Query psy11010
Match_columns 256
No_of_seqs 291 out of 1461
Neff 10.5
Searched_HMMs 29240
Date Fri Aug 16 15:54:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11010.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11010hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3o7q_A L-fucose-proton symport 99.9 1.2E-24 4E-29 184.3 21.4 179 56-236 22-229 (438)
2 1pw4_A Glycerol-3-phosphate tr 99.9 2.8E-25 9.7E-30 188.7 17.6 185 55-242 23-212 (451)
3 4aps_A DI-OR tripeptide H+ sym 99.9 2.1E-23 7.1E-28 179.4 19.5 175 61-236 14-196 (491)
4 2gfp_A EMRD, multidrug resista 99.9 8.5E-24 2.9E-28 175.8 15.3 178 63-242 3-180 (375)
5 2xut_A Proton/peptide symporte 99.9 4.6E-22 1.6E-26 172.4 18.2 170 65-235 17-197 (524)
6 4gc0_A D-xylose-proton symport 99.9 2E-21 6.7E-26 167.0 16.6 180 59-241 11-224 (491)
7 1pw4_A Glycerol-3-phosphate tr 99.8 6.5E-19 2.2E-23 149.4 15.5 177 60-237 252-434 (451)
8 2cfq_A Lactose permease; trans 99.8 2.3E-17 7.7E-22 139.2 16.8 157 83-240 243-403 (417)
9 3o7q_A L-fucose-proton symport 99.7 8.7E-17 3E-21 135.9 18.3 164 64-231 262-427 (438)
10 2cfq_A Lactose permease; trans 99.7 1.2E-17 4E-22 140.9 5.1 168 64-232 11-183 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.6 8.8E-16 3E-20 131.8 12.0 172 68-241 291-476 (491)
12 4gc0_A D-xylose-proton symport 99.6 5.9E-15 2E-19 126.5 12.0 157 86-243 302-469 (491)
13 2gfp_A EMRD, multidrug resista 99.5 4.1E-14 1.4E-18 117.2 8.2 160 61-224 200-364 (375)
14 2xut_A Proton/peptide symporte 99.2 1.9E-11 6.5E-16 105.6 9.2 142 97-239 336-505 (524)
15 2g9p_A Antimicrobial peptide l 68.6 2.6 8.9E-05 18.7 1.3 14 115-128 2-15 (26)
16 2dw3_A Intrinsic membrane prot 50.2 27 0.00093 21.0 3.9 30 214-243 31-60 (77)
17 2nrg_A Intrinsic membrane prot 32.3 86 0.0029 19.0 4.3 31 213-243 31-61 (82)
18 4dve_A Biotin transporter BIOY 30.5 1.5E+02 0.0052 21.6 6.2 24 102-125 99-122 (198)
19 3arc_I Photosystem II reaction 22.8 86 0.0029 15.9 2.5 11 231-241 18-28 (38)
No 1
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.93 E-value=1.2e-24 Score=184.30 Aligned_cols=179 Identities=16% Similarity=0.197 Sum_probs=158.2
Q ss_pred ccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH
Q psy11010 56 ESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI 135 (256)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~ 135 (256)
+++++.+..++++.+..++......+..|.+ .+++|.+..+.+++.+++.++..++.++.|+++||+|||++++.+.++
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~ 100 (438)
T 3o7q_A 22 RSYIIPFALLCSLFFLWAVANNLNDILLPQF-QQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFL 100 (438)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHH
Confidence 3455666667777777777777777777764 788999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH---HhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh-h
Q psy11010 136 MFLSTLIF---AFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY-Q 211 (256)
Q Consensus 136 ~~~~~~~~---~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~-~ 211 (256)
.+++.+++ .++++++.++++|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..++|.+++.+. +
T Consensus 101 ~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~ 179 (438)
T 3o7q_A 101 YALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPE-SSGHFRLNLAQTFNSFGAIIAVVFGQSLILS 179 (438)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS-TTHHHHHHHHHHHHHHHHHHHHHHTTHHHHT
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999 8889999999999999999999999999999999998 99999999999999999999999999998 5
Q ss_pred ccC-------------------------chHHHHHHHHHHHHHHhHhhhe
Q psy11010 212 FVG-------------------------KTAPFLILSALALGDGCKCNYT 236 (256)
Q Consensus 212 ~~g-------------------------~~~~~~~~~~~~~~~~~~~~~~ 236 (256)
..+ ||+.|++.+++.++..++.++.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~ 229 (438)
T 3o7q_A 180 NVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLT 229 (438)
T ss_dssp SSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 9999988887777666555443
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.93 E-value=2.8e-25 Score=188.70 Aligned_cols=185 Identities=11% Similarity=0.058 Sum_probs=165.5
Q ss_pred cccchHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHH
Q psy11010 55 RESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFV 134 (256)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~ 134 (256)
++.+++.+...++..+...+....+.+..+.+ .+++ .+..+.+++.+++.++..++++++|+++||+|||++++.+.+
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~ 100 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLI 100 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHT-TSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHH
Confidence 34556677777888888888887777777776 5677 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhh
Q psy11010 135 IMFLSTLIFAF----GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY 210 (256)
Q Consensus 135 ~~~~~~~~~~~----~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~ 210 (256)
+.+++.+++++ +++++.++++|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..++|.+++++.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~-~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 179 (451)
T 1pw4_A 101 LAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQ-KERGGIVSVWNCAHNVGGGIPPLLFLLGM 179 (451)
T ss_dssp HHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTT-THHHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999998 99999999999999999999999999988
Q ss_pred hccC-chHHHHHHHHHHHHHHhHhhheeecCCC
Q psy11010 211 QFVG-KTAPFLILSALALGDGCKCNYTIVQKSS 242 (256)
Q Consensus 211 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (256)
+..| ||+.|++.+++.++..++.++..+++++
T Consensus 180 ~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~ 212 (451)
T 1pw4_A 180 AWFNDWHAALYMPAFCAILVALFAFAMMRDTPQ 212 (451)
T ss_dssp HHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSST
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHhhccCCHh
Confidence 9898 9999999998888777666666665443
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.91 E-value=2.1e-23 Score=179.36 Aligned_cols=175 Identities=16% Similarity=0.185 Sum_probs=155.1
Q ss_pred HHHHHHHHHHHHHhHhhhchhhhHHHHHhh-----hcCcchhHHHHHHHHHHHHHHhhhHHHHhhhh-cCchhHHHHHHH
Q psy11010 61 VLVIVAIALVLDNMLLTTVEDVARENRHKY-----LMGETKAVGVMFGSKAFVQLLANPLVGILTHR-VGYSLPMFTGFV 134 (256)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr-~G~r~~l~~~~~ 134 (256)
.+..+++..+...+......+.++.++.++ +|.+..+.+++.+++.++..+++++.|+++|| +|||+++..+.+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~ 93 (491)
T 4aps_A 14 GLSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGV 93 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 444555566666666666667777787777 99999999999999999999999999999999 899999999999
Q ss_pred HHHHHHHHHHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcch--hhHHHHHHHHHHHHHHhhhhhHHhhhhhc
Q psy11010 135 IMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRE--RGNAMGIALGGLALGVLIGPPFGGIMYQF 212 (256)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~--r~~~~g~~~~~~~lg~~~g~~i~~~l~~~ 212 (256)
+.+++.++++++++++.++++|++.|++.+...+...++++|++|+ ++ |+.++++++....+|..++|.+++++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 94 LIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDE-HDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp HHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSS-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCc-ccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999998 78 77888889999999999999999999999
Q ss_pred cCchHHHHHHHHHHHHHHhHhhhe
Q psy11010 213 VGKTAPFLILSALALGDGCKCNYT 236 (256)
Q Consensus 213 ~g~~~~~~~~~~~~~~~~~~~~~~ 236 (256)
.||++.|++.++..++..++.++.
T Consensus 173 ~g~~~~f~~~~~~~~~~~~~~~~~ 196 (491)
T 4aps_A 173 AGYHVAFSLAAIGMFIGLLVYYFG 196 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999888777766555443
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.91 E-value=8.5e-24 Score=175.76 Aligned_cols=178 Identities=19% Similarity=0.274 Sum_probs=160.2
Q ss_pred HHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHH
Q psy11010 63 VIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLI 142 (256)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~ 142 (256)
..+++..++..+....+.+..+.+ .+++|.++.+.+++.+.+.++..+++++.|+++||+|||+++..+.++..++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~ 81 (375)
T 2gfp_A 3 LMLVLLVAVGQMAQTIYIPAIADM-ARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLV 81 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHH-HHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHH
Confidence 345566667777777777887775 6889999999999999999999999999999999999999999999999999999
Q ss_pred HHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHHHHHH
Q psy11010 143 FAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLIL 222 (256)
Q Consensus 143 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~ 222 (256)
..++++++.+++.|++.|++.+...+...+++.|++|+ ++|++++++.+....+|..++|.+++++.+..||++.|++.
T Consensus 82 ~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~ 160 (375)
T 2gfp_A 82 AVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYER-TQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFL 160 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999999999999998 99999999999999999999999999999988999999999
Q ss_pred HHHHHHHHhHhhheeecCCC
Q psy11010 223 SALALGDGCKCNYTIVQKSS 242 (256)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~ 242 (256)
+++.++..+...+..|++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 161 LVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHCcccCC
Confidence 98888876655555665443
No 5
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.89 E-value=4.6e-22 Score=172.36 Aligned_cols=170 Identities=11% Similarity=0.055 Sum_probs=150.0
Q ss_pred HHHHHHHHHhHhhhchhhhHHHHHhhhc------CcchhHHHHHHHHHHHHHHhhhHHHHhhhhc-CchhHHHHHHHHHH
Q psy11010 65 VAIALVLDNMLLTTVEDVARENRHKYLM------GETKAVGVMFGSKAFVQLLANPLVGILTHRV-GYSLPMFTGFVIMF 137 (256)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~-G~r~~l~~~~~~~~ 137 (256)
+.+..++..+..+...+.++.++.+++| .+..+.+++.+++.++..++.++.|+++||+ |||+++..+.++.+
T Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~ 96 (524)
T 2xut_A 17 IIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYC 96 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 4444555555555566777888888899 9999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHhhc-hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHH---HHHHHHHHHhhhhhHHhhhhhcc
Q psy11010 138 LSTLIFAFGR-TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGI---ALGGLALGVLIGPPFGGIMYQFV 213 (256)
Q Consensus 138 ~~~~~~~~~~-~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~---~~~~~~lg~~~g~~i~~~l~~~~ 213 (256)
++.+++++++ +++.++++|++.|++.+...+...+++.|++|+ ++|+++.+. ++....+|..++|.+++++.+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 175 (524)
T 2xut_A 97 VGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQ-SNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNF 175 (524)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCST-TTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTS
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHHHcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999998 999999999999999999999999999999998 899876666 89999999999999999999989
Q ss_pred CchHHHHHHHHHHHHHHhHhhh
Q psy11010 214 GKTAPFLILSALALGDGCKCNY 235 (256)
Q Consensus 214 g~~~~~~~~~~~~~~~~~~~~~ 235 (256)
||++.|++.+++.++..+..++
T Consensus 176 g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 176 GAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887776555444
No 6
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.87 E-value=2e-21 Score=166.97 Aligned_cols=180 Identities=16% Similarity=0.129 Sum_probs=145.4
Q ss_pred hHHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhc--------CcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHH
Q psy11010 59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLM--------GETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMF 130 (256)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g--------~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~ 130 (256)
+...+..+++.++.+++...+...++.. .++++ .+..+.|++.+.+.+|..++++++|+++||+|||++++
T Consensus 11 ~~i~~~a~lg~~~~Gyd~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~ 89 (491)
T 4gc0_A 11 FSITLVATLGGLLFGYDTAVISGTVESL-NTVFVAPQNLSESAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLK 89 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGGTHHHH-HHHHTGGGCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 3344445666778888888777766554 44442 23457889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH------------------hhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHH
Q psy11010 131 TGFVIMFLSTLIFA------------------FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIAL 192 (256)
Q Consensus 131 ~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~ 192 (256)
++.+++.++.++++ ++++++.++++|+++|++.|...+...++++|+.|+ ++|++..++.+
T Consensus 90 ~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~~p~-~~rg~~~~~~~ 168 (491)
T 4gc0_A 90 IAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPA-HIRGKLVSFNQ 168 (491)
T ss_dssp HHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCG-GGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCH-HhhhhhHHhhh
Confidence 99999999999988 478999999999999999999999999999999998 99999999999
Q ss_pred HHHHHHHhhhhhHHhhhhhc--------cCchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010 193 GGLALGVLIGPPFGGIMYQF--------VGKTAPFLILSALALGDGCKCNYTIVQKS 241 (256)
Q Consensus 193 ~~~~lg~~~g~~i~~~l~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (256)
.+..+|..+++.++..+... .+|+..+.+..+..++..+. .+..||.+
T Consensus 169 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~peSp 224 (491)
T 4gc0_A 169 FAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLML-LYTVPESP 224 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHH-GGGSCCCH
T ss_pred hhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhh-hhcCCCCh
Confidence 99999999998888766543 24777776666666664433 34455544
No 7
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.81 E-value=6.5e-19 Score=149.44 Aligned_cols=177 Identities=15% Similarity=0.075 Sum_probs=149.7
Q ss_pred HHHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhc--CchhHHHHHHHHHH
Q psy11010 60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRV--GYSLPMFTGFVIMF 137 (256)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~--G~r~~l~~~~~~~~ 137 (256)
+.+....+..++............+.++++.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+.++..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 331 (451)
T 1pw4_A 252 KLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLV 331 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 4445555555555666666667788887777899999999999999999999999999999999 99999888877766
Q ss_pred -HHHHHHHhh--chHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHH-HHhhhhhHHhhhhhcc
Q psy11010 138 -LSTLIFAFG--RTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLAL-GVLIGPPFGGIMYQFV 213 (256)
Q Consensus 138 -~~~~~~~~~--~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~l-g~~~g~~i~~~l~~~~ 213 (256)
++.++..+. .+.+.+.+..++.|++.+...+...+++.|.+|+ ++|++++|+.+....+ |..++|.+.+++.+..
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 410 (451)
T 1pw4_A 332 TIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK-KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF 410 (451)
T ss_dssp HHHHHHTTSCCTTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCT-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHhcccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhch-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 666666665 3677777888899999998888889999999998 9999999999999999 9999999999999999
Q ss_pred CchHHHHHHHHHHHHHHhHhhhee
Q psy11010 214 GKTAPFLILSALALGDGCKCNYTI 237 (256)
Q Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~ 237 (256)
||+..|++.+++.+++.++.++..
T Consensus 411 g~~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 411 GWDGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998888888776665543
No 8
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.76 E-value=2.3e-17 Score=139.16 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=129.6
Q ss_pred hHHHHHhhhc---CcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH
Q psy11010 83 ARENRHKYLM---GETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQ 159 (256)
Q Consensus 83 ~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (256)
.+.++.+.++ .+....++..++..++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.
T Consensus 243 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (417)
T 2cfq_A 243 FANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLH 322 (417)
T ss_dssp HHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHH
T ss_pred HHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4555544443 2345668888888889999999999999999999999999888888887887777877777788888
Q ss_pred HhhhhchhhhhhhhhhhcccCcchhhHHHHH-HHHHHHHHHhhhhhHHhhhhhccCchHHHHHHHHHHHHHHhHhhheee
Q psy11010 160 GIGSSCSSVSGMGMLAERYPDDRERGNAMGI-ALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDGCKCNYTIV 238 (256)
Q Consensus 160 G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~-~~~~~~lg~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 238 (256)
+++.+...+....+++|.+|+ +.|+++.++ ++....+|..++|.++|++.+..|+...|.+.+++.+++.++.++..+
T Consensus 323 ~~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 401 (417)
T 2cfq_A 323 MFEVPFLLVGCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLS 401 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhc
Confidence 888777777778999999998 999999999 588889999999999999999888999999988888887766665555
Q ss_pred cC
Q psy11010 239 QK 240 (256)
Q Consensus 239 ~~ 240 (256)
++
T Consensus 402 ~~ 403 (417)
T 2cfq_A 402 GP 403 (417)
T ss_dssp CS
T ss_pred CC
Confidence 43
No 9
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.75 E-value=8.7e-17 Score=135.91 Aligned_cols=164 Identities=12% Similarity=-0.090 Sum_probs=134.4
Q ss_pred HHHHHHHHHHhHhhhchhhhHHH-HHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHH
Q psy11010 64 IVAIALVLDNMLLTTVEDVAREN-RHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLI 142 (256)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~ 142 (256)
...+..++............+.+ +++.+|.+..+.+++.+...++..++.++.|+++||+|||+++..+.++.+++.++
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~ 341 (438)
T 3o7q_A 262 WAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLI 341 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33344444444444555667778 77777999999999999999999999999999999999999999999999999888
Q ss_pred HHhhchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccC-chHHHHH
Q psy11010 143 FAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG-KTAPFLI 221 (256)
Q Consensus 143 ~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g-~~~~~~~ 221 (256)
..+.++.+.++ ..++.|++.+...+...++..|.+|+ + ++++.++.. ...+|..++|.+.|++.+..| ++..|++
T Consensus 342 ~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~ 417 (438)
T 3o7q_A 342 SAFAGGHVGLI-ALTLCSAFMSIQYPTIFSLGIKNLGQ-D-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELI 417 (438)
T ss_dssp HHHCCHHHHHH-HHHHHHHHHTTHHHHHHHHHHSSCGG-G-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHH
T ss_pred HHHcCCcHHHH-HHHHHHHHHHHHHHHHHHHHHhhccc-c-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 88887776544 44888999999999999999999986 5 888888776 566999999999999999998 9999987
Q ss_pred HHHHHHHHHh
Q psy11010 222 LSALALGDGC 231 (256)
Q Consensus 222 ~~~~~~~~~~ 231 (256)
.++..++..+
T Consensus 418 ~~~~~~~~~~ 427 (438)
T 3o7q_A 418 PALCFAVIFI 427 (438)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7666555433
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.69 E-value=1.2e-17 Score=140.89 Aligned_cols=168 Identities=18% Similarity=0.213 Sum_probs=118.8
Q ss_pred HHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHH---
Q psy11010 64 IVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST--- 140 (256)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~--- 140 (256)
.+....+..........++++.++++++|.++.+.|++.+.+.++..++++++|+++||+|||++++.+.++.++..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~ 90 (417)
T 2cfq_A 11 MFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPF 90 (417)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 34444444445556667888988888899999999999999999999999999999999999999998887765432
Q ss_pred HHHHhhchHH-HHHHHHHHHHhhhhchhhhhhhhhhhcccC-cchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCchHH
Q psy11010 141 LIFAFGRTYG-VLFLARSLQGIGSSCSSVSGMGMLAERYPD-DRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAP 218 (256)
Q Consensus 141 ~~~~~~~~~~-~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~-~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~~~~ 218 (256)
....+.+... .++..+.+.|++.+...+.....+.++.++ .++++...|..+....+|..++|.+++++.+ .+|++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~~-~~~~~~ 169 (417)
T 2cfq_A 91 FIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT-INNQFV 169 (417)
T ss_dssp HHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHHH-HCSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHH-hchhHH
Confidence 1112222211 233455566666655555444555555432 0355677788878889999999999999987 589999
Q ss_pred HHHHHHHHHHHHhH
Q psy11010 219 FLILSALALGDGCK 232 (256)
Q Consensus 219 ~~~~~~~~~~~~~~ 232 (256)
|++.++..++..+.
T Consensus 170 f~~~~~~~~~~~~~ 183 (417)
T 2cfq_A 170 FWLGSGCALILAVL 183 (417)
T ss_dssp HTTTTTTTTTHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 98776665443333
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.65 E-value=8.8e-16 Score=131.78 Aligned_cols=172 Identities=15% Similarity=0.041 Sum_probs=132.6
Q ss_pred HHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHH-----HHHHHHHHHHHH
Q psy11010 68 ALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMF-----TGFVIMFLSTLI 142 (256)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~-----~~~~~~~~~~~~ 142 (256)
..+.............+.+..+.++.+....+++.+...++..++.++.|++.||+|||+... .+.++.+++.++
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~ 370 (491)
T 4aps_A 291 AAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLL 370 (491)
T ss_dssp HHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHH
Confidence 333334444445556677777767777677888999999999999999999999999986654 677777777666
Q ss_pred HHhhc---------hHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc
Q psy11010 143 FAFGR---------TYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV 213 (256)
Q Consensus 143 ~~~~~---------~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~ 213 (256)
..+.. +.+.+.+..++.|++.+...+...+++.|.+|+ ++|+++.|+.+....+|..++|.+.+++.+.
T Consensus 371 ~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~- 448 (491)
T 4aps_A 371 MAIPGALYGTSGKVSPLWLVGSWALVILGEMLISPVGLSVTTKLAPK-AFNSQMMSMWFLSSSVGSALNAQLVTLYNAK- 448 (491)
T ss_dssp THHHHHHCCCCTTCCTHHHHHHHHHHHHHHHTTTTHHHHHHHHHTTT-TCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-
T ss_pred HHHHHHhcCCCCCccHHHHHHHHHHHHHHHHHHhHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-
Confidence 65532 666777888899999999999999999999998 9999999999999999999999999988764
Q ss_pred CchHHHHHHHHHHHHHHhHhhheeecCC
Q psy11010 214 GKTAPFLILSALALGDGCKCNYTIVQKS 241 (256)
Q Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (256)
++.+.|.+.+++.++..++.++..++.+
T Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 449 SEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp STTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777888888888877776666555443
No 12
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.60 E-value=5.9e-15 Score=126.54 Aligned_cols=157 Identities=13% Similarity=0.037 Sum_probs=118.2
Q ss_pred HHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHHHHHHHHHHHhh----chHHHHHHHHHHHHh
Q psy11010 86 NRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG----RTYGVLFLARSLQGI 161 (256)
Q Consensus 86 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l~G~ 161 (256)
.+.+..+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. .+....++..++...
T Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 381 (491)
T 4gc0_A 302 EVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVA 381 (491)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 3456677777777778888889999999999999999999999999888888777655432 112222222222222
Q ss_pred h-hhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhh------ccCchHHHHHHHHHHHHHHhHhh
Q psy11010 162 G-SSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ------FVGKTAPFLILSALALGDGCKCN 234 (256)
Q Consensus 162 ~-~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~------~~g~~~~~~~~~~~~~~~~~~~~ 234 (256)
+ .....+....+.+|.+|. +.|++++|+.+....+|.++++.+...+.+ ..++...|++.++++++..++.+
T Consensus 382 ~~~~~~~~~~~~~~~E~fPt-~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~ 460 (491)
T 4gc0_A 382 AFAMSWGPVCWVLLSEIFPN-AIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMW 460 (491)
T ss_dssp HHHTTTTHHHHHHHHHSSCT-TTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhCCH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2 223446667899999998 999999999999999999998888766543 34677789999999999888888
Q ss_pred heeecCCCC
Q psy11010 235 YTIVQKSSS 243 (256)
Q Consensus 235 ~~~~~~~~~ 243 (256)
++.||++.+
T Consensus 461 ~~~PETkg~ 469 (491)
T 4gc0_A 461 KFVPETKGK 469 (491)
T ss_dssp HHCCCCTTC
T ss_pred heecCCCCC
Confidence 888887654
No 13
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.50 E-value=4.1e-14 Score=117.25 Aligned_cols=160 Identities=13% Similarity=0.057 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHHhHhhhchhhhHHHHHhhhcCcchhHHHHHHHHHHHHHHhhhHHHHhhhhcCchhHHHHHHHH-HHHH
Q psy11010 61 VLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVI-MFLS 139 (256)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~dr~G~r~~l~~~~~~-~~~~ 139 (256)
.+....+..++............|.+.++.+|.++.+.+++.+...++..++.++.+++.||++++ +..+..+ ...+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~ 277 (375)
T 2gfp_A 200 GFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAG 277 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 344444444555555555666677777777899999999999999999999999999999999873 2333332 2222
Q ss_pred HH--HHHh--hchHHHHHHHHHHHHhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhccCc
Q psy11010 140 TL--IFAF--GRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGK 215 (256)
Q Consensus 140 ~~--~~~~--~~~~~~~~~~~~l~G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~g~ 215 (256)
.. .... .++.+.+++..++.|++.+...+...+++.|.+| ++|+++.|+.+....+|..++|.+.+.+.+..+|
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~p--~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~ 355 (375)
T 2gfp_A 278 LLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFP--FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQG 355 (375)
T ss_dssp SSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTHHHHHTHHH--HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHH
T ss_pred HHHHHHhhhccccHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCC--cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 22 2222 2366667778889999999999999999999996 6899999999999999999999999999888778
Q ss_pred hHHHHHHHH
Q psy11010 216 TAPFLILSA 224 (256)
Q Consensus 216 ~~~~~~~~~ 224 (256)
...+.+.++
T Consensus 356 ~~~~~~~~~ 364 (375)
T 2gfp_A 356 SLGLLMTLM 364 (375)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 877766443
No 14
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.24 E-value=1.9e-11 Score=105.63 Aligned_cols=142 Identities=15% Similarity=0.109 Sum_probs=102.8
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHhh----hhcCc----hhHHHHHHHHHHHHHHHHHhh---------chHHHHHHHHHHH
Q psy11010 97 AVGVMFGSKAFVQLLANPLVGILT----HRVGY----SLPMFTGFVIMFLSTLIFAFG---------RTYGVLFLARSLQ 159 (256)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~g~l~----dr~G~----r~~l~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~l~ 159 (256)
..+++.....++..+..++.+++. ||.|+ ++.+..+.++.+++.++.++. .+.+.+++..++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 415 (524)
T 2xut_A 336 EPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTIQLMMDGGSALSIFWQILPYALL 415 (524)
T ss_dssp CHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTTTTTTTTTCCCCSHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 456666666677777777777764 55543 356677888888887776653 3666777888999
Q ss_pred HhhhhchhhhhhhhhhhcccCcchhhHHHHHHHHHHHHHHhhhhhHHhhhhhcc--Cc---------hHHHHHHHHHHHH
Q psy11010 160 GIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV--GK---------TAPFLILSALALG 228 (256)
Q Consensus 160 G~~~g~~~~~~~~~~~~~~~~~~~r~~~~g~~~~~~~lg~~~g~~i~~~l~~~~--g~---------~~~~~~~~~~~~~ 228 (256)
|++.+...+...+++.|.+|+ ++|++++|+.+....+|..++|.+.+.+.+.. +| +..|++.+++.++
T Consensus 416 g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (524)
T 2xut_A 416 TFGEVLVSATGLEFAYSQAPK-AMKGTIMSFWTLSVTVGNLWVLLANVSVKSPTVTEQIVQTGMSVTAFQMFFFAGFAIL 494 (524)
T ss_dssp HHHHHHHHHHHTTTHHHHCCT-TCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcH-HHHhHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHH
Confidence 999999999999999999998 99999999999999999999999999988732 23 3336777777777
Q ss_pred HHhHhhheeec
Q psy11010 229 DGCKCNYTIVQ 239 (256)
Q Consensus 229 ~~~~~~~~~~~ 239 (256)
..++.++..++
T Consensus 495 ~~~~~~~~~~~ 505 (524)
T 2xut_A 495 AAIVFALYARS 505 (524)
T ss_dssp HHHHHC-----
T ss_pred HHHHHHHHHHH
Confidence 66655554443
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=68.60 E-value=2.6 Score=18.73 Aligned_cols=14 Identities=29% Similarity=0.394 Sum_probs=11.4
Q ss_pred HHHHhhhhcCchhH
Q psy11010 115 LVGILTHRVGYSLP 128 (256)
Q Consensus 115 ~~g~l~dr~G~r~~ 128 (256)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999854
No 16
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=50.16 E-value=27 Score=20.99 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=15.3
Q ss_pred CchHHHHHHHHHHHHHHhHhhheeecCCCC
Q psy11010 214 GKTAPFLILSALALGDGCKCNYTIVQKSSS 243 (256)
Q Consensus 214 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (256)
||..++.+...+.++++-.+-.++|++++.
T Consensus 31 g~AAv~f~~~~~~lv~l~~iG~~LPE~Sr~ 60 (77)
T 2dw3_A 31 GWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 60 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCTTTTCSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 455555554444444444444566665544
No 17
>2nrg_A Intrinsic membrane protein PUFX; BENT transmembrane helix, photosynthesis,membrane protein; NMR {Rhodobacter sphaeroides}
Probab=32.30 E-value=86 Score=19.03 Aligned_cols=31 Identities=10% Similarity=0.005 Sum_probs=17.0
Q ss_pred cCchHHHHHHHHHHHHHHhHhhheeecCCCC
Q psy11010 213 VGKTAPFLILSALALGDGCKCNYTIVQKSSS 243 (256)
Q Consensus 213 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (256)
-||..++.+...+.+++.-.+-..+|++++.
T Consensus 31 AG~AAv~fl~~~~~lv~l~~iG~~LPE~Sr~ 61 (82)
T 2nrg_A 31 AGWAGGVFFGTLLLIGFFRVVGRMLPIQENQ 61 (82)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHSSTTTTTC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhCchhccc
Confidence 3466666655555555554555566665543
No 18
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=30.45 E-value=1.5e+02 Score=21.59 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhHHHHhhhhcCc
Q psy11010 102 FGSKAFVQLLANPLVGILTHRVGY 125 (256)
Q Consensus 102 ~~~~~~~~~~~~~~~g~l~dr~G~ 125 (256)
..-|.++..++..+.|++.||..+
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~ 122 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKI 122 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTG
T ss_pred hhHHHHHHHHHHHHHHHHHHHccc
Confidence 345566777778888888888653
No 19
>3arc_I Photosystem II reaction center protein I; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_I* 2axt_I* 3bz1_I* 3bz2_I* 3kzi_I* 3prq_I* 3prr_I* 3a0b_I* 3a0h_I*
Probab=22.84 E-value=86 Score=15.87 Aligned_cols=11 Identities=0% Similarity=-0.372 Sum_probs=4.1
Q ss_pred hHhhheeecCC
Q psy11010 231 CKCNYTIVQKS 241 (256)
Q Consensus 231 ~~~~~~~~~~~ 241 (256)
+.++-++.+.+
T Consensus 18 LFiFGfLsnDP 28 (38)
T 3arc_I 18 LFVFGFLSGDP 28 (38)
T ss_dssp HHHHHHHTTGG
T ss_pred HHHccccCCCC
Confidence 33333333333
Done!