RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy11010
(256 letters)
>gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein.
Length = 141
Score = 124 bits (313), Expect = 6e-36
Identities = 57/132 (43%), Positives = 81/132 (61%), Gaps = 1/132 (0%)
Query: 99 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL 158
G++ A QL+ +PL G+LT R G + G I LST +FA VL +AR L
Sbjct: 1 GLLLAGYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFL 60
Query: 159 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAP 218
QG G++ + V+G ++A+ YP + ERG A+G+ G+ALG L+GPP GG++ QF+G AP
Sbjct: 61 QGFGAAFALVAGAALIADIYPPE-ERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAP 119
Query: 219 FLILSALALGDG 230
FL L+ LAL
Sbjct: 120 FLFLAILALAAF 131
>gnl|CDD|119392 cd06174, MFS, The Major Facilitator Superfamily (MFS) is a large
and diverse group of secondary transporters that
includes uniporters, symporters, and antiporters. MFS
proteins facilitate the transport across cytoplasmic or
internal membranes of a variety of substrates including
ions, sugar phosphates, drugs, neurotransmitters,
nucleosides, amino acids, and peptides. They do so using
the electrochemical potential of the transported
substrates. Uniporters transport a single substrate,
while symporters and antiporters transport two
substrates in the same or in opposite directions,
respectively, across membranes. MFS proteins are
typically 400 to 600 amino acids in length, and the
majority contain 12 transmembrane alpha helices (TMs)
connected by hydrophilic loops. The N- and C-terminal
halves of these proteins display weak similarity and may
be the result of a gene duplication/fusion event. Based
on kinetic studies and the structures of a few bacterial
superfamily members, GlpT (glycerol-3-phosphate
transporter), LacY (lactose permease), and EmrD
(multidrug transporter), MFS proteins are thought to
function through a single substrate binding site,
alternating-access mechanism involving a rocker-switch
type of movement. Bacterial members function primarily
for nutrient uptake, and as drug-efflux pumps to confer
antibiotic resistance. Some MFS proteins have medical
significance in humans such as the glucose transporter
Glut4, which is impaired in type II diabetes, and
glucose-6-phosphate transporter (G6PT), which causes
glycogen storage disease when mutated.
Length = 352
Score = 85.8 bits (213), Expect = 2e-19
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 1/131 (0%)
Query: 97 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 156
G++ + + L + L G L+ R G + G ++ L +L+ AF + +L + R
Sbjct: 35 QAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGR 94
Query: 157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 216
L G+G + ++AE +P +ERG A+G+ G LG L+GP GG++ + +G
Sbjct: 95 FLLGLGGGALYPAAAALIAEWFP-PKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWR 153
Query: 217 APFLILSALAL 227
FLIL+ L L
Sbjct: 154 WLFLILAILGL 164
Score = 65.0 bits (159), Expect = 3e-12
Identities = 42/170 (24%), Positives = 74/170 (43%), Gaps = 2/170 (1%)
Query: 59 RLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGI 118
+L+++A+A L + + + L G++ +L L G+
Sbjct: 174 LRLLLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGALLGGL 233
Query: 119 LTHRVG-YSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAER 177
L+ R+G L + G ++ L L+ A + +L +A L G G + + + + +E
Sbjct: 234 LSDRLGRRRLLLLIGLLLAALGLLLLALAPSLALLLVALLLLGFGLGFAFPALLTLASEL 293
Query: 178 YPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALAL 227
P RG A G+ +LG +GP G++ G FLIL+ALAL
Sbjct: 294 APP-EARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALAL 342
Score = 38.4 bits (90), Expect = 0.002
Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 4/135 (2%)
Query: 95 TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG-RTYGVLF 153
+A+G+ LL L G+L +G+ ++ L L+ F R +L
Sbjct: 122 GRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLLRLLLLLA 181
Query: 154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV 213
LA L G L E G+ L LG ++G GG++ +
Sbjct: 182 LAFFLLSFGYYGLLTYLPLYLQEVLGLS---AAEAGLLLSLFGLGGILGALLGGLLSDRL 238
Query: 214 GKTAPFLILSALALG 228
G+ L++ L
Sbjct: 239 GRRRLLLLIGLLLAA 253
Score = 28.0 bits (63), Expect = 5.0
Identities = 16/86 (18%), Positives = 26/86 (30%), Gaps = 7/86 (8%)
Query: 60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGIL 119
L+L+ + +L E E R A G+ + L L G+L
Sbjct: 272 LLLLGFGLGFAFPALLTLASELAPPEAR-------GTASGLFNTFGSLGGALGPLLAGLL 324
Query: 120 THRVGYSLPMFTGFVIMFLSTLIFAF 145
GY + L+ L+
Sbjct: 325 LDTGGYGGVFLILAALALLAALLLLL 350
>gnl|CDD|219516 pfam07690, MFS_1, Major Facilitator Superfamily.
Length = 346
Score = 82.9 bits (205), Expect = 2e-18
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 1/131 (0%)
Query: 97 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 156
+G++ + + LA PL G L+ R G + G ++ L L+ F + +L + R
Sbjct: 33 EIGLLLTAFSLGYALAQPLAGRLSDRFGRRRVLLIGLLLFALGLLLLLFASSLWLLLVLR 92
Query: 157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 216
LQG+G + ++A+ +P ERG A+G+ G LG +GP GG++ G
Sbjct: 93 VLQGLGGGALFPAAAALIADWFP-PEERGRALGLLSAGFGLGAALGPLLGGLLASLFGWR 151
Query: 217 APFLILSALAL 227
A FLIL+ LAL
Sbjct: 152 AAFLILAILAL 162
Score = 42.8 bits (101), Expect = 9e-05
Identities = 25/110 (22%), Positives = 48/110 (43%), Gaps = 4/110 (3%)
Query: 97 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF---GRTYGVLF 153
G++ G + + L+G L+ R+G + +++ L+ L A + L
Sbjct: 238 LAGLLLGLAGLLGAIGRLLLGRLSDRLGRRRRLLLALLLLILAALGLALLSLTESSLWLL 297
Query: 154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGP 203
+A L G G+ + ++++ P ERG A G+ +LG +GP
Sbjct: 298 VALLLLGFGAGLVFPALNALVSDLAP-KEERGTASGLYNTAGSLGGALGP 346
>gnl|CDD|225371 COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport
and metabolism].
Length = 394
Score = 63.0 bits (154), Expect = 2e-11
Identities = 38/133 (28%), Positives = 60/133 (45%), Gaps = 1/133 (0%)
Query: 95 TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFL 154
A G + + A L PL+ +LT R+ + + +S L+ A ++ VL L
Sbjct: 47 EGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLL 106
Query: 155 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG 214
AR+L G+ + A P + RG A+ + GL L ++G P G + Q G
Sbjct: 107 ARALAGLAHGVFWSIAAALAARLVPPGK-RGRALALVFTGLTLATVLGVPLGTFLGQLFG 165
Query: 215 KTAPFLILSALAL 227
A FL ++ LAL
Sbjct: 166 WRATFLAIAVLAL 178
Score = 37.2 bits (87), Expect = 0.006
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 2/119 (1%)
Query: 110 LLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVS 169
+ N L G L R + ++ + G + + L G S +
Sbjct: 261 FIGNLLGGRLADRGPRRALIAALLLLALALLALTFTGASPALALALLFLWGFAFSPALQG 320
Query: 170 GMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALG 228
LA PD + ++ +A LG+ +G GG++ +G A + +AL L
Sbjct: 321 LQTRLARLAPDAADLAGSLNVA--AFNLGIALGAALGGLVLDALGYAATGWVGAALLLL 377
>gnl|CDD|233174 TIGR00893, 2A0114, D-galactonate transporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 399
Score = 47.3 bits (113), Expect = 3e-06
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 1/129 (0%)
Query: 99 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL 158
G +F + ++ ++ G L R G + VI + T + AF Y L++ R L
Sbjct: 32 GYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVL 91
Query: 159 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAP 218
G + + ++A +P ER A+ I LG +IG P G +
Sbjct: 92 LGAAEAPFFPGIILIVASWFP-ASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWA 150
Query: 219 FLILSALAL 227
F+I L +
Sbjct: 151 FIIEGVLGI 159
Score = 27.7 bits (62), Expect = 7.2
Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 97 AVGVMFGSKAFVQLLANPLVG-ILTHRVGYSLPMFTGFVIMFLSTLIFAF 145
AV + ++ ++ PLVG IL H + G + + L F
Sbjct: 119 AVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKF 168
>gnl|CDD|223553 COG0477, ProP, Permeases of the major facilitator superfamily
[Carbohydrate transport and metabolism / Amino acid
transport and metabolism / Inorganic ion transport and
metabolism / General function prediction only].
Length = 338
Score = 46.6 bits (109), Expect = 5e-06
Identities = 38/135 (28%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 97 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGV--LFL 154
G++ + + + L G L R G + G ++ L TL+ A G+ L +
Sbjct: 40 LYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLI 99
Query: 155 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGI-ALGGLALGVLIGPPFGGIMYQFV 213
R LQG+G +L+E +P+ ERG A+G+ LG ALG+ +GP G++ +
Sbjct: 100 LRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGAL 159
Query: 214 GKTAPFLILSALALG 228
L A LG
Sbjct: 160 LWGWRAAFLLAALLG 174
>gnl|CDD|233171 TIGR00890, 2A0111, oxalate/formate antiporter family transporter.
This subfamily belongs to the major facilitator family.
Members include the oxalate/formate antiporter of
Oxalobacter formigenes, where one substrate is
decarboxylated in the cytosol into the other to consume
a proton and drive an ion gradient [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 377
Score = 45.1 bits (107), Expect = 2e-05
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 2/131 (1%)
Query: 97 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 156
AV + F ++ P+ G+L + G G ++ L +A + L+L
Sbjct: 39 AVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTY 98
Query: 157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 216
L G + + + +PD +RG A GI +GG LG I P + G
Sbjct: 99 GLASAGVGIAYGIALNTAVKWFPD--KRGLASGIIIGGYGLGSFILSPLITSVINLEGVP 156
Query: 217 APFLILSALAL 227
A F+ + + L
Sbjct: 157 AAFIYMGIIFL 167
>gnl|CDD|233172 TIGR00891, 2A0112, putative sialic acid transporter. [Transport
and binding proteins, Carbohydrates, organic alcohols,
and acids].
Length = 405
Score = 42.6 bits (100), Expect = 1e-04
Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 5/120 (4%)
Query: 95 TKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFL 154
T + + + + G+ R G LPM T V+ TL F Y +F+
Sbjct: 46 TVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFI 105
Query: 155 ARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVG 214
AR + GIG S + E +P R A G+ + G A+G + +Y V
Sbjct: 106 ARLVIGIGMGGEYGSSAAYVIESWPKHL-RNKASGLLISGYAVGAV----VAAQVYSLVV 160
>gnl|CDD|233099 TIGR00710, efflux_Bcr_CflA, drug resistance transporter, Bcr/CflA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 12 membrane-spanning regions. Members with known
activity include Bcr (bicyclomycin resistance protein)
in E. coli, Flor (chloramphenicol and florfenicol
resistance) in Salmonella typhimurium DT104, and CmlA
(chloramphenicol resistance) in Pseudomonas sp. plasmid
R1033.
Length = 385
Score = 41.6 bits (98), Expect = 2e-04
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 5/122 (4%)
Query: 106 AFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSC 165
A QLL G L+ R G + G I LS+L A L + R +Q G+S
Sbjct: 54 AAGQLL----WGPLSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASA 109
Query: 166 SSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSAL 225
SV ++ + YP + E I + LAL + P GG + ++ A F LS
Sbjct: 110 GSVISQALVRDIYPGE-ELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLA 168
Query: 226 AL 227
+
Sbjct: 169 GI 170
>gnl|CDD|183259 PRK11652, emrD, multidrug resistance protein D; Provisional.
Length = 394
Score = 41.4 bits (98), Expect = 3e-04
Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 9/116 (7%)
Query: 117 GILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAE 176
G L+ RVG + G I L TL+ F + VL A ++QG+G+ G++A
Sbjct: 64 GPLSDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVG-----GVMAR 118
Query: 177 RYPDDRERGNAMGIALGGLALGVLIGP---PF-GGIMYQFVGKTAPFLILSALALG 228
P D G + A L +G+L+ P P GG++ G A +L L L G
Sbjct: 119 TLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAG 174
>gnl|CDD|233173 TIGR00892, 2A0113, monocarboxylate transporter 1. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 455
Score = 41.3 bits (97), Expect = 3e-04
Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 28/157 (17%)
Query: 106 AFVQLLANPLVGIL--THRVGYSLPMFTGFVIMF--LSTLIFAFGRTYGVL-----FLAR 156
FV + A P G++ + + F ++F L+ L+ A Y L F
Sbjct: 286 GFVDIFARPSCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCALAGDYTGLVIYCIFFGL 345
Query: 157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGG--------- 207
S +G+ V + A+R+ +A+G+ VLIGPP G
Sbjct: 346 SFGSVGALLFEVLMDLVGAQRFS------SAVGLVTIVECCAVLIGPPLAGRLVDATKNY 399
Query: 208 -IMYQFVGKTAPFLILSALALGDGCKCNYTIVQKSSS 243
++ G ++ + L L G NY ++ K
Sbjct: 400 KYIFYASGS---IVVSAGLFLAIGNYINYRLLAKEQK 433
Score = 29.3 bits (66), Expect = 2.0
Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 4/123 (3%)
Query: 112 ANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFL-ARSLQGIGSSCSSVSG 170
P+ IL +R G + G ++ L ++ +F L+L A + G+G + +
Sbjct: 70 GGPISSILVNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPS 129
Query: 171 MGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALGDG 230
+ ML + + R R A G+A+ G + + P +++ G FLIL L L
Sbjct: 130 LTMLGKYF--YRRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLL-HC 186
Query: 231 CKC 233
C C
Sbjct: 187 CVC 189
>gnl|CDD|184957 PRK14995, PRK14995, methyl viologen resistance protein SmvA;
Provisional.
Length = 495
Score = 39.3 bits (92), Expect = 0.001
Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 117 GILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAE 176
G L R+G+ + G + L++L AF T L R+L IG++ + + +
Sbjct: 62 GALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRA 121
Query: 177 RYPDDRERGNAMGI--ALGGLALGVLIGPPFGGIMYQFVGKTAPFLI 221
+ ++++R A+G+ A+G G GP GGI+ + + FLI
Sbjct: 122 TFTEEKQRNMALGVWAAVGS--GGAAFGPLVGGILLEHFYWGSVFLI 166
>gnl|CDD|129794 TIGR00711, efflux_EmrB, drug resistance transporter, EmrB/QacA
subfamily. This subfamily of drug efflux proteins, a
part of the major faciliator family, is predicted to
have 14 potential membrane-spanning regions. Members
with known activities include EmrB (multiple drug
resistance efflux pump) in E. coli, FarB (antibacterial
fatty acid resistance) in Neisseria gonorrhoeae, TcmA
(tetracenomycin C resistance) in Streptomyces
glaucescens, etc. In most cases, the efflux pump is
described as having a second component encoded in the
same operon, such as EmrA of E. coli [Cellular
processes, Toxin production and resistance, Transport
and binding proteins, Other].
Length = 485
Score = 38.5 bits (90), Expect = 0.002
Identities = 27/97 (27%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 114 PLVGILTHRVGYSLPMFTGFVIMF-LSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMG 172
PL G L R G + +F F L +L+ ++ + R +QG G
Sbjct: 55 PLTGWLAKRFG-TRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFS 113
Query: 173 MLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIM 209
L YP ++ RG AM I L VL+ P G +
Sbjct: 114 TLLNIYPPEK-RGRAMAI----WGLTVLVAPALGPTL 145
Score = 37.0 bits (86), Expect = 0.008
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 106 AFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLA----RSLQGI 161
+L++P+ G + ++ + G ++ + AF T FLA + ++G
Sbjct: 301 GLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFTFTPDTPFLAIALPQFIRGF 360
Query: 162 GSSCS 166
G C
Sbjct: 361 GMGCF 365
>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate
cotransporter. [Transport and binding proteins,
Anions].
Length = 465
Score = 37.8 bits (88), Expect = 0.004
Identities = 29/116 (25%), Positives = 51/116 (43%), Gaps = 9/116 (7%)
Query: 99 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLI-----FAFGRTYGVLF 153
G++ S + Q++ VG L + Y G MFLS++I +A G ++
Sbjct: 79 GLILSSHFYGQIIIQIPVGYLAGK--YVFKWSIGIG-MFLSSVISIVIPWAAGGGIALVV 135
Query: 154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIM 209
R +QG+ S + ++ + P +ER +G++ G LG I P G +
Sbjct: 136 FCRVIQGLAQGSVSPATHKIIVKWAPP-KERSRLLGMSTSGFQLGTFIFLPISGWL 190
>gnl|CDD|182502 PRK10504, PRK10504, putative transporter; Provisional.
Length = 471
Score = 37.0 bits (86), Expect = 0.007
Identities = 34/108 (31%), Positives = 49/108 (45%), Gaps = 1/108 (0%)
Query: 114 PLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGM 173
P G L RVG FT V+ L +L A T L LAR LQG+G + G
Sbjct: 63 PASGWLADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLT 122
Query: 174 LAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLI 221
+ + P ++ + L G +G L+GP GG++ ++ FLI
Sbjct: 123 VMKIVPREQYMAAMTFVTLPG-QVGPLLGPALGGLLVEYASWHWIFLI 169
>gnl|CDD|222060 pfam13347, MFS_2, MFS/sugar transport protein. This family is part
of the major facilitator superfamily of membrane
transport proteins.
Length = 425
Score = 36.8 bits (86), Expect = 0.007
Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 19/150 (12%)
Query: 97 AVGVMFGSKAFVQLLANPLVGILTHR------------VGYSLPMFTGFVIMFLSTLIFA 144
AVG +F +P+VG + R + ++P+ V++F + +
Sbjct: 36 AVGTIFLVARIWDAFTDPIVGAIIDRTRTRWGKFRPWLLIGAIPLAISLVLLFATPFGLS 95
Query: 145 FGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPP 204
F+ L G+ + ++ ++ D +ER + G +G L+
Sbjct: 96 MTAKLIYAFITYILLGLAYTFVNIPYWSLIPVLTRDPKERTSLASYRRIGATIGGLLVAV 155
Query: 205 FGGIMYQFVGKTAP-------FLILSALAL 227
+ +G LI++ LA+
Sbjct: 156 IAPPLVALLGGGNGAKGYFLAALIIAILAV 185
Score = 33.7 bits (78), Expect = 0.079
Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 2/90 (2%)
Query: 89 KYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRT 148
Y++G V+ +L PL L R G G ++ + ++ F
Sbjct: 250 TYVLGNAGLFSVLLLIGTIAAILGAPLWPWLAKRFGKKRTFLLGMLLAAIGLVLLFFLPP 309
Query: 149 YGV--LFLARSLQGIGSSCSSVSGMGMLAE 176
+ + L GIG +++ MLA+
Sbjct: 310 GSLWLFLVLVVLAGIGLGLATLLPWAMLAD 339
>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter.
Length = 449
Score = 35.3 bits (82), Expect = 0.024
Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 115 LVGILTHRVGYSLPMFTGFVIMFLSTLI--FAFGRTYGVLFLARSLQGIGSSCSSV 168
G L R G + G V+ + L+ FA G+++ +L + R + G+G SV
Sbjct: 65 FAGKLGDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISV 120
>gnl|CDD|235348 PRK05122, PRK05122, major facilitator superfamily transporter;
Provisional.
Length = 399
Score = 35.2 bits (82), Expect = 0.024
Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 25/146 (17%)
Query: 98 VGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLI----FAFGR----TY 149
G++ + LL+ P G +G + G LS L+ +
Sbjct: 53 AGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSL 112
Query: 150 GVLFLARSLQGIGSS----CSSVSGMGMLAERYPDDRERGNAM---GIAL-GGLALGVLI 201
+L L R L GIG S S + G+G + + G + GIA G LA I
Sbjct: 113 LLLLLGRLLLGIGESLAGTGSILWGIGRVGALHT-----GRVISWNGIATYGALA----I 163
Query: 202 GPPFGGIMYQFVGKTAPFLILSALAL 227
G P G ++Y + G L++ LAL
Sbjct: 164 GAPLGVLLYHWGGLAGLGLLIMLLAL 189
>gnl|CDD|179668 PRK03893, PRK03893, putative sialic acid transporter; Provisional.
Length = 496
Score = 35.1 bits (81), Expect = 0.028
Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 10/120 (8%)
Query: 104 SKAFV-QLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIG 162
S AF+ + L+G + R G L M V+ + TL F Y LF+AR + G+G
Sbjct: 62 SAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMG 121
Query: 163 SSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGV--------LIGPPFGGIMYQFVG 214
+ S + E +P R A G + G ++G L+ P +G F+G
Sbjct: 122 MAGEYGSSATYVIESWP-KHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIG 180
>gnl|CDD|182924 PRK11043, PRK11043, putative transporter; Provisional.
Length = 401
Score = 34.1 bits (79), Expect = 0.054
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 4/77 (5%)
Query: 106 AFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSC 165
A QLL PL R G + G + L +L + + L + R +Q +G
Sbjct: 55 ALGQLLWGPLS----DRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCS 110
Query: 166 SSVSGMGMLAERYPDDR 182
++V ++ +RYP +
Sbjct: 111 AAVIWQALVIDRYPAQK 127
>gnl|CDD|225179 COG2270, COG2270, Permeases of the major facilitator superfamily
[General function prediction only].
Length = 438
Score = 33.8 bits (78), Expect = 0.066
Identities = 40/152 (26%), Positives = 56/152 (36%), Gaps = 13/152 (8%)
Query: 95 TKAVGVMFGSKAFVQLLANPLVGIL---THRVGYSLPMFTGFVIMFLSTLIFAFGRTY-- 149
T G + L P++G + FT I+ L F +Y
Sbjct: 57 TAYWGYASAIAGLLIALLAPILGTIADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLL 116
Query: 150 -GVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRE-RGNAMGIALGGL-ALGVLIGPPFG 206
+LFL L IG S+V ML D R + +G ALG L ++ +LI G
Sbjct: 117 LLLLFLI--LASIGFEFSNVFYDSMLPRLTTKDNMGRISGLGWALGYLGSVILLIFVVLG 174
Query: 207 GIMYQFVGKTAPFLILSALALGDGCKCNYTIV 238
+ Q G T +IL L DG T +
Sbjct: 175 FALGQQTGIT---IILLGLPPADGEDVRITGL 203
>gnl|CDD|233170 TIGR00886, 2A0108, nitrite extrusion protein (nitrite facilitator).
[Transport and binding proteins, Anions].
Length = 366
Score = 33.5 bits (77), Expect = 0.079
Identities = 25/107 (23%), Positives = 47/107 (43%), Gaps = 11/107 (10%)
Query: 103 GSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAF-GRTYGVLFLARSLQGI 161
+ A ++++ LV R +L + +++ + L ++Y VL L R GI
Sbjct: 48 LAGAVLRIILGFLVDKFGPRYTTTLSL----LLLAIPCLWAGLAVQSYSVLLLLRLFIGI 103
Query: 162 GSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGV----LIGPP 204
S S M ++ +P + +G A+G+A G +G + PP
Sbjct: 104 AG-GSFASCMPWISFFFPK-KIQGTALGLAAGWGNMGGGVAQFVMPP 148
>gnl|CDD|234525 TIGR04259, oxa_formateAnti, oxalate/formate antiporter. This model
represents a subgroup of the more broadly defined model
TIGR00890, which in turn belongs to the Major
Facilitator transporter family. Seed members for this
family include the known oxalate/formate antiporter of
Oxalobacter formigenes, as well as transporter subunits
co-clustered with the two genes of a system that
decarboxylates oxalate into formate. In many of these
cassettes, two subunits are found rather than one,
suggesting the antiporter is sometimes homodimeric,
sometimes heterodimeric.
Length = 405
Score = 33.6 bits (77), Expect = 0.097
Identities = 27/124 (21%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Query: 97 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 156
A+ V F + P+ G + G + + G ++ L ++ A+ + L+ A
Sbjct: 39 AIQVAFTLFVVTETWLVPIEGWFVDKYGPRIVVMFGGIMCGLGWVLNAYADSLPALYAAA 98
Query: 157 SLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKT 216
+ GIG+ + +G + +PD +RG A G+ G G + M + G
Sbjct: 99 VVAGIGAGAVYGTCVGNALKWFPD--KRGLAAGLTAAGFGAGAALTVVPIAAMIKVSGYQ 156
Query: 217 APFL 220
A F+
Sbjct: 157 AAFM 160
>gnl|CDD|183255 PRK11646, PRK11646, multidrug resistance protein MdtH; Provisional.
Length = 400
Score = 31.6 bits (72), Expect = 0.37
Identities = 46/156 (29%), Positives = 61/156 (39%), Gaps = 12/156 (7%)
Query: 74 MLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQL-LANPLVGILTHRVGYSLPMFTG 132
ML V D+A G AV M+ +A + L L P+ R + G
Sbjct: 230 MLPIMVNDIA---------GSPSAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHRLMAG 280
Query: 133 FVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIAL 192
+IM LS LF L IGS + L+ D R RG+ MG +
Sbjct: 281 LLIMSLSMFPIGMVSNLQQLFTLICLFYIGSIIAE-PARETLSASLADARARGSYMGFSR 339
Query: 193 GGLALGVLIGPPFGGIMYQFVGKTAPFLILSALALG 228
GLALG IG GG ++ +GK L + LG
Sbjct: 340 LGLALGGAIGYIGGGWLFD-LGKALNQPELPWMMLG 374
>gnl|CDD|217407 pfam03176, MMPL, MMPL family. Members of this family are putative
integral membrane proteins from bacteria. Several of the
members are mycobacterial proteins. Many of the proteins
contain two copies of this aligned region. The function
of these proteins is not known, although it has been
suggested that they may be involved in lipid transport.
Length = 332
Score = 31.1 bits (71), Expect = 0.44
Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 19/103 (18%)
Query: 54 SRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLAN 113
R+ + V + + ++ +L+ A + + A
Sbjct: 141 DRDLGLIEAVTLVVIFII--LLIVY--------------RSVVAALLPLLTVGLSLGAAQ 184
Query: 114 PLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 156
LV IL H +G L + F + L L+ A G Y + ++R
Sbjct: 185 GLVAILAHILGIGL---STFALNLLVVLLIAVGTDYALFLVSR 224
>gnl|CDD|233167 TIGR00881, 2A0104, phosphoglycerate transporter family protein.
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 379
Score = 31.2 bits (71), Expect = 0.45
Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 2/115 (1%)
Query: 115 LVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGML 174
++G ++ R + + G ++ + L F F + V+ +L GI +
Sbjct: 49 VMGSVSDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTV 108
Query: 175 AERYPDDRERGNAMGIALGGLALGVLIGPP-FGGIMYQFVGKTAPFLILSALALG 228
+ + ERG + +G + PP + + F++ +A+
Sbjct: 109 TKWFS-RSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAII 162
>gnl|CDD|129977 TIGR00899, 2A0120, sugar efflux transporter. This family of
proteins is an efflux system for lactose, glucose,
aromatic glucosides and galactosides, cellobiose,
maltose, a-methyl glucoside and other sugar compounds.
They are found in both gram-negative and gram-postitive
bacteria [Transport and binding proteins, Carbohydrates,
organic alcohols, and acids].
Length = 375
Score = 31.3 bits (71), Expect = 0.45
Identities = 31/132 (23%), Positives = 55/132 (41%), Gaps = 8/132 (6%)
Query: 97 AVGVMFGSKAFVQLLANPLVGILTHRVG--YSLPMFTGFVIMFLSTLIFAFGRTYGVL-F 153
+G+ + A V + + L+ + G L +F ++ L+ L+FA+ R Y +L
Sbjct: 34 MIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFC-CLLAALACLLFAWNRNYFLLLV 92
Query: 154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAM--GIALGGLALGVLIGPPFGGIMYQ 211
L L S+ + + LA + D R M + ++L +IGPP +
Sbjct: 93 LGVLLSSFAST--ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLAL 150
Query: 212 FVGKTAPFLILS 223
G T FL +
Sbjct: 151 GFGFTVMFLTAA 162
Score = 29.4 bits (66), Expect = 1.9
Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 2/138 (1%)
Query: 91 LMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYG 150
L K G+M G+ A +++ L G L R G M + A +
Sbjct: 230 LGLPDKLAGLMMGTAAGLEIPFMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAADNSLW 289
Query: 151 VLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMY 210
L + + L I ++G+GML + G A + +G +I GGI+
Sbjct: 290 ALLMLQLLNAI--FIGILAGIGMLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILA 347
Query: 211 QFVGKTAPFLILSALALG 228
+ A + + +
Sbjct: 348 ERWSYHAVYWFAIVMLIV 365
>gnl|CDD|181969 PRK09584, tppB, putative tripeptide transporter permease; Reviewed.
Length = 500
Score = 30.9 bits (70), Expect = 0.60
Identities = 27/96 (28%), Positives = 42/96 (43%), Gaps = 14/96 (14%)
Query: 107 FVQLLANPLVGILTHRVGYSLPMFTGFVI-MFLSTLIF-------AFGRTYGV-----LF 153
F ++ +P++ + +++G LPM F I M L + F F G+ L
Sbjct: 327 FWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFANDAGIVSVNWLI 386
Query: 154 LARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMG 189
+ LQ IG S G+ M+A+ P R G MG
Sbjct: 387 ASYGLQSIGELMISGLGLAMVAQLVP-QRLMGFIMG 421
>gnl|CDD|237569 PRK13952, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 142
Score = 29.9 bits (68), Expect = 0.68
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 12/41 (29%)
Query: 171 MGMLAERYPDDRE---RGNAMGIALGGLALGVLIGPPFGGI 208
M ML E +E +GN M LA+GV+IG FG I
Sbjct: 1 MSMLKEF----KEFALKGNVMD-----LAVGVIIGGAFGKI 32
>gnl|CDD|225538 COG2991, COG2991, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 77
Score = 28.6 bits (64), Expect = 0.74
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 131 TGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGM 173
T F++ F L+ G + G +F +S++G SC ++ +G+
Sbjct: 2 TTFLLTFGIFLLVIAGMSIGYIFKRKSIKG---SCGGIAALGI 41
>gnl|CDD|223100 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 30.6 bits (70), Expect = 0.75
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 187 AMGIALGGLAL-GVLIGPPFGGIMYQFVGKTAPFLILSAL 225
AM + G+AL G I P+GG F P + L+AL
Sbjct: 413 AMAAIMNGIALHGGFI--PYGGTFLVFSDYARPAVRLAAL 450
>gnl|CDD|182234 PRK10091, PRK10091, MFS transport protein AraJ; Provisional.
Length = 382
Score = 30.4 bits (69), Expect = 0.78
Identities = 26/129 (20%), Positives = 53/129 (41%), Gaps = 7/129 (5%)
Query: 97 AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGF--VIMFLSTLIFAFGRTYGVLFL 154
A G M A ++ P++ + + R YSL F + + +F +Y +L +
Sbjct: 39 AAGHMISYYALGVVVGAPIIALFSSR--YSLKHILLFLVALCVIGNAMFTLSSSYLMLAI 96
Query: 155 ARSLQGIGSSCSSVSGMG-MLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFV 213
R + G + G+G ++ + + A+ + G+ + L+G P G + Q
Sbjct: 97 GRLVSGFPH--GAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEF 154
Query: 214 GKTAPFLIL 222
FL++
Sbjct: 155 SWRYTFLLI 163
>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 505
Score = 30.0 bits (68), Expect = 1.3
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 9/79 (11%)
Query: 98 VGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARS 157
VGV+ GS + G L+ R G + ++ +S ++ AF Y V + R
Sbjct: 138 VGVLLGS---------FVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRL 188
Query: 158 LQGIGSSCSSVSGMGMLAE 176
L G+G V + + E
Sbjct: 189 LVGMGIGGIWVQAVVLNTE 207
>gnl|CDD|110319 pfam01306, LacY_symp, LacY proton/sugar symporter. This family is
closely related to the sugar transporter family.
Length = 413
Score = 29.7 bits (67), Expect = 1.5
Identities = 15/65 (23%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
Query: 99 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMF---TGFVIMFLSTLIFAFGRTYGVLFLA 155
G++F + +L PL G+++ ++G + TG +++F I+ FG L
Sbjct: 46 GIVFSCISLFSILFQPLFGLISDKLGLRKHLLWCITGLLVLFAPFFIYVFGPLLQSNILV 105
Query: 156 RSLQG 160
++ G
Sbjct: 106 GAIVG 110
>gnl|CDD|237958 PRK15403, PRK15403, multidrug efflux system protein MdtM;
Provisional.
Length = 413
Score = 29.8 bits (67), Expect = 1.6
Identities = 27/113 (23%), Positives = 47/113 (41%), Gaps = 1/113 (0%)
Query: 115 LVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGML 174
L+G L+ R+G + TG +I L+ F + +AR +QG + G +
Sbjct: 70 LLGPLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTV 129
Query: 175 AERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALAL 227
E + + M I + + +IGP G + FV F I++ + L
Sbjct: 130 QEAF-GQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGL 181
>gnl|CDD|211613 TIGR00882, 2A0105, oligosaccharide:H+ symporter. [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 396
Score = 29.7 bits (67), Expect = 1.7
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 11/120 (9%)
Query: 99 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMF---TGFVIMFLSTLIFAFGRTYGVLFLA 155
G++F + +L PL G+++ ++G + +G +++F I+ FG L
Sbjct: 41 GIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILV 100
Query: 156 RSLQG---IGSSCSSVSGMGMLAERYPDDRERGNAM--GIALGGLALGVLIGPPFGGIMY 210
++ G +G S+ +G E Y + R + G A +G + GI++
Sbjct: 101 GAIVGGLYLGFVFSAGAG---AIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILF 157
>gnl|CDD|181371 PRK08306, PRK08306, dipicolinate synthase subunit A; Reviewed.
Length = 296
Score = 29.4 bits (67), Expect = 1.8
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 9/49 (18%)
Query: 141 LIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMG 189
L+ FGRT G+ LAR+L+ +G++ + + R R MG
Sbjct: 156 LVLGFGRT-GMT-LARTLKALGANVTVGA-------RKSAHLARITEMG 195
>gnl|CDD|235151 PRK03699, PRK03699, putative transporter; Provisional.
Length = 394
Score = 29.5 bits (67), Expect = 1.8
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 115 LVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGM 173
L L + + GF +M L+ F + + +A + G+ VSG+ M
Sbjct: 61 LNAWLMEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGV------VSGITM 113
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD. These
permeases have been shown to translocate sodium,
arsenate, antimonite, sulfate and organic anions across
biological membranes in all three kingdoms of life. A
typical anion permease contains 8-13 transmembrane
helices and can function either independently as a
chemiosmotic transporter or as a channel-forming subunit
of an ATP-driven anion pump.
Length = 396
Score = 29.5 bits (67), Expect = 1.8
Identities = 32/183 (17%), Positives = 58/183 (31%), Gaps = 29/183 (15%)
Query: 40 SGSGQHVAHHCRKKSRESRRLVLVIVAI-----ALVLDN----MLLTTVEDVARE----N 86
+G +A + S+ SRRL+L+++ + A ++ +L V + R+
Sbjct: 58 TGLFDRLAAKLARASKGSRRLLLLLMLLTAALSAFFSNDATAVLLTPIVLALLRKLGLSP 117
Query: 87 RHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGF-----VIMFLSTL 141
L+ A G A + NP I+ G F F + + L L
Sbjct: 118 PVPLLLAL--AFAANIGGAAT--PIGNPPNLIIASLSGLGFLDFLAFMAPPALGLLLLLL 173
Query: 142 IFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLI 201
+ L L + L R + A+ + L + L +
Sbjct: 174 GLLYLLFRKKLLLPDEDKLTV-------LAEPLPARPLLKKFLLLALLLLLLFVLLFFFL 226
Query: 202 GPP 204
P
Sbjct: 227 IPL 229
>gnl|CDD|129913 TIGR00833, actII, Transport protein. The
Resistance-Nodulation-Cell Division (RND) Superfamily-
MmpL sub family (TC 2.A.6.5)Characterized members of the
RND superfamily all probably catalyze substrate efflux
via an H+ antiport mechanism. These proteins are found
ubiquitously in bacteria, archaea and eukaryotes. This
sub-family includes the S. coelicolor ActII3 protein,
which may play a role in drug resistance, and the M.
tuberculosis MmpL7 protein, which catalyzes export of an
outer membrane lipid, phthiocerol dimycocerosate
[Transport and binding proteins, Unknown substrate].
Length = 910
Score = 29.2 bits (65), Expect = 2.5
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 111 LANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 156
+A +V +L + T + L+ L+ G Y V R
Sbjct: 213 VAQGIVSLLGIPGLIGVNAQT---TVLLTALVIGAGTDYAVFLTGR 255
>gnl|CDD|129974 TIGR00896, CynX, cyanate transporter. This family of proteins is
involved in active transport of cyanate. The cyanate
transporter in E.Coli is used to transport cyanate into
the cell so it can be metabolized into ammonia and
bicarbonate. This process is used to overcome the
toxicity of environmental cyanate [Transport and binding
proteins, Other].
Length = 355
Score = 28.6 bits (64), Expect = 3.1
Identities = 47/175 (26%), Positives = 71/175 (40%), Gaps = 13/175 (7%)
Query: 60 LVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGIL 119
L+L IV IAL L LT+V + + R M + A G++ + PL L
Sbjct: 1 LILGIVLIALNL-RPALTSVGPLLPQIRSALGMSFSVA-GLLTALPVLCFAVLAPLAPWL 58
Query: 120 THRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYP 179
R G + G +++ LI + T LF +L G+G + +V ++ +P
Sbjct: 59 ARRFGEERSVAAGLLLIAAGILIRSAPGTAL-LFAGTALIGVGIAIINVLLPSLIKRDFP 117
Query: 180 DDRERGNAMGI---AL-GGLALGVLIGPP----FGGIMYQFVGKTAPFLILSALA 226
G G+ AL GG AL P GG Q + A +L+ LA
Sbjct: 118 Q--RVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALLALLA 170
>gnl|CDD|234795 PRK00567, mscL, large-conductance mechanosensitive channel;
Reviewed.
Length = 134
Score = 27.5 bits (62), Expect = 3.4
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 184 RGNAMGIALGGLALGVLIGPPFGGIMYQFVGK 215
RGN + LA+GV+IG FG I+ V
Sbjct: 11 RGNVVD-----LAVGVIIGAAFGKIVSSLVDD 37
>gnl|CDD|224881 COG1970, MscL, Large-conductance mechanosensitive channel [Cell
envelope biogenesis, outer membrane].
Length = 130
Score = 27.6 bits (62), Expect = 3.6
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 12/46 (26%)
Query: 171 MGMLAERYPDDRE---RGNAMGIALGGLALGVLIGPPFGGIMYQFV 213
M ML E +E RGN + LA+GV+IG FG I+ V
Sbjct: 1 MSMLKEF----KEFALRGNVVD-----LAVGVIIGAAFGKIVTSLV 37
>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class.
This model describes a subclass of aspartate kinases.
These are mostly Lys-sensitive and not fused to
homoserine dehydrogenase, unlike some Thr-sensitive and
Met-sensitive forms. Homoserine dehydrogenase is part of
Thr and Met but not Lys biosynthetic pathways. Aspartate
kinase catalyzes a first step in the biosynthesis from
Asp of Lys (and its precursor diaminopimelate), Met, and
Thr. In E. coli, a distinct isozyme is inhibited by each
of the three amino acid products. The Met-sensitive (I)
and Thr-sensitive (II) forms are bifunctional enzymes
fused to homoserine dehydrogenases and form
homotetramers, while the Lys-sensitive form (III) is a
monofunctional homodimer. The Lys-sensitive enzyme of
Bacillus subtilis resembles the E. coli form but is an
alpha 2/beta 2 heterotetramer, where the beta subunit is
translated from an in-phase alternative initiator at
Met-246. The protein slr0657 from Synechocystis PCC6803
is extended by a duplication of the C-terminal region
corresponding to the beta chain. Incorporation of a
second copy of the C-terminal domain may be quite common
in this subgroup of aspartokinases [Amino acid
biosynthesis, Aspartate family].
Length = 401
Score = 28.1 bits (63), Expect = 4.3
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 37 GHSSGSG---QHVAHHCRKKSRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMG 93
G S GSG ++ A K+ +E ++V+V+ A++ V D L+ E R+
Sbjct: 9 GTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTD-ALVEISEKAIRDAITPRERD 67
Query: 94 ETKAVGVMFGSKAFVQLL 111
E + G S F L
Sbjct: 68 ELVSHGERLSSALFSGAL 85
>gnl|CDD|233189 TIGR00924, yjdL_sub1_fam, amino acid/peptide transporter
(Peptide:H+ symporter), bacterial. The model describes
proton-dependent oligopeptide transporters in bacteria.
This model is restricted in its range in recognizing
bacterial proton-dependent oligopeptide transporters,
although they are found in yeast, plants and animals.
They function by proton symport in a 1:1 stoichiometry,
which is variable in different species. All of them are
predicted to contain 12 transmembrane domains, for which
limited experimental evidence exists [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 475
Score = 28.3 bits (63), Expect = 4.5
Identities = 23/130 (17%), Positives = 43/130 (33%), Gaps = 2/130 (1%)
Query: 92 MGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGV 151
+ +A + A V LL + G M G +++ L + A +
Sbjct: 45 FSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDL 104
Query: 152 LFLARSLQGIGSSCSSVSGMGMLAERY--PDDRERGNAMGIALGGLALGVLIGPPFGGIM 209
+F +GS + M+ + Y D R + + +G I P G++
Sbjct: 105 IFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVI 164
Query: 210 YQFVGKTAPF 219
+ G F
Sbjct: 165 AENYGYHVGF 174
>gnl|CDD|223809 COG0738, FucP, Fucose permease [Carbohydrate transport and
metabolism].
Length = 422
Score = 28.0 bits (63), Expect = 5.0
Identities = 19/99 (19%), Positives = 39/99 (39%), Gaps = 14/99 (14%)
Query: 117 GILTHRVGYSLPMFTGFVIMFLSTLIF---AFGRTYGVLFLARSLQGIGSSCSSVSG--- 170
G+L ++GY + G ++ + +F A ++YG +A + G +
Sbjct: 69 GLLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPY 128
Query: 171 MGMLAERYPDDRERGNA--MGIALGGLALGVLIGPPFGG 207
+ +L + A + +A LG ++GP G
Sbjct: 129 VTLLGK------PESAAFRLNLAQAFNGLGAILGPLLGS 161
>gnl|CDD|131765 TIGR02718, sider_RhtX_FptX, siderophore transporter, RhtX/FptX
family. RhtX from Sinorhizobium meliloti 2011 and FptX
from Pseudomonas aeruginosa appear to be single
polypeptide transporters, from the major facilitator
family (see pfam07690) for import of siderophores as a
means to import iron. This function was suggested by
proximity to siderophore biosynthesis genes and then
confirmed by study of knockout and heterologous
expression phenotypes [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 390
Score = 27.9 bits (62), Expect = 5.1
Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 4/111 (3%)
Query: 119 LTHRVGYSLPMFTGFVIMFLSTLIFAFGR-TYGVLFLARSLQGIGSSCSSVSGMGMLAER 177
L R + LPM S + G + + S+ ++ GM AE
Sbjct: 66 LGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAEH 125
Query: 178 YPDDR-ERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALAL 227
+ +GNA + + G+ +G G +++ G+ FL+++ + L
Sbjct: 126 FNGRTLAKGNA--VQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPL 174
>gnl|CDD|112889 pfam04093, MreD, rod shape-determining protein MreD. MreD (murein
formation D) is involved in the rod shape determination
in E. coli, and more generally in cell shape
determination of bacteria whether or not they are
rod-shaped.
Length = 160
Score = 27.2 bits (61), Expect = 5.1
Identities = 12/74 (16%), Positives = 25/74 (33%), Gaps = 5/74 (6%)
Query: 85 ENRHKYLMGETKAVGVM----FGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLST 140
+ + +G++ +GS V L L+G L + L F+ +
Sbjct: 47 ALPGRVGIITAFVLGLLYDVYYGSLLGVYALGFSLIGYLVAKNFKVLRNNRRFLPAWQQV 106
Query: 141 LIFAFGRTYGVLFL 154
L+ + + L
Sbjct: 107 LLLELF-VFVIAGL 119
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 28.3 bits (63), Expect = 5.3
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 73 NMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLL 111
N+ ED ENR++ +G+T+ + F + +Q+
Sbjct: 714 NLRNIFAEDSENENRYEEYLGDTRVIRAFFFAPCLIQIT 752
>gnl|CDD|233175 TIGR00895, 2A0115, benzoate transport. [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 398
Score = 28.1 bits (63), Expect = 5.3
Identities = 27/111 (24%), Positives = 46/111 (41%), Gaps = 10/111 (9%)
Query: 99 GVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSL 158
G+ FG+ F G L R+G + ++ + TL+ A L + R L
Sbjct: 64 GMAFGALFF---------GPLADRIGRRRVLLWSILLFSVFTLLCALATNVTQLLILRFL 114
Query: 159 QGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIM 209
G+G + +++E Y R RG A+G+ G +G +G G +
Sbjct: 115 AGLGLGGLMPNLNALVSE-YAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWL 164
Score = 27.7 bits (62), Expect = 6.5
Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 10/112 (8%)
Query: 98 VGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARS 157
G + GS ++ L L RV L + +F + +L L +
Sbjct: 296 FGGVIGS-----IIFGWLADRLGPRVTALLLLLGA---VFAVLVGSTLFSPTLLLLLG-A 346
Query: 158 LQGIGSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIM 209
+ G + ++A YP R +G A+G LG +IGP G +
Sbjct: 347 IAGFFVNGGQSGLYALMALFYPT-AIRATGVGWAIGIGRLGAIIGPILAGYL 397
>gnl|CDD|221791 pfam12822, DUF3816, Protein of unknown function (DUF3816). This
family of proteins is functionally uncharacterized but
are likely to be membrane transporters. This family of
proteins is found in bacteria and archaea. Proteins in
this family are typically between 177 and 208 amino
acids in length. A subset of this family is associated
with the TM1506 proteins. In this context, transport
through the channel is predicted to be regulated by the
TM1506 protein by either regulating redox potential or
modification of substrates.
Length = 168
Score = 27.2 bits (61), Expect = 5.9
Identities = 16/97 (16%), Positives = 32/97 (32%), Gaps = 4/97 (4%)
Query: 129 MFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRERGNAM 188
G + LS L+F G V LA G++ ++ ++ +
Sbjct: 46 ALIGLLTSLLSFLLFGGGPFALVGPLA----NFLPRILFGLIAGLIYKKLRKKTKKRAVL 101
Query: 189 GIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSAL 225
I LG + ++ G++ K I + +
Sbjct: 102 AIILGTILGTLVATLLNLGLILPLYAKFLGMPISAIV 138
>gnl|CDD|233128 TIGR00792, gph, sugar (Glycoside-Pentoside-Hexuronide) transporter.
The Glycoside-Pentoside-Hexuronide (GPH):Cation
Symporter Family (TC 2.A.2) GPH:cation symporters
catalyze uptake of sugars in symport with a monovalent
cation (H+ or Na+). Members of this family includes
transporters for melibiose, lactose, raffinose,
glucuronides, pentosides and isoprimeverose. Mutants of
two groups of these symporters (the melibiose permeases
of enteric bacteria, and the lactose permease of
Streptococcus thermophilus) have been isolated in which
altered cation specificity is observed or in which sugar
transport is uncoupled from cation symport (i.e.,
uniport is catalyzed). The various members of the family
can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+
as the symported cation. All of these proteins possess
twelve putative transmembrane a-helical spanners
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids].
Length = 437
Score = 28.0 bits (63), Expect = 6.0
Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 1/77 (1%)
Query: 89 KYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRT 148
Y++G+ + M L+ L L + G + G ++M L LIF F +
Sbjct: 250 TYVLGDPELFSYMGSIAIGAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFAGS 309
Query: 149 YGVLFLA-RSLQGIGSS 164
L L L G G +
Sbjct: 310 NLPLILVLIILAGFGQN 326
>gnl|CDD|224216 COG1297, COG1297, Predicted membrane protein [Function unknown].
Length = 624
Score = 27.7 bits (62), Expect = 6.5
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 24/123 (19%)
Query: 107 FVQLLANPLVGILTHRVGYS--LPMFTGFVIMFLSTLIFAFGRTYGVLFLARS--LQG-I 161
+ L +L H + + V++ + + G L A + G +
Sbjct: 321 VLLATVVALGLLLAHFLRGTPLSSCRWLLVVVMVLIAVVI-----GFLVAAVCGYMAGLV 375
Query: 162 GSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLI 221
GSS S +SG+G+L+ ++L L LG G +M +F +
Sbjct: 376 GSSSSPISGIGILSV-----------TLLSLLILILGQSGGLFIDPLMRKF---LVAATL 421
Query: 222 LSA 224
+A
Sbjct: 422 FTA 424
>gnl|CDD|222927 PHA02774, PHA02774, E1; Provisional.
Length = 613
Score = 27.9 bits (63), Expect = 6.6
Identities = 9/18 (50%), Positives = 14/18 (77%)
Query: 74 MLLTTVEDVARENRHKYL 91
+L+T+ DV E+R+KYL
Sbjct: 526 LLITSNIDVKAEDRYKYL 543
>gnl|CDD|225121 COG2211, MelB, Na+/melibiose symporter and related transporters
[Carbohydrate transport and metabolism].
Length = 467
Score = 27.6 bits (62), Expect = 6.9
Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 31/132 (23%)
Query: 97 AVGVMFGSKAFVQLLANPLVGILTHR------------VGYSLPMFTGFVIMFLST---- 140
G +F + + +P++G + R + ++P V++F++
Sbjct: 49 LAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFITPDFSM 108
Query: 141 ---LIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPDDRER----GNAMGIALG 193
LI+A TY +L L +L I + + E D +ER M A
Sbjct: 109 TGKLIYALV-TYMLLGLGYTLVNI-PYGA------LGPEITQDPQERASLTSWRMVFASL 160
Query: 194 GLALGVLIGPPF 205
G L ++ PP
Sbjct: 161 GGLLVAVLFPPL 172
>gnl|CDD|187586 cd05325, carb_red_sniffer_like_SDR_c, carbonyl reductase
sniffer-like, classical (c) SDRs. Sniffer is an
NADPH-dependent carbonyl reductase of the classical SDR
family. Studies in Drosophila melanogaster implicate
Sniffer in the prevention of neurodegeneration due to
aging and oxidative-stress. This subgroup also includes
Rhodococcus sp. AD45 IsoH, which is an NAD-dependent
1-hydroxy-2-glutathionyl-2-methyl-3-butene dehydrogenase
involved in isoprene metabolism, Aspergillus nidulans
StcE encoded by a gene which is part of a proposed
sterigmatocystin biosynthesis gene cluster, Bacillus
circulans SANK 72073 BtrF encoded by a gene found in the
butirosin biosynthesis gene cluster, and Aspergillus
parasiticus nor-1 involved in the biosynthesis of
aflatoxins. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRs are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes catalyze a wide range of activities including
the metabolism of steroids, cofactors, carbohydrates,
lipids, aromatic compounds, and amino acids, and act in
redox sensing. Classical SDRs have an TGXXX[AG]XG
cofactor binding motif and a YXXXK active site motif,
with the Tyr residue of the active site motif serving as
a critical catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 233
Score = 27.3 bits (61), Expect = 7.7
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 63 VIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAFVQLL---ANPLVGIL 119
V++ A +L + +V E+ + + +G + ++AF+ LL A + +
Sbjct: 78 VLINNAGILHSY--GPASEVDSEDLLEVF--QVNVLGPLLLTQAFLPLLLKGARAKIINI 133
Query: 120 THRVGYSLPMFTGF 133
+ RVG S+ T
Sbjct: 134 SSRVG-SIGDNTSG 146
>gnl|CDD|233083 TIGR00670, asp_carb_tr, aspartate carbamoyltransferase. Aspartate
transcarbamylase (ATCase) is an alternate name.PyrB
encodes the catalytic chain of aspartate
carbamoyltransferase, an enzyme of pyrimidine
biosynthesis, which organizes into trimers. In some
species, including E. coli and the Archaea but excluding
Bacillus subtilis, a regulatory subunit PyrI is also
present in an allosterically regulated hexameric
holoenzyme. Several molecular weight classes of ATCase
are described in MEDLINE:96303527 and often vary within
taxa. PyrB and PyrI are fused in Thermotoga
maritima.Ornithine carbamoyltransferases are in the same
superfamily and form an outgroup [Purines, pyrimidines,
nucleosides, and nucleotides, Pyrimidine ribonucleotide
biosynthesis].
Length = 301
Score = 27.3 bits (61), Expect = 8.1
Identities = 15/35 (42%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 11 RHTREELVVRLVAEMSRVKTSGAGHRGHSSGSGQH 45
RH E RL AE+S V AG GS QH
Sbjct: 102 RH-PLEGAARLAAEVSEVPVINAG-----DGSNQH 130
>gnl|CDD|232880 TIGR00220, mscL, large conductance mechanosensitive channel
protein. Protein encodes a channel which opens in
response to a membrane stretch force. Probably serves as
an osmotic gauge. Carboxy terminus tends to be more
divergent across species with a high degree of sequence
conservation found at the N-terminus [Cellular
processes, Adaptations to atypical conditions].
Length = 127
Score = 26.4 bits (58), Expect = 8.8
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 17/66 (25%)
Query: 97 AVGVMFGS------KAFVQLLANPLVGILTHRVGYSLPMFT-----------GFVIMFLS 139
AVGV+ G + V + PL+G+L + +S FT F+ ++
Sbjct: 18 AVGVVIGGAFGKIVSSLVADIIMPLLGLLLGGIDFSGLSFTLQDAQAVGKYGEFIQNIIN 77
Query: 140 TLIFAF 145
LI AF
Sbjct: 78 FLIIAF 83
>gnl|CDD|179591 PRK03545, PRK03545, putative arabinose transporter; Provisional.
Length = 390
Score = 27.2 bits (61), Expect = 9.1
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 17/103 (16%)
Query: 133 FVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCS-------SVSGMGMLAERY-PDDRER 184
FV+ S ++ A + VL ++R IG + + + S LA R P + +
Sbjct: 81 FVLFIASHVLSALAWNFTVLLISR----IGIAFAHAIFWSITAS----LAIRVAPAGK-K 131
Query: 185 GNAMGIALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALAL 227
A+ + G AL +++G P G ++ Q++G FL + AL
Sbjct: 132 AQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGAL 174
>gnl|CDD|237810 PRK14764, PRK14764, lipoprotein signal peptidase; Provisional.
Length = 209
Score = 26.9 bits (60), Expect = 9.5
Identities = 31/139 (22%), Positives = 50/139 (35%), Gaps = 25/139 (17%)
Query: 20 RLVAEMSRVKTSGAGHRGHSSGSGQHVAHHCRKKSRESRRLVLVIVAIALVLDNMLLTTV 79
+ E + T G G R R RL+L + A+ L LD ++T V
Sbjct: 4 GMPDEPTGSATPVTGAEEAGGAGGAAAP---RPPGRRRLRLLLSVAAVVLALD--IVTKV 58
Query: 80 EDVARENRHKYLMGETKAVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLS 139
VA + V+++ + + L G + M TG+ +
Sbjct: 59 LAVALLEPGQP-----------------VEIIGDTVTLTLVRNSGAAFSMATGYTWVL-- 99
Query: 140 TLIFAFGRTYGVLFLARSL 158
TLI A G G+ ++ R L
Sbjct: 100 TLI-ATGVVVGIFWMGRRL 117
>gnl|CDD|236810 PRK10965, PRK10965, multicopper oxidase; Provisional.
Length = 523
Score = 27.3 bits (61), Expect = 9.6
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 170 GMGMLAERYPDDRERGNAMGIALGGLALG 198
GM ML E+Y D G M +G + G
Sbjct: 364 GMQMLMEKYGDQAMAGMDMDHMMGHMGHG 392
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.139 0.413
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,138,247
Number of extensions: 1303904
Number of successful extensions: 2325
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2277
Number of HSP's successfully gapped: 168
Length of query: 256
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 161
Effective length of database: 6,723,972
Effective search space: 1082559492
Effective search space used: 1082559492
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.0 bits)