RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy11011
(134 letters)
>3u5c_B RP10A, 40S ribosomal protein S1-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3u5g_B
Length = 255
Score = 152 bits (386), Expect = 1e-47
Identities = 77/128 (60%), Positives = 94/128 (73%), Gaps = 2/128 (1%)
Query: 1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
F N+ VGKTLVN++ G K AS+ LK RV EV LADLQ +D SFRK +L ++VQG
Sbjct: 37 TFENRNVGKTLVNKSTGLKSASDALKGRVVEVCLADLQGSED--HSFRKIKLRVDEVQGK 94
Query: 61 NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKDQLSQRKTC 120
N+LTNFHGMD TTDKLRSMV+KWQTLIEANV VKT+D Y+LR+F I FT K ++
Sbjct: 95 NLLTNFHGMDFTTDKLRSMVRKWQTLIEANVTVKTSDDYVLRIFAIAFTRKQANQVKRHS 154
Query: 121 YAQHNQIK 128
YAQ + I+
Sbjct: 155 YAQSSHIR 162
>2xzm_4 40S ribosomal protein S3A; ribosome, translation; 3.93A
{Tetrahymena thermophila} PDB: 2xzn_4
Length = 265
Score = 144 bits (365), Expect = 3e-44
Identities = 61/131 (46%), Positives = 94/131 (71%), Gaps = 4/131 (3%)
Query: 1 MFTNKQVGKTLVNRTQGTKIASEGLKHRVFEVSLADLQSDQDAERSFRKFRLIAEDVQGH 60
F++K GKTLV ++ G +IASE +K RV E +LADL+ + ++++RK +L+ ++V G
Sbjct: 39 PFSSKSFGKTLVTKSSGNRIASEEIKGRVVESTLADLKDN-SNDKAWRKVKLVIDEVDGR 97
Query: 61 NVLTNFHGMDLTTDKLRSMVKKWQTLIEANVDVKTTDGYLLRLFCIGFTHKD---QLSQR 117
N T+F+G+D+T D+L SM++KWQTLIEA VD KT DGY++R+F + FT K + S
Sbjct: 98 NAKTSFYGLDITRDRLCSMIRKWQTLIEARVDCKTNDGYIIRVFTLAFTKKTSAGKQSST 157
Query: 118 KTCYAQHNQIK 128
TCYA+ +Q++
Sbjct: 158 STCYAKSSQVR 168
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.6 bits (68), Expect = 0.15
Identities = 26/130 (20%), Positives = 52/130 (40%), Gaps = 29/130 (22%)
Query: 25 LKHRVFEVSLADLQSDQDAE--RSFR---------KFRLIAEDVQGHN---VLTNFHGMD 70
LK + +E L L + Q+A+ +F +F+ + + + + + H M
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297
Query: 71 LTTDKLRSMVKKWQTLIEANVDVKTTD-------GYLLRLFCIGFTHKDQLSQRKTCYAQ 123
LT D+++S++ K+ +D + D RL I + +D L+ +
Sbjct: 298 LTPDEVKSLLLKY-------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN-WKH 349
Query: 124 HNQIKIKVTI 133
N K+ I
Sbjct: 350 VNCDKLTTII 359
>3ll8_B Calcineurin subunit B type 1; protein-peptide docking, protein
targeting, AKA beta-augmentation, calmodulin-binding,
membrane, hydrolase; 2.00A {Homo sapiens} PDB: 1mf8_B*
2p6b_B 1aui_B 1m63_B* 1tco_B*
Length = 155
Score = 28.4 bits (64), Expect = 0.52
Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 10/71 (14%)
Query: 30 FEVSLADLQSDQDAERSFRK-FRLIAEDVQG-------HNVLTNFHGMDLTTDKLRSMVK 81
F ++ D E+ R FR+ D G VL G +L +L+ +V
Sbjct: 60 FIEGVSQFSVKGDKEQKLRFAFRIYDMDKDGYISNGELFQVLKMMVGNNLKDTQLQQIVD 119
Query: 82 KWQTLIEANVD 92
K T+I A+ D
Sbjct: 120 K--TIINADKD 128
>2boa_A Carboxypeptidase A4; metalloprocarboxypeptidase, X-RAY zymogen,
metalloprotease, exopropeptidase, hydrolase; HET: NAG;
2.20A {Homo sapiens} SCOP: c.56.5.1 d.58.3.1
Length = 404
Score = 27.9 bits (62), Expect = 0.95
Identities = 9/79 (11%), Positives = 27/79 (34%)
Query: 30 FEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKKWQTLIEA 89
+ V++ DLQ+ D E + E + +H ++ ++ ++ + L
Sbjct: 70 YAVTIEDLQALLDNEDDEMQHNEGQERSSNNFNYGAYHSLEAIYHEMDNIAADFPDLARR 129
Query: 90 NVDVKTTDGYLLRLFCIGF 108
+ + + +
Sbjct: 130 VKIGHSFENRPMYVLKFST 148
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 26.9 bits (59), Expect = 2.1
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 92 DVKTTDGYLLRLFCI--GFTHKDQLSQRKTCYAQH 124
+V T DGY+L + I G + + + +R + QH
Sbjct: 31 EVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQH 65
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION,
transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A*
3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A*
1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A*
1yhj_A*
Length = 312
Score = 26.7 bits (59), Expect = 2.5
Identities = 9/36 (25%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 66 FHGMDLTTDKLRSMVKKWQTLIEANVD-VKTTDGYL 100
+ G L +D+L+ + + + D V T GY
Sbjct: 52 WKGQVLNSDELQELYEGLRLNNMNKYDYVLT--GYT 85
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 25.1 bits (56), Expect = 7.3
Identities = 7/16 (43%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 7 VGK-TLVNRTQGTKIA 21
VGK +L NR + A
Sbjct: 12 VGKSSLFNRLLKKRSA 27
>1pca_A Procarboxypeptidase A PCPA; hydrolase(C-terminal peptidase); HET:
CIT; 2.00A {Sus scrofa} SCOP: d.58.3.1 PDB: 1pyt_A
Length = 403
Score = 25.1 bits (55), Expect = 8.3
Identities = 7/53 (13%), Positives = 18/53 (33%)
Query: 30 FEVSLADLQSDQDAERSFRKFRLIAEDVQGHNVLTNFHGMDLTTDKLRSMVKK 82
+ + + D+Q D E+ +H ++ D + +V +
Sbjct: 71 YTIMIEDVQLLLDEEQEQMFASQGRARTTSTFNYATYHTLEEIYDFMDILVAE 123
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem
G-domains, ligand binding protein; HET: GDP; 1.90A
{Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Length = 439
Score = 25.2 bits (56), Expect = 8.3
Identities = 8/16 (50%), Positives = 9/16 (56%), Gaps = 1/16 (6%)
Query: 7 VGK-TLVNRTQGTKIA 21
VGK TL N+ K A
Sbjct: 12 VGKSTLFNKLVKKKKA 27
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 25.1 bits (56), Expect = 9.5
Identities = 8/16 (50%), Positives = 11/16 (68%), Gaps = 1/16 (6%)
Query: 7 VGK-TLVNRTQGTKIA 21
VGK T+ NR G +I+
Sbjct: 14 VGKSTIFNRIAGERIS 29
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.134 0.384
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,830,146
Number of extensions: 96101
Number of successful extensions: 198
Number of sequences better than 10.0: 1
Number of HSP's gapped: 195
Number of HSP's successfully gapped: 16
Length of query: 134
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 51
Effective length of database: 4,384,350
Effective search space: 223601850
Effective search space used: 223601850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.3 bits)