RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11010
         (256 letters)



>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId:
           562]}
          Length = 417

 Score = 54.4 bits (129), Expect = 4e-09
 Identities = 23/182 (12%), Positives = 57/182 (31%), Gaps = 2/182 (1%)

Query: 48  HHCRKKSRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKAF 107
               +  R+ +   L +  I +     +          +        T+  G +      
Sbjct: 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGEL 270

Query: 108 VQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSS 167
           +         ++ +R+G    +     IM +  +  +F  +   + + ++L         
Sbjct: 271 LNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLL 330

Query: 168 VSGMGMLAERYPDDRERGNAMGIALG-GLALGVLIGPPFGGIMYQFVGKTAPFLILSALA 226
           V     +  ++   R       +       L ++      G MY+ +G    +L+L  +A
Sbjct: 331 VGCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVA 389

Query: 227 LG 228
           LG
Sbjct: 390 LG 391



 Score = 41.7 bits (96), Expect = 5e-05
 Identities = 24/136 (17%), Positives = 44/136 (32%), Gaps = 5/136 (3%)

Query: 97  AVGVMFGSKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLAR 156
             G++F + +   LL  PL G+L+ ++G    +      M +    F       +L    
Sbjct: 44  DTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNI 103

Query: 157 SLQGI-----GSSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQ 211
            +  I        C +     + A      R      G A     +G  +G    GIM+ 
Sbjct: 104 LVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMFT 163

Query: 212 FVGKTAPFLILSALAL 227
              +   +L      +
Sbjct: 164 INNQFVFWLGSGCALI 179



 Score = 27.0 bits (58), Expect = 2.4
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 2/64 (3%)

Query: 96  KAVGVMFG-SKAFVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIFAFG-RTYGVLF 153
               V F   K    +  + L G +   +G+        ++    TLI  F     G L 
Sbjct: 348 TIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407

Query: 154 LARS 157
           L R 
Sbjct: 408 LLRR 411


>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia
           coli [TaxId: 562]}
          Length = 447

 Score = 41.6 bits (96), Expect = 6e-05
 Identities = 18/170 (10%), Positives = 46/170 (27%), Gaps = 7/170 (4%)

Query: 47  AHHCRKKSRESRRLVLVIVAIALVLDNMLLTTVEDVARENRHKYLMGETKAVGVMFGSKA 106
           A       R  R  + + +        ++      +A     +        +G      +
Sbjct: 12  AAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNF-ALAMPYLVEQGFSRG-DLGFALSGIS 69

Query: 107 FVQLLANPLVGILTHRVGYSLPMFTGFVIMFLSTLIF----AFGRTYGVLFLARSLQGIG 162
                +  ++G ++ R    + +  G ++     L          +  V+F+   L G  
Sbjct: 70  IAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWF 129

Query: 163 SSCSSVSGMGMLAERYPDDRERGNAMGIALGGLALGVLIGPPFGGIMYQF 212
                      +   +     RG  + +      +G  I P    +   +
Sbjct: 130 QGMGWPPCGRTMVHWWSQKE-RGGIVSVWNCAHNVGGGIPPLLFLLGMAW 178



 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 17/108 (15%), Positives = 29/108 (26%), Gaps = 2/108 (1%)

Query: 121 HRVGYSLPMFTGFVIMFLSTLIFAFGRTYGVLFLARSLQGIGSSCSSVSGMGMLAERYPD 180
              G +   F   V +              V  +   + G       +       E  P 
Sbjct: 315 GNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPK 374

Query: 181 DRERGNAMGIA-LGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALAL 227
            +  G A G   L G   G +      G    F G    F+++   ++
Sbjct: 375 -KAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSI 421


>d2j01p1 c.12.1.1 (P:5-150) Ribosomal protein L15 (L15p) {Thermus
          thermophilus [TaxId: 274]}
          Length = 146

 Score = 26.9 bits (59), Expect = 1.6
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 29 KTSGAGHRGHSSGSGQHVAH 48
          KT+  GH+G  S SG     
Sbjct: 25 KTATRGHKGQKSRSGGLKDP 44


>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 109

 Score = 24.8 bits (54), Expect = 5.8
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 5/31 (16%)

Query: 184 RGNAMGIALGGLALGVLIGPPFGGIMYQFVG 214
           RGN +      LA+ V+IG  F  ++ +F  
Sbjct: 2   RGNIVD-----LAVAVVIGTAFTALVTKFTD 27


>d1iv8a2 c.1.8.1 (A:1-653) Maltooligosyl trehalose synthase
           {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}
          Length = 653

 Score = 25.3 bits (55), Expect = 8.2
 Identities = 5/36 (13%), Positives = 11/36 (30%)

Query: 191 ALGGLALGVLIGPPFGGIMYQFVGKTAPFLILSALA 226
            +  L         F     +F  K     ++ +L+
Sbjct: 534 RVMELVEETFTNKDFIKSFMKFESKIRRIGMIKSLS 569


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.413 

Gapped
Lambda     K      H
   0.267   0.0567    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 908,565
Number of extensions: 39048
Number of successful extensions: 116
Number of sequences better than 10.0: 1
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 17
Length of query: 256
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 173
Effective length of database: 1,268,006
Effective search space: 219365038
Effective search space used: 219365038
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.2 bits)