RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11009
(863 letters)
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 317 bits (814), Expect = e-100
Identities = 99/277 (35%), Positives = 150/277 (54%), Gaps = 16/277 (5%)
Query: 586 SSIPNKSTPQSNNS-TLKRGNKTPANNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSN 644
++P + P ++ S +L R + +++ +Y + S + ++
Sbjct: 3 GAVPKRKDPLTHTSNSLPRSKTVMKTGSAGLSGHHRAPSYSGLSMVSGVKQGSGPAPTTH 62
Query: 645 NAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCDNDLVEMLERDMVQKNP 704
+N TN + + ++ D++L ++ ++V
Sbjct: 63 KGTPKTNRTNKPSTPTTATRK------------KKDLKNFRNVDSNLANLIMNEIVDNGT 110
Query: 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT 764
+++DDIA AK+ L+E V+LP PE F G+R P +G+L+ GPPG GKTMLAKAVA
Sbjct: 111 AVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAA 170
Query: 765 ECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHE 824
E TFFN+ +++LTSKY GE EKLVR LF +AR PS IFID++DSL R E EH+
Sbjct: 171 ESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERR-EGEHD 229
Query: 825 ASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
ASRR+K+E L++ DG+ SA D V+V+ ATN P E
Sbjct: 230 ASRRLKTEFLIEFDGVQSAGDDR--VLVMGATNRPQE 264
Score = 149 bits (378), Expect = 3e-39
Identities = 41/120 (34%), Positives = 68/120 (56%), Gaps = 6/120 (5%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGA 270
P ++DEA+ RR KR+Y+ LP++ R LLK L + +L +A DGYSG+
Sbjct: 261 RPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGS 320
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLE 330
D+T + +DA++ +R L PEQ++ + E+ + DF E+L + +SV+ + LE
Sbjct: 321 DLTALAKDAALGPIRE----LKPEQVKNMSASEMR-NIRLSDFTESLKKIKRSVSPQTLE 375
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 311 bits (798), Expect = 1e-99
Identities = 92/172 (53%), Positives = 120/172 (69%), Gaps = 2/172 (1%)
Query: 690 DLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVG 749
LV+++ ++V+ + W DIA AK+ L+E V+LP PE F G+R P KG+L+ G
Sbjct: 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFG 61
Query: 750 PPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDE 809
PPG GKT+LA+AVATEC TF N+ +++LTSKY G+ EKLVR LF +AR PS IFIDE
Sbjct: 62 PPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE 121
Query: 810 IDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
+DSL S R SEHEASRR+K+E LV+ DGL D + ++VLAATN P E
Sbjct: 122 VDSLLSERS-SSEHEASRRLKTEFLVEFDGLPGNPDGDR-IVVLAATNRPQE 171
Score = 151 bits (383), Expect = 8e-41
Identities = 39/120 (32%), Positives = 65/120 (54%), Gaps = 6/120 (5%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAV-DLTHIASQLDGYSGA 270
P ++DEA RR KR+Y+ LP + RE LL L++ L +A DGYSG+
Sbjct: 168 RPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGS 227
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLE 330
D+T + +DA++ +R L EQ++ + + ++++DF +L R +SVA + L
Sbjct: 228 DLTALAKDAALEPIRE----LNVEQVKCLDISAMR-AITEQDFHSSLKRIRRSVAPQSLN 282
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 312 bits (801), Expect = 3e-99
Identities = 88/229 (38%), Positives = 135/229 (58%), Gaps = 4/229 (1%)
Query: 634 NENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESY-GCDNDLV 692
+ V T++ Q P + N E + ++
Sbjct: 8 SSGVDLGTENLYFQSMVPPIPKQDGGEQNGGMQCKPYGAGPTEPAHPVDERLKNLEPKMI 67
Query: 693 EMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPG 752
E++ +++ P + W+DIA + AK ++E VV PM P+ F G+R P KG+L+ GPPG
Sbjct: 68 ELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPG 127
Query: 753 TGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDS 812
TGKT++ K +A++ G TFF++ +S+LTSK+ GE EK+VR LF +AR P+ IFIDEIDS
Sbjct: 128 TGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDS 187
Query: 813 LCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
L S+RG + EHE+SRR+K+E LVQ+DG +++ + ++V+ ATN P E
Sbjct: 188 LLSQRG-DGEHESSRRIKTEFLVQLDGATTSSEDR--ILVVGATNRPQE 233
Score = 146 bits (370), Expect = 2e-38
Identities = 43/120 (35%), Positives = 67/120 (55%), Gaps = 6/120 (5%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGA 270
P +IDEA RRRL KR+YIPLP + R+ ++ + + + ++ I Q D +SGA
Sbjct: 230 RPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGA 289
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLE 330
D+T +CR+AS+ +R L I I +++ P++ DFE A SV+ +DLE
Sbjct: 290 DMTQLCREASLGPIRS----LQTADIATITPDQVR-PIAYIDFENAFRTVRPSVSPKDLE 344
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 308 bits (790), Expect = 4e-98
Identities = 91/165 (55%), Positives = 119/165 (72%), Gaps = 4/165 (2%)
Query: 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKT 756
++ + PN++W+D+A L AK L+EAV+LP+ P FKG R+P G+L+ GPPGTGK+
Sbjct: 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 65
Query: 757 MLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSR 816
LAKAVATE +TFF+V SS L SK+ GESEKLV+ LF MAR PS IFID++D+L
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 817 RGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
RG E E EASRR+K+ELLVQM+G+ + V+VL ATN PW+
Sbjct: 126 RG-EGESEASRRIKTELLVQMNGVGNDSQG---VLVLGATNIPWQ 166
Score = 143 bits (363), Expect = 5e-38
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 27/146 (18%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVK-VDPAVDLTHIASQLDGYSGA 270
IPW +D A+RRR E+RIYIPLP A R + +IN+ + V D + + +GYSG+
Sbjct: 163 IPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGS 222
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIR-------------------------QIPKEELD 305
DI V +DA M +R+ + + I +EL
Sbjct: 223 DIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELK 282
Query: 306 LP-VSQRDFEEALARCNKSVAREDLE 330
P ++ +DF +A+ +V +DL
Sbjct: 283 EPDLTIKDFLKAIKSTRPTVNEDDLL 308
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 303 bits (779), Expect = 2e-96
Identities = 91/163 (55%), Positives = 116/163 (71%), Gaps = 5/163 (3%)
Query: 700 VQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLA 759
V + PN++W D+A L AK L+EAV+LP+ P F G R PW+G+L+ GPPGTGK+ LA
Sbjct: 3 VIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62
Query: 760 KAVATECG-TTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRG 818
KAVATE +TFF++ SS L SK+ GESEKLV+ LF++AR PS IFIDEIDSLC R
Sbjct: 63 KAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRS 122
Query: 819 SESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
E+E EA+RR+K+E LVQM G+ D ++VL ATN PW
Sbjct: 123 -ENESEAARRIKTEFLVQMQGVGVDNDG---ILVLGATNIPWV 161
Score = 143 bits (362), Expect = 8e-38
Identities = 45/152 (29%), Positives = 66/152 (43%), Gaps = 33/152 (21%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGA 270
IPW +D A+RRR EKRIYIPLP R A+ K++L + D + + DGYSGA
Sbjct: 158 IPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGA 217
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIR-------------------------------QI 299
DI+ + RDA M +R+ +++R +
Sbjct: 218 DISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDV 277
Query: 300 PKEELDL-PVSQRDFEEALARCNKSVAREDLE 330
P ++L VS D +L+ +V DL
Sbjct: 278 PGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLL 309
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 300 bits (770), Expect = 1e-94
Identities = 98/201 (48%), Positives = 130/201 (64%), Gaps = 4/201 (1%)
Query: 661 SNNNPGNSNSHDDKPVMQERRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRL 720
S + SN + K +E + L L ++ + PN++W+D+A L AK
Sbjct: 3 SPSAGSGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEA 62
Query: 721 LEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS 780
L+EAV+LP+ P FKG R+P G+L+ GPPGTGK+ LAKAVATE +TFF+V SS L S
Sbjct: 63 LKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 122
Query: 781 KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL 840
K+ GESEKLV+ LF MAR PS IFID++D+L RG E E EASRR+K+ELLVQM+G+
Sbjct: 123 KWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRG-EGESEASRRIKTELLVQMNGV 181
Query: 841 SSAEDSSKVVMVLAATNFPWE 861
+ V+VL ATN PW+
Sbjct: 182 GNDSQG---VLVLGATNIPWQ 199
Score = 141 bits (357), Expect = 7e-37
Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 27/146 (18%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVK-VDPAVDLTHIASQLDGYSGA 270
IPW +D A+RRR E+RIYIPLP A R + +IN+ + V D + + +GYSG+
Sbjct: 196 IPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGS 255
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIR-------------------------QIPKEELD 305
DI V +DA M +R+ + + I +EL
Sbjct: 256 DIAVVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELK 315
Query: 306 L-PVSQRDFEEALARCNKSVAREDLE 330
++ +DF +A+ +V +DL
Sbjct: 316 EPDLTIKDFLKAIKSTRPTVNEDDLL 341
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 294 bits (754), Expect = 3e-91
Identities = 96/238 (40%), Positives = 130/238 (54%), Gaps = 9/238 (3%)
Query: 629 KNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGNSNSHDDKPVMQERRFESYGCD 688
+ ++++ K + P D
Sbjct: 50 QGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVKEEQSGPVDEKGNDSDGEAESD 109
Query: 689 N----DLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKG 744
+ L L+ +V + PN++W D+A L AK L+EAV+LP+ P F G R PW+G
Sbjct: 110 DPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRG 169
Query: 745 VLMVGPPGTGKTMLAKAVATECG-TTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPS 803
+L+ GPPGTGK+ LAKAVATE +TFF++ SS L SK+ GESEKLV+ LF++AR PS
Sbjct: 170 ILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPS 229
Query: 804 TIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
IFIDEIDSLC R E+E EA+RR+K+E LVQM G+ D ++VL ATN PW
Sbjct: 230 IIFIDEIDSLCGSRS-ENESEAARRIKTEFLVQMQGVGVDNDG---ILVLGATNIPWV 283
Score = 140 bits (353), Expect = 1e-35
Identities = 44/152 (28%), Positives = 67/152 (44%), Gaps = 33/152 (21%)
Query: 212 IPWDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVD-PAVDLTHIASQLDGYSGA 270
IPW +D A+RRR EKRIYIPLP R A+ +++L + D + + DGYSGA
Sbjct: 280 IPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGA 339
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIR-------------------------------QI 299
DI+ + RDA M +R+ +++R +
Sbjct: 340 DISIIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLTPCSPGDPGAIEMTWMDV 399
Query: 300 PKEELDL-PVSQRDFEEALARCNKSVAREDLE 330
P ++L VS D +L+ +V +DL
Sbjct: 400 PGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLL 431
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A
{Homo sapiens}
Length = 274
Score = 198 bits (506), Expect = 6e-58
Identities = 72/158 (45%), Positives = 96/158 (60%), Gaps = 8/158 (5%)
Query: 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTMLAKA 761
PN+ W DI L D + L A++ P+ P+ FK G+ P GVL+ GPPG GKT+LAKA
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTP-AGVLLAGPPGCGKTLLAKA 63
Query: 762 VATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES 821
VA E G F +V L + Y GESE+ VR +F+ A+ AP IF DE+D+LC RR
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE 123
Query: 822 EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
AS RV ++LL +MDGL + + V ++AATN P
Sbjct: 124 -TGASVRVVNQLLTEMDGLEARQQ----VFIMAATNRP 156
Score = 111 bits (280), Expect = 2e-27
Identities = 40/120 (33%), Positives = 69/120 (57%), Gaps = 13/120 (10%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKE---VKVDPAVDLTHIASQL--DGYS 268
ID A+ R RL+K +++ LP A R A+LK K +D V+L IA L D Y+
Sbjct: 159 IDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYT 218
Query: 269 GADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVARED 328
GAD++ + R+AS+ ++R+++ ++ E+ +L VS + FEEA + S++++D
Sbjct: 219 GADLSALVREASICALRQEM------ARQKSGNEKGELKVSHKHFEEAFKKVRSSISKKD 272
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 199 bits (507), Expect = 1e-57
Identities = 68/167 (40%), Positives = 98/167 (58%), Gaps = 9/167 (5%)
Query: 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTG 754
R+ V + P + W+DI L D KR L+E V P+ P+ F G+ KGVL GPPG G
Sbjct: 3 RETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPS-KGVLFYGPPGCG 61
Query: 755 KTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLC 814
KT+LAKA+A EC F ++ L + + GESE VR +F+ AR AP +F DE+DS+
Sbjct: 62 KTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIA 121
Query: 815 SRRGSES--EHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
RG A+ RV +++L +MDG+S+ ++ V ++ ATN P
Sbjct: 122 KARGGNIGDGGGAADRVINQILTEMDGMSTKKN----VFIIGATNRP 164
Score = 119 bits (300), Expect = 8e-30
Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID A+ R RL++ IYIPLP + R A+LK NL++ V VDL +A +G+SGA
Sbjct: 164 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 223
Query: 271 DITNVCRDASMMSMRRKI--------IGLTPEQIRQIPKEELDLPVSQRDFEEALARCNK 322
D+T +C+ A +++R I T ++ +++ + + FEEA+ +
Sbjct: 224 DLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 283
Query: 323 SVAREDLE 330
SV+ D+
Sbjct: 284 SVSDNDIR 291
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 190 bits (485), Expect = 6e-55
Identities = 72/166 (43%), Positives = 101/166 (60%), Gaps = 11/166 (6%)
Query: 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKT 756
V + PN+R++DI L + + E V LP+ PE F+ GI P KG+L+ GPPGTGKT
Sbjct: 7 EVDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPP-KGILLYGPPGTGKT 65
Query: 757 MLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSR 816
+LAKAVATE TF V S L K+ GE LV+ +F++A+ APS IFIDEID++ ++
Sbjct: 66 LLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAK 125
Query: 817 R---GSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
R + + E +R +LL +MDG + D V ++ ATN P
Sbjct: 126 RTDALTGGDREV-QRTLMQLLAEMDGFDARGD----VKIIGATNRP 166
Score = 86.2 bits (214), Expect = 1e-18
Identities = 29/117 (24%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADIT 273
+D A+ R R ++ I +P P + GR +LKI+ +++ + V+L IA +G GA++
Sbjct: 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELK 228
Query: 274 NVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVAREDLE 330
+C +A M ++R R V+ DF +A+ + + + E
Sbjct: 229 AICTEAGMNAIREL---------RDY--------VTMDDFRKAVEKIMEKKKVKVKE 268
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 198 bits (505), Expect = 3e-53
Identities = 66/161 (40%), Positives = 94/161 (58%), Gaps = 9/161 (5%)
Query: 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTGKTMLAKA 761
P + W+DI L D KR L+E V P+ P+ F G+ KGVL GPPG GKT+LAKA
Sbjct: 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPS-KGVLFYGPPGCGKTLLAKA 530
Query: 762 VATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE- 820
+A EC F ++ L + + GESE VR +F+ AR AP +F DE+DS+ RG
Sbjct: 531 IANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNI 590
Query: 821 -SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860
A+ RV +++L +MDG+S+ ++ V ++ ATN P
Sbjct: 591 GDGGGAADRVINQILTEMDGMSTKKN----VFIIGATNRPD 627
Score = 168 bits (427), Expect = 2e-43
Identities = 66/165 (40%), Positives = 94/165 (56%), Gaps = 8/165 (4%)
Query: 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTG 754
D + + +DD+ ++E V LP+ P FK G++ P +G+L+ GPPGTG
Sbjct: 192 EDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPP-RGILLYGPPGTG 250
Query: 755 KTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLC 814
KT++A+AVA E G FF + + SK GESE +R FE A AP+ IFIDE+D++
Sbjct: 251 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
Query: 815 SRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
+R + E RR+ S+LL MDGL V+V+AATN P
Sbjct: 311 PKREK-THGEVERRIVSQLLTLMDGLKQRAH----VIVMAATNRP 350
Score = 124 bits (312), Expect = 3e-29
Identities = 42/128 (32%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID A+ R RL++ IYIPLP + R A+LK NL++ V VDL +A +G+SGA
Sbjct: 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 685
Query: 271 DITNVCRDASMMSMRRKI--------IGLTPEQIRQIPKEELDLPVSQRDFEEALARCNK 322
D+T +C+ A +++R I T ++ +++ + + FEEA+ +
Sbjct: 686 DLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARR 745
Query: 323 SVAREDLE 330
SV+ D+
Sbjct: 746 SVSDNDIR 753
Score = 103 bits (259), Expect = 7e-23
Identities = 38/115 (33%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 215 DIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADI 272
ID ALRR R ++ + I +P GR +L+I+ K +K+ VDL +A++ G+ GAD+
Sbjct: 352 SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADL 411
Query: 273 TNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSVARE 327
+C +A++ ++R+K+ + E + L V+ DF AL++ N S RE
Sbjct: 412 AALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 187 bits (477), Expect = 1e-51
Identities = 67/165 (40%), Positives = 93/165 (56%), Gaps = 8/165 (4%)
Query: 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--GIRRPWKGVLMVGPPGTG 754
D + + +DDI ++E V LP+ P FK G++ P +G+L+ GPPGTG
Sbjct: 192 EDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVK-PPRGILLYGPPGTG 250
Query: 755 KTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLC 814
KT++A+AVA E G FF + + SK GESE +R FE A AP+ IFIDE+D++
Sbjct: 251 KTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIA 310
Query: 815 SRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
+R E RR+ S+LL MDGL V+V+AATN P
Sbjct: 311 PKREKTHG-EVERRIVSQLLTLMDGLKQRAH----VIVMAATNRP 350
Score = 109 bits (275), Expect = 2e-25
Identities = 41/118 (34%), Positives = 69/118 (58%), Gaps = 4/118 (3%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID ALRR R ++ + I +P GR +L+I+ K +K+ VDL +A++ G+ GA
Sbjct: 350 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 409
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELD-LPVSQRDFEEALARCNKSVARE 327
D+ +C +A++ ++R+K+ + E I E ++ L V+ DF AL++ N S RE
Sbjct: 410 DLAALCSEAALQAIRKKMDLIDLED-ETIDAEVMNSLAVTMDDFRWALSQSNPSALRE 466
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 149 bits (377), Expect = 4e-40
Identities = 32/167 (19%), Positives = 72/167 (43%), Gaps = 21/167 (12%)
Query: 709 DDIAELTDAKRLLEEAVVLPMWMPE-FFK--GIRRPWKGVLMVGPPGTGKTMLAKAVATE 765
+ + A +++ L + + + F K I+ P + + G G GK+ + V +
Sbjct: 4 NKLDGFYIAPAFMDK---LVVHITKNFLKLPNIKVP-LILGIWGGKGQGKSFQCELVFRK 59
Query: 766 CGTTFFNVCSSTLTSKYRGESEKLVRLLFEMA----RFYAPSTIFIDEIDSLCSRRGSES 821
G + + L S GE KL+R + A R +FI+++D+ R G +
Sbjct: 60 MGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTT 119
Query: 822 EHEASRRVKSELL---------VQMDGLSSAEDSSKVVMVLAATNFP 859
++ + ++ + L VQ+ G+ + +++++V ++ N
Sbjct: 120 QYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVP-IIVTGNDF 165
Score = 57.9 bits (140), Expect = 4e-09
Identities = 22/131 (16%), Positives = 42/131 (32%), Gaps = 15/131 (11%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADIT 273
+ L R R+EK + P R + + V + +D + G I
Sbjct: 168 LYAPLIRDGRMEKFYWAPTRE--DRIGVCTGIFRTDNVP----AEDVVKIVDNFPGQSID 221
Query: 274 NVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFE------EALARCNKSVARE 327
+ + ++ I +I + L+ FE E L + +E
Sbjct: 222 FFGALRARVYDDEVRKWVSGTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQE 281
Query: 328 DLENITVERIA 338
EN+ ++A
Sbjct: 282 -QENVKRVQLA 291
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 137 bits (346), Expect = 3e-36
Identities = 32/157 (20%), Positives = 62/157 (39%), Gaps = 8/157 (5%)
Query: 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVA 763
+ + I + D + + L + + R P VL+ GPP +GKT LA +A
Sbjct: 28 ASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSD--RTPLVSVLLEGPPHSGKTALAAKIA 85
Query: 764 TECGTTFFNVCSSTLTSKYRGESE-KLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESE 822
E F +CS + ++ + ++ +F+ A S + +D+I+ L
Sbjct: 86 EESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYV--PIG 143
Query: 823 HEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
S V LLV + + ++++ T+
Sbjct: 144 PRFSNLVLQALLVLLKKA---PPQGRKLLIIGTTSRK 177
Score = 37.4 bits (87), Expect = 0.012
Identities = 18/97 (18%), Positives = 35/97 (36%), Gaps = 8/97 (8%)
Query: 215 DIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYS---G 269
D+ + + I++P + A E LL+ L+ + + T IA Q+ G G
Sbjct: 178 DVLQEMEMLNAFSTTIHVP--NIATGEQLLEA-LELLGNFKDKERTTIAQQVKGKKVWIG 234
Query: 270 ADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDL 306
+ + S+ + +R+ LD
Sbjct: 235 IKKLLMLIEMSLQMDPEYRVRKFLALLREEGASPLDF 271
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding,
cell CELL division, hydrolase, membrane, metal-binding;
3.30A {Helicobacter pylori} PDB: 2r65_A*
Length = 268
Score = 124 bits (313), Expect = 9e-32
Identities = 68/172 (39%), Positives = 94/172 (54%), Gaps = 22/172 (12%)
Query: 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--------GIRRPWKGVLMVGP 750
+ + PN+R+ D+A +AK + E V +F K G + P KGVL+VGP
Sbjct: 1 INAEKPNVRFKDMAGNEEAKEEVVEIV-------DFLKYPERYANLGAKIP-KGVLLVGP 52
Query: 751 PGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEI 810
PGTGKT+LAKAVA E FF++ S+ + G VR LFE A+ APS IFIDEI
Sbjct: 53 PGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEI 112
Query: 811 DSLCSRRGSESE---HEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
D++ R + ++ + ++LL +MDG S V+VLAATN P
Sbjct: 113 DAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAP---VIVLAATNRP 161
Score = 72.7 bits (179), Expect = 3e-14
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 19/106 (17%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADIT 273
+D AL R R ++++ + P GR +LK+++K VK+ V+L +A G +GAD+
Sbjct: 164 LDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLA 223
Query: 274 NVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALAR 319
N+ +A++++ R ++E V Q+ +EA+ R
Sbjct: 224 NIINEAALLAGRNN-------------QKE----VRQQHLKEAVER 252
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
3.20A {Thermus thermophilus} SCOP: c.37.1.20
Length = 278
Score = 123 bits (311), Expect = 2e-31
Identities = 64/171 (37%), Positives = 90/171 (52%), Gaps = 22/171 (12%)
Query: 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--------GIRRPWKGVLMVGP 750
++ + P + + D+A +AK L+E V EF K G R P KGVL+VGP
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIV-------EFLKNPSRFHEMGARIP-KGVLLVGP 81
Query: 751 PGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEI 810
PG GKT LA+AVA E F S + G VR LFE A+ +AP +FIDEI
Sbjct: 82 PGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEI 141
Query: 811 DSLCSRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
D++ +RGS ++ + ++LLV+MDG ++V+AATN P
Sbjct: 142 DAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA----IVVMAATNRP 188
Score = 67.4 bits (165), Expect = 2e-12
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 19/105 (18%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADIT 273
+D AL R R +++I I P GRE +L+I+ + + VDL +A + G+ GAD+
Sbjct: 191 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 250
Query: 274 NVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALA 318
N+ +A++++ R + + ++ +D EEA +
Sbjct: 251 NLLNEAALLAAREG-------------RRK----ITMKDLEEAAS 278
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase;
2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB:
1iy0_A* 1iy1_A*
Length = 254
Score = 122 bits (308), Expect = 2e-31
Identities = 64/173 (36%), Positives = 90/173 (52%), Gaps = 22/173 (12%)
Query: 697 RDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--------GIRRPWKGVLMV 748
++ + P + + D+A +AK L+E V EF K G R P KGVL+V
Sbjct: 4 GSVLTEAPKVTFKDVAGAEEAKEELKEIV-------EFLKNPSRFHEMGARIP-KGVLLV 55
Query: 749 GPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFID 808
GPPG GKT LA+AVA E F S + G VR LFE A+ +AP +FID
Sbjct: 56 GPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFID 115
Query: 809 EIDSLCSRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
EID++ +RGS ++ + ++LLV+MDG ++V+AATN P
Sbjct: 116 EIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA----IVVMAATNRP 164
Score = 68.1 bits (167), Expect = 1e-12
Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 19/105 (18%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADIT 273
+D AL R R +++I I P GRE +L+I+ + + VDL +A + G+ GAD+
Sbjct: 167 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 226
Query: 274 NVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALA 318
N+ +A++++ R + + ++ +D EEA +
Sbjct: 227 NLLNEAALLAAREG-------------RRK----ITMKDLEEAAS 254
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A
{Escherichia coli} SCOP: c.37.1.20
Length = 257
Score = 121 bits (306), Expect = 5e-31
Identities = 62/171 (36%), Positives = 90/171 (52%), Gaps = 22/171 (12%)
Query: 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--------GIRRPWKGVLMVGP 750
+ + + D+A +AK + E V E+ + G + P KGVLMVGP
Sbjct: 2 LTEDQIKTTFADVAGCDEAKEEVAELV-------EYLREPSRFQKLGGKIP-KGVLMVGP 53
Query: 751 PGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEI 810
PGTGKT+LAKA+A E FF + S + G VR +FE A+ AP IFIDEI
Sbjct: 54 PGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEI 113
Query: 811 DSLCSRRGS--ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
D++ +RG+ H+ + +++LV+MDG E ++V+AATN P
Sbjct: 114 DAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEG----IIVIAATNRP 160
Score = 69.3 bits (170), Expect = 4e-13
Identities = 31/106 (29%), Positives = 54/106 (50%), Gaps = 19/106 (17%)
Query: 216 IDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADIT 273
+D AL R R ++++ + LP GRE +LK++++ V + P +D IA G+SGAD+
Sbjct: 163 LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 222
Query: 274 NVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALAR 319
N+ +A++ + R K VS +FE+A +
Sbjct: 223 NLVNEAALFAARGN-------------KRV----VSMVEFEKAKDK 251
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics,
structural G consortium, SGC, ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo
sapiens}
Length = 262
Score = 121 bits (306), Expect = 6e-31
Identities = 58/169 (34%), Positives = 88/169 (52%), Gaps = 29/169 (17%)
Query: 705 NIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--------GIRRPWKGVLMVGPPGTGKT 756
+ + D+A + +AK + E V ++ K G + P KG L++GPPG GKT
Sbjct: 2 GVSFKDVAGMHEAKLEVREFV-------DYLKSPERFLQLGAKVP-KGALLLGPPGCGKT 53
Query: 757 MLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSR 816
+LAKAVATE F + + G VR LF+ AR AP ++IDEID++ +
Sbjct: 54 LLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKK 113
Query: 817 RG------SESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
R S +E E + ++LLV+MDG+ + + V+VLA+TN
Sbjct: 114 RSTTMSGFSNTEEEQTL---NQLLVEMDGMGTTDH----VIVLASTNRA 155
Score = 71.1 bits (175), Expect = 1e-13
Identities = 31/110 (28%), Positives = 51/110 (46%), Gaps = 22/110 (20%)
Query: 215 DI-DEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTH--IASQLDGYSG 269
DI D AL R RL++ ++I LP+ R + + +LK +K+ + +A G+SG
Sbjct: 156 DILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSG 215
Query: 270 ADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALAR 319
ADI N+C +A++ + R V +FE A+ R
Sbjct: 216 ADIANICNEAALHAAREG-------------HTS----VHTLNFEYAVER 248
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET:
ADP; 3.90A {Thermus thermophilus}
Length = 499
Score = 114 bits (288), Expect = 7e-27
Identities = 66/176 (37%), Positives = 90/176 (51%), Gaps = 32/176 (18%)
Query: 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--------GIRRPWKGVLMVGP 750
++ + P + + D+A +AK L+E V EF K G R P KGVL+VGP
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIV-------EFLKNPSRFHEMGARIP-KGVLLVGP 72
Query: 751 PGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEI 810
PG GKT LA+AVA E F S + G VR LFE A+ +AP +FIDEI
Sbjct: 73 PGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEI 132
Query: 811 DSLCSRRGS-------ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
D++ +RGS E E + ++LLV+MDG ++V+AATN P
Sbjct: 133 DAVGRKRGSGVGGGNDERE-----QTLNQLLVEMDGFEKDTA----IVVMAATNRP 179
Score = 66.1 bits (162), Expect = 2e-11
Identities = 31/108 (28%), Positives = 54/108 (50%), Gaps = 20/108 (18%)
Query: 215 DI-DEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGAD 271
DI D AL R R +++I I P GRE +L+I+ + + VDL +A + G+ GAD
Sbjct: 180 DILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGAD 239
Query: 272 ITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALAR 319
+ N+ +A++++ R + + ++ +D EEA R
Sbjct: 240 LENLLNEAALLAAREG-------------RRK----ITMKDLEEAADR 270
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A
{Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB:
2cea_A* 3kds_E*
Length = 476
Score = 112 bits (283), Expect = 2e-26
Identities = 65/173 (37%), Positives = 90/173 (52%), Gaps = 32/173 (18%)
Query: 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFK--------GIRRPWKGVLMVGPPGT 753
N + + D+ +A L+E V EF K G R P KG+L+VGPPGT
Sbjct: 9 GNKRVTFKDVGGAEEAIEELKEVV-------EFLKDPSKFNRIGARMP-KGILLVGPPGT 60
Query: 754 GKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSL 813
GKT+LA+AVA E FF++ S + G VR LF A+ +AP +FIDEID++
Sbjct: 61 GKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAV 120
Query: 814 CSRRGS-------ESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFP 859
RG+ E E + ++LLV+MDG S E ++V+AATN P
Sbjct: 121 GRHRGAGLGGGHDERE-----QTLNQLLVEMDGFDSKEG----IIVMAATNRP 164
Score = 66.8 bits (164), Expect = 1e-11
Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 20/108 (18%)
Query: 215 DI-DEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGAD 271
DI D AL R R +K+I + P GR+ +L+I+ + + V+L IA + G+ GAD
Sbjct: 165 DILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGAD 224
Query: 272 ITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALAR 319
+ N+ +A++++ R +++ ++ +DFEEA+ R
Sbjct: 225 LENLVNEAALLAAREG-------------RDK----ITMKDFEEAIDR 255
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast
structural genomics consortium (NESG), target HR3102A,
PSI-2; NMR {Homo sapiens}
Length = 86
Score = 77.9 bits (193), Expect = 7e-18
Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 17/92 (18%)
Query: 228 IYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRK 287
+ P++ R +LKI+ +++ + ++L IA + G SGA++ VC +A M ++R +
Sbjct: 6 HHHSHPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER 65
Query: 288 IIGLTPEQIRQIPKEELDLPVSQRDFEEALAR 319
+ V+Q DFE A+A+
Sbjct: 66 -------------RVH----VTQEDFEMAVAK 80
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding,
cell cycle, cell division, cytoplas hydrolase,
microtubule; NMR {Mus musculus}
Length = 78
Score = 75.4 bits (185), Expect = 6e-17
Identities = 25/74 (33%), Positives = 43/74 (58%), Gaps = 1/74 (1%)
Query: 437 MTDKYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINN 496
MT I E+ +ARE +L GNYDSA +YYQ VL Q+N+ + ++D +++ W +
Sbjct: 5 MTMSLQMIVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQK-WQQVWQ 63
Query: 497 QLTKEYNEVQRLQS 510
++ E +V+ +
Sbjct: 64 EINVEAKQVKDIMK 77
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.10A {Homo sapiens}
Length = 78
Score = 70.6 bits (174), Expect = 3e-15
Identities = 25/89 (28%), Positives = 46/89 (51%), Gaps = 17/89 (19%)
Query: 231 PLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIG 290
P P++ R +LKI+ +++ + ++L IA + G SGA++ VC +A M ++R +
Sbjct: 1 PPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRER--- 57
Query: 291 LTPEQIRQIPKEELDLPVSQRDFEEALAR 319
+ V+Q DFE A+A+
Sbjct: 58 ----------RVH----VTQEDFEMAVAK 72
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone,
chaperone-protein binding complex; HET: DNA; 3.80A
{Saccharomyces cerevisiae} PDB: 4a3v_B*
Length = 88
Score = 63.8 bits (156), Expect = 9e-13
Identities = 16/83 (19%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
Query: 237 GREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQI 296
GR + +I+ K + V+ + I+ +GA++ +VC +A M ++R +
Sbjct: 5 GRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR--------- 55
Query: 297 RQIPKEELDLPVSQRDFEEALAR 319
++ +++DF +A+ +
Sbjct: 56 ----RKV----ATEKDFLKAVDK 70
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 70.1 bits (171), Expect = 2e-12
Identities = 70/455 (15%), Positives = 142/455 (31%), Gaps = 166/455 (36%)
Query: 15 KSY----NAAKRPQQSTEHSLAENEEIELSIFSAMVDG---FVYIF---GNILTFLT--- 61
K+Y AKRP +S ++F A+ +G V IF GN +
Sbjct: 124 KNYITARIMAKRPFDKKSNS---------ALFRAVGEGNAQLVAIFGGQGNTDDYFEELR 174
Query: 62 ---SKYPSV---FLLPKAIRIGNLTFIFGSEFQSEPVVGSG----TYLKHKSPI-KMNFL 110
Y + + A + L + +E V G +L++ S ++L
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIR---TTLDAEKVFTQGLNILEWLENPSNTPDKDYL 231
Query: 111 SLV---LPLLAEEHGKLKFKE----AITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGP 163
+ PL+ G ++ A L T G + + T + V+
Sbjct: 232 LSIPISCPLI----GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGL----VTA--- 280
Query: 164 TLAVA-----KMFSSLAVQKL-------LRGSKTFRTLCIHKYRLLTFPSTPVQYSIQ-- 209
+A+A + F + + +R + + + P + ++ S++
Sbjct: 281 -VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT--------SLPPSILEDSLENN 331
Query: 210 ----------KGIPWD-----IDEALRRRL--EKRIYIPL---PSK---AG-REAL--LK 243
+ + +++ L K++ I L +G ++L L
Sbjct: 332 EGVPSPMLSISNLTQEQVQDYVNK-TNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 244 INLKEVKVDPAVDLTHI-ASQLDGYSGADITNVCRDASMMSMRRKIIG------------ 290
+ L++ K +D + I S+ RK+
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSE----------------------RKLKFSNRFLPVASPFH 428
Query: 291 ---LTP--EQIRQ--------IPKEELDLPVSQRDFEEA--LARCNKSVAREDLENITVE 335
L P + I + +++ +PV D + L + S++ ++ I
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDIQIPV--YDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 336 RIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLISR 370
+ T +F+ T I+ GP G S
Sbjct: 487 PV--KWETT-----TQFKATHILDF--GP-GGASG 511
Score = 49.7 bits (118), Expect = 4e-06
Identities = 97/611 (15%), Positives = 177/611 (28%), Gaps = 222/611 (36%)
Query: 24 QQSTEHSLAENE---EIELSIFSAMVDGFVYIFGNILTFLTSKY-PSVFLLPKAIRIGNL 79
+ TE A++E EL G L +++S PS + L
Sbjct: 42 PEPTEGFAADDEPTTPAEL-------------VGKFLGYVSSLVEPSKVGQFDQV----L 84
Query: 80 TFIFGSEFQSEPVVGSGTYLK----HKSPIKMNFLSLVLPLLAEEHGKL-KFKEAIT--- 131
EF++ YL+ H +L LL E L K KE I
Sbjct: 85 NLCLT-EFEN-------CYLEGNDIH---------ALAAKLLQENDTTLVKTKELIKNYI 127
Query: 132 LALTVG--------SSLNLYRSITNRG-------F--------YIED----YEVSPPGPT 164
A + +S L+R++ G F Y E+ Y+
Sbjct: 128 TARIMAKRPFDKKSNSA-LFRAV-GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVG 185
Query: 165 LAVAKMFSSLAVQKLLRGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDEALRRRL 224
+ +L +L+R + ++ +G+ +I E L
Sbjct: 186 DLIKFSAETL--SELIRTT----------------LDAEKVFT--QGL--NILEWLEN-- 221
Query: 225 EKRIYIPLPSKA-GREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMS 283
PS ++ LL I + P + + QL Y
Sbjct: 222 --------PSNTPDKDYLLSI---PISC-PLIGVI----QLAHY-----VVTA------- 253
Query: 284 MRRKIIGLTPEQIRQIPKEEL----DLPVSQRDFEEALARCNKSVAREDLENITVERIAP 339
K++G TP ++R K L + A+A ++ + E + I
Sbjct: 254 ---KLLGFTPGELRSYLKGATGHSQGLVTAV-----AIA---ETDSWESFFVSVRKAIT- 301
Query: 340 HMSTIGKKLYLKFQKT-PIVTLATGPVGLISRDNLKH----KSPIKMNFLSLV-LPLLA- 392
+ IG ++ + P +L P I D+L++ SP M LS+ L
Sbjct: 302 VLFFIG----VRCYEAYPNTSLP--P--SILEDSLENNEGVPSP--M--LSISNLTQEQV 349
Query: 393 EEH---GNNGISNDWHKTSALLVCTANHLIRNSVNLSSVT---------AIMVEKIMTDK 440
+++ N+ + LV A +L+ V+ + + K
Sbjct: 350 QDYVNKTNSHLPAGKQ-VEISLVNGAKNLV--------VSGPPQSLYGLNLTLRKAKAPS 400
Query: 441 YAEIAESTTIARESSLTGNYD--SA---CLYYQSVLQQINRIVVELRDNEKQKRHWDHIN 495
+ + R+ + + ++ I +D K ++
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLI------NKDLVKNNVSFNA-- 452
Query: 496 NQLTKEYNEVQRLQSMIRNFGSHNVNDERMLGNS-RPNQFDSIFSSDANNSLEPWVTDPD 554
+ +Q I + + + +D R+L S D I P
Sbjct: 453 ----------KDIQ--IPVYDTFDGSDLRVLSGSISERIVDCII------------RLPV 488
Query: 555 VWPPANDTDPS 565
W +
Sbjct: 489 KWETTTQFKAT 499
Score = 45.8 bits (108), Expect = 8e-05
Identities = 51/297 (17%), Positives = 85/297 (28%), Gaps = 115/297 (38%)
Query: 136 VGSSLNLY------RSITNR---------GFYIEDYEVSPPGPTLAVAKMFSSLAVQKLL 180
G ++LY + + NR GF I D + P +L +
Sbjct: 1629 QGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILD--IVINNPV--------NLTIHFGG 1678
Query: 181 RGSKTFRTLCIHKYRLLTFPSTPVQYSIQKGIPWDIDE---------------------- 218
K R Y + F + + I +I+E
Sbjct: 1679 EKGKRIR----ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQP 1734
Query: 219 -------ALRRRLEKRIYIPLPSK-AGR---E--AL------LKINLKEVKVDPAVDLTH 259
A L+ + IP + AG E AL + I + V++
Sbjct: 1735 ALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSI-------ESLVEVVF 1787
Query: 260 IASQLDGYSGADITNVC-RDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALA 318
Y G + RD S +I + P ++ +EAL
Sbjct: 1788 -------YRGMTMQVAVPRDELGRSNYG-MIAINPGRVAAS----FS--------QEALQ 1827
Query: 319 RCNKSVARED---LE----NI----TVERIAPHMS---TIGKKL-YLKFQKTPIVTL 360
+ V + +E N+ V A + T+ L ++K QK I+ L
Sbjct: 1828 YVVERVGKRTGWLVEIVNYNVENQQYV--AAGDLRALDTVTNVLNFIKLQKIDIIEL 1882
Score = 44.3 bits (104), Expect = 2e-04
Identities = 92/590 (15%), Positives = 169/590 (28%), Gaps = 244/590 (41%)
Query: 350 LK--FQKT---PIVTLA-----TGPVGLISRDNLKHKSPIKMNFLSLVLPLLAEEHGNNG 399
L+ F K P A T P L+ + FL V L+
Sbjct: 33 LQEQFNKILPEPTEGFAADDEPTTPAELVGK------------FLGYVSSLVEPSKVG-- 78
Query: 400 ISNDWHKTSALLVC----TANHLIRNSVNLSSVTAIMVEKIMTD--KYAEIAESTTIARE 453
L +C +L N ++ ++ A ++++ T K E+ ++ AR
Sbjct: 79 -----QFDQVLNLCLTEFENCYLEGNDIH--ALAAKLLQENDTTLVKTKELIKNYITARI 131
Query: 454 SS---LTGNYDSACLYYQSVLQQINRIVV-------------ELRDNEKQKRHWDHINNQ 497
+ +SA L+ ++V + ++V ELRD
Sbjct: 132 MAKRPFDKKSNSA-LF-RAVGEGNAQLVAIFGGQGNTDDYFEELRD-------------- 175
Query: 498 LTKEYNEVQRLQSMIRNFGSHNVNDERMLGN--SRPNQFDSIFSSDANNSLEPWVTDPDV 555
L + Y+ + + +I+ L + +F+ N + W+ +P
Sbjct: 176 LYQTYHVL--VGDLIKFSAET-------LSELIRTTLDAEKVFTQGLN--ILEWLENPSN 224
Query: 556 WPPAN--DTDP-S-----LYQL-H----------TPK---------------------PQ 575
P + + P S + QL H TP
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 576 QTKT---FSKTRKSSI--------------PNKSTPQSN-NSTLKRGNKTPANNKKEPNL 617
+T + F + + +I PN S P S +L+ P+ P L
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPS-----PML 339
Query: 618 GYKSVTYDKV--------------------LKNSSDNENV---------------KNKTK 642
++T ++V L N + N V K K
Sbjct: 340 SISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAP 399
Query: 643 SNNAQGNSNPTNNSNNNNSNNNPGNSNSHDD-KPVMQERRF--------ESYGCDNDL-- 691
S Q + P + K RF L
Sbjct: 400 SGLDQ--------------SRIP-----FSERKLKFS-NRFLPVASPFHSHL-----LVP 434
Query: 692 -VEMLERDMVQKNPNIRWD---------------DIAELTD--AKRLLEEAVVLPM-WMP 732
+++ +D+V+ N+ ++ D+ L+ ++R+++ + LP+ W
Sbjct: 435 ASDLINKDLVKN--NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 733 EFFKGIRRPWKGVLMVGPPGT-GKTMLAKAVATECGTTFFNVCSSTLTSK 781
+L GP G G +L G + + TL
Sbjct: 493 TTQFKATH----ILDFGPGGASGLGVLTHRNKDGTGVRV--IVAGTLDIN 536
Score = 34.6 bits (79), Expect = 0.16
Identities = 39/209 (18%), Positives = 59/209 (28%), Gaps = 66/209 (31%)
Query: 701 QKNPNIRWDDIAELTD-------------AKRLLEEAVVLPMWMPEFFKGI--------- 738
Q N + ++++ +L A+ L E F +G+
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 739 -RRPWKGVLMVGP---PGTGKTMLA--KAVATECGTTFFNVCS--STLTSKYRGESEKLV 790
P K L+ P P G LA A G T + S T G S+ LV
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGAT----GHSQGLV 278
Query: 791 RLLFEMARFYAPSTIFIDEIDSL--CSRR--------GSESEHEASRRVKSELLVQMDGL 840
A A + D +S R+ G +EA + D L
Sbjct: 279 -----TAVAIAET----DSWESFFVSVRKAITVLFFIGVRC-YEAYPNTSLPPSILEDSL 328
Query: 841 SSAE------------DSSKVVMVLAATN 857
+ E +V + TN
Sbjct: 329 ENNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Score = 33.9 bits (77), Expect = 0.29
Identities = 34/218 (15%), Positives = 63/218 (28%), Gaps = 71/218 (32%)
Query: 7 ASMVGILGKSYNAAKRPQQSTEHSLAENEEIELSIF-SAMVDGFVYIFGNILTFLTSKYP 65
+ M+ I + + T L +++E+S+ A V ++ P
Sbjct: 336 SPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA--KNLV---------VSG-PP 383
Query: 66 -SVFLLPKAIRIGNLTFIFGSEFQSE-PVVGSGTYLKHKSPIKMNFLSLVLP----LLAE 119
S++ L +R G + QS P + + K FL + P LL
Sbjct: 384 QSLYGLNLTLR--KAKAPSGLD-QSRIP------FSERKLKFSNRFLPVASPFHSHLLVP 434
Query: 120 ---------EHGKLKFKEAITLALTV-----GSSL---------NLYRSIT--------- 147
+ F A + + V GS L + I
Sbjct: 435 ASDLINKDLVKNNVSFN-AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETT 493
Query: 148 --NRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGS 183
+ +I D+ PG + + + G+
Sbjct: 494 TQFKATHILDFG---PGGASGLGVL-----THRNKDGT 523
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} PDB: 2dzo_B
Length = 82
Score = 62.0 bits (151), Expect = 3e-12
Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 17/82 (20%)
Query: 238 REALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIR 297
R + ++ + P DL + + D SGA I + ++A + ++R+ R
Sbjct: 3 RRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN---------R 53
Query: 298 QIPKEELDLPVSQRDFEEALAR 319
+ + Q D EEA A
Sbjct: 54 YV--------ILQSDLEEAYAT 67
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin,
S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B*
2dvw_B*
Length = 83
Score = 61.9 bits (151), Expect = 3e-12
Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 17/85 (20%)
Query: 235 KAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPE 294
+ + + ++ + VDL ++ D SGADI ++C+++ M+++R
Sbjct: 3 RRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQESGMLAVREN------- 55
Query: 295 QIRQIPKEELDLPVSQRDFEEALAR 319
R I V +DFE+A
Sbjct: 56 --RYI--------VLAKDFEKAYKT 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 68.3 bits (166), Expect = 9e-12
Identities = 101/672 (15%), Positives = 208/672 (30%), Gaps = 229/672 (34%)
Query: 192 HKYRLLTFPSTPVQYSIQKGIP------------WDIDEALRRRLEK------------- 226
H + + F + QY + + D+ + + L K
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV 61
Query: 227 ----RIYIPLPSKAGR------EALLKIN-------LKEVKVDPAVDLTHIASQLDG-YS 268
R++ L SK E +L+IN +K + P++ Q D Y+
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN 121
Query: 269 GADIT---NVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALARCNKSV- 324
+ NV R + +R+ ++ L P + ++ + + + K+
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAK---------NVLI------DGVLGSGKTWV 166
Query: 325 AREDLENITVERIAP---HMSTIGK------------KLYLKFQKTPIVTLATGPVGLIS 369
A + + V+ + KL + S
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN-----------WTS 215
Query: 370 RDNLKHKSPIKMNFLSL---VLPLLAEEHGNNG--ISND-WHKTSA--------LLVCTA 415
R + H S IK+ S+ + LL + N + + + + +L+ T
Sbjct: 216 RSD--HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR 273
Query: 416 NHLIRNSVNLSSVTAIMVEKI---MTD--------KYAEIAESTTIARESSLTGNYDSAC 464
+ + ++ ++ T I ++ +T KY + + RE
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPRE---------VL 323
Query: 465 LYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRLQSMIRNFGSH-NVNDE 523
+ ++++ I +RD +W H+N +L ++I + + +
Sbjct: 324 ---TTNPRRLSIIAESIRDGLATWDNWKHVNC---------DKLTTIIESSLNVLEPAEY 371
Query: 524 RMLGNSRPNQFD--SIFSSDAN---NSLEPWVTDPDVW--PPANDTDPSLYQLHTPKPQQ 576
R FD S+F A+ L +W +D + +LH K
Sbjct: 372 R-------KMFDRLSVFPPSAHIPTILLSL------IWFDVIKSDVMVVVNKLH--KYSL 416
Query: 577 TKTFSKTRKSSIPN----KSTPQSNNSTLKR-------GNKTPANNKKEPN--------- 616
+ K SIP+ N L R KT ++ P
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476
Query: 617 LGYKSVTYDKVLKNSSDNEN-------------VKNKTKSNNAQGNSNPTNNSNNNNSNN 663
+G+ LKN E ++ K + +++ + N
Sbjct: 477 IGHH-------LKNIEHPERMTLFRMVFLDFRFLEQKIR--------------HDSTAWN 515
Query: 664 NPGNSNSHDDKPVMQERRFESYGCDND-----LVEMLERDMVQKNPNI---RWDDIAEL- 714
G+ + + Q + ++ Y CDND LV + + + N+ ++ D+ +
Sbjct: 516 ASGSIL--NT--LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 715 --TDAKRLLEEA 724
+ + + EEA
Sbjct: 572 LMAEDEAIFEEA 583
Score = 57.9 bits (139), Expect = 1e-08
Identities = 39/220 (17%), Positives = 74/220 (33%), Gaps = 52/220 (23%)
Query: 675 PVMQERR----FESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAK------------ 718
V R S ++V+ ++++ N I
Sbjct: 60 AVSGTLRLFWTLLSKQ--EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117
Query: 719 RLLEEAVVLP---MWMPEFFKGIR------RPWKGVLMVGPPGTGKTMLAKAVATECGTT 769
RL + V + + + +R RP K VL+ G G+GKT +A V
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 770 ---FFNVCSSTLTSKYRGES--EKLVRLLFEMARFYAPSTIFIDEIDSLCS-RRGSESEH 823
F + L + E+ E L +LL+++ + D + + S
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI------DPNWTSRSDHSSNIKLRIHSIQ 231
Query: 824 EASRRV------KSELLVQMDGLSSAED------SSKVVM 851
RR+ ++ LLV + + +A+ S K+++
Sbjct: 232 AELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKILL 270
Score = 49.1 bits (116), Expect = 6e-06
Identities = 70/507 (13%), Positives = 139/507 (27%), Gaps = 148/507 (29%)
Query: 86 EFQSEPVV------GSGTYLKHKSPIKMNFLSLVLPLLAEEHGKLKFKEAITLALTVGSS 139
E + V GSG K+ + L + + K I L + +
Sbjct: 146 ELRPAKNVLIDGVLGSG-----KT-------WVALDVCLSYKVQCKMDFKI-FWLNLKNC 192
Query: 140 ----------LNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSSLAVQKLLRGS------ 183
L I D+ + ++ L K
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 184 -------KTF----RTLCIHKYRLLTF---PSTPVQYSIQK-GIPWDIDEALRRRLEKRI 228
F + L +++ +T +T S+ + DE L K +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYL 311
Query: 229 YIP---LPSKAGREALLKINL--KEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMS 283
LP + ++++ + ++ A D + +V D
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLA--------TWDNWK-----HVNCDKLTTI 358
Query: 284 MRRKIIGLTPEQIRQ-------------IPKEELDL---PVSQRDFEEALARC-NKSVAR 326
+ + L P + R+ IP L L V + D + + S+
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 327 EDLENITVERIAPHMSTIGKKLYLKFQKTPIVTLATGPVGLISRDNLK--HKSPIKMNFL 384
+ + T+ I +YL+ + +N H+S +
Sbjct: 419 KQPKESTI-SI--PS------IYLELKVK--------------LENEYALHRSIVD---- 451
Query: 385 SLVLPLLAEEHGNNGISND----WHKTSALLVCTANHL--IRNSVNLSSVTAI------M 432
+P + D H +HL I + ++ + +
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSH--------IGHHLKNIEHPERMTLFRMVFLDFRFL 503
Query: 433 VEKIMTDKYAEIAESTTIARESSLTGNYDS----ACLYYQSVLQQINRIVVELRDNEKQK 488
+KI D A A + + L Y Y+ ++ I + ++ +N
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLK-FYKPYICDNDPKYERLVNAILDFLPKIEENLICS 562
Query: 489 RHWDHINNQLTKE----YNE----VQR 507
++ D + L E + E VQR
Sbjct: 563 KYTDLLRIALMAEDEAIFEEAHKQVQR 589
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 57.7 bits (139), Expect = 8e-09
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 11/114 (9%)
Query: 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVA 763
+ +A+ V E K + + VL+ GPPGTGKT LA A+A
Sbjct: 32 AKQAASGLVGQENAREACGVIV-------ELIKSKKMAGRAVLLAGPPGTGKTALALAIA 84
Query: 764 TECG--TTFFNVCSSTLTSKYRGESEKLVRLLFE--MARFYAPSTIFIDEIDSL 813
E G F + S + S ++E L+ R ++ E+ L
Sbjct: 85 QELGSKVPFCPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTEL 138
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 53.2 bits (127), Expect = 1e-07
Identities = 26/140 (18%), Positives = 45/140 (32%), Gaps = 13/140 (9%)
Query: 690 DLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEE---AVVLPMWMPEFFKGIRRPWKGVL 746
DL E ++ ++ L K + E +++ + P +
Sbjct: 12 DLRAEYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMS 71
Query: 747 MVGPPGTGKTMLAKAVATEC-------GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARF 799
G PGTGKT +A +A +V L +Y G + + + + A
Sbjct: 72 FTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM- 130
Query: 800 YAPSTIFIDEIDSLCSRRGS 819
+FIDE L
Sbjct: 131 --GGVLFIDEAYYLYRPDNE 148
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 49.5 bits (119), Expect = 4e-06
Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
Query: 749 GPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMA---RFYAPSTI 805
GPPGTGKT LA+ +A + S +TS G E +R E A R TI
Sbjct: 57 GPPGTGKTTLAEVIARYANADVERI--SAVTS---GVKE--IREAIERARQNRNAGRRTI 109
Query: 806 -FIDEI 810
F+DE+
Sbjct: 110 LFVDEV 115
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 48.0 bits (115), Expect = 6e-06
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT-SKYRG--ESEKLVRLLF--EMA 797
K +LM+GP G GKT +A+ +A F V ++ T Y G + L A
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGA 110
Query: 798 RFYAPST--IFIDEIDSLCSRRGSESEHEASRR-VKSELL 834
+FIDEID +C + + SR V+ +LL
Sbjct: 111 IDAVEQNGIVFIDEIDKICKKGEYSG-ADVSREGVQRDLL 149
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 48.2 bits (115), Expect = 7e-06
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 12/48 (25%)
Query: 716 DAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVA 763
D K L V P GI GVL+ G GTGK+ +A+A
Sbjct: 31 DMKLALLLTAVDP--------GIG----GVLVFGDRGTGKSTAVRALA 66
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 40.4 bits (95), Expect = 6e-04
Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 13/76 (17%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATEC------GTTFFNVCS--STLTSKYRGESEKLVRLLF 794
KG+ VG PG GKT LA A FF+ L +
Sbjct: 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDT-----K 93
Query: 795 EMARFYAPSTIFIDEI 810
+ + +D++
Sbjct: 94 FLKTVLNSPVLVLDDL 109
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 41.8 bits (98), Expect = 9e-04
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECG 767
+ ++ GPPG GKT A VA E G
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELG 102
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural
genomics, center for structural genomics; 2.80A
{Escherichia coli}
Length = 145
Score = 39.4 bits (93), Expect = 0.001
Identities = 13/102 (12%), Positives = 31/102 (30%), Gaps = 40/102 (39%)
Query: 730 WMPEFFKGIRR------PWKGVLMVGPPGTGKTMLAKA------------VATECGTTFF 771
W+ ++ + +++ V + G PGTG+ A+ V E
Sbjct: 9 WINQYRRRLQQLSETDIA---VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTP--- 62
Query: 772 NVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSL 813
++ + +A+ T+ + + L
Sbjct: 63 -------------DNAPQLNDFIALAQ---GGTLVLSHPEHL 88
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 39.5 bits (92), Expect = 0.002
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 737 GIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFF 771
G++ P +++ G P TGKT L++A+AT
Sbjct: 1 GMQTP-ALIIVTGHPATGKTTLSQALATGLRLPLL 34
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 39.7 bits (93), Expect = 0.004
Identities = 7/19 (36%), Positives = 14/19 (73%)
Query: 745 VLMVGPPGTGKTMLAKAVA 763
V ++GPPG K+++A+ +
Sbjct: 44 VFLLGPPGIAKSLIARRLK 62
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 37.2 bits (87), Expect = 0.017
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTF 770
+L+ GPPG GKT LA +A E G
Sbjct: 41 LLLFGPPGLGKTTLAHVIAHELGVNL 66
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 37.2 bits (87), Expect = 0.018
Identities = 14/26 (53%), Positives = 17/26 (65%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTF 770
VL+ GPPG GKT LA +A+E T
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNI 79
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 36.2 bits (83), Expect = 0.020
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775
+L+ G PG+GK+ +A+A+A G + S
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPGVPKVHFHS 42
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 37.4 bits (87), Expect = 0.023
Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 4/99 (4%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
VL++G PGTGK+ML +A+A T + ++ + R
Sbjct: 63 VLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPED-ENMPRIKTVPACQGRRIVEKY 121
Query: 805 IFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSA 843
+ S + S + +LLV G + A
Sbjct: 122 REKAKSQ---ESVKSSNMRLKSTVLVPKLLVDNCGRTKA 157
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 36.9 bits (86), Expect = 0.026
Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 10/75 (13%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT-SKYRGES-EK-LVRLL----FEMA 797
+L++GP G+GKT++A+ +A +++LT + Y GE E L RLL + +
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 134
Query: 798 RFYAPSTI-FIDEID 811
+ A I FIDEID
Sbjct: 135 K--AQKGIVFIDEID 147
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 36.8 bits (86), Expect = 0.027
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTF 770
+L GP G GKT LA ++ E
Sbjct: 58 ILFSGPAGLGKTTLANIISYEMSANI 83
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 37.2 bits (86), Expect = 0.028
Identities = 15/81 (18%), Positives = 30/81 (37%), Gaps = 11/81 (13%)
Query: 743 KGVLMVGPPGTGKTMLAKAV-----ATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMA 797
+ +++ GPPG+GKTM + E + F+ ++ + +
Sbjct: 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGE 1364
Query: 798 RFYAPS------TIFIDEIDS 812
P+ +F DEI+
Sbjct: 1365 TVLRPTQLGKWLVVFCDEINL 1385
Score = 31.4 bits (71), Expect = 1.7
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Query: 738 IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKY 782
R+P L++G G GK++L++ VA G + + + + + Y
Sbjct: 1642 FRQPQGHALLIGVSGGGKSVLSRFVAWMNGLSIYTI---KVNNNY 1683
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 35.4 bits (82), Expect = 0.037
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATE 765
KG+ + G G GKT L A+A E
Sbjct: 55 KGLYLHGSFGVGKTYLLAAIANE 77
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 36.4 bits (85), Expect = 0.038
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT-SKYRGES-EK-LVRLL----FEMA 797
+L++GP G+GKT+LA+ +A F ++TLT + Y GE E + +LL +++
Sbjct: 54 ILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQ 113
Query: 798 RFYAPSTI-FIDEID 811
+ A I +ID+ID
Sbjct: 114 K--AQRGIVYIDQID 126
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 36.2 bits (83), Expect = 0.042
Identities = 20/140 (14%), Positives = 45/140 (32%), Gaps = 36/140 (25%)
Query: 745 VLMVGPPGTGKTMLAKAVATECG------------------------TTFFNVCSSTLTS 780
+ + G GTGKT + K V ++ +
Sbjct: 48 IFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPF 107
Query: 781 KYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGL 840
+E RL+ + + + I +DEID+ + ++L ++ +
Sbjct: 108 TGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN------------DDILYKLSRI 155
Query: 841 SSAEDSSKVVMVLAATNFPW 860
+S + SK+ + + +
Sbjct: 156 NSEVNKSKISFIGITNDVKF 175
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 36.0 bits (83), Expect = 0.049
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATEC 766
KG+ + G G GK+ L A+A E
Sbjct: 153 KGLYLYGDMGIGKSYLLAAMAHEL 176
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 35.0 bits (80), Expect = 0.053
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 728 PMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773
P+ PEF +L+ G PG GKT L K +A++ G + NV
Sbjct: 2 PLGSPEFMLLPN-----ILLTGTPGVGKTTLGKELASKSGLKYINV 42
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 35.9 bits (82), Expect = 0.054
Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 31/107 (28%)
Query: 745 VLMVGPPGTGKTMLAKAVATE-------------CGTTFFNVCSSTLTSKY--------- 782
L +G GTGKT ++K + E + N C +
Sbjct: 48 NLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN-CREVGGTPQAVLSSLAGK 106
Query: 783 --------RGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSES 821
G + + + I++DE+D+L RRG +
Sbjct: 107 LTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDI 153
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase,
nucleotide-binding, Pro serine protease, stress
response; HET: ADP; 3.40A {Bacillus subtilis} PDB:
1x37_A
Length = 543
Score = 35.6 bits (83), Expect = 0.076
Identities = 11/16 (68%), Positives = 13/16 (81%)
Query: 748 VGPPGTGKTMLAKAVA 763
GPPG GKT LAK++A
Sbjct: 114 AGPPGVGKTSLAKSIA 129
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 35.2 bits (82), Expect = 0.080
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTF 770
+L+ G PG KT+ +A F
Sbjct: 49 ILLEGVPGLAKTLSVNTLAKTMDLDF 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 35.2 bits (80), Expect = 0.095
Identities = 15/138 (10%), Positives = 37/138 (26%), Gaps = 35/138 (25%)
Query: 745 VLMVGPPGTGKTMLAKAVATE----CGTTFFNVCSSTLTSKYR----------------- 783
++G PGTGKT+ + + F + +
Sbjct: 47 ATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRG 106
Query: 784 -GESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSS 842
E L L+ + + +D+ +L +++ +
Sbjct: 107 LSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPD-------------ILSTFIRLGQEAD 153
Query: 843 AEDSSKVVMVLAATNFPW 860
+ ++ +V+ N
Sbjct: 154 KLGAFRIALVIVGHNDAV 171
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 34.1 bits (79), Expect = 0.12
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 746 LMVGPPGTGKTMLAKAVATE 765
L GPPGTGKT A A+A +
Sbjct: 42 LFSGPPGTGKTATAIALARD 61
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian
virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A
2h1l_A
Length = 377
Score = 34.6 bits (79), Expect = 0.12
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 3/41 (7%)
Query: 734 FFKGIRRPWK-GVLMVGPPGTGKTMLAKAVATECGTTFFNV 773
I P K L GP +GKT LA A+ CG NV
Sbjct: 162 MVYNI--PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV 200
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 33.6 bits (76), Expect = 0.14
Identities = 4/35 (11%), Positives = 14/35 (40%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779
+++ G GK+ + + + + + +L
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 33.6 bits (77), Expect = 0.15
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 745 VLMVGPPGTGKTMLAKAVATE 765
+L +G PG+GK+ A+ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAK 25
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 33.9 bits (77), Expect = 0.19
Identities = 10/32 (31%), Positives = 13/32 (40%), Gaps = 6/32 (18%)
Query: 745 VLMVGPPGTGKTML----AKAVATECGTTFFN 772
+V P G GK+ML A +A G
Sbjct: 33 GALVSPGGAGKSMLALQLAAQIAG--GPDLLE 62
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 33.9 bits (77), Expect = 0.21
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 745 VLMVGPPGTGKTMLAKAVATE 765
+L +G PG+GK+ A+ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAK 25
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 33.2 bits (76), Expect = 0.22
Identities = 14/94 (14%), Positives = 24/94 (25%), Gaps = 9/94 (9%)
Query: 749 GPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTI--- 805
G PG+GK+ L+ +A + + R L + R AP T
Sbjct: 29 GAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGL--LPRKGAPETFDFE 86
Query: 806 ----FIDEIDSLCSRRGSESEHEASRRVKSELLV 835
+ + + V
Sbjct: 87 GFQRLCHALKHQERVIYPLFDRARDIAIAGAAEV 120
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 33.7 bits (76), Expect = 0.23
Identities = 22/139 (15%), Positives = 42/139 (30%), Gaps = 33/139 (23%)
Query: 749 GPPGTGKTMLAKAVATE-----------CGTTFFNVCSST--------------LTSKYR 783
G G GKT LAK + N ++ + R
Sbjct: 59 GRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVR 118
Query: 784 GES--EKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLS 841
G + L L+ + + +DE S+ S + LL + +
Sbjct: 119 GAPALDILKALVDNLYVENHYLLVILDEFQSMLSSP------RIAAEDLYTLLRVHEEIP 172
Query: 842 SAEDSSKVVMVLAATNFPW 860
S + +++ +L A++
Sbjct: 173 SRDGVNRIGFLLVASDVRA 191
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 34.0 bits (78), Expect = 0.24
Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 743 KGVLMVGPPGTGKTMLAKAV--ATECGTTFFNVCSSTLTSK--YRGESEKLVRLLFEMAR 798
+G+++ GPPG+GKTM+ + S T++ +
Sbjct: 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGL 1327
Query: 799 FYAPS------TIFIDEID 811
P +F DEI+
Sbjct: 1328 TLLPKSDIKNLVLFCDEIN 1346
Score = 32.5 bits (74), Expect = 0.81
Identities = 7/22 (31%), Positives = 11/22 (50%), Gaps = 4/22 (18%)
Query: 744 GVLMVGPPGTGKT----MLAKA 761
+++VG G GKT + A
Sbjct: 925 ALILVGKAGCGKTATWKTVIDA 946
Score = 32.1 bits (73), Expect = 1.1
Identities = 9/45 (20%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 738 IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKY 782
+++ ++++G TGKT+L + VA G +
Sbjct: 1605 LKQVQGHMMLIGASRTGKTILTRFVAWLNGLKIVQP---KIHRHS 1646
Score = 30.6 bits (69), Expect = 3.1
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 7/34 (20%)
Query: 749 GPPGTGKT----MLAKAVATECGTTFFNVCSSTL 778
GP GTGKT + + FN C +
Sbjct: 652 GPAGTGKTETVKAFGQNLGRVV--VVFN-CDDSF 682
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 33.3 bits (76), Expect = 0.24
Identities = 13/81 (16%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFN--VCSSTLT----SKYRGESEKLVR-LLFEMA 797
+++ G PG GK+ +K +A + V S L ++ + E+ ++ + +
Sbjct: 7 IILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLI 66
Query: 798 RFYAPSTIFIDEIDSLCSRRG 818
+ I +D
Sbjct: 67 DSALKNYWVI--VDDTNYYNS 85
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 32.8 bits (74), Expect = 0.26
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAP 802
+ V + GPPG GKT L + ++ V T + R + R+ F++
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVD-GFYTEEVR---QGGRRIGFDVVTLSGT 57
Query: 803 STIF 806
Sbjct: 58 RGPL 61
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 33.5 bits (77), Expect = 0.26
Identities = 12/20 (60%), Positives = 14/20 (70%)
Query: 746 LMVGPPGTGKTMLAKAVATE 765
L GPPGTGKT A A+A +
Sbjct: 42 LFSGPPGTGKTATAIALARD 61
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.28
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 20/46 (43%)
Query: 127 KEAITLALTVGSSLNLYRSITNRGFYIEDYEVSP-PGPTLAV-AKM 170
K+A+ L +SL LY + P LA+ A M
Sbjct: 19 KQALK-KLQ--ASLKLY---------------ADDSAPALAIKATM 46
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 32.6 bits (75), Expect = 0.29
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFF 771
++VG PG+GK+ + + +A G
Sbjct: 5 AVLVGLPGSGKSTIGRRLAKALGVGLL 31
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 33.2 bits (75), Expect = 0.30
Identities = 19/97 (19%), Positives = 34/97 (35%)
Query: 749 GPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFID 808
G+G ++ K +A E G F++ L S+ E+ RL E A +
Sbjct: 21 REYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQFFRLADEKAGNNLLYRLGGG 80
Query: 809 EIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAED 845
L S+ + + + M L+ +E
Sbjct: 81 RKIDLHSKPSPNDKLTSPENLFKFQSEVMRELAESEP 117
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 32.8 bits (74), Expect = 0.31
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 745 VLMVGPPGTGKTMLAKAVATEC 766
+L+ G PGTGKT +A+ +A E
Sbjct: 13 ILITGTPGTGKTSMAEMIAAEL 34
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 33.1 bits (76), Expect = 0.33
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 746 LMVGPPGTGKTMLAKAVATE 765
L GPPG GKT A A+A E
Sbjct: 50 LFAGPPGVGKTTAALALARE 69
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 32.2 bits (74), Expect = 0.39
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFF 771
+ MVG G G T + + +A G F
Sbjct: 5 IFMVGARGCGMTTVGRELARALGYEFV 31
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 32.0 bits (73), Expect = 0.44
Identities = 6/27 (22%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFF 771
+L GP K+ +A ++ E
Sbjct: 5 ILE-GPDCCFKSTVAAKLSKELKYPII 30
>2q86_A Valpha14 TCR; INKT cells, TCR, glycolipid recognition, innate
immunity, IM system; HET: NAG BMA MAN FUC; 1.85A {Mus
musculus} PDB: 3quy_C* 3o9w_C* 3qux_C* 3o8x_C* 3quz_C*
3rtq_C* 3rzc_C* 3ta3_C* 3tvm_C* 3qi9_C* 3ard_C* 3are_C*
3arf_C* 3arg_C* 3he6_C* 3he7_C* 3arb_C* 3scm_C* 3sda_C*
3sdc_C* ...
Length = 229
Score = 32.0 bits (72), Expect = 0.56
Identities = 22/129 (17%), Positives = 42/129 (32%), Gaps = 5/129 (3%)
Query: 539 SSDANNSLEPW-VTDPDVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSN 597
S T V P + +P++YQL P+ Q + T + P++
Sbjct: 91 VVGDRGSALFGSGTQLIVIPYIQNPEPAVYQLKDPRSQDSTLCLFTDFD--SQINVPKTM 148
Query: 598 NSTLKRGNKTPANNKKEPNLGYKSVTYDKVLK-NSSDNENVKNKTKSNN-AQGNSNPTNN 655
S +K + K + ++ + D N T ++ ++ T
Sbjct: 149 ESGTFITDKCVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPCDATLTEK 208
Query: 656 SNNNNSNNN 664
S + N N
Sbjct: 209 SFETDMNLN 217
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 31.6 bits (71), Expect = 0.66
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 730 WMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFN 772
+ E R P V+M G G+GK+ + +A+A CG F
Sbjct: 7 YKSEAAAVRRFPGSIVVM-GVSGSGKSSVGEAIAEACGYPFIE 48
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 32.6 bits (75), Expect = 0.68
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 16/79 (20%)
Query: 746 LMVGPPGTGKTM----LAKAVATE------CGTTFFNVCSSTLT--SKYRGESEK-LVRL 792
L+VG G GKT LA + T +++ +L +KYRG+ EK L
Sbjct: 211 LLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKAL 270
Query: 793 LFEMARFYAPSTI-FIDEI 810
L ++ + ++I FIDEI
Sbjct: 271 LKQLEQ--DTNSILFIDEI 287
Score = 30.7 bits (70), Expect = 2.3
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 735 FKGIRRPWKGVLMVGPPGTGKTMLAKAVATECG 767
+P L GP G GKT + ++ G
Sbjct: 481 LGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 31.3 bits (72), Expect = 0.79
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFF 771
+ + +VGP G GK+ + + +A + F+
Sbjct: 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
translocation, nucleotide-binding, DNA-binding; 3.00A
{Bovine papillomavirus type 1} PDB: 2gxa_A*
Length = 305
Score = 31.8 bits (72), Expect = 0.88
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777
+ +GPP TGK+ML ++ G + + +
Sbjct: 129 LAFIGPPNTGKSMLCNSLIHFLGGSVLSFANHK 161
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 31.8 bits (73), Expect = 0.88
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVA 763
RP L +GP G GKT LAK +A
Sbjct: 44 NRPIGSFLFLGPTGVGKTELAKTLA 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 32.2 bits (74), Expect = 0.94
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVA 763
+RP + +GP G GKT LA+A+A
Sbjct: 518 KRPIGSFIFLGPTGVGKTELARALA 542
>2fh5_B SR-beta, signal recognition particle receptor beta subunit;
endomembrane targeting, GTPase, GAP, longin domain,
SEDL, transport protein; HET: GTP; 2.45A {Mus musculus}
SCOP: c.37.1.8 PDB: 2go5_2
Length = 214
Score = 31.2 bits (71), Expect = 0.95
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 27/127 (21%)
Query: 745 VLMVGPPGTGKT-MLAKAVATECGTTF----FNVCSSTLTSKYRGESEKLV------RLL 793
VL VG +GKT + + + + T + + + RG S L+ L
Sbjct: 10 VLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDSSAIYKV-NNNRGNSLTLIDLPGHESLR 68
Query: 794 FEMARFYAPST---IFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVV 850
F++ + S +F+ +DS +R + +E L Q+ L +
Sbjct: 69 FQLLDRFKSSARAVVFV--VDSAAFQREVKD--------VAEFLYQV--LIDSMALKNSP 116
Query: 851 MVLAATN 857
+L A N
Sbjct: 117 SLLIACN 123
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 31.1 bits (70), Expect = 0.99
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 745 VLMVGPPGTGKTMLAKAVATECG 767
+++ G PG GKT L K + G
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLG 25
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 31.6 bits (71), Expect = 1.0
Identities = 11/67 (16%), Positives = 23/67 (34%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
L++G GK+ L +A E + + E + L ++ F +
Sbjct: 34 TLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPFQKFQS 93
Query: 805 IFIDEID 811
F ++
Sbjct: 94 KFKISLN 100
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM:
PF02562, ST genomics, PSI-2, protein structure
initiative; 2.35A {Corynebacterium glutamicum atcc
13032}
Length = 208
Score = 31.0 bits (71), Expect = 1.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 748 VGPPGTGKTMLAKAVA 763
+GP G+GKT LA A A
Sbjct: 28 LGPAGSGKTYLAMAKA 43
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia
chrysanthemi} SCOP: b.80.1.9
Length = 400
Score = 31.7 bits (71), Expect = 1.1
Identities = 17/77 (22%), Positives = 22/77 (28%)
Query: 596 SNNSTLKRGNKTPANNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNN 655
N + A N LG + + S NV NN G NN
Sbjct: 228 FRNGINYWNDSAFAGNGNGFKLGGNQAVGNHRITRSVAFGNVSKGFDQNNNAGGVTVINN 287
Query: 656 SNNNNSNNNPGNSNSHD 672
++ N N SN
Sbjct: 288 TSYKNGINYGFGSNVQS 304
>2xdq_A Light-independent protochlorophyllide reductase S; oxidoreductase,
DPOR, (bacterio)chlorophyll biosynthesis,
photosynthesis; 2.40A {Thermosynechococcus elongatus}
Length = 460
Score = 31.7 bits (71), Expect = 1.1
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 16/90 (17%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSK----YRGESEKLVRLLFEMARFY 800
L++G G + + L + E+L RL E+ R
Sbjct: 39 FLVIGTKTCG--YFLQNAMGVMIFAEPRYAMAELEEGDISAQLNDYEELKRLCLEIKRDR 96
Query: 801 APSTIFI----------DEIDSLCSRRGSE 820
PS I +++ L + +E
Sbjct: 97 NPSVIVWIGTCTTEIIKMDLEGLAPKLEAE 126
>3zxn_A RSBS, anti-sigma-factor antagonist (STAS) domain protei;
transcription, gene regulation; 1.90A {Moorella
thermoacetica} PDB: 2vy9_A 3ztb_A*
Length = 123
Score = 30.0 bits (68), Expect = 1.1
Identities = 11/75 (14%), Positives = 31/75 (41%), Gaps = 3/75 (4%)
Query: 255 VDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLP--VSQRD 312
+D++ + +D + + + R A ++ + + G+ P + + LDL + +
Sbjct: 48 IDISAL-EVVDEFVTRVLIEISRLAELLGLPFVLTGIKPAVAITLTEMGLDLRGMATALN 106
Query: 313 FEEALARCNKSVARE 327
++ L + E
Sbjct: 107 LQKGLDKLKNLARME 121
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Length = 235
Score = 31.1 bits (71), Expect = 1.3
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 745 VLMVGPPGTGKTMLA 759
+ + G PGTGKT+ +
Sbjct: 26 IALTGEPGTGKTIFS 40
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 31.2 bits (70), Expect = 1.3
Identities = 15/100 (15%), Positives = 25/100 (25%), Gaps = 14/100 (14%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTS--------KYRGESEKLVRLLFEM 796
+V GT + AV S + R +
Sbjct: 122 TAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRCLDLFKDPQTAH 181
Query: 797 ARFYAPSTI----FIDEIDSLCSRRGSESEHEASRRVKSE 832
R +PST F+ L + S + + + S
Sbjct: 182 KRRGSPSTFDSNNFLQLCKIL--AKTSLCKVSSHHKFYST 219
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 30.6 bits (70), Expect = 1.4
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFF 771
++ + ++G G GKT + +A +
Sbjct: 2 KKNLTNIYLIGLMGAGKTSVGSQLAKLTKRILY 34
>1oga_D T-cell receptor alpha chain V region, beta-2-microglobulin; immune
system/receptor, immune system/receptor/complex, TCR,
MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.2 PDB: 2xna_A 2xn9_A 2vlm_D 2vlk_D
2vlj_D 2vlr_D 2cdf_A 2wbj_C* 3qdm_D 3qeq_D
Length = 215
Score = 30.7 bits (69), Expect = 1.4
Identities = 22/124 (17%), Positives = 40/124 (32%), Gaps = 22/124 (17%)
Query: 553 PDVWPPANDTDPSLYQLHTPKPQQT-----KTFSKTRKSSIPNKSTPQSNNSTLKRGNKT 607
V P + DP++YQL K F + QS +S + +KT
Sbjct: 106 LSVKPNIQNPDPAVYQLRDSKSSDKSVCLFTDFD-------SQTNVSQSKDSDVYITDKT 158
Query: 608 PANNKKEPNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNPTNNSNNNNSNNNPGN 667
+ ++ +KS + S +N + P + + N+ G
Sbjct: 159 VLD---MRSMDFKSNSAVAWSNKSD-------FACANAFNNSIIPEDTFFPSPENDGGGC 208
Query: 668 SNSH 671
+ H
Sbjct: 209 KHHH 212
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein
transport, biosynthetic protein; HET: GNP; 3.00A
{Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Length = 296
Score = 30.8 bits (70), Expect = 1.7
Identities = 9/95 (9%), Positives = 31/95 (32%), Gaps = 6/95 (6%)
Query: 664 NPGNSNSHDDKPVMQE--RRFESYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLL 721
++ +++ + + G + +++ + + L
Sbjct: 29 GDFSAYQSVLPEPLRKAEKLLQETGIKESTKTNTLKKLLRFSVEAGGLTEENV---VGKL 85
Query: 722 EEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKT 756
+E + + + ++ K +++ G G GKT
Sbjct: 86 QEILCDMLPSADKWQEPIHS-KYIVLFGSTGAGKT 119
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP;
2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB:
3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A*
3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Length = 525
Score = 31.0 bits (70), Expect = 1.7
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 745 VLMVGPPGTGKTMLAKAVATE 765
+L G GTGKT+L
Sbjct: 284 ILATGATGTGKTLLVSRFVEN 304
Score = 30.3 bits (68), Expect = 3.3
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 745 VLMVGPPGTGKTMLA 759
L+ G GTGKT+ +
Sbjct: 42 TLVSGTSGTGKTLFS 56
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein
structure initiative; HET: SO4 GOL; 1.49A {Clostridium
acetobutylicum atcc 824}
Length = 196
Score = 30.5 bits (69), Expect = 1.7
Identities = 6/43 (13%), Positives = 11/43 (25%), Gaps = 6/43 (13%)
Query: 282 MSMRRKIIGLTP-----EQIRQIPKE-ELDLPVSQRDFEEALA 318
MS+ KI ++ ++ E A
Sbjct: 1 MSLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASK 43
>3mbe_C I-AG7; T cell receptor, histocompatability antigen, MHC class II, I
immune system; HET: NAG; 2.89A {Mus musculus}
Length = 229
Score = 30.4 bits (68), Expect = 1.8
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 555 VWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKSTPQSNNSTLKRGNKTPANNKKE 614
V P + +P++YQL P+ Q + T + P++ S +K + K
Sbjct: 108 VKPNIQNPEPAVYQLKDPRSQDSTLCLFTDFD--SQINVPKTMESGTFITDKCVLDMKAM 165
Query: 615 PNLGYKSVTYDK 626
+ ++ +
Sbjct: 166 DSKSNGAIAWSN 177
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA
degradation, allosteric REGU; HET: ADP 1PE; 2.40A
{Saccharomyces cerevisiae}
Length = 802
Score = 31.1 bits (70), Expect = 1.8
Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 11/98 (11%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTF---FNVCSST------LTSKYRGESEKLVRLLFE 795
L+ GPPGTGKT+ + + VC+ + L +K R K+VRL +
Sbjct: 378 SLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKVVRLTAK 437
Query: 796 MARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSEL 833
S + + + RG++ E + ++K E+
Sbjct: 438 SREDVESSVSNLALHNLVG--RGAKGELKNLLKLKDEV 473
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 30.6 bits (68), Expect = 1.9
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCS 775
+L+ G G GKT + + E +
Sbjct: 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDG 65
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer,
structural genomics; HET: ADP; 2.00A {Pyrococcus
horikoshii}
Length = 247
Score = 30.4 bits (69), Expect = 2.0
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 745 VLMVGPPGTGKTMLA 759
VL+ G PGTGKT+ +
Sbjct: 26 VLLSGGPGTGKTIFS 40
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 30.0 bits (67), Expect = 2.2
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFF 771
P + V+++G G+GKT +A VA E G F
Sbjct: 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA 58
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P,
endocytosis/exocytosis complex; 2.85A {Saccharomyces
cerevisiae} SCOP: a.118.17.2
Length = 235
Score = 30.0 bits (67), Expect = 2.5
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 302 EELDLPVSQRDFEEALARCNK 322
EE+D+ +++ FE A+
Sbjct: 23 EEIDIELARLRFESAVETLLD 43
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 30.6 bits (69), Expect = 2.7
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPW----KGVLMVGPPGTGKT 756
R+ + +L + + G+ P + +L+ G GTGK+
Sbjct: 16 RFLRGTRIVSGGKL--KRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKS 67
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 30.6 bits (70), Expect = 2.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVA 763
RP L +GP G GKT LAK +A
Sbjct: 585 NRPIGSFLFLGPTGVGKTELAKTLA 609
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 29.5 bits (66), Expect = 2.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 745 VLMVGPPGTGKTMLAKAVA 763
++ GP G GK+ K +A
Sbjct: 5 YIITGPAGVGKSTTCKRLA 23
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function;
HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Length = 251
Score = 29.9 bits (67), Expect = 2.9
Identities = 9/15 (60%), Positives = 10/15 (66%)
Query: 745 VLMVGPPGTGKTMLA 759
VL+ G GTGKT A
Sbjct: 33 VLLTGGTGTGKTTFA 47
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 30.1 bits (68), Expect = 2.9
Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 8/84 (9%)
Query: 214 WDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQ-LDGYSGADI 272
++ R I R L + L+ I + Y+ A
Sbjct: 150 VPLEALAHR-------IAAVGTGSRPLLHDDESGDTYTAALNRLSTIWDARGEAYTKASA 202
Query: 273 TNVCRDASMMSMRRKIIGLTPEQI 296
+ ++ R + LTP +I
Sbjct: 203 RVSLENITLKLGYRSVSDLTPAEI 226
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase,
ATP-binding, microtubule INT and trafficking domain,
nucleotide-binding; HET: SRT; 2.40A {Sulfolobus
solfataricus} PDB: 2v6y_B*
Length = 83
Score = 28.1 bits (62), Expect = 2.9
Identities = 10/61 (16%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 458 GNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNE-VQRLQSMIRNFG 516
G + A YY+ ++ +++I+V ++ + + Q+ EY + + L+ ++
Sbjct: 25 GKVEDAITYYKKAIEVLSQIIVLYPESVARTAY-----EQMINEYKKRISYLEKVLPASS 79
Query: 517 S 517
Sbjct: 80 D 80
>3ice_A Transcription termination factor RHO; transcription, ATPase,
hexamer, helicase, RNA, RECA, OB fold ATP-binding,
hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli
k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Length = 422
Score = 30.3 bits (69), Expect = 2.9
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 746 LMVGPPGTGKTMLAKAVA 763
L+V PP GKTML + +A
Sbjct: 178 LIVAPPKAGKTMLLQNIA 195
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA
capture mechanism, ATP-binding, hydrolase,
nucleotide-binding, RN binding; 2.35A {Thermotoga
maritima}
Length = 427
Score = 30.3 bits (69), Expect = 3.3
Identities = 8/18 (44%), Positives = 12/18 (66%)
Query: 746 LMVGPPGTGKTMLAKAVA 763
++V PP GKT + K +A
Sbjct: 179 MIVAPPKAGKTTILKEIA 196
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 30.1 bits (68), Expect = 3.3
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 745 VLMVGPPGTGKTMLAKAVATE 765
+L GPPGTGKT A+A E
Sbjct: 49 LLFYGPPGTGKTSTIVALARE 69
>3iee_A Putative exported protein; YP_212931.1, hypothetical protein BF3319
from bacteroides FR structural genomics; HET: MSE; 1.70A
{Bacteroides fragilis nctc 9343}
Length = 270
Score = 29.9 bits (66), Expect = 3.7
Identities = 14/88 (15%), Positives = 38/88 (43%)
Query: 418 LIRNSVNLSSVTAIMVEKIMTDKYAEIAESTTIARESSLTGNYDSACLYYQSVLQQINRI 477
+++ +NL + M + K AE+ + A++ + ++ YQ+ L Q+
Sbjct: 181 TMQSILNLYARKHRMDGPRIDLKVAELTKQLDAAKKLPVVNGHEGEMKSYQAFLSQVETF 240
Query: 478 VVELRDNEKQKRHWDHINNQLTKEYNEV 505
+ +++ ++ + D + LT +
Sbjct: 241 IKQVKKVREKGEYSDADYDMLTSAFETS 268
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 29.1 bits (66), Expect = 3.9
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 748 VGPPGTGKTMLAKAVATECGTTFF 771
+G G+GK+ LA+ +
Sbjct: 13 IGFMGSGKSSLAQELGLALKLEVL 36
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 29.2 bits (65), Expect = 4.0
Identities = 11/26 (42%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTF 770
VLM G G+GK+ +A VA + F
Sbjct: 12 VLM-GVSGSGKSAVASEVAHQLHAAF 36
>2nw2_A ELS4 TCR alpha chain; T cell receptor, immune system; 1.40A {Homo
sapiens} PDB: 2nx5_D 4dzb_A
Length = 200
Score = 29.1 bits (65), Expect = 4.3
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 12/83 (14%)
Query: 549 WVTDPDVWPPANDTDPSLYQLHTPKPQQT-----KTFSKTRKSSIPNKSTPQSNNSTLKR 603
T V P + DP++YQL K F + QS +S +
Sbjct: 102 RGTSLIVHPYIQNPDPAVYQLRDSKSSDKSVCLFTDFD-------SQTNVSQSKDSDVYI 154
Query: 604 GNKTPANNKKEPNLGYKSVTYDK 626
+K + + +V +
Sbjct: 155 TDKCVLDMRSMDFKSNSAVAWSN 177
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 29.1 bits (66), Expect = 4.4
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFF 771
K ++ +G G+GK+ LA+A+A + F
Sbjct: 5 KNIVFIGFMGSGKSTLARALAKDLDLVFL 33
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 29.6 bits (65), Expect = 4.5
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 6/69 (8%)
Query: 709 DDIAELTDA--KRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766
+I TD + L + + + + K + P L+ G PG+GKT L A+ E
Sbjct: 2 ANIVNFTDKQFENRLNDNLEE---LIQGKKAVESP-TAFLLGGQPGSGKTSLRSAIFEET 57
Query: 767 GTTFFNVCS 775
+ +
Sbjct: 58 QGNVIVIDN 66
>1kgc_D T-cell receptor alpha chain; LC13 clone, immune system; 1.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1mi5_D 3kpr_D 3kps_D
3o6f_C 3t0e_C 3pqy_D 2esv_D 3dxa_D 3dx9_A
Length = 206
Score = 29.2 bits (65), Expect = 4.7
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 15/87 (17%)
Query: 551 TDPDVWPPANDTDPSLYQLHTPKPQQT-----KTFSKTRKSSIPNKSTPQSNNSTLKRGN 605
T V P + DP++YQL K F + QS +S + +
Sbjct: 106 TILTVHPNIQNPDPAVYQLRDSKSSDKSVCLFTDFD-------SQTNVSQSKDSDVYITD 158
Query: 606 KTPANNKKEPNLGYKSVTYDKVLKNSS 632
KT ++ +KS + S
Sbjct: 159 KT---VLDMRSMDFKSNSAVAWSNKSD 182
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
c.37.1.20 PDB: 1s9h_A
Length = 267
Score = 29.1 bits (65), Expect = 5.0
Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 14/90 (15%)
Query: 690 DLVEMLERDMVQKNPNIRW-------DDIAELTDAKRLLE----EAVVLPMWMPEFFKGI 738
++ + M + +DI+ ++LE + +
Sbjct: 42 AALDNAGKIMSLTKTAPDYLVGQQPVEDISS-NRIYKILELNGYDPQYAASVFLGWATK- 99
Query: 739 RRPWKGVL-MVGPPGTGKTMLAKAVATECG 767
+ + + + GP TGKT +A+A+A
Sbjct: 100 KFGKRNTIWLFGPATTGKTNIAEAIAHTVP 129
>4eba_G RNA15, KLLA0F09383P; HAT domain, heat repeat, monkeytail, CLP1,
PCF11, structural RNA binding protein complex; 3.30A
{Kluyveromyces lactis}
Length = 174
Score = 29.0 bits (64), Expect = 5.2
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 2/65 (3%)
Query: 239 EALLKINLKEVKVDPAVDLTHIASQLDGYSGADITNVCRDASMMSMRRKIIGLTPEQIRQ 298
E LL + VD L + Q + D + + R+++ L I
Sbjct: 93 ELLLSNGV--CSVDQLTQLAMASKQRPEEQTDNTVEDGLDEEKVDLLRQVLQLQDSDIAM 150
Query: 299 IPKEE 303
+P++E
Sbjct: 151 LPQDE 155
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 29.3 bits (66), Expect = 5.2
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 746 LMVGPPGTGKTMLAKAVA 763
L+ PG G L A++
Sbjct: 28 LIQALPGMGDDALIYALS 45
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 29.5 bits (66), Expect = 5.2
Identities = 12/91 (13%), Positives = 22/91 (24%), Gaps = 15/91 (16%)
Query: 535 DSIFSSDANNSLEPWVTDP-DVWPPANDTDPSLYQLHTPKPQQTKTFSKTRKSSIPNKST 593
S S + DP VW N+ + + + Q + S
Sbjct: 29 GSGAMEKEEKSNLIYDKDPGYVWDNKNECEGA-----AEETYQELNY---------EPSI 74
Query: 594 PQSNNSTLKRGNKTPANNKKEPNLGYKSVTY 624
+ N E + + + Y
Sbjct: 75 SADKLTWTPTRLAKTVFNTYEDDDDFNVLCY 105
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 28.9 bits (64), Expect = 5.3
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 743 KGVLMVGPPGTGKTMLA 759
GVL+ G GK+ L+
Sbjct: 17 MGVLITGEANIGKSELS 33
>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain,
human constant...; natural killer T cell receptor,
immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A
4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D
1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D*
3uts_D 1qrn_D 3hg1_D 3rdt_A ...
Length = 208
Score = 28.8 bits (64), Expect = 5.6
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 12/84 (14%)
Query: 551 TDPDVWPPANDTDPSLYQLHTPKPQQT-----KTFSKTRKSSIPNKSTPQSNNSTLKRGN 605
T V+P + DP++YQL K F + QS +S + +
Sbjct: 108 TRVSVFPYIQNPDPAVYQLRDSKSSDKSVCLFTDFD-------SQTNVSQSKDSDVYITD 160
Query: 606 KTPANNKKEPNLGYKSVTYDKVLK 629
K + + +V +
Sbjct: 161 KCVLDMRSMDFKSNSAVAWSNKSD 184
>4fca_A Conserved domain protein; structural genomics, the center for
structural genomics of I diseases, csgid, niaid; 2.06A
{Bacillus anthracis}
Length = 525
Score = 29.5 bits (65), Expect = 6.1
Identities = 20/135 (14%), Positives = 40/135 (29%), Gaps = 14/135 (10%)
Query: 556 WPPANDTDPSLYQLHTPKPQQ---------TKTFSKTRKSSIPNKSTPQSNNSTLKRGNK 606
+ T + +L+ PK ++ + P + G
Sbjct: 380 LSANDATREKIEKLNLPKLEKEIWLSTDSNPIREKQIELYEAPYGEPNNEKIQNMVIGTT 439
Query: 607 TPANNKKE--PNLGYKSVTYDKVLKNSSDNENVKNKTKSNNAQGNSNP---TNNSNNNNS 661
KE NLG T +++++ + K + + +GN N N +S
Sbjct: 440 YDEEKAKELVQNLGEGVKTTGVIMQDTPEVGEKTVKVEIVDGKGNKNFIPVVVNVGYGDS 499
Query: 662 NNNPGNSNSHDDKPV 676
G + + V
Sbjct: 500 LLVYGLNYTWGGLEV 514
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 29.3 bits (65), Expect = 6.1
Identities = 20/123 (16%), Positives = 47/123 (38%), Gaps = 5/123 (4%)
Query: 733 EFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV-CSSTLTSKYRGESEKLVR 791
E KG+R P L++G TGK+ + K E + + Y + L+
Sbjct: 23 EKLKGLRAPI--TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLE 80
Query: 792 LLFEMARFYAPSTIFIDEIDSLC--SRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKV 849
L E+ + + + ++ G+E + +R+ + ++ A + +
Sbjct: 81 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVI 140
Query: 850 VMV 852
+++
Sbjct: 141 IVL 143
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 29.1 bits (65), Expect = 6.2
Identities = 11/38 (28%), Positives = 16/38 (42%)
Query: 729 MWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766
M + FK + V + G G GKT ++ A A
Sbjct: 1 MAFKDLFKFNKGKTTFVFIGGKGGVGKTTISAATALWM 38
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 28.9 bits (65), Expect = 6.3
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 745 VLMVGPPGTGKTMLAKAVATE 765
+++ G PG GKT +A E
Sbjct: 45 MIISGMPGIGKTTSVHCLAHE 65
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 29.0 bits (65), Expect = 7.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 745 VLMVGPPGTGKTMLAKAVATE 765
+L GPPGTGKT A+ E
Sbjct: 61 MLFYGPPGTGKTSTILALTKE 81
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 29.2 bits (65), Expect = 7.3
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 733 EFFKGIRRPWKGVLMVGPPGTGKTMLAKAV 762
K I+ V + GP GTG T L K +
Sbjct: 36 IVMKAIKEKKHHVTINGPAGTGATTLTKFI 65
>3qav_A RHO-class glutathione S-transferase; cytosol; 2.10A {Laternula
elliptica} PDB: 3qaw_A*
Length = 243
Score = 28.8 bits (65), Expect = 7.4
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 44 AMVDGFVYIF--GNILTFLTSKYPSVFLLPK 72
DG V + I +L KYP V L P
Sbjct: 80 TFTDGDVVVNESTAICMYLEEKYPKVPLFPS 110
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 28.7 bits (63), Expect = 7.6
Identities = 4/21 (19%), Positives = 6/21 (28%)
Query: 745 VLMVGPPGTGKTMLAKAVATE 765
+ + K L V E
Sbjct: 48 FYITNADDSTKFQLVNDVMDE 68
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 28.7 bits (65), Expect = 7.8
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 699 MVQKNPNIRWDDIAELTDA-KRLLEEAV 725
+ KN N+ +DI + K L++ +
Sbjct: 171 IKDKNRNVSEEDIKYCSLRQKELIDIGI 198
>3pdi_A Nitrogenase MOFE cofactor biosynthesis protein NI; nitrogenase
cofactor maturation, NIFB, nifdk, NIFH; HET: CZL; 2.40A
{Azotobacter vinelandii}
Length = 483
Score = 29.0 bits (65), Expect = 7.9
Identities = 14/96 (14%), Positives = 32/96 (33%), Gaps = 16/96 (16%)
Query: 741 PWKGVLMV--GPPG-TGKTMLAKAVATECGTTFFNVCSSTLTSK---YRGESEKLVRLLF 794
P V + GP G + + + + ++ LT ++L +
Sbjct: 56 PVADVAHIVHGPIACAGSSWDNRGTRSSGPDLYRIGMTTDLTENDVIMGRAEKRLFHAIR 115
Query: 795 EMARFYAPSTIFI----------DEIDSLCSRRGSE 820
+ Y+P +F+ D++D++C
Sbjct: 116 QAVESYSPPAVFVYNTCVPALIGDDVDAVCKAAAER 151
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.8 bits (64), Expect = 8.3
Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 10/107 (9%)
Query: 734 FFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT---ECGTTFFNVCSSTLTSKYRGESEKLV 790
+ +G R ++ PG GK+ AK + G+ + E +++
Sbjct: 27 WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID-------PEREYKEMC 79
Query: 791 RLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQM 837
R L + I+ + E E A + L +Q
Sbjct: 80 RKLGGVWINCTGGEGKINPLQVRLRPVEEEDEENAVFQSPLALHIQT 126
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 28.8 bits (64), Expect = 8.4
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 745 VLMVGPPGTGKTMLAKAVATE--CGTTFFNVCSSTLTSKYRGESEKL 789
VL+ G PGTGKT +A +A T F + S + S ++E L
Sbjct: 73 VLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEAL 119
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 28.1 bits (62), Expect = 9.1
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 743 KGVLMVGPPGTGKTMLA 759
GVL+ G G GK+ A
Sbjct: 35 LGVLITGDSGVGKSETA 51
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 28.1 bits (62), Expect = 9.4
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 741 PWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773
K V++ G PG G T ++ N
Sbjct: 2 KNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets,
alpha helices, AMY amyloidosis, blood coagulation,
disease mutation, glycoprot phosphoprotein; HET: NAG NDG
BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A*
2a45_G*
Length = 562
Score = 28.7 bits (63), Expect = 9.9
Identities = 34/227 (14%), Positives = 76/227 (33%), Gaps = 26/227 (11%)
Query: 467 YQSVLQQI-NRIVVELRDNEKQKRHWDHINNQLTKEYNEVQRL------------QSMIR 513
Y V + + +RI V R ++ +H + + + +++RL S R
Sbjct: 108 YNRVSEDLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRGSCSR 167
Query: 514 NFGSHNVNDERMLGNSRPNQFDSIFSSDANNSLEPWVTDPDVWPPANDTDPSLYQLH-TP 572
+ V+ + + Q + + + D S + P D P ++
Sbjct: 168 AL-AREVDLKDYEDQQK--QLEQVIAKDLLPSRDRQHLPLIKMKPVPDLVPGNFKSQLQK 224
Query: 573 KPQQTKTFSKTRKSSI----PNKSTPQSNNSTLKRGNKTPANNKKEPNLGYKSVTYDKVL 628
P + K + + + P + ST + + + G S
Sbjct: 225 VPPEWKALTDMPQMRMELERPGGNEITRGGSTSYGTGSETESPRNPSSAG--SWNSGSSG 282
Query: 629 KNSSDNENVKNKTKSNNAQ---GNSNPTNNSNNNNSNNNPGNSNSHD 672
S+ N N + A G+S P + + N+ ++ G++ + +
Sbjct: 283 PGSTGNRNPGSSGTGGTATWKPGSSGPGSTGSWNSGSSGTGSTGNQN 329
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.131 0.375
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 12,708,753
Number of extensions: 769546
Number of successful extensions: 2402
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2295
Number of HSP's successfully gapped: 208
Length of query: 863
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 761
Effective length of database: 3,853,851
Effective search space: 2932780611
Effective search space used: 2932780611
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.5 bits)