Query psy11011
Match_columns 134
No_of_seqs 104 out of 295
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 15:56:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11011.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11011hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2je8a3 b.1.4.1 (A:679-783) Be 35.2 46 0.0033 20.5 5.7 14 27-40 58-71 (105)
2 d1k8qa_ c.69.1.6 (A:) Gastric 32.3 13 0.00098 25.6 2.7 26 80-106 20-45 (377)
3 d1pzqa_ a.34.3.1 (A:) Erythron 22.3 2.5 0.00018 25.3 -2.5 20 67-86 28-47 (60)
4 d2oq0a1 b.40.16.1 (A:115-202) 17.1 61 0.0044 20.5 3.3 39 66-110 32-70 (88)
5 d2vzsa3 b.1.4.1 (A:675-777) Ex 13.6 47 0.0034 20.9 2.1 17 24-40 22-38 (103)
6 d2fu5c1 c.37.1.8 (C:3-175) Rab 13.0 25 0.0018 22.7 0.6 51 3-61 13-66 (173)
7 d1qy9a1 d.21.1.2 (A:3-129) Hyp 11.4 53 0.0039 21.4 1.9 46 59-105 16-62 (127)
8 d2gjsa1 c.37.1.8 (A:91-258) Ra 8.5 48 0.0035 21.1 0.7 51 2-61 7-59 (168)
9 d2ew1a1 c.37.1.8 (A:4-174) Rab 7.7 39 0.0029 21.5 -0.1 16 3-18 12-28 (171)
10 d2oqza1 b.100.1.1 (A:35-253) H 7.3 1.6E+02 0.011 20.2 3.2 53 58-111 95-153 (219)
No 1
>d2je8a3 b.1.4.1 (A:679-783) Beta-mannosidase, domains 2, 4 and 5 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=35.25 E-value=46 Score=20.51 Aligned_cols=14 Identities=14% Similarity=0.235 Sum_probs=7.0
Q ss_pred ceEEEEehhhhcCC
Q psy11011 27 HRVFEVSLADLQSD 40 (134)
Q Consensus 27 GRv~EvsLaDL~~d 40 (134)
-.+++.++++|-++
T Consensus 58 ~~v~s~~~~~ll~~ 71 (105)
T d2je8a3 58 KCVYRAKLDGWLTP 71 (105)
T ss_dssp EEEEEEESTTTSCH
T ss_pred EEEEEEEHHHHhcC
Confidence 44555555555433
No 2
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris) [TaxId: 9615]}
Probab=32.28 E-value=13 Score=25.62 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=17.5
Q ss_pred ccceeeeEEEEEEEEeCCCcEEEEEEE
Q psy11011 80 VKKWQTLIEANVDVKTTDGYLLRLFCI 106 (134)
Q Consensus 80 Vrk~~s~Ie~~vdVkT~DGy~lRvf~i 106 (134)
|+.|.=-.|. ..|+|.||+.|+++=+
T Consensus 20 ~~~~~y~~e~-h~v~t~DG~~l~~~ri 45 (377)
T d1k8qa_ 20 ITYWGYPAEE-YEVVTEDGYILGIDRI 45 (377)
T ss_dssp HHHTTCCCEE-EEEECTTSEEEEEEEE
T ss_pred HHHcCCCceE-EEEEcCCCCEEEEEEe
Confidence 4444334455 4689999999988744
No 3
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=22.29 E-value=2.5 Score=25.33 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=15.1
Q ss_pred eeeeecchhhhccccceeee
Q psy11011 67 HGMDLTTDKLRSMVKKWQTL 86 (134)
Q Consensus 67 ~GmelT~DklrSlVrk~~s~ 86 (134)
.||+----.|.||.|||+|+
T Consensus 28 ~gh~dvg~rle~llrrw~sr 47 (60)
T d1pzqa_ 28 DGHDDVGQRLESLLRRWNSR 47 (60)
T ss_dssp SCCHHHHHHHHHHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHHhcc
Confidence 45655566788999999875
No 4
>d2oq0a1 b.40.16.1 (A:115-202) Gamma-interferon-inducible protein Ifi-16 {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.08 E-value=61 Score=20.50 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=23.9
Q ss_pred EeeeeecchhhhccccceeeeEEEEEEEEeCCCcEEEEEEEEEee
Q psy11011 66 FHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTH 110 (134)
Q Consensus 66 F~GmelT~DklrSlVrk~~s~Ie~~vdVkT~DGy~lRvf~i~fT~ 110 (134)
.+|..-.+..|.=++-...+. +.-..|-+||+||.-.++
T Consensus 32 ~YeI~D~TG~MeVvv~G~~~n------i~CeeGDKLrL~cFeL~~ 70 (88)
T d2oq0a1 32 IYEIQDDRGKMDVVGTGQCHN------IPCEEGDKLQLFCFRLRK 70 (88)
T ss_dssp EEEEEETTEEEEEEEEGGGSS------CCCCTTCEEEEEEEEEEE
T ss_pred EEEEecCCCcEEEEEeccEee------cccCCCCeEEEEEEEEEe
Confidence 344444555555555433333 456899999999965554
No 5
>d2vzsa3 b.1.4.1 (A:675-777) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}
Probab=13.58 E-value=47 Score=20.87 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=12.9
Q ss_pred CccceEEEEehhhhcCC
Q psy11011 24 GLKHRVFEVSLADLQSD 40 (134)
Q Consensus 24 ~lkGRv~EvsLaDL~~d 40 (134)
+..|+.+++.+.||.|.
T Consensus 22 ~~~~~~v~a~v~Dl~Gk 38 (103)
T d2vzsa3 22 AVSGLTATTKLYNLDGT 38 (103)
T ss_dssp CEEEEEEEEEEEETTSC
T ss_pred ccCCeEEEEEEEeCCCC
Confidence 35688888888888775
No 6
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}
Probab=13.01 E-value=25 Score=22.68 Aligned_cols=51 Identities=22% Similarity=0.224 Sum_probs=15.0
Q ss_pred cccccceeE-EeccccceeCCcC--ccceEEEEehhhhcCChhhhcceeEEEEEEeeecCce
Q psy11011 3 TNKQVGKTL-VNRTQGTKIASEG--LKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHN 61 (134)
Q Consensus 3 ~~r~~GkT~-v~rt~G~~~A~d~--lkGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~ 61 (134)
...++|||- ++|-.+....++. ..|..+.. ..++-+ ...+.|.+-|..|..
T Consensus 13 G~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~--~~~~~~------~~~~~l~i~D~~G~e 66 (173)
T d2fu5c1 13 GDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKI--RTIELD------GKRIKLQIWDTAGQE 66 (173)
T ss_dssp CCCCC----------------CHHHHHCEEEEE--EEEEET------TEEEEEEEEEC----
T ss_pred CCCCcCHHHHHHHHHhCCCCCccCccccceEEE--EEEEEC------CEEEEEEEEECCCch
Confidence 456788875 4566655433322 22433222 122212 245777788877754
No 7
>d1qy9a1 d.21.1.2 (A:3-129) Hypothetical protein YddE {Escherichia coli [TaxId: 562]}
Probab=11.36 E-value=53 Score=21.45 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=33.8
Q ss_pred CceEEeEEeeeeecchhhhccccceeeeEEEEEEEEeCCC-cEEEEEE
Q psy11011 59 GHNVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDG-YLLRLFC 105 (134)
Q Consensus 59 G~~a~T~F~GmelT~DklrSlVrk~~s~Ie~~vdVkT~DG-y~lRvf~ 105 (134)
|+-|-=-+..-.|+.|.|..+.+... .-|+.+-+...|+ |.+|+|.
T Consensus 16 GNpa~Vv~~~~~l~~~~mq~IA~e~n-~sETaFv~~~~~~~~~iR~FT 62 (127)
T d1qy9a1 16 GNSAGVVFPADNLSEAQMQLIARELG-HSETAFLLHSDDSDVRIRYFT 62 (127)
T ss_dssp SEEEEEEECCTTCCHHHHHHHHHHHC-CSCEEEEECCSSSSEEEEEEC
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhC-CceEEEEecCCCCcEEEEEEe
Confidence 55555566777889999988877764 4466666777777 8999984
No 8
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.46 E-value=48 Score=21.12 Aligned_cols=51 Identities=20% Similarity=0.246 Sum_probs=22.1
Q ss_pred Cccccccee-EEeccccceeCCcCc-cceEEEEehhhhcCChhhhcceeEEEEEEeeecCce
Q psy11011 2 FTNKQVGKT-LVNRTQGTKIASEGL-KHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGHN 61 (134)
Q Consensus 2 f~~r~~GkT-~v~rt~G~~~A~d~l-kGRv~EvsLaDL~~d~~~~~~~~K~kf~i~~V~G~~ 61 (134)
+...++||| |++|-.+......+. .+-.+..++ .+ | ...+.|.+-|..|..
T Consensus 7 vG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~i-~~--~------~~~~~l~i~D~~g~e 59 (168)
T d2gjsa1 7 LGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSI-VV--D------GEEASLMVYDIWEQD 59 (168)
T ss_dssp ECCTTSSHHHHHHHHHTC---------CEEEEEEE-EE--T------TEEEEEEEEECC---
T ss_pred ECCCCcCHHHHHHHHhCCccCCcCCeeeeeeccee-ec--c------ccccceeeeeccccc
Confidence 356788986 667666654433322 233332221 01 1 235677777777754
No 9
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.69 E-value=39 Score=21.52 Aligned_cols=16 Identities=50% Similarity=0.524 Sum_probs=8.9
Q ss_pred ccccccee-EEeccccc
Q psy11011 3 TNKQVGKT-LVNRTQGT 18 (134)
Q Consensus 3 ~~r~~GkT-~v~rt~G~ 18 (134)
...++||| |++|-.+.
T Consensus 12 G~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 12 GNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp ESTTSSHHHHHHHHHHS
T ss_pred CCCCcCHHHHHHHHHhC
Confidence 34678886 44554443
No 10
>d2oqza1 b.100.1.1 (A:35-253) Hypothetical protein BA4783 {Bacillus anthracis [TaxId: 1392]}
Probab=7.33 E-value=1.6e+02 Score=20.23 Aligned_cols=53 Identities=21% Similarity=0.150 Sum_probs=38.9
Q ss_pred cCceEEeEEeeeeecchhhhccccceeeeEEE-----EEEEEeCCC-cEEEEEEEEEeee
Q psy11011 58 QGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEA-----NVDVKTTDG-YLLRLFCIGFTHK 111 (134)
Q Consensus 58 ~G~~a~T~F~GmelT~DklrSlVrk~~s~Ie~-----~vdVkT~DG-y~lRvf~i~fT~k 111 (134)
.|..-.+..+||.+....|.+-+.+.... +. .+.+.|.++ |..+||.+-....
T Consensus 95 ~~~~~n~iIyGHnm~~g~mF~~L~~~~~~-d~~~~h~~i~i~t~~~~~~Y~V~~~~~v~~ 153 (219)
T d2oqza1 95 KSQNRNTILYGHRMKDGSMFGSLKKMLDE-EFFMSHRKLYYDTLFEGYDLEVFSVYTTTT 153 (219)
T ss_dssp TSCCSEEEEECCBCTTSTBTGGGGGGGSH-HHHHHCCEEEEEESSCEEEEEEEEEEECSS
T ss_pred CCCCCeEEEEeCCCCCCCcccCHHHhhch-hhHhhCCeEEEEeCCcEEEEEEEEEEEECC
Confidence 45566788999999999998888887632 10 356778777 6789888866643
Done!