Query         psy11011
Match_columns 134
No_of_seqs    104 out of 295
Neff          5.0 
Searched_HMMs 46136
Date          Fri Aug 16 15:55:26 2013
Command       hhsearch -i /work/01045/syshi/Psyhhblits/psy11011.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11011hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF01015 Ribosomal_S3Ae:  Ribos 100.0 1.5E-49 3.3E-54  314.1  10.5  114    1-132    25-138 (194)
  2 PRK04057 30S ribosomal protein 100.0 1.3E-48 2.8E-53  310.9   9.6  114    1-132    19-132 (203)
  3 KOG1628|consensus              100.0 2.9E-49 6.3E-54  319.8   3.1  128    1-132    36-163 (249)
  4 COG1890 RPS1A Ribosomal protei 100.0 9.6E-43 2.1E-47  278.0   8.0  103   14-118    31-135 (214)
  5 PF04083 Abhydro_lipase:  Parti  86.5     1.7 3.7E-05   28.6   4.4   18   90-107    14-31  (63)
  6 COG5216 Uncharacterized conser  43.3      15 0.00033   24.7   1.4   15   27-41     28-42  (67)
  7 PF08348 PAS_6:  YheO-like PAS   34.0      78  0.0017   23.0   4.0   68   27-106    17-87  (118)
  8 PF12638 Staygreen:  Staygreen   33.1 1.6E+02  0.0034   22.9   5.7   21   21-41     18-38  (151)
  9 KOG2624|consensus               29.1      67  0.0015   28.4   3.5   41   79-124    40-80  (403)
 10 PF14598 PAS_11:  PAS domain; P  29.0      93   0.002   21.9   3.7   58   53-111    29-89  (111)
 11 PF01253 SUI1:  Translation ini  20.6      48   0.001   22.4   0.8   48   48-95      5-52  (83)

No 1  
>PF01015 Ribosomal_S3Ae:  Ribosomal S3Ae family;  InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits.  Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=100.00  E-value=1.5e-49  Score=314.12  Aligned_cols=114  Identities=63%  Similarity=0.968  Sum_probs=97.4

Q ss_pred             CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccc
Q psy11011          1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMV   80 (134)
Q Consensus         1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlV   80 (134)
                      +|+.+++|+||+++       +|.++||+||+|||||+||+++  +|+||+|+|++|+|++|+|+|||||||+|||||||
T Consensus        25 ~F~~~~iG~T~~~~-------~~~l~gRv~Evsl~DL~~d~~~--~~~K~~f~i~~V~g~~a~T~F~G~elt~D~lrSlv   95 (194)
T PF01015_consen   25 MFGNRNIGKTPANK-------PEKLKGRVFEVSLADLTNDFSK--AYRKFKFKIEDVQGNNALTNFHGMELTRDKLRSLV   95 (194)
T ss_dssp             TSSSSEECEEEEE--------CCCCCC-EEEEECHCCCSTTTT--SS-EEEEEEEEEETTEEEEEEEEEE--HHHHHHC-
T ss_pred             HhCcceeeEEEcCC-------cccccCeEEEEEHHHhcCchhh--hcEEEEEEEEeecCCEEEEEEcceecchhhhhcce
Confidence            69999999999999       7788999999999999999965  99999999999999999999999999999999999


Q ss_pred             cceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeecceeeeeee
Q psy11011         81 KKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVT  132 (134)
Q Consensus        81 rk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~sqi~~i~~  132 (134)
                      |||+|+||+++||+|+|||+|||||+|||+++         |++||+|+|+.
T Consensus        96 rk~~s~Ie~~~dvkT~DGy~lRvf~i~fT~~r---------a~~sq~~~IRk  138 (194)
T PF01015_consen   96 RKWQSRIEAIVDVKTKDGYLLRVFCIAFTKKR---------AKSSQIKAIRK  138 (194)
T ss_dssp             -TTC-EEEEEEEEEETTTEEEEEEEEEEE-------------TCHHHHHHHH
T ss_pred             eecceEEEEEEEEEcCCCcEEEEEEEEEEeec---------ccchHHHHHHH
Confidence            99999999999999999999999999999998         88888888763


No 2  
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=100.00  E-value=1.3e-48  Score=310.91  Aligned_cols=114  Identities=34%  Similarity=0.465  Sum_probs=106.7

Q ss_pred             CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccc
Q psy11011          1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMV   80 (134)
Q Consensus         1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlV   80 (134)
                      +|+.+++|+||+       .+++.++||++|+||+||+||+++  +|+||+|+|++|+|++|+|+|||||||+|||||||
T Consensus        19 ~F~~~~iG~T~a-------~~~~~l~GRv~EvsL~DL~~d~~~--~~~K~~f~i~~V~G~~a~T~F~G~~lTrD~lrSlV   89 (203)
T PRK04057         19 FFGGVEIGETPA-------DDPEKLIGRVVETTLGDLTGDFSK--QNVKLYFKIDNVEGDKAYTRFIGHELTRDYLRSLV   89 (203)
T ss_pred             ccCCceEEEEEc-------cChhhcCCcEEEEEHHHhcCChhh--ceEEEEEEEEeeeCCEEEEEEeeeEecHHHHHhHh
Confidence            699999999995       577778899999999999999966  89999999999999999999999999999999999


Q ss_pred             cceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeecceeeeeee
Q psy11011         81 KKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVT  132 (134)
Q Consensus        81 rk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~sqi~~i~~  132 (134)
                      |||+|+||+++||+|+|||+|||||+|||+++         |++||+|+|+.
T Consensus        90 rk~~S~Ie~~vdvkTkDGy~lRv~~i~~T~~r---------a~~sq~~~IRk  132 (203)
T PRK04057         90 RRRTSKIDAIVDVTTKDGYKVRVKPVALTTKR---------ARTSQKHAIRK  132 (203)
T ss_pred             ccCceeEEEEEEEEcCCCCEEEEEEEEEEchh---------hhhhHHHHHHH
Confidence            99999999999999999999999999999997         67778877764


No 3  
>KOG1628|consensus
Probab=100.00  E-value=2.9e-49  Score=319.80  Aligned_cols=128  Identities=74%  Similarity=1.035  Sum_probs=124.9

Q ss_pred             CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccc
Q psy11011          1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMV   80 (134)
Q Consensus         1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlV   80 (134)
                      ||+.||+|+||++||+|++.|++. +||+|||+|+||+||   |.+||||+|+++||+|+||+|+||||+||+|++|||+
T Consensus        36 ~~~~~~~~~~l~~~t~g~k~~~~~-~gr~~~v~~~dl~n~---e~afrK~kli~edvqgkN~lt~f~GmdlT~dK~~smv  111 (249)
T KOG1628|consen   36 MFPARNVGKTLVNRTQGTKGASDG-KGRVVEVSLADLQNE---EVAFRKFKLIAEDVQGKNCLTNFHGMDLTRDKLVSMV  111 (249)
T ss_pred             cccCCChhheeccccccccccccC-CCceeeechhhccch---hhhhheeeeeeccccCcccceeccCcchhhhhhhhhh
Confidence            699999999999999999999999 999999999999966   6799999999999999999999999999999999999


Q ss_pred             cceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeecceeeeeee
Q psy11011         81 KKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVT  132 (134)
Q Consensus        81 rk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~sqi~~i~~  132 (134)
                      +||+++|||+++|+|.|||+|||||++||+++++|.+||||||+||+++|++
T Consensus       112 kKwqt~ieA~v~vkT~dgy~Lrlf~i~ftkk~~nqv~ktsyaq~~qv~~irk  163 (249)
T KOG1628|consen  112 KKWQTLIEAVVDVKTTDGYLLRLFCIGFTKKLVNQVKKTSYAQHGQVRQIRK  163 (249)
T ss_pred             hhhhheeeeeEEeecccCceEEeeehHHHHHhhcccCCceeeecchHHHHHH
Confidence            9999999999999999999999999999999999999999999999999875


No 4  
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=100.00  E-value=9.6e-43  Score=277.99  Aligned_cols=103  Identities=42%  Similarity=0.626  Sum_probs=95.8

Q ss_pred             ccccceeCCcCcc--ceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccccceeeeEEEEE
Q psy11011         14 RTQGTKIASEGLK--HRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEANV   91 (134)
Q Consensus        14 rt~G~~~A~d~lk--GRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrk~~s~Ie~~v   91 (134)
                      +..|++||+||.+  ||++|++|+|||||+++  +|+|++|+|++|+|++|+|.|+|||||+||+|||||||+|+||+++
T Consensus        31 ~~vG~t~a~dp~~ligR~vEvtl~DLtgd~~~--~~~K~~FrI~~v~G~~a~T~F~GheltrDyiRslVRR~~SrIdai~  108 (214)
T COG1890          31 VEVGKTPANDPDKLIGRVVEVTLADLTGDFSK--SHRKLKFRIDDVEGDKALTRFKGHELTRDYIRSLVRRRTSRIDAIV  108 (214)
T ss_pred             cccccccccChHHhhCceEEEEHHHhcCCccc--ceEEEEEEEeeccCcEeeEEEeccchhHHHHHHHHhcccceeeeEE
Confidence            4456777888865  99999999999999977  8999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCcEEEEEEEEEeeeccCcccc
Q psy11011         92 DVKTTDGYLLRLFCIGFTHKDQLSQRK  118 (134)
Q Consensus        92 dVkT~DGy~lRvf~i~fT~kr~~~~~k  118 (134)
                      ||+|+|||.||||++|||.+|+++||+
T Consensus       109 dVkTkDGy~~RV~~~~~T~~ra~tSqk  135 (214)
T COG1890         109 DVKTKDGYVLRVKAMAFTRRRAKTSQK  135 (214)
T ss_pred             EEEecCCcEEEEEEEEEEehhcccchH
Confidence            999999999999999999999666654


No 5  
>PF04083 Abhydro_lipase:  Partial alpha/beta-hydrolase lipase region;  InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=86.55  E-value=1.7  Score=28.61  Aligned_cols=18  Identities=44%  Similarity=0.691  Sum_probs=13.9

Q ss_pred             EEEEEeCCCcEEEEEEEE
Q psy11011         90 NVDVKTTDGYLLRLFCIG  107 (134)
Q Consensus        90 ~vdVkT~DGy~lRvf~i~  107 (134)
                      ...|.|.|||.|-++=|-
T Consensus        14 ~h~V~T~DGYiL~l~RIp   31 (63)
T PF04083_consen   14 EHEVTTEDGYILTLHRIP   31 (63)
T ss_dssp             EEEEE-TTSEEEEEEEE-
T ss_pred             EEEEEeCCCcEEEEEEcc
Confidence            357999999999999863


No 6  
>COG5216 Uncharacterized conserved protein [Function unknown]
Probab=43.30  E-value=15  Score=24.71  Aligned_cols=15  Identities=40%  Similarity=0.647  Sum_probs=13.8

Q ss_pred             ceEEEEehhhhcCCh
Q psy11011         27 HRVFEVSLADLQSDQ   41 (134)
Q Consensus        27 GRv~EvsLaDL~~d~   41 (134)
                      |-.||+||.||.+.+
T Consensus        28 GDRFeIsLeDl~~GE   42 (67)
T COG5216          28 GDRFEISLEDLRNGE   42 (67)
T ss_pred             CCEeEEEHHHhhCCc
Confidence            999999999998875


No 7  
>PF08348 PAS_6:  YheO-like PAS domain;  InterPro: IPR013559 This domain is found in various hypothetical bacterial proteins that are similar to the Escherichia coli protein YheO (P64624 from SWISSPROT). Their function is unknown, but a few members are annotated as being HTH-containing proteins and putative DNA-binding proteins. 
Probab=34.01  E-value=78  Score=23.05  Aligned_cols=68  Identities=32%  Similarity=0.318  Sum_probs=41.3

Q ss_pred             ceEEEEehhhhcCChhhhcceeEEEEEEee-ecCceEEeEEeeeeecchhhhcccccee--eeEEEEEEEEeCCCcEEEE
Q psy11011         27 HRVFEVSLADLQSDQDAERSFRKFRLIAED-VQGHNVLTNFHGMDLTTDKLRSMVKKWQ--TLIEANVDVKTTDGYLLRL  103 (134)
Q Consensus        27 GRv~EvsLaDL~~d~~~~~~~~K~kf~i~~-V~G~~a~T~F~GmelT~DklrSlVrk~~--s~Ie~~vdVkT~DGy~lRv  103 (134)
                      |...||-|.||.+.+      ..+-.+.+. |.|+..     |=. .+|..-.+++...  ...-.+..-+|+||..||-
T Consensus        17 G~~~EVVLHDl~~~~------~sIv~I~Ng~vsgR~v-----Gdp-~t~~~l~~l~~~~~~~~~~~nY~~~~~~Gk~lrS   84 (118)
T PF08348_consen   17 GPNCEVVLHDLSDPE------HSIVAIANGHVSGRKV-----GDP-ITDLALELLKEKQYEEDYIINYKTKTKDGKILRS   84 (118)
T ss_pred             CCCeEEEEEECCCCC------CEEEEEECCCccCCcc-----CCc-hhHHHHHHHhccccCCCccccccccCCCCCEEEE
Confidence            899999999996542      345555666 777752     322 3333444444432  3334555667889988885


Q ss_pred             EEE
Q psy11011        104 FCI  106 (134)
Q Consensus       104 f~i  106 (134)
                      -.+
T Consensus        85 sT~   87 (118)
T PF08348_consen   85 STF   87 (118)
T ss_pred             EEE
Confidence            444


No 8  
>PF12638 Staygreen:  Staygreen protein;  InterPro: IPR024438 This domain is found in a family of proteins have been implicated in chlorophyll degradation [, ]. Intriguingly members of this family are also found in non-photosynthetic bacteria.
Probab=33.08  E-value=1.6e+02  Score=22.90  Aligned_cols=21  Identities=10%  Similarity=0.297  Sum_probs=17.5

Q ss_pred             CCcCccceEEEEehhhhcCCh
Q psy11011         21 ASEGLKHRVFEVSLADLQSDQ   41 (134)
Q Consensus        21 A~d~lkGRv~EvsLaDL~~d~   41 (134)
                      ...|..+|.+-++..|.|++.
T Consensus        18 ~~~P~~pR~YTLTHsD~T~~L   38 (151)
T PF12638_consen   18 PTHPIIPRRYTLTHSDFTGEL   38 (151)
T ss_pred             cCCCCCCceEEeecCCccCce
Confidence            455678999999999999873


No 9  
>KOG2624|consensus
Probab=29.14  E-value=67  Score=28.39  Aligned_cols=41  Identities=32%  Similarity=0.501  Sum_probs=27.8

Q ss_pred             cccceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeec
Q psy11011         79 MVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQH  124 (134)
Q Consensus        79 lVrk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~  124 (134)
                      ++.+|---+|. ..|.|.|||.|-+.=|.--.    ..+.-.|.||
T Consensus        40 ~i~~~gy~~E~-h~V~T~DgYiL~lhRIp~~~----~~rp~Vll~H   80 (403)
T KOG2624|consen   40 IIEKYGYPVEE-HEVTTEDGYILTLHRIPRGK----KKRPVVLLQH   80 (403)
T ss_pred             HHHHcCCceEE-EEEEccCCeEEEEeeecCCC----CCCCcEEEee
Confidence            45666666675 46999999999888764443    3345556665


No 10 
>PF14598 PAS_11:  PAS domain; PDB: 1P97_A 3F1O_A 2A24_A 3H7W_A 3F1P_A 3H82_A 3F1N_A 4F3L_B 4DJ3_A 2KDK_A ....
Probab=29.00  E-value=93  Score=21.87  Aligned_cols=58  Identities=17%  Similarity=0.250  Sum_probs=46.4

Q ss_pred             EEeeecCceEEeEEeeeeecc---hhhhccccceeeeEEEEEEEEeCCCcEEEEEEEEEeee
Q psy11011         53 IAEDVQGHNVLTNFHGMDLTT---DKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHK  111 (134)
Q Consensus        53 ~i~~V~G~~a~T~F~GmelT~---DklrSlVrk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~k  111 (134)
                      ..+|+-|..++--+|..|+..   +..+.+..+++. .....-..+++|--+-+..-+.-..
T Consensus        29 ~~~eLvG~s~y~~~H~~D~~~~~~~~~~~~~~~g~~-~~~~yR~~~k~g~~vwvqt~~~~~~   89 (111)
T PF14598_consen   29 LPEELVGRSIYDFVHPDDLQRVLKQHHREVLQKGQS-VSPYYRFRTKNGGYVWVQTKATLFY   89 (111)
T ss_dssp             -HHHHTTSBGGGGBSCCTHHHHHHHHHHHHHHHSSE-EEEEEEEE-TTSSEEEEEEEEEEEE
T ss_pred             CcHHHcCCchHHhCCHhhhhhHHHHHHHHHhhCCCc-CcceEEEEecCCcEEEEEEEEEEEE
Confidence            346778999999999999886   668888999996 7788999999998888887766555


No 11 
>PF01253 SUI1:  Translation initiation factor SUI1;  InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []. SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
Probab=20.58  E-value=48  Score=22.37  Aligned_cols=48  Identities=19%  Similarity=0.298  Sum_probs=37.0

Q ss_pred             eEEEEEEeeecCceEEeEEeeeeecchhhhccccceeeeEEEEEEEEe
Q psy11011         48 RKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKT   95 (134)
Q Consensus        48 ~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlVrk~~s~Ie~~vdVkT   95 (134)
                      .++.+.++.-.|+...|.-.|+++....+..+.+.|..+.-+..-|..
T Consensus         5 ~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~   52 (83)
T PF01253_consen    5 PKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTK   52 (83)
T ss_dssp             TCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE
T ss_pred             CEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEee
Confidence            456677778889999999999999999999999998877766666644


Done!