RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy11013
         (176 letters)



>d1ewfa1 d.83.1.1 (A:1-217) Bactericidal permeability-increasing
           protein, BPI {Human (Homo sapiens) [TaxId: 9606]}
          Length = 217

 Score = 26.8 bits (59), Expect = 1.2
 Identities = 6/44 (13%), Positives = 15/44 (34%)

Query: 60  RGSSLKLVYQLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLL 103
             S +  + QLF   +    +  +   + E V + +   +    
Sbjct: 147 SKSKVGWLIQLFHKKIESALRNKMNSQVCEKVTNSVSSELQPYF 190


>d1htjf_ a.91.1.1 (F:) Pdz-RhoGEF RGS-like domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 182

 Score = 24.8 bits (54), Expect = 5.4
 Identities = 7/57 (12%), Positives = 24/57 (42%), Gaps = 2/57 (3%)

Query: 69  QLFKTHVRQIRKKMVEIIINEVVKSDLKEVVNKLLPDSIAKEIEKKCQGIYPLHDVF 125
           ++++    +  + + + I N  ++ +    V   +P+ +  EI+ + +       V 
Sbjct: 42  EVYQQASPKDSRSLGKDIWNIFLEKNAPLRVK--IPEMLQAEIDSRLRNSEDARGVL 96


>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 459

 Score = 24.7 bits (53), Expect = 8.9
 Identities = 11/70 (15%), Positives = 18/70 (25%), Gaps = 2/70 (2%)

Query: 101 KLLPDSIAKEIEKKCQGIY--PLHDVFIRKVKVLKKPRFELSKLLELHGEGKGGATIDES 158
             L   I+K I++    +    L D F   V              E+           + 
Sbjct: 63  GGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKI 122

Query: 159 GETVDRPEGY 168
           G     P  +
Sbjct: 123 GSKQVHPNNH 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.394 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 649,619
Number of extensions: 29469
Number of successful extensions: 123
Number of sequences better than 10.0: 1
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 10
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.2 bits)