=51.23 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=22.3
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||||.++++...
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568899999999999999998765
No 485
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=87.14 E-value=0.3 Score=51.63 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=22.6
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||+|.++|+..+
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 44578899999999999999998765
No 486
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.14 E-value=0.34 Score=50.48 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=21.9
Q ss_pred CCceEEEECCCCCChHHHHHHHHHH
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~e 765 (863)
+..-+.|.||.|+|||||.++++..
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456889999999999999999985
No 487
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=87.12 E-value=1.2 Score=45.55 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.4
Q ss_pred ceEEEECCCCCChHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAK 760 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAr 760 (863)
+.+++.+|+|+|||..+-
T Consensus 61 ~~~l~~a~TGsGKT~~~~ 78 (253)
T 1wrb_A 61 RDIMACAQTGSGKTAAFL 78 (253)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 579999999999998644
No 488
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=87.09 E-value=0.33 Score=45.06 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.5
Q ss_pred eEEEECCCCCChHHHHHHHHHHh
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el 766 (863)
.+++.|++|+|||+|+..+....
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999997653
No 489
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=87.08 E-value=0.35 Score=53.72 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||+|||||+|.++||...
T Consensus 36 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33567899999999999999999765
No 490
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=87.05 E-value=0.37 Score=44.88 Aligned_cols=23 Identities=35% Similarity=0.559 Sum_probs=20.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATE 765 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~e 765 (863)
..+++.|++|+|||+|...+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999764
No 491
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.01 E-value=0.34 Score=53.52 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=22.0
Q ss_pred CceEEEECCCCCChHHHHHHHHHHh
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
..-+.|.||+|||||+|.++||...
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3468899999999999999999765
No 492
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.01 E-value=0.37 Score=45.07 Aligned_cols=24 Identities=13% Similarity=0.299 Sum_probs=20.7
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el 766 (863)
-.|++.|++|+|||+|..++...-
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 369999999999999999987543
No 493
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.99 E-value=0.31 Score=50.11 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.7
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||+|.++++..+
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999999875
No 494
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.93 E-value=0.31 Score=50.84 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.5
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||+|.++++..+
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999998765
No 495
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=86.90 E-value=0.33 Score=46.18 Aligned_cols=22 Identities=23% Similarity=0.520 Sum_probs=19.9
Q ss_pred ceEEEECCCCCChHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~ 764 (863)
..++|.|++|+|||+|.++++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3689999999999999999975
No 496
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=86.89 E-value=0.57 Score=57.11 Aligned_cols=23 Identities=39% Similarity=0.647 Sum_probs=18.9
Q ss_pred eEEEECCCCCChHHHHHHHHHHh
Q psy11009 744 GVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 744 gvLL~GPPGtGKT~LAraIA~el 766 (863)
-+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57999999999999877766553
No 497
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=86.87 E-value=0.37 Score=45.56 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=19.7
Q ss_pred ceEEEECCCCCChHHHHHHHHH
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVAT 764 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~ 764 (863)
-.|+|.|+||+|||+|...+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 4799999999999999999864
No 498
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=86.80 E-value=0.45 Score=55.49 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=29.6
Q ss_pred CceEEEECCCCCChHHHHHHHHHHhC---CcEEEEecccc
Q psy11009 742 WKGVLMVGPPGTGKTMLAKAVATECG---TTFFNVCSSTL 778 (863)
Q Consensus 742 ~kgvLL~GPPGtGKT~LAraIA~el~---~~~i~vs~s~l 778 (863)
+.-++|.|+||+|||++|+.++..++ .++..++...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 35689999999999999999999874 46666665544
No 499
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=86.78 E-value=0.96 Score=57.10 Aligned_cols=34 Identities=18% Similarity=0.257 Sum_probs=24.0
Q ss_pred ceEEEECCCCCChHHHHHHHHHHh---CCcEEEEecc
Q psy11009 743 KGVLMVGPPGTGKTMLAKAVATEC---GTTFFNVCSS 776 (863)
Q Consensus 743 kgvLL~GPPGtGKT~LAraIA~el---~~~~i~vs~s 776 (863)
+.+|+.||+|+|||.++-..+... +...+.+.+.
T Consensus 200 ~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~Pt 236 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPI 236 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 589999999999999765444333 5555555543
No 500
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.71 E-value=0.32 Score=51.68 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.4
Q ss_pred CCceEEEECCCCCChHHHHHHHHHHh
Q psy11009 741 PWKGVLMVGPPGTGKTMLAKAVATEC 766 (863)
Q Consensus 741 p~kgvLL~GPPGtGKT~LAraIA~el 766 (863)
+..-+.|.||.|+|||||.++++..+
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 33568899999999999999998765
Done!