Query psy11013
Match_columns 176
No_of_seqs 109 out of 320
Neff 4.3
Searched_HMMs 13730
Date Fri Aug 16 15:58:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11013.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/11013hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 41.0 12 0.00085 26.1 3.6 28 75-102 3-30 (129)
2 d1wina_ d.43.2.1 (A:) Flotilli 36.1 56 0.004 22.2 6.7 52 76-131 66-119 (143)
3 d1pzqa_ a.34.3.1 (A:) Erythron 32.1 3.3 0.00024 26.4 -0.7 23 16-38 25-48 (60)
4 d2ok3a1 b.62.1.1 (A:1-159) Cyc 16.8 32 0.0023 24.0 2.1 17 119-135 142-158 (159)
5 d1ug3a1 a.118.1.14 (A:1235-142 16.5 67 0.0049 23.1 4.0 27 76-102 7-33 (193)
6 d1zkca1 b.62.1.1 (A:280-457) P 14.0 60 0.0044 22.9 3.1 25 119-143 142-166 (178)
7 d1gdta1 a.4.1.2 (A:141-183) ga 11.8 32 0.0024 20.3 0.7 19 133-151 2-20 (43)
8 d1wvec1 a.3.1.1 (C:602-675) p- 11.2 26 0.0019 21.5 0.1 31 5-35 15-46 (74)
9 d2zjrm1 b.34.5.6 (M:2-109) Rib 11.2 46 0.0034 23.0 1.5 30 115-144 76-105 (108)
10 d1a6qa1 a.159.1.1 (A:297-368) 9.6 44 0.0032 21.6 0.9 30 76-105 14-44 (72)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=40.95 E-value=12 Score=26.09 Aligned_cols=28 Identities=18% Similarity=0.303 Sum_probs=24.4
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHh
Q psy11013 75 VRQIRKKMVEIIINEVVKSDLKEVVNKL 102 (176)
Q Consensus 75 vr~IRkkm~eii~~e~~~~~l~e~V~kl 102 (176)
++.++|+|..+|.+.....|++|++.-+
T Consensus 3 v~~l~kk~~~ll~EY~~~~D~~Ea~~~l 30 (129)
T d2nsza1 3 VNHLVKEIDMLLKEYLLSGDISEAEHCL 30 (129)
T ss_dssp CCHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4578999999999999999999997543
No 2
>d1wina_ d.43.2.1 (A:) Flotillin-2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=36.15 E-value=56 Score=22.18 Aligned_cols=52 Identities=2% Similarity=0.049 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHH--hCCchHHHHHHHhccccccccceeEEEEEe
Q psy11013 76 RQIRKKMVEIIINEVVKSDLKEVVNK--LLPDSIAKEIEKKCQGIYPLHDVFIRKVKV 131 (176)
Q Consensus 76 r~IRkkm~eii~~e~~~~~l~e~V~k--li~~~I~keIek~~k~IyPl~~V~IrKvKV 131 (176)
..|+..+...+.+.+.+.+++++... -+.+.+.++|.+...+. -++|.-+.+
T Consensus 66 ~~i~~~~~~~lR~vig~~~l~el~~~R~~i~~~v~~~i~~~l~~~----Gi~v~~v~I 119 (143)
T d1wina_ 66 NVVLQTLEGHLRSILGTLTVEQIYQDRDQFAKLVREVAAPDVGRM----GIEILSFTI 119 (143)
T ss_dssp HHHHHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHHHHHHHTTT----TEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhccccHHHHHhCHHHHHHHHHHHHHHHHHHh----CeEEEEEEE
Confidence 45677777779999999999999864 44455555555555543 344555444
No 3
>d1pzqa_ a.34.3.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=32.09 E-value=3.3 Score=26.40 Aligned_cols=23 Identities=4% Similarity=0.176 Sum_probs=18.0
Q ss_pred Eeeeccc-cchhhhhhhhccceee
Q psy11013 16 VGALSFN-LSSACRTIRKNWMKLM 38 (176)
Q Consensus 16 T~F~g~~-t~DklrSlVrKw~s~I 38 (176)
..-.||. ---.|-+|.|||+|+-
T Consensus 25 ~~~~gh~dvg~rle~llrrw~srr 48 (60)
T d1pzqa_ 25 SAEDGHDDVGQRLESLLRRWNSRR 48 (60)
T ss_dssp TTSSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhcccHHHHHHHHHHHHHhccC
Confidence 3456777 6678999999999874
No 4
>d2ok3a1 b.62.1.1 (A:1-159) Cyclophilin-like protein PPIL3B {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.84 E-value=32 Score=23.95 Aligned_cols=17 Identities=35% Similarity=0.757 Sum_probs=15.7
Q ss_pred ccccceeEEEEEeeecc
Q psy11013 119 YPLHDVFIRKVKVLKKP 135 (176)
Q Consensus 119 yPl~~V~IrKvKVlk~P 135 (176)
-|+++|.|.++.||..|
T Consensus 142 ~P~~~i~I~~v~i~~~P 158 (159)
T d2ok3a1 142 RPLNDVHIKDITIHANP 158 (159)
T ss_dssp CBSSCCBEEEEEEECCS
T ss_pred CcCCCcEEEEEEEEeCC
Confidence 39999999999999888
No 5
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.48 E-value=67 Score=23.12 Aligned_cols=27 Identities=30% Similarity=0.350 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHh
Q psy11013 76 RQIRKKMVEIIINEVVKSDLKEVVNKL 102 (176)
Q Consensus 76 r~IRkkm~eii~~e~~~~~l~e~V~kl 102 (176)
..++|++..+|.+.....|++|++.-+
T Consensus 7 ee~~kk~~~il~Ey~~~~D~~Ea~~~l 33 (193)
T d1ug3a1 7 EELEKKSKAIIEEYLHLNDMKEAVQCV 33 (193)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 367899999999999999999998655
No 6
>d1zkca1 b.62.1.1 (A:280-457) Peptidyl-prolyl cis-trans isomerase-like 2, Cyclophilin-60, PPI domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.98 E-value=60 Score=22.94 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=20.3
Q ss_pred ccccceeEEEEEeeecchhhhhhhh
Q psy11013 119 YPLHDVFIRKVKVLKKPRFELSKLL 143 (176)
Q Consensus 119 yPl~~V~IrKvKVlk~Pk~d~~kl~ 143 (176)
-|+++|.|.++.||..|--|+...+
T Consensus 142 ~P~~~v~I~~~~Il~~pf~~~~~~~ 166 (178)
T d1zkca1 142 RPKEEIRIDATTVFVDPYEEADAQI 166 (178)
T ss_dssp CBSSCCEEEEEEEEECTTHHHHHHH
T ss_pred ccCCCeEEEEEEEEcCCcchhhHHH
Confidence 5999999999999999976654433
No 7
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=11.85 E-value=32 Score=20.33 Aligned_cols=19 Identities=21% Similarity=0.524 Sum_probs=15.9
Q ss_pred ecchhhhhhhhhhccCCCC
Q psy11013 133 KKPRFELSKLLELHGEGKG 151 (176)
Q Consensus 133 k~Pk~d~~kl~e~h~e~~~ 151 (176)
.+|.+|..+..+||.+|-+
T Consensus 2 Rk~~Id~~~V~~L~~~G~g 20 (43)
T d1gdta1 2 RKRKIDRDAVLNMWQQGLG 20 (43)
T ss_dssp SCCCSCHHHHHHHHHTTCC
T ss_pred CCCccCHHHHHHHHHcCCC
Confidence 3688999999999998853
No 8
>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase, cytochrome c subunit {Pseudomonas putida [TaxId: 303]}
Probab=11.20 E-value=26 Score=21.53 Aligned_cols=31 Identities=13% Similarity=0.089 Sum_probs=21.9
Q ss_pred cccccCCceeeEeeeccc-cchhhhhhhhccc
Q psy11013 5 PTCHSEKMSCVVGALSFN-LSSACRTIRKNWM 35 (176)
Q Consensus 5 ~~~~~~~~~a~T~F~g~~-t~DklrSlVrKw~ 35 (176)
+.|||.+.+..-.+.|-. +.++|...|+.+.
T Consensus 15 a~CHg~~g~~~p~l~~~~~~~~~i~~~i~~G~ 46 (74)
T d1wvec1 15 GHCHKPEVGVGPVLEGRGLPEAYIKDIVRNGF 46 (74)
T ss_dssp HHHHSTTTCSSCCCTTSCCCHHHHHHHHHHCB
T ss_pred HHHhcccCcchhhccccchhHHHHHHHHHhhc
Confidence 569998876555555656 7778888877654
No 9
>d2zjrm1 b.34.5.6 (M:2-109) Ribosomal protein L19 {Deinococcus radiodurans [TaxId: 1299]}
Probab=11.16 E-value=46 Score=22.97 Aligned_cols=30 Identities=13% Similarity=0.452 Sum_probs=23.5
Q ss_pred ccccccccceeEEEEEeeecchhhhhhhhh
Q psy11013 115 CQGIYPLHDVFIRKVKVLKKPRFELSKLLE 144 (176)
Q Consensus 115 ~k~IyPl~~V~IrKvKVlk~Pk~d~~kl~e 144 (176)
...+|||+.=.|-+++|++..+.--+||.-
T Consensus 76 VEr~fpl~SP~i~~IeV~r~~kvRRakLyY 105 (108)
T d2zjrm1 76 VERVFPFASPLVNQVTIVERGKVRRAKLYY 105 (108)
T ss_dssp EEEEEETTCTTEEEEEEEECCCCSSSCCGG
T ss_pred EEEEEEcCCCCccEEEEEEecceeeeeeee
Confidence 456899999999999999987755555543
No 10
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.57 E-value=44 Score=21.57 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHhhC-CHHHHHHHhCCc
Q psy11013 76 RQIRKKMVEIIINEVVKS-DLKEVVNKLLPD 105 (176)
Q Consensus 76 r~IRkkm~eii~~e~~~~-~l~e~V~kli~~ 105 (176)
..|.+++.+||.+..... +|..+++.|-.+
T Consensus 14 ~~Le~~v~eii~~~~~~~~dl~~Vm~~L~~e 44 (72)
T d1a6qa1 14 KYLECRVEEIIKKQGEGVPDLVHVMRTLASE 44 (72)
T ss_dssp HHHHHHHHHHCC----CCCCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcccCCchHHHHHHHHHhc
Confidence 467888889988877554 788777777543
Done!