Query psy11013
Match_columns 176
No_of_seqs 109 out of 320
Neff 4.3
Searched_HMMs 46136
Date Fri Aug 16 15:58:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11013.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/11013hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1628|consensus 100.0 2E-54 4.3E-59 368.3 8.0 148 10-162 89-247 (249)
2 PF01015 Ribosomal_S3Ae: Ribos 100.0 1.7E-44 3.6E-49 299.6 10.8 113 10-136 73-194 (194)
3 PRK04057 30S ribosomal protein 100.0 6.3E-44 1.4E-48 298.4 12.2 115 10-138 67-190 (203)
4 COG1890 RPS1A Ribosomal protei 100.0 2E-42 4.3E-47 290.7 11.9 126 10-149 75-209 (214)
5 cd03407 Band_7_4 A subgroup of 62.6 27 0.00059 29.7 6.4 86 39-131 51-136 (262)
6 PF03645 Tctex-1: Tctex-1 fami 55.8 26 0.00057 25.3 4.5 59 77-135 2-61 (101)
7 PF03748 FliL: Flagellar basal 47.8 97 0.0021 21.9 6.6 58 72-129 36-96 (99)
8 PF08388 GIIM: Group II intron 46.1 19 0.00042 24.7 2.3 29 75-103 1-29 (80)
9 cd03399 Band_7_flotillin Band_ 42.3 72 0.0016 23.8 5.1 54 75-130 57-110 (128)
10 PF01145 Band_7: SPFH domain / 39.6 1.1E+02 0.0024 23.2 5.9 57 73-131 88-144 (179)
11 PF02847 MA3: MA3 domain; Int 33.6 69 0.0015 23.1 3.7 25 78-102 1-25 (113)
12 cd03401 Band_7_prohibitin Band 33.4 89 0.0019 24.7 4.6 54 76-131 92-145 (196)
13 KOG2620|consensus 30.2 2E+02 0.0043 26.2 6.6 86 39-129 65-153 (301)
14 TIGR00279 L10e ribosomal prote 29.6 82 0.0018 26.4 3.9 64 12-92 6-79 (172)
15 PF10163 EnY2: Transcription f 28.6 1.1E+02 0.0025 22.1 4.1 40 77-116 35-82 (86)
16 cd03400 Band_7_1 A subgroup of 24.8 1.1E+02 0.0024 22.5 3.6 56 75-131 52-107 (124)
17 PF10407 Cytokin_check_N: Cdc1 24.4 65 0.0014 23.3 2.2 19 105-123 16-34 (73)
18 smart00244 PHB prohibitin homo 24.3 3E+02 0.0065 20.4 6.7 84 39-132 58-144 (160)
19 smart00544 MA3 Domain in DAP-5 23.9 92 0.002 22.6 3.0 26 78-103 1-26 (113)
20 PF08496 Peptidase_S49_N: Pept 23.6 1.1E+02 0.0024 25.0 3.6 31 49-89 98-128 (155)
21 KOG0930|consensus 23.2 35 0.00077 31.4 0.7 46 113-163 298-348 (395)
22 cd03405 Band_7_HflC Band_7_Hfl 21.8 3.6E+02 0.0077 22.1 6.4 84 39-131 57-145 (242)
23 cd03404 Band_7_HflK Band_7_Hfl 21.6 3.4E+02 0.0074 22.7 6.3 85 39-131 83-169 (266)
No 1
>KOG1628|consensus
Probab=100.00 E-value=2e-54 Score=368.30 Aligned_cols=148 Identities=51% Similarity=0.791 Sum_probs=138.8
Q ss_pred CCceeeEeeeccc-cchhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHH
Q psy11013 10 EKMSCVVGALSFN-LSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRK 80 (176)
Q Consensus 10 ~~~~a~T~F~g~~-t~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRk 80 (176)
.++||+|.|+||+ |+|++|||++||+|+| +|||+ ||+||++||+++.||.++||||+++|+++||+
T Consensus 89 qgkN~lt~f~GmdlT~dK~~smvkKwqt~ieA~v~vkT~dgy~-----Lrlf~i~ftkk~~nqv~ktsyaq~~qv~~irk 163 (249)
T KOG1628|consen 89 QGKNCLTNFHGMDLTRDKLVSMVKKWQTLIEAVVDVKTTDGYL-----LRLFCIGFTKKLVNQVKKTSYAQHGQVRQIRK 163 (249)
T ss_pred cCcccceeccCcchhhhhhhhhhhhhhheeeeeEEeecccCce-----EEeeehHHHHHhhcccCCceeeecchHHHHHH
Confidence 4789999999999 9999999999999999 89999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEeeecchhhhhhhhhhccCCCCC--cccCCC
Q psy11013 81 KMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEGKGG--ATIDES 158 (176)
Q Consensus 81 km~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKVlk~Pk~d~~kl~e~h~e~~~~--~~~~~~ 158 (176)
+|.+||++|++++||+++||+||||+|+++||++|+.|||||||+|||||+||.|+||||||||||||++++ ++...+
T Consensus 164 ~m~ei~~~evs~~Dlk~vvnKLipd~igKdiEka~~~iyPL~~v~vRKVK~lK~pkfelGkl~eLHGegss~gk~~~~~~ 243 (249)
T KOG1628|consen 164 EMMEIMTQEVSTSDLKEVVNKLIPDSIGKDIEKACQSIYPLHDVFVRKVKMLKKPKFELGKLMELHGEGSSSGKATGDKT 243 (249)
T ss_pred HHHHHHHhccccccHHHHHHHhchhhhhhHHHhhccccccchhheeeeeeccccccchhhHHHHHhcccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998643 223334
Q ss_pred ccee
Q psy11013 159 GETV 162 (176)
Q Consensus 159 g~~v 162 (176)
|.++
T Consensus 244 ~a~~ 247 (249)
T KOG1628|consen 244 GAKV 247 (249)
T ss_pred cccc
Confidence 4443
No 2
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=100.00 E-value=1.7e-44 Score=299.56 Aligned_cols=113 Identities=43% Similarity=0.694 Sum_probs=98.8
Q ss_pred CCceeeEeeeccc-cchhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHH
Q psy11013 10 EKMSCVVGALSFN-LSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRK 80 (176)
Q Consensus 10 ~~~~a~T~F~g~~-t~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRk 80 (176)
+|+||+|.|+||+ |+||||||||||+|+| +|||+ ||+||+|||.++ |++||+++||+
T Consensus 73 ~g~~a~T~F~G~elt~D~lrSlvrk~~s~Ie~~~dvkT~DGy~-----lRvf~i~fT~~r---------a~~sq~~~IRk 138 (194)
T PF01015_consen 73 QGNNALTNFHGMELTRDKLRSLVRKWQSRIEAIVDVKTKDGYL-----LRVFCIAFTKKR---------AKSSQIKAIRK 138 (194)
T ss_dssp ETTEEEEEEEEEE--HHHHHHC--TTC-EEEEEEEEEETTTEE-----EEEEEEEEE-------------TCHHHHHHHH
T ss_pred cCCEEEEEEcceecchhhhhcceeecceEEEEEEEEEcCCCcE-----EEEEEEEEEeec---------ccchHHHHHHH
Confidence 5779999999999 9999999999999999 89999 999999999999 99999999999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEeeecch
Q psy11013 81 KMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPR 136 (176)
Q Consensus 81 km~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKVlk~Pk 136 (176)
+|.++|++++++++|+|||++|++|+|++||+++|++|||||+|+|||||||+.|+
T Consensus 139 ~m~~ii~~~~~~~~~~e~V~~li~~~i~~eI~k~~k~IyPl~~v~IrKvKvlk~Pk 194 (194)
T PF01015_consen 139 KMVEIITEEASELDLKELVKKLIPGSIGKEIEKACKKIYPLRNVEIRKVKVLKKPK 194 (194)
T ss_dssp HHHHHHHHHCCTSHHHHHHHHHCTTHHHHHHHHHHCTT--EEEEEEEEEEEEE---
T ss_pred HHHHHHHHHhccCcHHHHHHHHccchHHHHHHHHhccccccceEEEEEEEEeccCC
Confidence 99999999999999999999999999999999999999999999999999999996
No 3
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=100.00 E-value=6.3e-44 Score=298.42 Aligned_cols=115 Identities=26% Similarity=0.319 Sum_probs=112.0
Q ss_pred CCceeeEeeeccc-cchhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHH
Q psy11013 10 EKMSCVVGALSFN-LSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRK 80 (176)
Q Consensus 10 ~~~~a~T~F~g~~-t~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRk 80 (176)
.|+||+|+|+||+ |+||||||||||+|+| +|||+ ||+||+|||.+| |++||+++||+
T Consensus 67 ~G~~a~T~F~G~~lTrD~lrSlVrk~~S~Ie~~vdvkTkDGy~-----lRv~~i~~T~~r---------a~~sq~~~IRk 132 (203)
T PRK04057 67 EGDKAYTRFIGHELTRDYLRSLVRRRTSKIDAIVDVTTKDGYK-----VRVKPVALTTKR---------ARTSQKHAIRK 132 (203)
T ss_pred eCCEEEEEEeeeEecHHHHHhHhccCceeEEEEEEEEcCCCCE-----EEEEEEEEEchh---------hhhhHHHHHHH
Confidence 3569999999999 9999999999999999 99999 999999999999 99999999999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEeeecchhh
Q psy11013 81 KMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFE 138 (176)
Q Consensus 81 km~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKVlk~Pk~d 138 (176)
+|.++|.+++++++|+|||+++++|+|++||+++|++|||||+|+|||+|||+.|+-.
T Consensus 133 ~m~~~i~~~~~~~~~~e~V~~~i~g~i~~eI~~~~k~IyPlr~veIrKvkvl~~p~~~ 190 (203)
T PRK04057 133 IMEEIIEEKASELTFEEFVQEIVFGKLASEIYKEAKKIYPLRRVEIRKSKVLARPEEV 190 (203)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHccchHHHHHHHhhhhccCcceEEEEEEEEEecCccc
Confidence 9999999999999999999999999999999999999999999999999999999944
No 4
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-42 Score=290.69 Aligned_cols=126 Identities=32% Similarity=0.424 Sum_probs=121.3
Q ss_pred CCceeeEeeeccc-cchhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHH
Q psy11013 10 EKMSCVVGALSFN-LSSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRK 80 (176)
Q Consensus 10 ~~~~a~T~F~g~~-t~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRk 80 (176)
+|++|+|.|+||+ |+||+|||||||+|+| +|||. +|||++|||.+| |++||.++||+
T Consensus 75 ~G~~a~T~F~GheltrDyiRslVRR~~SrIdai~dVkTkDGy~-----~RV~~~~~T~~r---------a~tSqk~aIRk 140 (214)
T COG1890 75 EGDKALTRFKGHELTRDYIRSLVRRRTSRIDAIVDVKTKDGYV-----LRVKAMAFTRRR---------AKTSQKRAIRK 140 (214)
T ss_pred cCcEeeEEEeccchhHHHHHHHHhcccceeeeEEEEEecCCcE-----EEEEEEEEEehh---------cccchHHHHHH
Confidence 7899999999999 9999999999999999 89999 999999999999 99999999999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEeeecchhhhhhhhhhccCC
Q psy11013 81 KMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEG 149 (176)
Q Consensus 81 km~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKVlk~Pk~d~~kl~e~h~e~ 149 (176)
+|.|+|.+.+++++|++||++|++|.|+++|+++|++|||||+|+|||+|||+.|..+-....++|+++
T Consensus 141 ~M~eii~~~a~e~~f~~fv~~li~g~i~~~I~~~akkIyPLr~veIrK~kvl~~p~~~~~~~~~~~~~~ 209 (214)
T COG1890 141 IMFEIIEEKASELTFEEFVQELIPGRIAAEIEEAAKKIYPLRKVEIRKSKVLKEPKEAEPEQAVLHGES 209 (214)
T ss_pred HHHHHHHHHhccCCHHHHHHHHhhhhHHHHHHHHhhhcccchheEEEeeeeeccCcccccchhcccccc
Confidence 999999999999999999999999999999999999999999999999999999998866677777764
No 5
>cd03407 Band_7_4 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=62.61 E-value=27 Score=29.65 Aligned_cols=86 Identities=13% Similarity=0.123 Sum_probs=60.6
Q ss_pred ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhcccc
Q psy11013 39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGI 118 (176)
Q Consensus 39 ~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRkkm~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~I 118 (176)
+||.. +.+-...+-+=......+-+|--......|+..+...+.+.+...++++++.. -+.|..+|.+..+..
T Consensus 51 kD~~~-----V~vd~~v~yrI~d~~~~~~~~~~~~~~~~l~~~~~s~lR~vig~~~l~eil~~--R~~I~~~i~~~l~~~ 123 (262)
T cd03407 51 KDNVF-----VTVVGQIQYRVSEENATDAFYKLGNPEEQIQSYVFDVLRARIPKLTLDELFEQ--KDEIAKAVEEELREA 123 (262)
T ss_pred CCCCE-----EEEEEEEEEEECCcHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccHHHHHhh--HHHHHHHHHHHHHHH
Confidence 79988 77777665554322222455555556679999999999999999999999964 366777777666665
Q ss_pred ccccceeEEEEEe
Q psy11013 119 YPLHDVFIRKVKV 131 (176)
Q Consensus 119 yPl~~V~IrKvKV 131 (176)
.--.-|.|..|.+
T Consensus 124 l~~~GI~V~~v~I 136 (262)
T cd03407 124 MSRYGFEIVATLI 136 (262)
T ss_pred HHhcCcEEEEEEE
Confidence 5445666666654
No 6
>PF03645 Tctex-1: Tctex-1 family; InterPro: IPR005334 Tctex-1 is a dynein light chain. Dynein translocates rhodopsin-bearing vesicles along microtubules and it has been shown that Tctex-1 can bind to the cytoplasmic tail of rhodopsin. An efficient vectorial transport system must be required to deliver large numbers of newly synthesized rhodopsin molecules (~107 molecules per day per photoreceptor) to the base of the outer segment of the photoreceptor, Tctex-1 may well play a role in this process. C-terminal rhodopsin mutations responsible for retinitis pigmentosa inhibit the interaction between Tctex-1 and rhodopsin, which may be the molecular basis of retinitis pigmentosa. In the mouse, the chromosomal location and pattern of expression of Tctex-1 make it a candidate for involvement in male sterility [].; PDB: 1YGT_A 3FM7_A 2PG1_E 1XDX_B.
Probab=55.77 E-value=26 Score=25.34 Aligned_cols=59 Identities=15% Similarity=0.274 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhcccc-ccccceeEEEEEeeecc
Q psy11013 77 QIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGI-YPLHDVFIRKVKVLKKP 135 (176)
Q Consensus 77 ~IRkkm~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~I-yPl~~V~IrKvKVlk~P 135 (176)
.++..|.++|.+.+....++.---.-....|+.+|..+.+.. ||-+-=+|--+-+..+.
T Consensus 2 ~v~~ii~~~l~~~l~~~~Y~~~~~~~~~~~I~~~i~~~lk~~~~~~ryK~iv~~~I~q~~ 61 (101)
T PF03645_consen 2 EVKEIIEEVLEEKLEDQKYDPEKAQQWSKEISDEILERLKKLGYSKRYKFIVQVTIGQKN 61 (101)
T ss_dssp HHHHHHHHHHHHHHCTS---HHHHHHHHHHHHHHHHHHHHCC--T-SCEEEEEEEEEETT
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEecC
Confidence 588999999999999999988777777889999999999999 53443345556666543
No 7
>PF03748 FliL: Flagellar basal body-associated protein FliL; InterPro: IPR005503 This FliL protein controls the rotational direction of the flagella during chemotaxis []. FliL is a cytoplasmic membrane protein associated with the basal body [].; GO: 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009425 bacterial-type flagellum basal body
Probab=47.81 E-value=97 Score=21.87 Aligned_cols=58 Identities=10% Similarity=0.227 Sum_probs=40.9
Q ss_pred chhhHHHHHHHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhcccccc---ccceeEEEE
Q psy11013 72 KTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYP---LHDVFIRKV 129 (176)
Q Consensus 72 ~SQvr~IRkkm~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyP---l~~V~IrKv 129 (176)
...+.+-...+.+.+...+++.+.+++-..-=...|.++|....+++++ +.+|++.+.
T Consensus 36 ~~~~~~~~~~ird~ii~~l~~~~~~~l~~~~g~~~Lk~~l~~~in~~l~~~~V~~V~ft~f 96 (99)
T PF03748_consen 36 AEELESNMPRIRDAIISYLSSKTAEDLSGPEGKERLKDELKDRINKILGKGKVKDVYFTDF 96 (99)
T ss_pred HHHHHhccHHHHHHHHHHHHcCCHHHhcChhhHHHHHHHHHHHHHHhhccCcEEEEEEEEE
Confidence 5556555667788888888899998887655556677777777776663 666666653
No 8
>PF08388 GIIM: Group II intron, maturase-specific domain; InterPro: IPR013597 This region is found mainly in various bacterial and archaeal species, but a few members of this family are expressed by fungal and chlamydomonal species. It has been implicated in the binding of intron RNA during reverse transcription and splicing [].
Probab=46.14 E-value=19 Score=24.68 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHhC
Q psy11013 75 VRQIRKKMVEIIINEVVKSDLKEVVNKLL 103 (176)
Q Consensus 75 vr~IRkkm~eii~~e~~~~~l~e~V~kli 103 (176)
++.+++++.+++.+.....++.+++.+|-
T Consensus 1 ik~~~~kik~~~~~~~~~~~~~~~i~~LN 29 (80)
T PF08388_consen 1 IKRFRRKIKEITRRRNRGKSLEELIKKLN 29 (80)
T ss_pred CHHHHHHHHHHHhCCCCCCCHHHHHHHHH
Confidence 46789999999888888899999998763
No 9
>cd03399 Band_7_flotillin Band_7_flotillin: a subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. These two proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and, interact with a variety of proteins. Flotillins may play a role in the progression of prion disease, in the pathogenesis of neurodegenerative diseases such as Parkinson's and Alzheimer's disease and, in cancer invasion and metastasis.
Probab=42.31 E-value=72 Score=23.79 Aligned_cols=54 Identities=7% Similarity=0.079 Sum_probs=34.4
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEE
Q psy11013 75 VRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVK 130 (176)
Q Consensus 75 vr~IRkkm~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvK 130 (176)
...|+..+...+...+++.+++|++.. .+.|..+|.+....-..=.-++|..+.
T Consensus 57 ~~~l~~~~~~~lR~~ig~~tl~el~~~--R~~i~~~i~~~v~~~~~~~Gi~i~~v~ 110 (128)
T cd03399 57 EELVKEVLEGHLRAVVGTMTVEEIYED--RDKFAEQVQEVVAPDLNKMGLELDSFT 110 (128)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHh--HHHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 556677778899999999999999975 444555555444443222234444443
No 10
>PF01145 Band_7: SPFH domain / Band 7 family; InterPro: IPR001107 Band 7 protein is an integral membrane protein which is thought to regulate cation conductance. A variety of proteins belong to this family. These include the prohibitins, cytoplasmic anti-proliferative proteins and stomatin, an erythrocyte membrane protein. Bacterial HflC protein also belongs to this family. Note: Band 4.1 (IPR021187 from INTERPRO) and Band 7 proteins refer to human erythrocyte membrane proteins separated by SDS polyacrylamide gels and stained with coomassie blue [].; PDB: 2RPB_A 3BK6_B 1WIN_A.
Probab=39.61 E-value=1.1e+02 Score=23.18 Aligned_cols=57 Identities=16% Similarity=0.226 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEe
Q psy11013 73 THVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKV 131 (176)
Q Consensus 73 SQvr~IRkkm~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKV 131 (176)
--...||......+.+.+++.++.++.+. ...+.+++.+..+.-+-=..++|..+.+
T Consensus 88 ~~~~~l~~~~~~~~r~~~~~~~~~~~~~~--r~~~~~~v~~~l~~~~~~~Gi~i~~v~i 144 (179)
T PF01145_consen 88 DPENLLRQIVESALREVISSYSLEEIYSN--REEIADEVREQLQEALEEYGIEITSVQI 144 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS-HHHHHHT--HHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred hhhhhhhhhhhhhhheEeeeeehHHhhhh--hhhhhHhHHHHHhhhccccEEEEEEEEE
Confidence 45678999999999999999999999977 3566666666555555445566666553
No 11
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=33.58 E-value=69 Score=23.11 Aligned_cols=25 Identities=32% Similarity=0.534 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHh
Q psy11013 78 IRKKMVEIIINEVVKSDLKEVVNKL 102 (176)
Q Consensus 78 IRkkm~eii~~e~~~~~l~e~V~kl 102 (176)
+|+++..+|.+.....|.+|++..+
T Consensus 1 ~rk~i~~~l~ey~~~~d~~ea~~~l 25 (113)
T PF02847_consen 1 LRKKIFSILMEYFSSGDVDEAVECL 25 (113)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHH
T ss_pred ChHHHHHHHHHHhcCCCHHHHHHHH
Confidence 5899999999999999999998765
No 12
>cd03401 Band_7_prohibitin Band_7_prohibitin. A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup group includes proteins similar to prohibitin (a lipid raft-associated integral membrane protein). Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. These microdomains in addition to being stable scaffolds may also be also dynamic units with their own regulatory functions. Prohibitin is a mitochondrial inner-membrane protein which may act as a chaperone for the stabilization of mitochondrial proteins. Human prohibitin forms a heter-oligomeric complex with Bap-37 (prohibitin 2, a band 7 domain carrying homologue). This complex may protect non-assembled membrane proteins against proteolysis by the m-AAA protease. Prohibitin and Bap-37 yeast homologues have been implicated in yeast longevity and, in the maintenance of mitochondrial morphology.
Probab=33.41 E-value=89 Score=24.74 Aligned_cols=54 Identities=11% Similarity=0.198 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEe
Q psy11013 76 RQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKV 131 (176)
Q Consensus 76 r~IRkkm~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKV 131 (176)
..|+....+.+.+.++..+++|++.+ .+.|+.+|.+.++.-.--..+.|..+.+
T Consensus 92 ~~i~~~v~~~lR~vi~~~~~~ei~~~--R~~i~~~i~~~l~~~l~~~Gi~i~~v~i 145 (196)
T cd03401 92 RVLPSIINEVLKAVVAQFTAEELITQ--REEVSALIREALTERAKDFGIILDDVSI 145 (196)
T ss_pred hhhcHHHHHHHHHHHccCCHHHHHhh--HHHHHHHHHHHHHHHHHhCCeEEEEEEE
Confidence 45788888999999999999999864 5667777776666544444466666654
No 13
>KOG2620|consensus
Probab=30.24 E-value=2e+02 Score=26.22 Aligned_cols=86 Identities=16% Similarity=0.050 Sum_probs=61.3
Q ss_pred ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHHHHHHHHHHHHhhCCHHHHHH--HhCCchHHHHHHHhcc
Q psy11013 39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVN--KLLPDSIAKEIEKKCQ 116 (176)
Q Consensus 39 ~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRkkm~eii~~e~~~~~l~e~V~--kli~~~I~keIek~~k 116 (176)
+|+-. |++-++-.-+--.....-.+|==..=.-+|-.-..++|..++.+++|+.+.. .-+..+|-.+|.|+..
T Consensus 65 kDNV~-----v~idgvly~rv~dp~~~dAsYgvenp~~aI~qlaqttmRsevgkltLD~vFeer~~ln~sI~eainkA~~ 139 (301)
T KOG2620|consen 65 KDNVF-----VQIDGVLYYRVVDPYADDASYGVENPEYAIQQLAQTTMRSEVGKLTLDKVFEERNSLNKSIVEAINKAME 139 (301)
T ss_pred cccEE-----EEEEEEEEEEEecccccccccccCCHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877 6666654443332222237777777788899999999999999999999874 4788888888888766
Q ss_pred cc-ccccceeEEEE
Q psy11013 117 GI-YPLHDVFIRKV 129 (176)
Q Consensus 117 ~I-yPl~~V~IrKv 129 (176)
.. |-+-+.+||-+
T Consensus 140 ~wG~~clr~eIrDI 153 (301)
T KOG2620|consen 140 AWGYECLRYEIRDI 153 (301)
T ss_pred HhHHHHHHHhhhhc
Confidence 43 44445556554
No 14
>TIGR00279 L10e ribosomal protein L10.e. L10.e is distantly related to eubacterial ribosomal protein L16.
Probab=29.62 E-value=82 Score=26.43 Aligned_cols=64 Identities=6% Similarity=0.038 Sum_probs=45.6
Q ss_pred ceeeEeeeccc-c-chhhhhhhhccceee--------ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHHH
Q psy11013 12 MSCVVGALSFN-L-SSACRTIRKNWMKLM--------TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKK 81 (176)
Q Consensus 12 ~~a~T~F~g~~-t-~DklrSlVrKw~s~I--------~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRkk 81 (176)
.-||..|.|.. | ++|++..= .++| .+.|- +.+...+...-+ +.+.|+.+.|..
T Consensus 6 ~r~Yr~~~~~~Ytr~~y~~g~P---~~kI~~f~~G~~~~~fp-----~~~~L~a~E~~~---------I~~~qiEAaR~a 68 (172)
T TIGR00279 6 ARCYRYQKNRPYTRSEYIKGVP---GSKIRIYDMGNKSAEFP-----VCVHLVAKEPEQ---------IRHNALEAARIA 68 (172)
T ss_pred hhhhcccCCCCCchhhccCCCC---CCcEEEEECCCccCCCC-----EEEEEEECccce---------ecHHHHHHHHHH
Confidence 35888888887 4 66666543 2333 55677 777777766655 999999999999
Q ss_pred HHHHHHHHHhh
Q psy11013 82 MVEIIINEVVK 92 (176)
Q Consensus 82 m~eii~~e~~~ 92 (176)
|...|.+.+.+
T Consensus 69 ~~r~lkk~~g~ 79 (172)
T TIGR00279 69 ANKYMTRRAGR 79 (172)
T ss_pred HHHHHHhhcCc
Confidence 98888765543
No 15
>PF10163 EnY2: Transcription factor e(y)2; InterPro: IPR018783 Enhancer of yellow 2 (EnY2) is a small transcription factor which is combined in a complex with the TAFII40 protein []. This protein is conserved from protozoa to humans.; PDB: 4DHX_C 3FWC_P 3M99_C 3KIK_A 3KJL_C 3FWB_C 3MHS_B 3MHH_B.
Probab=28.61 E-value=1.1e+02 Score=22.09 Aligned_cols=40 Identities=20% Similarity=0.476 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHH-HHhhCCHHHHHHHh-------CCchHHHHHHHhcc
Q psy11013 77 QIRKKMVEIIIN-EVVKSDLKEVVNKL-------LPDSIAKEIEKKCQ 116 (176)
Q Consensus 77 ~IRkkm~eii~~-e~~~~~l~e~V~kl-------i~~~I~keIek~~k 116 (176)
.+|+...++|.+ -....++++++..+ +|+++-+|+....+
T Consensus 35 ~vr~~~re~i~~~g~~~~~~~~l~~~i~P~Ar~~VP~~vk~ell~~Ir 82 (86)
T PF10163_consen 35 EVRQLCREIIRERGIDNLTFEDLLEEITPKARAMVPDEVKKELLQRIR 82 (86)
T ss_dssp HHHHHHHHHHHHH-TTTSBHHHHHHHHHHHHHHCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 566666666666 45678899988665 67777777766543
No 16
>cd03400 Band_7_1 A subgroup of the band 7 domain of flotillin (reggie) like proteins. This subgroup contains proteins similar to stomatin, prohibitin, flotillin, HlfK/C and podicin. Many of these band 7 domain-containing proteins are lipid raft-associated. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Microdomains formed from flotillin proteins may in addition be dynamic units with their own regulatory functions. Flotillins have been implicated in signal transduction, vesicle trafficking, cytoskeleton rearrangement and are known to interact with a variety of proteins. Stomatin interacts with and regulates members of the degenerin/epithelia Na+ channel family in mechanosensory cells of Caenorhabditis elegans and vertebrate neurons and participates in trafficking of Glut1 glucose transporters. Prohibitin may act as a chaperone for the stabilization of mitochondrial proteins. Prokaryotic H
Probab=24.77 E-value=1.1e+02 Score=22.53 Aligned_cols=56 Identities=9% Similarity=0.150 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhccccccccceeEEEEEe
Q psy11013 75 VRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVFIRKVKV 131 (176)
Q Consensus 75 vr~IRkkm~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~IyPl~~V~IrKvKV 131 (176)
-+.|+..+...|.+.+++.+++|++.. =-+.|..+|...++.-..-.-+.|..+.+
T Consensus 52 ~~~i~~~~~~~lR~~~~~~~~~e~i~~-~R~~i~~~i~~~l~~~~~~~Gi~v~~v~i 107 (124)
T cd03400 52 RKIVRPTFRSLVREVTGRYTAEQIYST-KRKEIESAIKKELIEEFVGDGLILEEVLL 107 (124)
T ss_pred heeechhHHHHHHHHhcCCCHHHHhhh-hHHHHHHHHHHHHHHHhccCCeEEEEEEE
Confidence 356899999999999999999999841 12445555555554444334566666644
No 17
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=24.39 E-value=65 Score=23.34 Aligned_cols=19 Identities=26% Similarity=0.595 Sum_probs=16.1
Q ss_pred chHHHHHHHhccccccccc
Q psy11013 105 DSIAKEIEKKCQGIYPLHD 123 (176)
Q Consensus 105 ~~I~keIek~~k~IyPl~~ 123 (176)
..+..+|..+|++.||-..
T Consensus 16 ~~L~~eI~~~f~kLYP~~~ 34 (73)
T PF10407_consen 16 SQLKEEIEERFKKLYPNEP 34 (73)
T ss_pred HHHHHHHHHHHHHHCCCCC
Confidence 3578899999999999874
No 18
>smart00244 PHB prohibitin homologues. prohibitin homologues
Probab=24.33 E-value=3e+02 Score=20.38 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=50.0
Q ss_pred ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHHHHHHHHHHHHhhCCHHHHHHH---hCCchHHHHHHHhc
Q psy11013 39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNK---LLPDSIAKEIEKKC 115 (176)
Q Consensus 39 ~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRkkm~eii~~e~~~~~l~e~V~k---li~~~I~keIek~~ 115 (176)
+||.. +++-+.+.-+ -.+..+.-.......-..|+..+...+.+.++..++.+++.. -+...+..++.+.+
T Consensus 58 ~d~~~-----v~v~~~v~~r-v~d~~~~~~~~~~~~~~~l~~~i~~~ir~~i~~~~~~~i~~~~r~~i~~~v~~~l~~~~ 131 (160)
T smart00244 58 KDNVK-----VSVDAVVYYR-VLDPLKAVYRVLDADYAVIEQLAQTTLRSVIGKMTLDELLTDEREKISENIREELNERA 131 (160)
T ss_pred cCCcE-----EEEeEEEEEE-EccHHHHhhhcCCHHHHHHHHHHHHHHHHHHccccHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 78877 7666654332 122221111112222258999999999999999999999862 34555555555555
Q ss_pred cccccccceeEEEEEee
Q psy11013 116 QGIYPLHDVFIRKVKVL 132 (176)
Q Consensus 116 k~IyPl~~V~IrKvKVl 132 (176)
+. .-++|..+.|-
T Consensus 132 ~~----~Gi~i~~v~i~ 144 (160)
T smart00244 132 EA----WGIEVEDVEIK 144 (160)
T ss_pred Hh----CCCEEEEEEEE
Confidence 54 24566666543
No 19
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=23.94 E-value=92 Score=22.56 Aligned_cols=26 Identities=35% Similarity=0.436 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHhC
Q psy11013 78 IRKKMVEIIINEVVKSDLKEVVNKLL 103 (176)
Q Consensus 78 IRkkm~eii~~e~~~~~l~e~V~kli 103 (176)
+|+++..+|.+..+..|++|.+..+.
T Consensus 1 ~~k~i~~~l~ey~~~~D~~ea~~~l~ 26 (113)
T smart00544 1 LKKKIFLIIEEYLSSGDTDEAVHCLL 26 (113)
T ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 47889999999999999999987764
No 20
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=23.61 E-value=1.1e+02 Score=24.95 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=27.4
Q ss_pred eeEEEEEeecCCCCCCcceeeccchhhHHHHHHHHHHHHHH
Q psy11013 49 LNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINE 89 (176)
Q Consensus 49 LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRkkm~eii~~e 89 (176)
-|+|++-|..- .+.|++..+|..++.|+.-.
T Consensus 98 ~r~~VldF~Gd----------i~A~~v~~LReeisail~~a 128 (155)
T PF08496_consen 98 PRLFVLDFKGD----------IKASEVESLREEISAILSVA 128 (155)
T ss_pred CeEEEEecCCC----------ccHHHHHHHHHHHHHHHHhC
Confidence 79999999886 48899999999999998754
No 21
>KOG0930|consensus
Probab=23.17 E-value=35 Score=31.45 Aligned_cols=46 Identities=33% Similarity=0.473 Sum_probs=31.7
Q ss_pred HhccccccccceeEEEEEeeecchhhhhhhhhhccCC-----CCCcccCCCcceee
Q psy11013 113 KKCQGIYPLHDVFIRKVKVLKKPRFELSKLLELHGEG-----KGGATIDESGETVD 163 (176)
Q Consensus 113 k~~k~IyPl~~V~IrKvKVlk~Pk~d~~kl~e~h~e~-----~~~~~~~~~g~~v~ 163 (176)
|+-+.|.||.|+-||||.--++|-- .|++.-. ...-.++++|..|+
T Consensus 298 KEPrGIIpLeNlsir~VedP~kP~c-----fEly~ps~~gq~IKACKTe~DGRvVE 348 (395)
T KOG0930|consen 298 KEPRGIIPLENLSIREVEDPKKPNC-----FELYIPSNKGQVIKACKTEADGRVVE 348 (395)
T ss_pred CCCCcceeccccceeeccCCCCCCe-----EEEecCCCCcCeeeeecccCCceeEe
Confidence 4568999999999999999888872 2443321 12234566888776
No 22
>cd03405 Band_7_HflC Band_7_HflC: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfC (High frequency of lysogenization C). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflC is an integral membrane protein which may localize to the plasma membrane. HflC associates with another band 7 family member (HflK) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=21.76 E-value=3.6e+02 Score=22.09 Aligned_cols=84 Identities=11% Similarity=0.027 Sum_probs=49.4
Q ss_pred ecCceecCceeeEEEEEeecCCCCCCcceeecc---ch-h-hHHHHHHHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHH
Q psy11013 39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLF---KT-H-VRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEK 113 (176)
Q Consensus 39 ~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~---~S-Q-vr~IRkkm~eii~~e~~~~~l~e~V~kli~~~I~keIek 113 (176)
+||.. +.+-+...-+-. +. . ..|.+ .. . ...|+..+...+.+.++..+++|++..- .+.|+.+|..
T Consensus 57 ~D~~~-----v~v~~~v~yrI~-d~-~-~~~~~~~~~~~~~~~~i~~~~~~~lr~vi~~~~~~el~~~~-R~~i~~~i~~ 127 (242)
T cd03405 57 KDKKR-----LIVDAYAKWRIT-DP-L-RFYQAVGGEERAAETRLDQIVNSALRAEFGKRTLIELVSGE-RGELMEEIRR 127 (242)
T ss_pred cCCcE-----EEEEEEEEEEEc-CH-H-HHHHHhcChHHHHHHHHHHHHHHHHHHHHccCCHHHHHHhH-HHHHHHHHHH
Confidence 79988 776665433322 11 1 22221 11 1 2678999999999999999999998431 2344444444
Q ss_pred hccccccccceeEEEEEe
Q psy11013 114 KCQGIYPLHDVFIRKVKV 131 (176)
Q Consensus 114 ~~k~IyPl~~V~IrKvKV 131 (176)
..+...-=.-+.|..+.+
T Consensus 128 ~l~~~l~~~Gi~i~~v~i 145 (242)
T cd03405 128 AVAEEAKELGIEVVDVRI 145 (242)
T ss_pred HHHHHHHccCcEEEEEEE
Confidence 443333223566776665
No 23
>cd03404 Band_7_HflK Band_7_HflK: The band 7 domain of flotillin (reggie) like proteins. This group includes proteins similar to prokaryotic HlfK (High frequency of lysogenization K). Although many members of the band 7 family are lipid raft associated, prokaryote plasma membranes lack cholesterol and are unlikely to have lipid raft domains. Individual proteins of this band 7 domain family may cluster to form membrane microdomains which may in turn recruit multiprotein complexes. Escherichia coli HflK is an integral membrane protein which may localize to the plasma membrane. HflK associates with another band 7 family member (HflC) to form an HflKC complex. HflKC interacts with FtsH in a large complex termed the FtsH holo-enzyme. FtsH is an AAA ATP-dependent protease which exerts progressive proteolysis against membrane-embedded and soluble substrate proteins. HflKC can modulate the activity of FtsH. HflKC plays a role in the decision between lysogenic and lytic cycle growth during la
Probab=21.58 E-value=3.4e+02 Score=22.71 Aligned_cols=85 Identities=13% Similarity=0.081 Sum_probs=49.8
Q ss_pred ecCceecCceeeEEEEEeecCCCCCCcceeeccchhhHHHHHHHHHHHHHHHhhCCHHHHHHHhCCchHHHHHHHhcccc
Q psy11013 39 TTGYLHLSQSLNTFLLGDCGPRGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGI 118 (176)
Q Consensus 39 ~DGy~~~~~~LRvf~i~fT~kr~~q~kkt~Ya~~SQvr~IRkkm~eii~~e~~~~~l~e~V~kli~~~I~keIek~~k~I 118 (176)
+||.. +.+-+...-+-. ...+-.|-...--..|+..+...+.+.+++.+++|++..- .+.|..+|....+..
T Consensus 83 ~D~~~-----v~vd~~v~yrI~--d~~~~~~~~~~~~~~l~~~~~~~lr~~i~~~~~~eil~~~-R~~i~~~i~~~l~~~ 154 (266)
T cd03404 83 GDENI-----VDVEFAVQYRIS--DPYDYLFNVRDPEGTLRQAAESAMREVVGRSTLDDVLTEG-REEIAQDVRELLQAI 154 (266)
T ss_pred CCCCE-----EEEEEEEEEEEC--CHHHHHhhCCCHHHHHHHHHHHHHHHHHhhCcHHHHHHhC-HHHHHHHHHHHHHHH
Confidence 78876 665554433321 2223333333334689999999999999999999998541 234555555544443
Q ss_pred cccc--ceeEEEEEe
Q psy11013 119 YPLH--DVFIRKVKV 131 (176)
Q Consensus 119 yPl~--~V~IrKvKV 131 (176)
.... -|.|..|.+
T Consensus 155 ~~~~~~Gi~v~~v~i 169 (266)
T cd03404 155 LDAYKAGIEIVGVNL 169 (266)
T ss_pred hhccCCCeEEEEEEE
Confidence 2222 355555544
Done!