Query psy11011
Match_columns 134
No_of_seqs 104 out of 295
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 15:55:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11011.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11011hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xzm_4 40S ribosomal protein S 100.0 1.4E-60 4.7E-65 390.2 11.5 130 1-132 39-172 (265)
2 3u5c_B RP10A, 40S ribosomal pr 100.0 3E-61 1E-65 392.9 5.0 130 1-132 37-166 (255)
3 3j20_A 30S ribosomal protein S 100.0 1.7E-52 5.7E-57 331.1 9.4 113 1-131 26-138 (198)
4 3od9_A Putative exported prote 38.6 24 0.00083 25.9 3.1 57 27-83 59-126 (135)
5 3tw8_B RAS-related protein RAB 16.9 39 0.0013 22.6 0.7 50 3-60 16-68 (181)
6 1pzq_A Erythronolide synthase; 15.7 9.1 0.00031 24.0 -2.5 21 66-86 27-47 (60)
7 3c5o_A UPF0311 protein RPA1785 14.9 2.8E+02 0.0095 19.8 5.0 27 83-109 66-92 (157)
8 3rn5_A Interferon-inducible pr 13.7 1.3E+02 0.0044 23.5 2.9 56 65-128 141-196 (208)
9 2pp6_A Gifsy-2 prophage ATP-bi 12.5 3.3E+02 0.011 18.9 4.5 47 6-60 50-99 (102)
10 3g7g_A UPF0311 protein CA_C332 12.3 3.7E+02 0.013 19.2 5.0 29 82-110 68-96 (158)
No 1
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_4
Probab=100.00 E-value=1.4e-60 Score=390.24 Aligned_cols=130 Identities=48% Similarity=0.827 Sum_probs=127.0
Q ss_pred CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCCh-hhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhcc
Q psy11011 1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQ-DAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSM 79 (134)
Q Consensus 1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~-~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSl 79 (134)
||+.+++|+|||+||+|+++|+|.++|||||||||||+||+ ++ +|+||+|+|++|+|++|+|+|||||||+||||||
T Consensus 39 ~F~~r~iGkTlv~rt~gtkia~d~L~GRv~EvsLaDL~~d~~~~--~~rK~kf~i~~V~G~nalT~F~GmdlTrDklrSl 116 (265)
T 2xzm_4 39 PFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDNSNDK--AWRKVKLVIDEVDGRNAKTSFYGLDITRDRLCSM 116 (265)
T ss_dssp TSCSSCCSEEEEECCCSSSCSTTSGGGCEEEEESCSSSSTTTTS--CCCEEEEEEEEECSSCEEEEEEEEECCHHHHHHS
T ss_pred ccCCceeEEEecccccCcccCchhcCCcEEEEEHHHhcCChhhh--cceEEEEEEEeecCCEEEEEEeeeeccHHHhhhh
Confidence 79999999999999999999999999999999999999998 54 8999999999999999999999999999999999
Q ss_pred ccceeeeEEEEEEEEeCCCcEEEEEEEEEeeecc---Ccccceeeeecceeeeeee
Q psy11011 80 VKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQ---LSQRKTCYAQHNQIKIKVT 132 (134)
Q Consensus 80 Vrk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~---~~~~kt~Ya~~sqi~~i~~ 132 (134)
||||+|+|||++||+|+|||+|||||||||++++ +|.+||||||+||+|+|+-
T Consensus 117 VrKw~s~Iea~vdVkT~DGY~lRvf~i~fT~kr~~~~~q~kkt~Ya~~SQir~IRk 172 (265)
T 2xzm_4 117 IRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSSTSTCYAKSSQVRAIRR 172 (265)
T ss_dssp CCTTBCEEEEEEEEEETTTEEEEEEEEEEECCCSSCCSCSSCCBCCTHHHHHHHHH
T ss_pred hcccceeEEEEEEEEeCCCcEEEEEEEEEEecccccccccceeeeccccchHHHHH
Confidence 9999999999999999999999999999999999 9999999999999999863
No 2
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_B
Probab=100.00 E-value=3e-61 Score=392.89 Aligned_cols=130 Identities=59% Similarity=0.898 Sum_probs=127.3
Q ss_pred CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccc
Q psy11011 1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMV 80 (134)
Q Consensus 1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlV 80 (134)
||+.+++|+||++||||+++|+|.++|||||+|||||+||+++ +|+||+|+|++|+|++|+|+|||||||+|||||||
T Consensus 37 ~F~~r~iGkT~v~~t~gtkia~d~L~GRv~EvsLaDL~~D~~~--~~rK~kl~i~~V~G~~~lT~F~GmdlT~DklrSlV 114 (255)
T 3u5c_B 37 TFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSEDH--SFRKIKLRVDEVQGKNLLTNFHGMDFTTDKLRSMV 114 (255)
T ss_dssp SSSCSEEEEEECCCCCSSSCHHHHSCCCEEEEESHHHHSCSTT--SSCEEEEECCCEETTEECCEEEEECCCHHHHHHHC
T ss_pred ccCCcceeEEEcccccCcccCchhccCcEEEEEhhhccCChhh--hceEEEEEEEeecCCEEEEEEcceeechhhhhhhc
Confidence 7999999999999999999999999999999999999999965 89999999999999999999999999999999999
Q ss_pred cceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeecceeeeeee
Q psy11011 81 KKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKVT 132 (134)
Q Consensus 81 rk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~sqi~~i~~ 132 (134)
|||+|+|||++||+|+|||+|||||||||+++++|.+||||||+||+|+|+-
T Consensus 115 rKw~s~Iea~vdVkT~DGy~lRvf~i~fT~kr~~q~~kt~YA~~sQi~~IRk 166 (255)
T 3u5c_B 115 RKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHSYAQSSHIRAIRK 166 (255)
T ss_dssp CTTSCEEECCEEEECSSSCEEEECCEEECCCCTTCCSSCCCCCSHHHHHHHH
T ss_pred cccceEEEEEEEEEecCCCEEEEEEEEEEcccccccccceechHhHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999863
No 3
>3j20_A 30S ribosomal protein S3AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=1.7e-52 Score=331.10 Aligned_cols=113 Identities=32% Similarity=0.486 Sum_probs=108.3
Q ss_pred CCcccccceeEEeccccceeCCcCccceEEEEehhhhcCChhhhcceeEEEEEEeeecCceEEeEEeeeeecchhhhccc
Q psy11011 1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMV 80 (134)
Q Consensus 1 ~f~~r~~GkT~v~rt~G~~~A~d~lkGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~a~T~F~GmelT~DklrSlV 80 (134)
+|+.+++|+||+++ +|.++|||||+|||||+||+++ +|+||+|+|++|+|++|+|+|||||||+|||||||
T Consensus 26 ~F~~~~iG~T~~~~-------~~~l~GRv~EvsL~DL~~d~~~--~~~K~kf~i~~V~G~~a~T~F~G~~lT~DklrSlV 96 (198)
T 3j20_A 26 FFGGVEVGLTPADD-------PEKVLNRVVEVTLKDVTGDFTK--SHVKLYFQVYDVKGQNAYTKFKGMKLARSYIRSLV 96 (198)
T ss_dssp SSSCCCCCEEEEES-------SSCCSSCEEEECCCSSTTHHHH--HCCCEEEEEEEESSSEEEEEEEEECCCHHHHHHHC
T ss_pred hcCCceeEEEEccC-------cccccCeEEEEEHHHhcCChhh--heEEEEEEEEeccCCEEEEEEcceeechhhhhhhe
Confidence 79999999999999 5889999999999999999965 89999999999999999999999999999999999
Q ss_pred cceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeecceeeeee
Q psy11011 81 KKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIKIKV 131 (134)
Q Consensus 81 rk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~sqi~~i~ 131 (134)
|||+|+|||++||+|+|||+|||||+|||+++ ||+||+++|+
T Consensus 97 rk~~s~Iea~vdVkT~DGy~lRvf~i~fT~kr---------a~~sQ~~~IR 138 (198)
T 3j20_A 97 RRKTTRIDGIFNITTKDGYKLRVMAMAIAMRR---------IQTSQERAIR 138 (198)
T ss_dssp CSSSCEEEEEEEEECTTSCEEEEEEEEEECSS---------CCCTHHHHHH
T ss_pred ecceeEEEEEEEEEecCCCEEEEEEEEEEecc---------ccchhhhHHH
Confidence 99999999999999999999999999999994 8899998886
No 4
>3od9_A Putative exported protein; beta sandwich, C-terminal helix, hydrolase inhibitor; 1.41A {Aeromonas hydrophila}
Probab=38.64 E-value=24 Score=25.92 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=36.0
Q ss_pred ceEEEEehhhhcCChhhhcceeEE-----------EEEEeeecCceEEeEEeeeeecchhhhccccce
Q psy11011 27 HRVFEVSLADLQSDQDAERSFRKF-----------RLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKW 83 (134)
Q Consensus 27 GRv~EvsLaDL~~d~~~~~~~~K~-----------kf~i~~V~G~~a~T~F~GmelT~DklrSlVrk~ 83 (134)
|-++|.-|+||++|-.++..-... -|.+.+=.|-.-++.-.||+--.|.+..|=.++
T Consensus 59 GtI~~a~laDlngd~~~eLiVt~~sAGSG~Y~~~dA~~i~~~~~l~ll~~V~gl~~~~D~i~aLk~~~ 126 (135)
T 3od9_A 59 GSIKELKLLDLNGDKQPELIVVVESAGSGSYLSADAFTLNPQEGLDSFNHVEGLAPNEDVIQALKTPR 126 (135)
T ss_dssp SEEEEEEEECSSSSSSCEEEEEEECSSTTCCEEEEEEEEETTTEEEEEEEEEEECTTSCHHHHHHC--
T ss_pred CeEEEEEEEecCCCCCeeEEEEEEeecCCcceeEEEEEECCCCceEEEEEecccCCCccHHHHhhccc
Confidence 889999999999986443211111 122322223467788889998889888775543
No 5
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=16.86 E-value=39 Score=22.57 Aligned_cols=50 Identities=20% Similarity=0.281 Sum_probs=23.6
Q ss_pred ccccccee-EEeccccceeCCcCc--cceEEEEehhhhcCChhhhcceeEEEEEEeeecCc
Q psy11011 3 TNKQVGKT-LVNRTQGTKIASEGL--KHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60 (134)
Q Consensus 3 ~~r~~GkT-~v~rt~G~~~A~d~l--kGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~ 60 (134)
...+.||| |+++-.+........ .|..+.....++ + ...+.|.+-|..|.
T Consensus 16 G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~------~~~~~~~i~Dt~G~ 68 (181)
T 3tw8_B 16 GDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEI--N------GEKVKLQIWDTAGQ 68 (181)
T ss_dssp CCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEE--T------TEEEEEEEEEETTG
T ss_pred CCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEE--C------CEEEEEEEEcCCCc
Confidence 44577874 466666554433322 243333222222 1 13456777777774
No 6
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=15.73 E-value=9.1 Score=24.00 Aligned_cols=21 Identities=24% Similarity=0.569 Sum_probs=16.2
Q ss_pred Eeeeeecchhhhccccceeee
Q psy11011 66 FHGMDLTTDKLRSMVKKWQTL 86 (134)
Q Consensus 66 F~GmelT~DklrSlVrk~~s~ 86 (134)
=.||+---..+.||.|||.|+
T Consensus 27 edghddvgqrlesllrrwnsr 47 (60)
T 1pzq_A 27 EDGHDDVGQRLESLLRRWNSR 47 (60)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHhhc
Confidence 356776677889999999864
No 7
>3c5o_A UPF0311 protein RPA1785; beta-barrels, structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodopseudomonas palustris}
Probab=14.87 E-value=2.8e+02 Score=19.83 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.7
Q ss_pred eeeeEEEEEEEEeCCCcEEEEEEEEEe
Q psy11011 83 WQTLIEANVDVKTTDGYLLRLFCIGFT 109 (134)
Q Consensus 83 ~~s~Ie~~vdVkT~DGy~lRvf~i~fT 109 (134)
....+||..-++|.||-.+.|.--|+-
T Consensus 66 g~~~ldary~l~TdDGa~I~v~~~G~~ 92 (157)
T 3c5o_A 66 ELIELEAKYAFETDDGAVVYVENVGIR 92 (157)
T ss_dssp SCEEEEEEEEEEETTCCEEEEEEEEEE
T ss_pred CCEEEEEEEEEEcCCCCEEEEEEEEEE
Confidence 578899999999999999988887764
No 8
>3rn5_A Interferon-inducible protein AIM2; OB fold, DNA binding, cytosolic, immune system-DNA complex; HET: DNA; 2.50A {Homo sapiens} PDB: 3rn2_A*
Probab=13.71 E-value=1.3e+02 Score=23.55 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=31.1
Q ss_pred EEeeeeecchhhhccccceeeeEEEEEEEEeCCCcEEEEEEEEEeeeccCcccceeeeecceee
Q psy11011 65 NFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTCYAQHNQIK 128 (134)
Q Consensus 65 ~F~GmelT~DklrSlVrk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~kr~~~~~kt~Ya~~sqi~ 128 (134)
.+++..-.+.+|.=++--..+ +++-..|-+||+||.-.. .....++---.-||-|+
T Consensus 141 ~~YeI~DnTG~MeVvv~G~~~------~i~CEeGDKLrL~cFeL~--~~~~~~qL~s~~HSfik 196 (208)
T 3rn5_A 141 ILFDLSDNTGKMEVLGVRNED------TMKCKEGDKVRLTFFTLS--KNGEKLQLTSGVHSTIK 196 (208)
T ss_dssp EEEEEEETTEEEEEEEECSTG------GGSCCTTCEEEEEEEEEE--ECSSSEEEECCTTCEEE
T ss_pred EEEEEecCCCcEEEEEeccCc------ccccCCCCeeEEEEEEEe--ccCCeeeEEEecceeEE
Confidence 455555555555444432222 256789999999996554 33443443344445443
No 9
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=12.51 E-value=3.3e+02 Score=18.89 Aligned_cols=47 Identities=19% Similarity=0.087 Sum_probs=32.8
Q ss_pred ccceeEEeccccceeCCcCcc---ceEEEEehhhhcCChhhhcceeEEEEEEeeecCc
Q psy11011 6 QVGKTLVNRTQGTKIASEGLK---HRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60 (134)
Q Consensus 6 ~~GkT~v~rt~G~~~A~d~lk---GRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~ 60 (134)
-.|.|||-=+.|.+|.-+... |..|-|+-.+..|. |..+++|.+.|.
T Consensus 50 G~~rsLvvFSsgYrP~r~D~Vv~~Gk~y~Vtr~~~~ng--------k~~i~LE~~~~~ 99 (102)
T 2pp6_A 50 GNGKNVVVFSGNVIPRRGDRVVLRGSEFTVTRIRRFNG--------KPQLTLEENNGG 99 (102)
T ss_dssp --CEEEEECCSSCCCCTTCEEEETTEEEEEEEEEEETT--------EEEEEEEEC---
T ss_pred CCceEEEEecCCcccCCCCEEEEcCcEEEEEEEEEECC--------cEEEEEEeecCC
Confidence 357888888999999988654 99999988877543 666777766443
No 10
>3g7g_A UPF0311 protein CA_C3321; protein with unknown fuction, structural genomics, PSI, MCSG, protein structure initiative; 1.99A {Clostridium acetobutylicum atcc 824}
Probab=12.33 E-value=3.7e+02 Score=19.15 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=24.6
Q ss_pred ceeeeEEEEEEEEeCCCcEEEEEEEEEee
Q psy11011 82 KWQTLIEANVDVKTTDGYLLRLFCIGFTH 110 (134)
Q Consensus 82 k~~s~Ie~~vdVkT~DGy~lRvf~i~fT~ 110 (134)
.....+||..-++|.||-.+.|.--|+-.
T Consensus 68 dg~~~ldary~l~TdDG~~I~v~~~G~~~ 96 (158)
T 3g7g_A 68 DGKCELSARYAIRLDDGAAIYIENNGIRT 96 (158)
T ss_dssp TSCEEEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred CCCEEEEEEEEEEcCCCCEEEEEEEeeEc
Confidence 35678999999999999999888877744
Done!