RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11009
(863 letters)
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 187 bits (476), Expect = 2e-54
Identities = 61/166 (36%), Positives = 90/166 (54%), Gaps = 8/166 (4%)
Query: 699 MVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGI-RRPWKGVLMVGPPGTGKTM 757
+ + + D+A +AK + E V + P F+ + + KGVLMVGPPGTGKT+
Sbjct: 2 LTEDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTL 60
Query: 758 LAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRR 817
LAKA+A E FF + S + G VR +FE A+ AP IFIDEID++ +R
Sbjct: 61 LAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQR 120
Query: 818 GSE--SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
G+ H+ + +++LV+MDG E ++V+AATN P
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGFEGNEG----IIVIAATNRPDV 162
Score = 97.2 bits (242), Expect = 4e-23
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 19/109 (17%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D AL R R ++++ + LP GRE +LK++++ V + P +D IA G+SGA
Sbjct: 160 PDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGA 219
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALAR 319
D+ N+ +A++ + R VS +FE+A +
Sbjct: 220 DLANLVNEAALFAARGNKR-----------------VVSMVEFEKAKDK 251
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 186 bits (473), Expect = 3e-54
Identities = 61/161 (37%), Positives = 86/161 (53%), Gaps = 8/161 (4%)
Query: 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGI-RRPWKGVLMVGPPGTGKTMLAKAV 762
P + + D+A +AK L+E V + P F + R KGVL+VGPPG GKT LA+AV
Sbjct: 4 PKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAV 62
Query: 763 ATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGS--E 820
A E F S + G VR LFE A+ +AP +FIDEID++ +RGS
Sbjct: 63 AGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVG 122
Query: 821 SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
++ + ++LLV+MDG ++V+AATN P
Sbjct: 123 GGNDEREQTLNQLLVEMDGFEKDTA----IVVMAATNRPDI 159
Score = 99 bits (249), Expect = 4e-24
Identities = 29/108 (26%), Positives = 52/108 (48%), Gaps = 19/108 (17%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P +D AL R R +++I I P GRE +L+I+ + + VDL +A + G+ GA
Sbjct: 157 PDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGA 216
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALA 318
D+ N+ +A++++ R ++ +D EEA +
Sbjct: 217 DLENLLNEAALLAAREGRR-----------------KITMKDLEEAAS 247
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 159 bits (402), Expect = 2e-44
Identities = 66/160 (41%), Positives = 93/160 (58%), Gaps = 7/160 (4%)
Query: 704 PNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGI-RRPWKGVLMVGPPGTGKTMLAKAV 762
P + W+DI L D KR L+E V P+ P+ F P KGVL GPPG GKT+LAKA+
Sbjct: 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 61
Query: 763 ATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRG--SE 820
A EC F ++ L + + GESE VR +F+ AR AP +F DE+DS+ RG
Sbjct: 62 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 121
Query: 821 SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860
A+ RV +++L +MDG+S+ ++ V ++ ATN P
Sbjct: 122 DGGGAADRVINQILTEMDGMSTKKN----VFIIGATNRPD 157
Score = 73.7 bits (180), Expect = 6e-15
Identities = 40/110 (36%), Positives = 62/110 (56%), Gaps = 5/110 (4%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID A+ R RL++ IYIPLP + R A+LK NL++ V VDL +A +G+SGA
Sbjct: 156 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGA 215
Query: 271 DITNVCRDASMMSMRRKII-GLTPEQIRQIPKEELDLPVSQRDFEEALAR 319
D+T +C+ A +++R I + E+ RQ ++ V + D + R
Sbjct: 216 DLTEICQRACKLAIRESIESEIRRERERQTNPSAME--VEEDDPVPEIRR 263
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 131 bits (330), Expect = 4e-34
Identities = 32/181 (17%), Positives = 61/181 (33%), Gaps = 15/181 (8%)
Query: 689 NDLVEMLERDMVQKNPNIRWDD--IAELTDAKRLLEEAVV--LPMWMPEFF-KGIRRPWK 743
+V E+ + ++ ++ + R + L P G R
Sbjct: 64 QRIVAYKEKSVKAEDGSVSVVQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYAS 123
Query: 744 GVLMV-GPPGTGKTMLAKAVATECG--TTFFNVCSSTLTSKYRGESEKLVRLLFEMARFY 800
G+++V G +GKT L A+ G + V S Y + V +
Sbjct: 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML-- 181
Query: 801 APSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860
I ID + ++ G + R +LL + + +S+ +V+A+ N P
Sbjct: 182 QHRVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAM----AASRGCVVIASLN-PT 236
Query: 861 E 861
Sbjct: 237 S 237
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 127 bits (319), Expect = 2e-33
Identities = 65/156 (41%), Positives = 92/156 (58%), Gaps = 6/156 (3%)
Query: 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGI-RRPWKGVLMVGPPGTGKTMLAKAVAT 764
+ +DD+ ++E V LP+ P FK I +P +G+L+ GPPGTGKT++A+AVA
Sbjct: 1 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 60
Query: 765 ECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHE 824
E G FF + + SK GESE +R FE A AP+ IFIDE+D++ +R ++ E
Sbjct: 61 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKRE-KTHGE 119
Query: 825 ASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860
RR+ S+LL MDGL V+V+AATN P
Sbjct: 120 VERRIVSQLLTLMDGLKQRAH----VIVMAATNRPN 151
Score = 73.1 bits (178), Expect = 8e-15
Identities = 35/109 (32%), Positives = 62/109 (56%), Gaps = 2/109 (1%)
Query: 213 PWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYSGA 270
P ID ALRR R ++ + I +P GR +L+I+ K +K+ VDL +A++ G+ GA
Sbjct: 150 PNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGA 209
Query: 271 DITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALAR 319
D+ +C +A++ ++R+K+ + E + L V+ DF AL++
Sbjct: 210 DLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ 258
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 79.5 bits (195), Expect = 1e-16
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 716 DAKRLLEEAVVLPMWMPEFFKGIR--RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773
DAKR + A+ + + +R K +LM+GP G GKT +A+ +A F V
Sbjct: 21 DAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKV 80
Query: 774 CSSTL--TSKYRGESEKLVRLLFEMA-----RFYAPSTIFIDEIDSLCSRRGSESEHEAS 826
++ E + ++R L + A +FIDEID +C + +
Sbjct: 81 EATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSR 140
Query: 827 RRVKSELLVQMDG 839
V+ +LL ++G
Sbjct: 141 EGVQRDLLPLVEG 153
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 78.5 bits (192), Expect = 2e-16
Identities = 23/165 (13%), Positives = 40/165 (24%), Gaps = 17/165 (10%)
Query: 706 IRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATE 765
+ + D LEE + + K + P L+ G PG+GKT L A+ E
Sbjct: 4 VNFTDKQFENRLNDNLEELI-------QGKKAVESP-TAFLLGGQPGSGKTSLRSAIFEE 55
Query: 766 CGTTFFNVCSSTLT---SKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESE 822
+ + T + + + + + Y+ E
Sbjct: 56 TQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIE 115
Query: 823 HEASRRVKSELLVQMDGLSSAE------DSSKVVMVLAATNFPWE 861
M E K+ L
Sbjct: 116 GTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYET 160
Score = 50.7 bits (120), Expect = 2e-07
Identities = 13/155 (8%), Positives = 39/155 (25%), Gaps = 23/155 (14%)
Query: 211 GIPWDIDEALRR--RLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLT------HIAS 262
+ + + + + L + + +T
Sbjct: 119 RTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHD 178
Query: 263 QLDGYSGADITNVCRDASMMSMRRKIIGLTP---------EQIRQIPKEELDLPVSQRDF 313
+ ++ + + +R ++ ++EL+ VS ++
Sbjct: 179 IVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRKVSGKEI 238
Query: 314 EEALARCNKSVAREDLENITVERIAPHMSTIGKKL 348
+ L R + + + P I +KL
Sbjct: 239 QPTLERIEQKMVLNKHQET------PEFKAIQQKL 267
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 77.7 bits (190), Expect = 2e-16
Identities = 36/160 (22%), Positives = 66/160 (41%), Gaps = 14/160 (8%)
Query: 702 KNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKA 761
N I+W D R+L++ +L + + R P VL+ GPP +GKT LA
Sbjct: 8 MNGIIKWGD-----PVTRVLDDGELL---VQQTKNSDRTPLVSVLLEGPPHSGKTALAAK 59
Query: 762 VATECGTTFFNVCSSTLTSKYRGESE-KLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSE 820
+A E F +CS + ++ + ++ +F+ A S + +D+I+ L
Sbjct: 60 IAEESNFPFIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIG 119
Query: 821 SEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860
S V LLV + + ++++ T+
Sbjct: 120 PRF--SNLVLQALLVLLKKAPP---QGRKLLIIGTTSRKD 154
Score = 47.2 bits (111), Expect = 3e-06
Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 213 PWDIDEA-LRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVDLTHIASQLDGYS--- 268
+ E + I++P + E LL+ L+ + + T IA Q+ G
Sbjct: 153 KDVLQEMEMLNAFSTTIHVPNIA--TGEQLLEA-LELLGNFKDKERTTIAQQVKGKKVWI 209
Query: 269 GADITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELD 305
G + + S+ + +R+ LD
Sbjct: 210 GIKKLLMLIEMSLQMDPEYRVRKFLALLREEGASPLD 246
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 76.3 bits (187), Expect = 2e-15
Identities = 25/120 (20%), Positives = 40/120 (33%), Gaps = 10/120 (8%)
Query: 734 FFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKY-RGESEKLVRL 792
I + + L GP +GKT LA A+ CG NV + G + +
Sbjct: 147 MVYNIPKK-RYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLV 205
Query: 793 LFE------MARFYAPSTIFIDEIDSLCSRR--GSESEHEASRRVKSELLVQMDGLSSAE 844
+FE PS I+ +D+L + E K + ++ E
Sbjct: 206 VFEDVKGTGGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNE 265
Score = 41.2 bits (96), Expect = 4e-04
Identities = 9/108 (8%), Positives = 24/108 (22%), Gaps = 22/108 (20%)
Query: 215 DIDEALRR--RLEKRIYIPLPSKAGREAL-LKINLKEVKVDPAVDLTHIASQLDGYSGAD 271
+ R K+I + L++ + + + + A+
Sbjct: 265 EYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQ--SGIALLLMLIWYRPVAE 322
Query: 272 ITNVCRDASMMSMRRKIIGLTPEQIRQIPKEELDLPVSQRDFEEALAR 319
+ + R LD S +++
Sbjct: 323 FAQSIQSRIVEWKER-----------------LDKEFSLSVYQKMKFN 353
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 58.4 bits (140), Expect = 5e-10
Identities = 32/155 (20%), Positives = 52/155 (33%), Gaps = 14/155 (9%)
Query: 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766
D+ K+ L + E K + P + +L+ GPPG GKT LA +A E
Sbjct: 7 TLDEYIGQERLKQKLRVYL-------EAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL 59
Query: 767 GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEAS 826
G +S + G+ ++ +FIDEI L +
Sbjct: 60 GVNLR--VTSGPAIEKPGDLAAILA-----NSLEEGDILFIDEIHRLSRQAEEHLYPAME 112
Query: 827 RRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWE 861
V ++ Q + ++ AT P
Sbjct: 113 DFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGL 147
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 51.5 bits (123), Expect = 2e-07
Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVA------------TECGTTFFNVCSSTLTSKYRGES 786
RR L+VG G GKT +A+ +A +C ++ S +KYRG+
Sbjct: 36 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDF 95
Query: 787 EKLVRLLFEMARFYAPSTIFIDEIDSLCSR-RGSESEHEASRRVKSEL 833
EK + L + S +FIDEI ++ S + +A+ +K L
Sbjct: 96 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL 143
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 47.3 bits (111), Expect = 3e-06
Identities = 36/156 (23%), Positives = 57/156 (36%), Gaps = 18/156 (11%)
Query: 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766
D+ + K+ L A+ E K VL+ GPPG GKT LA +A+E
Sbjct: 7 SLDEFIGQENVKKKLSLAL-------EAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 59
Query: 767 GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEAS 826
T L + + +L + R +FIDEI L ++ E + A
Sbjct: 60 QTNIHVTSGPVLVKQ-----GDMAAILTSLERG---DVLFIDEIHRL-NKAVEELLYSAI 110
Query: 827 RRVKSELLVQMDGL--SSAEDSSKVVMVLAATNFPW 860
+ ++++ S D +V A T
Sbjct: 111 EDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGL 146
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 47.6 bits (112), Expect = 4e-06
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 12/49 (24%)
Query: 716 DAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVAT 764
D K L V P GI GVL+ G GTGK+ +A+A
Sbjct: 14 DMKLALLLTAVDP--------GIG----GVLVFGDRGTGKSTAVRALAA 50
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 47.1 bits (110), Expect = 4e-06
Identities = 13/91 (14%), Positives = 25/91 (27%), Gaps = 4/91 (4%)
Query: 733 EFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC----GTTFFNVCSSTLTSKYRGESEK 788
+ + + ++G PGTGKT+ + + F + + E
Sbjct: 34 NWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEI 93
Query: 789 LVRLLFEMARFYAPSTIFIDEIDSLCSRRGS 819
L R F+ + R
Sbjct: 94 ARSLNIPFPRRGLSRDEFLALLVEHLRERDL 124
Score = 31.7 bits (70), Expect = 0.34
Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 11/94 (11%)
Query: 220 LRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVD---LTHIASQLDGYSGADIT--- 273
+ I +K +L K + + L IA + D
Sbjct: 179 RGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD 238
Query: 274 -----NVCRDASMMSMRRKIIGLTPEQIRQIPKE 302
++ ++ + + + PE +R+ KE
Sbjct: 239 ARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 272
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 47.1 bits (111), Expect = 6e-06
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 742 WKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLT 779
K +LM+GP G GKT +A+ +A F V ++ T
Sbjct: 49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFT 86
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 43.6 bits (101), Expect = 5e-05
Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 5/73 (6%)
Query: 707 RWDDIAELTDAKRLLEEAV-----VLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKA 761
+ + L+ + K ++ ++ GPPG GKT A
Sbjct: 12 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHL 71
Query: 762 VATECGTTFFNVC 774
VA E G
Sbjct: 72 VAQELGYDILEQN 84
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 41.0 bits (95), Expect = 5e-04
Identities = 28/115 (24%), Positives = 43/115 (37%), Gaps = 10/115 (8%)
Query: 738 IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV---CSSTLTSKYRGESEKLVRLLF 794
+ +L++GP G+GKT++A+ +A + L RLL
Sbjct: 64 VELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQ 123
Query: 795 E---MARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDS 846
+ +FIDEID + SE+ + R S VQ L E S
Sbjct: 124 ASDWNVQKAQKGIVFIDEID----KISRLSENRSITRDVSGEGVQQALLKIVEGS 174
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 39.5 bits (91), Expect = 6e-04
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARF 799
+L+ G PG+GK+ +A+A+A G + S L +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNR 61
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 39.7 bits (91), Expect = 6e-04
Identities = 13/63 (20%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 740 RPW--KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMA 797
RP+ K V ++G +GK++L +A TT + G E+ ++
Sbjct: 3 RPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQ 62
Query: 798 RFY 800
Sbjct: 63 MAL 65
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 39.7 bits (92), Expect = 0.001
Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 13/108 (12%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVA------------TECGTTFFNVCSSTLTSKYRGES 786
RR +++G PG GKT + + +A + S +KYRGE
Sbjct: 40 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEF 99
Query: 787 EKLVRLLFEMARFYAPSTI-FIDEIDSLCSRRGSESEHEASRRVKSEL 833
E+ ++ + + I FIDE+ ++ +E +A +K L
Sbjct: 100 EERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPAL 147
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 38.7 bits (90), Expect = 0.001
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 18/84 (21%)
Query: 745 VLMVGPPGTGKTMLAKA------------VATECGTTFFNVCSSTLTSKYRGESEKLVRL 792
VL+ G G GK ++A+ VA + ++ + L +G V
Sbjct: 26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85
Query: 793 ---LFEMARFYAPSTIFIDEIDSL 813
FE+A T+F+DEI L
Sbjct: 86 KEGFFELAD---GGTLFLDEIGEL 106
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 38.1 bits (87), Expect = 0.002
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 743 KGVLMVGPPGTGKTMLAKAVA 763
+ V + GPPG GKT L +
Sbjct: 2 RHVFLTGPPGVGKTTLIHKAS 22
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 37.7 bits (86), Expect = 0.003
Identities = 4/42 (9%), Positives = 15/42 (35%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRG 784
+ +++ G GK+ + + + + + +L
Sbjct: 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL 45
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 37.8 bits (86), Expect = 0.004
Identities = 16/106 (15%), Positives = 36/106 (33%), Gaps = 3/106 (2%)
Query: 733 EFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRL 792
E KG+R P L++G TGK+ + K E + + + + +
Sbjct: 22 EKLKGLRAPI--TLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLE 79
Query: 793 LFE-MARFYAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQM 837
L + + + + + ++ +E + + K L
Sbjct: 80 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFAN 125
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 36.8 bits (84), Expect = 0.005
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFN 772
V+ VG PG GK+ + G N
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHVN 44
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 35.8 bits (81), Expect = 0.009
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVC 774
+++G G+GK+ +A VA + F +
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGD 38
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 36.3 bits (82), Expect = 0.012
Identities = 22/152 (14%), Positives = 40/152 (26%), Gaps = 31/152 (20%)
Query: 736 KGIRRPWKGVLMVGPPGTGKTMLAKAVATECG---------TTFFNVCSSTLTSKYRGES 786
G+ +G G GKT LAK V + + Y S
Sbjct: 40 AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILS 99
Query: 787 EKLV------------------RLLFEMARFYAPSTIFIDEIDSLCSRRGSESEHEASRR 828
+ L+ + + +DE S+ S +E +
Sbjct: 100 LIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLL 159
Query: 829 VKSELLVQMDGLSSAEDSSKVVMVLAATNFPW 860
E + DG++ ++V +
Sbjct: 160 RVHEEIPSRDGVNRIG----FLLVASDVRALS 187
Score = 29.3 bits (64), Expect = 1.8
Identities = 11/97 (11%), Positives = 30/97 (30%), Gaps = 8/97 (8%)
Query: 214 WDIDEALRRRLEKRIYIPLPSKAGREALLKINLKEVKVDPAVD---LTHIASQLDGYSGA 270
+ + ++ ++++P +L+ + D + L I+ G
Sbjct: 190 REKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGG 249
Query: 271 -----DITNVCRDASMMSMRRKIIGLTPEQIRQIPKE 302
+ A M+ L+ + +R+ E
Sbjct: 250 DGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 286
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 35.1 bits (79), Expect = 0.016
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774
+ + +VGP G GK+ + + +A + F++
Sbjct: 3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 34
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 36.0 bits (82), Expect = 0.017
Identities = 24/113 (21%), Positives = 37/113 (32%), Gaps = 19/113 (16%)
Query: 716 DAKRLLEEAVVLPMWMPEFFKGIRRPWKGV---LMVGPPGTGKTMLAKAVATECGTTFFN 772
A L EA+ + G+ K V L GP G GKT + ++ G
Sbjct: 29 KAIEALTEAIKM------ARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR 82
Query: 773 VCSSTLT-----SKYRGESEKLV-----RLLFEMARFYAPSTIFIDEIDSLCS 815
S S+ G V LL + + + + +DEI+
Sbjct: 83 FDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHP 135
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.8 bits (76), Expect = 0.038
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVC 774
+L+ G PG GKT L K +A++ G + NV
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVG 36
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 33.1 bits (74), Expect = 0.075
Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 1/56 (1%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFY 800
++ GP G GK+ K +A + + + + + G +A +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAY-IEGDIINHMVVGGYRPPWESDELLALTW 59
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 33.0 bits (74), Expect = 0.076
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGE 785
RP +++ GP GTGK+ L K + E +F SST + GE
Sbjct: 2 RP---IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 33.4 bits (75), Expect = 0.079
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 745 VLMVGPPGTGKTMLAKAVA 763
++MVG P GKT ++K +
Sbjct: 5 IVMVGLPARGKTYISKKLT 23
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 33.0 bits (74), Expect = 0.081
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFF 771
+ + MVG G G T + + +A G F
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFV 31
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 32.6 bits (73), Expect = 0.088
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFF 771
K ++ +G G+GK+ LA+A+A + F
Sbjct: 1 KNIVFIGFMGSGKSTLARALAKDLDLVFL 29
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 33.0 bits (74), Expect = 0.091
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKL 789
K V++ G PG G T ++ N + S +++
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEE 48
>d1t3ta2 c.23.16.1 (A:1034-1295) FGAM synthase PurL,
amidotransferase domain {Salmonella typhimurium [TaxId:
90371]}
Length = 262
Score = 33.2 bits (75), Expect = 0.11
Identities = 22/172 (12%), Positives = 47/172 (27%), Gaps = 8/172 (4%)
Query: 2 CIATGASMVGILGKSYNAAKRPQQSTEHSLAENEEIELSIFSAMVDGFVYIFGNILTFLT 61
+ G A + +S E F N ++
Sbjct: 54 ALVACGGFSY--GDVLGAGEGWAKS--ILFNHRVRDEFETFFHRPQTLALGVCNGCQMMS 109
Query: 62 SKYPSVFLLPKAIRIGNLTFIFGSEFQSEPVVGSGTYLKHKSPIKMNFLSLVLPLLAEEH 121
+ L+P + F++ + T M + + + +
Sbjct: 110 N---LRELIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAV-SHGE 165
Query: 122 GKLKFKEAITLALTVGSSLNLYRSITNRGFYIEDYEVSPPGPTLAVAKMFSS 173
G+++ ++ LA L R + N G E Y +P G + + +
Sbjct: 166 GRVEVRDDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTE 217
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 32.0 bits (71), Expect = 0.15
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 745 VLMVGPPGTGKTMLAKAVATE 765
+L +G PG+GK+ A+ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAK 25
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 32.0 bits (71), Expect = 0.18
Identities = 10/54 (18%), Positives = 17/54 (31%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMAR 798
+ + G +GK +A+A+ S L R E + E
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRH 62
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 31.9 bits (71), Expect = 0.18
Identities = 14/97 (14%), Positives = 25/97 (25%), Gaps = 4/97 (4%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAP 802
K ++ G PG GK+ + V N + KL
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRD----EM 57
Query: 803 STIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDG 839
+ +++ L EA + L +
Sbjct: 58 RKLSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHA 94
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 31.9 bits (71), Expect = 0.18
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNV 773
++VG PG+GK+ + + +A G +
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGVGLLDT 32
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 32.2 bits (72), Expect = 0.21
Identities = 9/70 (12%), Positives = 14/70 (20%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
+L G GTGKT+L + +
Sbjct: 29 ILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNL 88
Query: 805 IFIDEIDSLC 814
+ I
Sbjct: 89 LKIVCAYPES 98
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 32.0 bits (71), Expect = 0.21
Identities = 7/28 (25%), Positives = 11/28 (39%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFN 772
V + G G GKT ++ A+
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGIP 49
>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1
protein) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 29.8 bits (67), Expect = 0.22
Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 451 ARESSLTGNYDSACLYYQSVLQQINRIVVELRDNEKQKRHWDHINNQLTKEYNE-VQRLQ 509
A + GNY+ A YQ +Q +V +K K+ EY + ++L+
Sbjct: 18 AAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSI----RAKCTEYLDRAEKLK 73
Query: 510 SMIR 513
++
Sbjct: 74 EYLK 77
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 31.5 bits (70), Expect = 0.23
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 745 VLMVGPPGTGKTMLAKAVA 763
+++ G PG GKT L K +
Sbjct: 3 IIITGEPGVGKTTLVKKIV 21
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 31.5 bits (70), Expect = 0.26
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFF 771
+L+ G PGTGKT +A+ +A E
Sbjct: 8 ILITGTPGTGKTSMAEMIAAELDGFQH 34
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 31.5 bits (70), Expect = 0.27
Identities = 7/30 (23%), Positives = 9/30 (30%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVC 774
+ GTGKT L K +
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPG 34
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 31.6 bits (70), Expect = 0.28
Identities = 8/51 (15%), Positives = 17/51 (33%), Gaps = 6/51 (11%)
Query: 730 WMPEFFKGIRRPWK------GVLMVGPPGTGKTMLAKAVATECGTTFFNVC 774
W+ F+ + ++ +L+ PG G L A++
Sbjct: 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGH 56
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 31.5 bits (70), Expect = 0.32
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
Query: 736 KGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773
KG+R +++GPPG GK A +A
Sbjct: 2 KGVR-----AVLLGPPGAGKGTQAPKLAKNFCVCHLAT 34
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 31.3 bits (69), Expect = 0.38
Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 11/111 (9%)
Query: 707 RWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATEC 766
+ ++ + L+ P +P +L+ GP GTGK A+
Sbjct: 9 SLNALSHNEELTNFLKSLSDQPRDLP-----------HLLLYGPNGTGKKTRCMALLESI 57
Query: 767 GTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSRR 817
+ + KL + + + D + +
Sbjct: 58 FGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQE 108
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 31.1 bits (69), Expect = 0.44
Identities = 12/67 (17%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
L+ G GTGKT+ + F + E ++ F
Sbjct: 29 TLVSGTSGTGKTLFSIQFLYNGIIEFDEPG------VFVTFEETPQDIIKNARSFGWDLA 82
Query: 805 IFIDEID 811
+DE
Sbjct: 83 KLVDEGK 89
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 30.7 bits (68), Expect = 0.52
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 740 RPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYR 783
RP V++ GP G GK+ L K + E + F S T T R
Sbjct: 1 RP---VVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHT-TRNPR 40
>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain
{Mycoplasma pneumoniae [TaxId: 2104]}
Length = 177
Score = 30.3 bits (68), Expect = 0.56
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 743 KGVLMVGPPGTGKTMLAKA 761
GVL+ G G GK+ A
Sbjct: 16 VGVLLTGRSGIGKSECALD 34
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 30.8 bits (68), Expect = 0.58
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 749 GPPGTGKTMLAKAVATECGTTFFN 772
GP G GK L KA+A +
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLD 33
>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain
{Lactobacillus casei [TaxId: 1582]}
Length = 176
Score = 30.3 bits (68), Expect = 0.63
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 743 KGVLMVGPPGTGKTMLA 759
GVL+ G G GK+ A
Sbjct: 15 LGVLITGDSGVGKSETA 31
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 30.7 bits (68), Expect = 0.65
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 749 GPPGTGKTMLAKAVATECGTTFFN 772
GP +GK+ +AK +A + G T+ +
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLD 33
>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain
{Staphylococcus xylosus [TaxId: 1288]}
Length = 169
Score = 29.9 bits (67), Expect = 0.68
Identities = 8/17 (47%), Positives = 10/17 (58%)
Query: 743 KGVLMVGPPGTGKTMLA 759
GVL+ G G GK+ A
Sbjct: 16 VGVLITGDSGIGKSETA 32
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
562]}
Length = 195
Score = 30.3 bits (68), Expect = 0.72
Identities = 22/104 (21%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 743 KGVLMVGPPGTGKT-----MLAKAVATECGTTFFN--VCSSTLTS-----KYRGESEKLV 790
+++G PG GKT + + + E V + + + KYRGE E+ +
Sbjct: 44 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERL 103
Query: 791 RLLFEMARFYAPSTI-FIDEIDSLCSRRGSESEHEASRRVKSEL 833
+ + + I FIDE+ ++ ++ +A +K L
Sbjct: 104 KGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL 147
>d1dpea_ c.94.1.1 (A:) Dipeptide-binding protein {Escherichia coli
[TaxId: 562]}
Length = 507
Score = 30.9 bits (68), Expect = 0.73
Identities = 9/59 (15%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 687 CDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGV 745
C ++++ + N R + + + ++A L + F+ +R+ KG
Sbjct: 435 CYKPFEDLIQPARATDDHNKRVELYKQA--QVVMHDQAPALIIAHSTVFEPVRKEVKGY 491
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 30.1 bits (66), Expect = 0.76
Identities = 10/58 (17%), Positives = 19/58 (32%)
Query: 749 GPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPSTIF 806
G +GKT LA ++ +VC + +++ E +Y
Sbjct: 29 GLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDV 86
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 29.9 bits (66), Expect = 0.86
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNV 773
++++GPPG GK A +
Sbjct: 5 MVLIGPPGAGKGTQAPNLQERFHAAHLAT 33
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 30.4 bits (67), Expect = 0.89
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 745 VLMVGPPGTGKTMLAKAVA 763
+V P G GK+MLA +A
Sbjct: 32 GALVSPGGAGKSMLALQLA 50
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 29.8 bits (66), Expect = 1.1
Identities = 5/29 (17%), Positives = 12/29 (41%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNV 773
++G PG+GK ++ + +
Sbjct: 9 AAIMGAPGSGKGTVSSRITKHFELKHLSS 37
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 29.8 bits (65), Expect = 1.1
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 745 VLMVGPPGTGKTMLAKAVATEC 766
M G TGKT + +A C
Sbjct: 26 TEMFGEFRTGKTQICHTLAVTC 47
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 29.4 bits (65), Expect = 1.1
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 739 RRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGE 785
R+ ++++G G G+ + + T+ F T + E
Sbjct: 3 RKT---LVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDE 46
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 251
Score = 29.7 bits (65), Expect = 1.2
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 745 VLMVGPPGTGKTMLAKAVATEC 766
+ G TGK+ L +A C
Sbjct: 37 TELFGEFRTGKSQLCHTLAVTC 58
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 29.6 bits (65), Expect = 1.2
Identities = 7/29 (24%), Positives = 13/29 (44%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNV 773
V ++G PG+GK + + G +
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSA 37
>g1qhh.1 c.37.1.19 (A:,B:,C:,D:) DEXX box DNA helicase {Bacillus
stearothermophilus, PcrA [TaxId: 1422]}
Length = 623
Score = 29.9 bits (66), Expect = 1.3
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 10/77 (12%)
Query: 745 VLMVGPPGTGKT-MLAKAVA---TECGTTFFNVCSSTLTSKYRGE-SEKLVRLLFEMARF 799
+L++ G+GKT +L +A E +N+ + T T+K E E++ LL A
Sbjct: 27 LLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAE- 85
Query: 800 YAPSTIFIDEIDSLCSR 816
++I S+C R
Sbjct: 86 ----DVWISTFHSMCVR 98
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 29.6 bits (65), Expect = 1.4
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVC 774
+ ++G PG GK + + + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 40
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 29.1 bits (64), Expect = 1.4
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNV 773
VL++GPPG GK A +A + G +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQIST 31
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 29.3 bits (64), Expect = 1.5
Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 16/85 (18%)
Query: 746 LMVGPPGTGKTMLAKAVATEC------GTTFFNVCSSTLTSK----------YRGESEKL 789
L GPPGTGKT A+ E + + +S R K
Sbjct: 37 LFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKP 96
Query: 790 VRLLFEMARFYAPSTIFIDEIDSLC 814
+ E I +DE DS+
Sbjct: 97 SKHDLENYPCPPYKIIILDEADSMT 121
>d1jeta_ c.94.1.1 (A:) Oligo-peptide binding protein (OPPA)
{Salmonella typhimurium [TaxId: 90371]}
Length = 517
Score = 30.0 bits (66), Expect = 1.6
Identities = 6/66 (9%), Positives = 25/66 (37%), Gaps = 2/66 (3%)
Query: 687 CDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGVL 746
+++ + + R + A+ ++L +++ ++P++ + ++ G
Sbjct: 442 KSPAFDKLIADTLKVADDTQRSELYAKA--EQQLDKDSAIVPVYYYVNARLVKPWVGGYT 499
Query: 747 MVGPPG 752
P
Sbjct: 500 GKDPLD 505
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 29.1 bits (64), Expect = 1.8
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVC 774
++++G P GK A+ + + G +
Sbjct: 3 IILLGAPVAGKGTQAQFIMEKYGIPQISTG 32
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 29.1 bits (64), Expect = 1.8
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 738 IRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNV 773
+++ K + +VG PG+GK + + + G T +
Sbjct: 5 LKKS-KIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 39
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 29.0 bits (64), Expect = 1.8
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYR 783
++ P G GK+ L +A+ V S T + R
Sbjct: 5 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPR 43
>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15
homolog {Human (Homo sapiens) [TaxId: 9606]}
Length = 258
Score = 29.3 bits (64), Expect = 1.8
Identities = 12/118 (10%), Positives = 28/118 (23%), Gaps = 4/118 (3%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
G TGKT L+ + E+ L ++A +
Sbjct: 40 TEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDH 99
Query: 805 IFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDSSKVVMVLAATNFPWEG 862
+ + E + + + + + ++A + G
Sbjct: 100 DAVLD----NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSG 153
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 29.3 bits (65), Expect = 1.9
Identities = 29/111 (26%), Positives = 38/111 (34%), Gaps = 20/111 (18%)
Query: 716 DAKRLLEEAVVLPMWMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATE---CGTTFFN 772
+A R + +A+ K RP L +GP G GKT LAK +A
Sbjct: 30 EAIRAVADAIRRAR---AGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIR 86
Query: 773 VCSSTLTSK------------YRGESEKLVRLLFEMARFYAPSTIFIDEID 811
+ + K Y G E L E R S I DEI+
Sbjct: 87 IDMTEYMEKHAVSRLIGAPPGYVGYEEG--GQLTEAVRRRPYSVILFDEIE 135
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 29.1 bits (64), Expect = 1.9
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNV 773
V++ G P +GK + + T+ +
Sbjct: 6 VMISGAPASGKGTQCELIKTKYQLAHISA 34
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 28.8 bits (63), Expect = 2.0
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSST 777
V++ GP GK+ + + + F+V ++T
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATT 37
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 28.7 bits (63), Expect = 2.2
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVC 774
++++G PG GK A+ + G +
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTG 32
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 28.9 bits (63), Expect = 2.3
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 745 VLMVGPPGTGKTMLAKAVATEC 766
G G+GKT +
Sbjct: 37 TEFAGVFGSGKTQIMHQSCVNL 58
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 27.9 bits (61), Expect = 2.7
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 745 VLMVGPPGTGKT-MLAKAVATECGTTFFNVCSSTLT 779
+ P G+GK+ + A A + S T
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAAT 46
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 28.4 bits (62), Expect = 2.8
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 745 VLMVGPPGTGKTMLAKAVATECG 767
V ++G PG GK + + G
Sbjct: 4 VFVLGGPGAGKGTQCARIVEKYG 26
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 28.2 bits (63), Expect = 3.0
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 730 WMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTL 778
+ F KG + ++ GP TGK+ + + +ST
Sbjct: 42 ALKSFLKGTPKK-NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS 89
>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic
domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 254
Score = 28.5 bits (62), Expect = 3.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 745 VLMVGPPGTGKTMLAKAVATEC 766
+ G G+GKT LA +A
Sbjct: 39 TEVFGEFGSGKTQLAHTLAVMV 60
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 28.1 bits (62), Expect = 3.2
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 745 VLMVGPPGTGKT 756
+VG G+GKT
Sbjct: 13 WFLVGLQGSGKT 24
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.2 bits (62), Expect = 3.3
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 745 VLMVGPPGTGKT 756
+++VG GTGK
Sbjct: 15 IMLVGVQGTGKA 26
>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA
{Escherichia coli [TaxId: 562]}
Length = 499
Score = 28.6 bits (62), Expect = 3.3
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 2/62 (3%)
Query: 684 SYGCDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWK 743
+ + + + + R ++ RL +EAV LP+ +
Sbjct: 422 GLADKPLIDKEIGEVLATHDETQRQALYRDI--LTRLHDEAVYLPISYISMMVVSKPELG 479
Query: 744 GV 745
+
Sbjct: 480 NI 481
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 28.1 bits (62), Expect = 3.5
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 745 VLMVGPPGTGK-TMLAK 760
+LMVG G GK T + K
Sbjct: 12 ILMVGVNGVGKTTTIGK 28
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 28.2 bits (62), Expect = 3.6
Identities = 8/17 (47%), Positives = 11/17 (64%), Gaps = 1/17 (5%)
Query: 745 VLMVGPPGTGK-TMLAK 760
+++VG GTGK T K
Sbjct: 14 IMVVGVNGTGKTTSCGK 30
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.2 bits (62), Expect = 3.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 745 VLMVGPPGTGKT 756
VL+VG G GKT
Sbjct: 9 VLVVGVNGVGKT 20
>d1uqwa_ c.94.1.1 (A:) Hypothetical protein YliB {Escherichia coli
[TaxId: 562]}
Length = 487
Score = 28.6 bits (62), Expect = 3.7
Identities = 5/59 (8%), Positives = 20/59 (33%), Gaps = 2/59 (3%)
Query: 687 CDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGV 745
+ + + L + + +P + + +E+ +P+ + + + G
Sbjct: 415 SNKQVDDFLAQALKTNDPAEKTRLYKAA--QDIIWQESPWIPLVVEKLVSAHSKNLTGF 471
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 27.9 bits (61), Expect = 3.9
Identities = 7/23 (30%), Positives = 13/23 (56%)
Query: 745 VLMVGPPGTGKTMLAKAVATECG 767
++++G PG GK A + + G
Sbjct: 3 IVLMGLPGAGKGTQADRIVEKYG 25
>d2d2sa1 a.118.17.2 (A:525-753) Exocyst complex component EXO84
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 229
Score = 27.9 bits (62), Expect = 4.1
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 302 EELDLPVSQRDFEEALARCNK 322
EE+D+ +++ FE A+
Sbjct: 17 EEIDIELARLRFESAVETLLD 37
>d1xoca1 c.94.1.1 (A:17-520) Oligo-peptide binding protein (OPPA)
{Bacillus subtilis [TaxId: 1423]}
Length = 504
Score = 28.5 bits (62), Expect = 4.3
Identities = 3/59 (5%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 687 CDNDLVEMLERDMVQKNPNIRWDDIAELTDAKRLLEEAVVLPMWMPEFFKGIRRPWKGV 745
+ + ++++ + + ++ +++ E+ ++ P + +G
Sbjct: 430 KNAEADKLMKDAKSISDRKQYSKEYEQI--YQKIAEDQPYTFLYYPNNHMAMPENLEGY 486
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.0 bits (61), Expect = 5.1
Identities = 6/12 (50%), Positives = 7/12 (58%)
Query: 745 VLMVGPPGTGKT 756
+M PG GKT
Sbjct: 12 TIMDLHPGAGKT 23
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 28.0 bits (61), Expect = 5.4
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 743 KGVLMVGPPGTGKTMLAKAVATEC 766
+ +L+ G GTGK++L + +A
Sbjct: 51 RHLLVNGATGTGKSVLLRELAYTG 74
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.5 bits (60), Expect = 6.5
Identities = 13/94 (13%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 730 WMPEFFKGIRRPWKGVLMVGPPGTGKTMLAKAVATECGTTFFNVCSST--------LTSK 781
++PE+F+ + + GP G+GK+ + + + S LT +
Sbjct: 15 YIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHE 74
Query: 782 YRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCS 815
+ + + + + P T + + + +
Sbjct: 75 DQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLN 108
>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium
extorquens [TaxId: 408]}
Length = 323
Score = 27.5 bits (60), Expect = 6.5
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 747 MVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYR 783
+ G PG GK+ A+ + V +
Sbjct: 56 ITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST 92
>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus
influenzae [TaxId: 727]}
Length = 158
Score = 27.0 bits (59), Expect = 6.9
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 1/67 (1%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARFYAPST 804
V + G G GKT L + + + NV S T T + F++ R P
Sbjct: 36 VYLNGDLGAGKTTLTRGM-LQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLYRLADPEE 94
Query: 805 IFIDEID 811
+ I
Sbjct: 95 LEFMGIR 101
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 27.5 bits (60), Expect = 7.1
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 745 VLMVGPPGTGKTMLAKAV 762
+ + G G+GK+++A
Sbjct: 47 LFLHGRAGSGKSVIASQA 64
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal
domain {Pyrococcus horikoshii [TaxId: 53953]}
Length = 239
Score = 27.4 bits (61), Expect = 7.2
Identities = 19/107 (17%), Positives = 43/107 (40%), Gaps = 14/107 (13%)
Query: 745 VLMVGPPGTGKTMLAKAVA-----TECGTTFFNVCSSTLTSKYRGESEKLVRLLFEMARF 799
++++GP G GKT + +A TE F + + L K R + ++F+
Sbjct: 35 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRN-----ISMVFQSYAV 89
Query: 800 YAPSTIFIDEIDSLCSRRGSESEHEASRRVKSELLVQMDGLSSAEDS 846
+ T++ E + + + E +RV+ ++ + +
Sbjct: 90 WPHMTVY--ENIAFPLKIKKFPKDEIDKRVRW--AAELLQIEELLNR 132
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 26.9 bits (59), Expect = 7.8
Identities = 2/28 (7%), Positives = 8/28 (28%)
Query: 745 VLMVGPPGTGKTMLAKAVATECGTTFFN 772
+L+ G + ++ +
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPK 45
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 27.2 bits (59), Expect = 8.2
Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 13/89 (14%)
Query: 720 LLEEAVVLPMWMPEFFKGIRRPW-------------KGVLMVGPPGTGKTMLAKAVATEC 766
L E +L ++ F K + P + P G GKT A++
Sbjct: 23 LFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFL 82
Query: 767 GTTFFNVCSSTLTSKYRGESEKLVRLLFE 795
TS ++ + +R E
Sbjct: 83 ALKGKRCYVIFPTSLLVIQAAETIRKYAE 111
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 26.7 bits (58), Expect = 9.7
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 748 VGPPGTGKTMLAKAVATECGTTFFNVC 774
VG +GKT L + + V
Sbjct: 7 VGYKHSGKTTLMEKWVAAAVREGWRVG 33
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.5 bits (57), Expect = 9.7
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 745 VLMVGPPGTGKTMLAKAVATEC 766
+L++G GKT L K +A+E
Sbjct: 19 ILLLGLDNAGKTTLLKQLASED 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.131 0.375
Gapped
Lambda K H
0.267 0.0443 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,074,152
Number of extensions: 144204
Number of successful extensions: 680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 657
Number of HSP's successfully gapped: 124
Length of query: 863
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 770
Effective length of database: 1,130,706
Effective search space: 870643620
Effective search space used: 870643620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.5 bits)