BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11015
(360 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 140
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 141 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 172
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 173 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 211
Score = 65.1 bits (157), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 40 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 99
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 100 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 131
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 132 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 176
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 122 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 181
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 182 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 240
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 241 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 300
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 301 TDVVISTACHPTENIIASAAL 321
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 307
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 308 ACHPTENIIASAALENDKTIKLWKS 332
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 75.9 bits (185), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 142
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 143 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 174
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 175 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 213
Score = 65.1 bits (157), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 42 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 101
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 102 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 133
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 134 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 178
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 124 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 183
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 184 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 242
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 243 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 302
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 303 TDVVISTACHPTENIIASAAL 323
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 309
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 310 ACHPTENIIASAALENDKTIKLWKS 334
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 75.5 bits (184), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 135
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 136 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 167
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 168 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 206
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 35 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 94
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 95 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 126
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 127 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 171
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 117 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 176
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 177 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 235
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 236 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 295
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 296 TDVVISTACHPTENIIASAAL 316
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 302
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 303 ACHPTENIIASAALENDKTIKLWKS 327
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 122 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 153
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 81 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 112
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 282 TDVVISTACHPTENIIASAAL 302
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ ++++
Sbjct: 289 ACHPTENIIASAALENDKTIKLYKS 313
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 114
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 115 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 146
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 147 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 185
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 14 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 73
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 74 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 105
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAAGRTGGPIRAS 351
V ++ +++ S+D ++DV+TG L++L + + A G + S
Sbjct: 106 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVS 162
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 96 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 155
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 156 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 214
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 215 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 274
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 275 TDVVISTACHPTENIIASAAL 295
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 281
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 282 ACHPTENIIASAALENDKTIKLWKS 306
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 75.5 bits (184), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 125 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 156
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 84 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 115
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 160
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 285 TDVVISTACHPTENIIASAAL 305
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKS 316
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 122 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 153
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 81 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 112
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 282 TDVVISTACHPTENIIASAAL 302
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ ++++
Sbjct: 289 ACHPTENIIASAALENDKTIKLFKS 313
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 119 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 150
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 78 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 109
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 279 TDVVISTACHPTENIIASAAL 299
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 286 ACHPTENIIASAALENDKTIKLWKS 310
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 119
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 120 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 151
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 152 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 190
Score = 64.7 bits (156), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 19 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 78
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 79 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 110
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 111 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 155
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 101 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 160
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 161 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 219
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 220 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 279
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 280 TDVVISTACHPTENIIASAAL 300
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 286
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 287 ACHPTENIIASAALENDKTIKLWKS 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 125 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 156
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 84 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 115
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 160
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 285 TDVVISTACHPTENIIASAAL 305
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKS 316
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 124
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 125 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 156
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 157 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 195
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 24 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 83
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 84 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 115
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 116 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 160
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 106 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 165
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 166 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 224
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 225 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 284
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 285 TDVVISTACHPTENIIASAAL 305
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 291
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 292 ACHPTENIIASAALENDKTIKLWKS 316
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 118
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 119 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 150
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 151 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 189
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 77
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 78 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 109
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 110 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 100 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 159
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 160 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 218
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 219 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 278
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 279 TDVVISTACHPTENIIASAAL 299
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 285
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 286 ACHPTENIIASAALENDKTIKLWKS 310
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 123
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 124 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 155
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 156 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 194
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 23 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 82
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 83 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 114
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 115 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 159
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 105 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 164
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 165 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 223
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 224 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 283
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 284 TDVVISTACHPTENIIASAAL 304
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 290
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 291 ACHPTENIIASAALENDKTIKLWKS 315
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW ++ + L+T L HS+
Sbjct: 122 SNLIVSGSFDESVRIWDV------------------------KTGMCLKT----LPAHSD 153
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 81 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 112
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSA 157
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TG C+ HS V++V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKL 221
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 282 TDVVISTACHPTENIIASAAL 302
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 289 ACHPTENIIASAALENDKTIKLWKS 313
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 79/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW ++ + L+T L HS+
Sbjct: 122 SNLIVSGSFDESVRIWDV------------------------KTGMCLKT----LPAHSD 153
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 64.7 bits (156), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 81 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 112
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSA 157
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 84/201 (41%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TG C+ HS V++V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNR 162
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQTKEIVQKLQGH 281
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 282 TDVVISTACHPTENIIASAAL 302
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNMVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 289 ACHPTENIIASAALENDKTIKLWKS 313
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 75.1 bits (183), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 117
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 118 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 149
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 150 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 188
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L S+SAD+ +++W GK SGH ++ V + +
Sbjct: 17 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 76
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 77 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 108
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 109 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 153
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 99 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 158
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 159 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 217
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 218 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 277
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 278 TDVVISTACHPTENIIASAAL 298
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 284
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 285 ACHPTENIIASAALENDKTIKLWKS 309
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 74.7 bits (182), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ SGH+ G+ DVA +L SAS D+T+++W +GKC+ GHS V F P
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQ 121
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSN 293
+L++S S D+SV IW V +CL K L HS+
Sbjct: 122 SNLIVSGSFDESVRIWD-VKTGKCL---------------------------KTLPAHSD 153
Query: 294 VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
V A + DG ++++S+D + ++D +G L++L +
Sbjct: 154 PVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLID 192
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 28/165 (16%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ +GH V V P L ++SAD+ +++W GK SGH ++ V + +
Sbjct: 21 TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDS 80
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L++SAS DK++ IW V + +CL K L GHSN
Sbjct: 81 NLLVSASDDKTLKIWD-VSSGKCL---------------------------KTLKGHSNY 112
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
V ++ +++ S+D ++DV+TG L++L + + A
Sbjct: 113 VFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 157
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 85/201 (42%), Gaps = 20/201 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ GH + V+ P ++ S S D +VR+W +TGKC+ HS V++V F
Sbjct: 103 LKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR 162
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL--VXXXXXXXXXXXXKEPDESSITLRT------- 283
+ L++S+S D IW +CL + P+ I T
Sbjct: 163 DGSLIVSSSYDGLCRIWDTASG-QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKL 221
Query: 284 -------PVKELLGHSN---VVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
+K GH N + A ++ G+ +++ S D + +++++T I+Q L
Sbjct: 222 WDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGH 281
Query: 334 GEAIRAAAGRTGGPIRASPLL 354
+ + + A I AS L
Sbjct: 282 TDVVISTACHPTENIIASAAL 302
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 50/85 (58%), Gaps = 7/85 (8%)
Query: 173 IRSFSGHRDGVW----DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+++++GH++ + + +V G+ ++ S S D V +W+ QT + V + GH+ V S
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIV-SGSEDNLVYIWNLQTKEIVQKLQGHTDVVIST 288
Query: 229 RFLPNKDLVLSAS--GDKSVHIWQA 251
P ++++ SA+ DK++ +W++
Sbjct: 289 ACHPTENIIASAALENDKTIKLWKS 313
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 72.8 bits (177), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/183 (29%), Positives = 88/183 (48%), Gaps = 18/183 (9%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 337 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 395
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL-VXXXXXXXXXXXXKEPDESSITLRTP------- 284
+ + SAS DK+V +W N + L PD+ +I +
Sbjct: 396 DGQTIASASDDKTVKLWNR--NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLW 453
Query: 285 ------VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIR 338
++ L GHS+ V + DG+ + +AS D+ L++ G +LQ+LT ++R
Sbjct: 454 NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVR 512
Query: 339 AAA 341
A
Sbjct: 513 GVA 515
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 14/181 (7%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 50 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 108
Query: 233 NKDLVLSASGDKSVHIW-------QAVINWECLVXXXXXX-XXXXXXKEPDESSITLRTP 284
+ + SAS DK+V +W Q + V D+ ++ L
Sbjct: 109 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR 168
Query: 285 VKELL----GHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAA 340
+LL GHS+ V + DG+ + +AS D+ L++ G +LQ+LT ++R
Sbjct: 169 NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV 227
Query: 341 A 341
A
Sbjct: 228 A 228
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 84/179 (46%), Gaps = 31/179 (17%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 132 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 190
Query: 233 NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHS 292
+ + SAS DK+V +W N + L + L GHS
Sbjct: 191 DGQTIASASDDKTVKLWNR--NGQLL---------------------------QTLTGHS 221
Query: 293 NVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAAGRTGGPIRAS 351
+ V + DG+ + +AS D+ L++ G +LQ+LT ++ A R G AS
Sbjct: 222 SSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVNGVAFRPDGQTIAS 279
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 477
Query: 233 NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHS 292
+ + SAS DK+V +W N + L + L GHS
Sbjct: 478 DGQTIASASDDKTVKLWNR--NGQLL---------------------------QTLTGHS 508
Query: 293 NVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAA 341
+ V + DG+ + +AS D+ L++ G +LQ+LT ++ A
Sbjct: 509 SSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 556
Score = 68.2 bits (165), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 31/169 (18%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 173 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 231
Query: 233 NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHS 292
+ + SAS DK+V +W N + L + L GHS
Sbjct: 232 DGQTIASASDDKTVKLWNR--NGQLL---------------------------QTLTGHS 262
Query: 293 NVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAA 341
+ V + DG+ + +AS D+ L++ G +LQ+LT ++ A
Sbjct: 263 SSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 310
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 53/181 (29%), Positives = 86/181 (47%), Gaps = 14/181 (7%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ +GH VW VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 296 LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQHLQTLTGHSSSVWGVAFSP 354
Query: 233 NKDLVLSASGDKSVHIW-------QAVINWECLVXXXXXX-XXXXXXKEPDESSITLRTP 284
+ + SAS DK+V +W Q + V D+ ++ L
Sbjct: 355 DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR 414
Query: 285 VKELL----GHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAA 340
+LL GHS+ V + D + + +AS D+ L++ G +LQ+LT ++R
Sbjct: 415 NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGV 473
Query: 341 A 341
A
Sbjct: 474 A 474
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 51/169 (30%), Positives = 82/169 (48%), Gaps = 31/169 (18%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ +GH V VA RP + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 255 LQTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP 313
Query: 233 NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHS 292
+ + SAS DK+V +W + + L+T L GHS
Sbjct: 314 DGQTIASASDDKTVKLW-------------------------NRNGQHLQT----LTGHS 344
Query: 293 NVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAA 341
+ V + DG+ + +AS D+ L++ G +LQ+LT ++R A
Sbjct: 345 SSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVA 392
Score = 57.8 bits (138), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 14/175 (8%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 238
H V VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P+ +
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 239 SASGDKSVHIW-------QAVINWECLVXXXXXX-XXXXXXKEPDESSITLRTPVKELL- 289
SAS DK+V +W Q + V D+ ++ L +LL
Sbjct: 74 SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ 133
Query: 290 ---GHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAA 341
GHS+ V + DG+ + +AS D+ L++ G +LQ+LT ++ A
Sbjct: 134 TLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVA 187
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 30/148 (20%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ +GH V VA P + SAS D+TV+LW+ + G+ + +GHS SV V F P
Sbjct: 460 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSP 518
Query: 233 NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHS 292
+ + SAS DK+V +W N + L + L GHS
Sbjct: 519 DGQTIASASDDKTVKLWNR--NGQLL---------------------------QTLTGHS 549
Query: 293 NVVIAADWLSDGEQVITASWDRVANLFD 320
+ V + DG+ + +AS D+ L++
Sbjct: 550 SSVWGVAFSPDGQTIASASSDKTVKLWN 577
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 87/208 (41%), Gaps = 36/208 (17%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
R+ GH D V D++ +L S SAD T++LW Q +C+ GH +V+SV +PN
Sbjct: 144 RTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSI--------TLRTPV 285
D ++SAS DK++ +W+ + C+ + + ++ T+R V
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 286 -------KELLGHSNVVIAADWLSD--------------------GEQVITASWDRVANL 318
EL H +VV W + G +++ S D+ +
Sbjct: 263 VATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM 322
Query: 319 FDVETGTILQSLTEPGEAIRAAAGRTGG 346
+DV TG L +L +R +GG
Sbjct: 323 WDVSTGMCLMTLVGHDNWVRGVLFHSGG 350
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 79/177 (44%), Gaps = 28/177 (15%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ SGHR V V P V+ SAS D T+++W +TG GH+ SV + F +
Sbjct: 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 162
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
L+ S S D ++ +W +EC ++ + GH +
Sbjct: 163 KLLASCSADMTIKLWD-FQGFEC---------------------------IRTMHGHDHN 194
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAAGRTGGPIRAS 351
V + + +G+ +++AS D+ +++V+TG +++ T E +R G + AS
Sbjct: 195 VSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIAS 251
Score = 51.2 bits (121), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 189 RPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHI 248
+PG P L S S D+T+++W TG C++ GH V V F +LS + DK++ +
Sbjct: 306 KPG-PFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV 364
Query: 249 W 249
W
Sbjct: 365 W 365
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 92/238 (38%), Gaps = 71/238 (29%)
Query: 121 MECVTNMNKNFNKQKVLASNP------SAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIR 174
EC+ M+ + + ++ P SA + KT +VQT Y ++
Sbjct: 182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG-------------YCVK 228
Query: 175 SFSGHRDGVWDVAVRPGQ--PVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+F+GHR+ W VRP Q ++ S S D+TVR+W T +C + H V + + P
Sbjct: 229 TFTGHRE--WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 286
Query: 233 NKD--------------------LVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXK 272
+LS S DK++ +W V CL+
Sbjct: 287 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWD-VSTGMCLMT------------ 333
Query: 273 EPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSL 330
L+GH N V + S G+ +++ + D+ ++D + +++L
Sbjct: 334 ---------------LVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTL 376
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 37/74 (50%)
Query: 178 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLV 237
GH + V V G + S + D+T+R+W + +C+ + H V S+ F V
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 395
Query: 238 LSASGDKSVHIWQA 251
++ S D++V +W+
Sbjct: 396 VTGSVDQTVKVWEC 409
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 78/172 (45%), Gaps = 20/172 (11%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+R+ GH GVW +R ++ S S DRT+++W+ +TG+C+ GH+ +V +
Sbjct: 152 LRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE 209
Query: 233 NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSIT------------ 280
+ V+S S D ++ +W +CL + ++
Sbjct: 210 KR--VVSGSRDATLRVWDIETG-QCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP 266
Query: 281 -LRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLT 331
T + L GH+N V + + DG V++ S D ++DVETG + +LT
Sbjct: 267 ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Score = 54.7 bits (130), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 77/170 (45%), Gaps = 19/170 (11%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
+ GH D V G ++ S S D T+++WS TGKC+ GH+G V S + N
Sbjct: 112 KVLKGHDDHVITCLQFCGNRIV-SGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN 170
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSI------TLRT---- 283
+++S S D+++ +W A EC+ ++ + TLR
Sbjct: 171 --IIISGSTDRTLKVWNAETG-ECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE 227
Query: 284 ---PVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSL 330
+ L+GH V + DG +V++ ++D + ++D ET T L +L
Sbjct: 228 TGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTL 275
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 85/193 (44%), Gaps = 42/193 (21%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+ + GH + V+ + V S S D ++R+W +TG C+ +GH + +
Sbjct: 272 LHTLQGHTNRVYSLQFDGIHVV--SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD 329
Query: 233 NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHS 292
N +++S + D +V IW + +CL TL+ P K H
Sbjct: 330 N--ILVSGNADSTVKIWD-IKTGQCLQ--------------------TLQGPNK----HQ 362
Query: 293 NVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAAGRTGG---PIR 349
+ V + + VIT+S D L+D++TG +++L + +G +GG IR
Sbjct: 363 SAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNL------VTLESGGSGGVVWRIR 414
Query: 350 AS--PLLLAIRSK 360
AS L+ A+ S+
Sbjct: 415 ASNTKLVCAVGSR 427
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 28/151 (18%)
Query: 186 VAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKS 245
V P L + + DR +R+W + K V+ GH + S+ + P+ D ++S SGD++
Sbjct: 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRT 188
Query: 246 VHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGE 305
V IW + S+TL V A DG+
Sbjct: 189 VRIWDL---------------------RTGQCSLTLSI-------EDGVTTVAVSPGDGK 220
Query: 306 QVITASWDRVANLFDVETGTILQSLTEPGEA 336
+ S DR ++D ETG +++ L E+
Sbjct: 221 YIAAGSLDRAVRVWDSETGFLVERLDSENES 251
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 45/88 (51%), Gaps = 14/88 (15%)
Query: 175 SFSGHRDGVWDVA-VRPGQPVLGSASADRTVRLWSTQ------------TGKCVLQYSGH 221
S +GH+D V+ V R GQ V+ S S DR+V+LW+ Q +G C + Y GH
Sbjct: 251 SGTGHKDSVYSVVFTRDGQSVV-SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGH 309
Query: 222 SGSVNSVRFLPNKDLVLSASGDKSVHIW 249
V SV N + +LS S D+ V W
Sbjct: 310 KDFVLSVATTQNDEYILSGSKDRGVLFW 337
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 23/146 (15%)
Query: 178 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLV 237
GH ++ + P L S S DRTVR+W +TG+C L S G V +V P
Sbjct: 163 GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKY 221
Query: 238 LSA-SGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVI 296
++A S D++V +W + + LV L + + GH + V
Sbjct: 222 IAAGSLDRAVRVWDSETGF--LVER-------------------LDSENESGTGHKDSVY 260
Query: 297 AADWLSDGEQVITASWDRVANLFDVE 322
+ + DG+ V++ S DR L++++
Sbjct: 261 SVVFTRDGQSVVSGSLDRSVKLWNLQ 286
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 6/82 (7%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL--- 231
++ GH+D V VA + S S DR V W ++G +L GH SV SV
Sbjct: 305 TYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGS 364
Query: 232 ---PNKDLVLSASGDKSVHIWQ 250
P ++ + SGD IW+
Sbjct: 365 SLGPEYNVFATGSGDCKARIWK 386
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 29/135 (21%)
Query: 225 VNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTP 284
+ SV F P+ + + + D+ + IW I R
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWD----------------------------IENRKI 157
Query: 285 VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLT-EPGEAIRAAAGR 343
V L GH + + D+ G+++++ S DR ++D+ TG +L+ E G A +
Sbjct: 158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG 217
Query: 344 TGGPIRASPLLLAIR 358
G I A L A+R
Sbjct: 218 DGKYIAAGSLDRAVR 232
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 176 FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKD 235
SGH GVW + G +L S S DRTVR+W + G C + GH+ +V + + K+
Sbjct: 158 LSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 236 L--VLSASGDKSVHIWQ 250
+ +++ S D ++H+W+
Sbjct: 217 IKYIVTGSRDNTLHVWK 233
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 4/84 (4%)
Query: 168 LSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNS 227
+ C I SGH D ++ + SAS D T+R+W + G+ + GH+ V
Sbjct: 300 MKCLYI--LSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGL 357
Query: 228 VRFLPNKDLVLSASGDKSVHIWQA 251
+R L +K LV SA+ D S+ W A
Sbjct: 358 LR-LSDKFLV-SAAADGSIRGWDA 379
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+R+ SGH + ++ S S D T+ +W KC+ SGH+ + S +
Sbjct: 273 VRTVSGHGN------------IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH 320
Query: 233 NKDLVLSASGDKSVHIW 249
+ +SAS D ++ IW
Sbjct: 321 ERKRCISASMDTTIRIW 337
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.5 bits (132), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 65/138 (47%), Gaps = 8/138 (5%)
Query: 119 NDMECVTNMNKNFNKQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRS-FS 177
+D ECVT + + N+ K +A PS L T ++ K V ++ Y+ S +
Sbjct: 93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSR-----DKSVWVWEVDEEDEYECVSVLN 147
Query: 178 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK--CVLQYSGHSGSVNSVRFLPNKD 235
H V V P Q +L SAS D TV+L+ + C GH +V S+ F P+
Sbjct: 148 SHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQ 207
Query: 236 LVLSASGDKSVHIWQAVI 253
+ S S D++V IW+ +
Sbjct: 208 RLASCSDDRTVRIWRQYL 225
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 65/148 (43%), Gaps = 21/148 (14%)
Query: 119 NDMECVTNMNKNFNKQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSG 178
++ ECV+ +N + K + +PS + L + + T K+ + + C + G
Sbjct: 138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASY--DDTVKLYREEEDDWVCC---ATLEG 192
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLW---------------STQTGKCVLQYSG-HS 222
H VW +A P L S S DRTVR+W S + KC+ SG HS
Sbjct: 193 HESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHS 252
Query: 223 GSVNSVRFLPNKDLVLSASGDKSVHIWQ 250
++ + + + +A GD ++ ++Q
Sbjct: 253 RTIYDIAWCQLTGALATACGDDAIRVFQ 280
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 56/119 (47%), Gaps = 12/119 (10%)
Query: 137 LASNPSAQKLKTTN---KLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQP 193
LA NP+ L + ++++ ++ S S+LS GH+ V VA P
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-------EGHQRTVRKVAWSPCGN 74
Query: 194 VLGSASADRTVRLWSTQTG--KCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQ 250
L SAS D T +W +CV GH V SV + P+ +L+ + S DKSV +W+
Sbjct: 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWE 133
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 56/143 (39%), Gaps = 29/143 (20%)
Query: 183 VWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ---YSGHSGSVNSVRFLPNKDLVLS 239
W +A P +L S DR +R+W T+ + + GH +V V + P + + S
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLAS 78
Query: 240 ASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVIAAD 299
AS D + IW+ K D+ V L GH N V +
Sbjct: 79 ASFDATTCIWK---------------------KNQDDFEC-----VTTLEGHENEVKSVA 112
Query: 300 WLSDGEQVITASWDRVANLFDVE 322
W G + T S D+ +++V+
Sbjct: 113 WAPSGNLLATCSRDKSVWVWEVD 135
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 55.1 bits (131), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 3/77 (3%)
Query: 176 FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKD 235
SGH GVW + G +L S S DRTVR+W + G C + GH+ +V + + K+
Sbjct: 158 LSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKN 216
Query: 236 L--VLSASGDKSVHIWQ 250
+ +++ S D ++H+W+
Sbjct: 217 IKYIVTGSRDNTLHVWK 233
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 176 FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKD 235
SGH D ++ + SAS D T+R+W + G+ GH+ V +R L +K
Sbjct: 306 LSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLLR-LSDKF 364
Query: 236 LVLSASGDKSVHIWQA 251
LV SA+ D S+ W A
Sbjct: 365 LV-SAAADGSIRGWDA 379
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+R+ SGH + ++ S S D T+ +W KC+ SGH+ + S +
Sbjct: 273 VRTVSGHGN------------IVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDH 320
Query: 233 NKDLVLSASGDKSVHIW 249
+ +SAS D ++ IW
Sbjct: 321 ERKRCISASXDTTIRIW 337
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL 258
+++S S DK++ +W I +CL
Sbjct: 118 KASMIISGSRDKTIKVW--TIKGQCL 141
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 24/110 (21%)
Query: 220 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESS 278
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKL---------------TGDDQK 53
Query: 279 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 328
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q
Sbjct: 54 FGV--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ 101
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 175 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLW-----STQTGKCVLQYSGHSGSVNSV 228
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 229 RFLPNKDLVLSASGDKSVHIW 249
+ LSAS DK++ +W
Sbjct: 72 TLTADGAYALSASWDKTLRLW 92
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 155 QTSKIVSSFKTSLLSCYKIR-----SFSGHRDGVWDVAVRPGQPV------LGSASADRT 203
+ S I+S + + + I+ + GH D V V V P + + SA D+
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 204 VRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
V+ W+ + + GH+ ++N++ P+ L+ SA D + +W
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 168 LSCYKIRS-FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVN 226
L+ ++I + F GH + + P ++ SA D + LW+ K + S V
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVF 241
Query: 227 SVRFLPNKDLVLSAS 241
S+ F PN+ + +A+
Sbjct: 242 SLAFSPNRYWLAAAT 256
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL 258
+++S S DK++ +W I +CL
Sbjct: 118 KASMIISGSRDKTIKVW--TIKGQCL 141
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 24/110 (21%)
Query: 220 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESS 278
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKL---------------TGDDQK 53
Query: 279 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 328
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q
Sbjct: 54 FGV--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ 101
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 175 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLW-----STQTGKCVLQYSGHSGSVNSV 228
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 229 RFLPNKDLVLSASGDKSVHIW 249
+ LSAS DK++ +W
Sbjct: 72 TLTADGAYALSASWDKTLRLW 92
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 155 QTSKIVSSFKTSLLSCYKIR-----SFSGHRDGVWDVAVRPGQPV------LGSASADRT 203
+ S I+S + + + I+ + GH D V V V P + + SA D+
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 204 VRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
V+ W+ + + GH+ ++N++ P+ L+ SA D + +W
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 28.5 bits (62), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 168 LSCYKIRS-FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVN 226
L+ ++I + F GH + + P ++ SA D + LW+ K + S V
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVF 241
Query: 227 SVRFLPNKDLVLSASG 242
S+ F PN+ + +A+
Sbjct: 242 SLAFSPNRYWLAAATA 257
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL 258
+++S S DK++ +W I +CL
Sbjct: 118 KASMIISGSRDKTIKVW--TIKGQCL 141
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 24/110 (21%)
Query: 220 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESS 278
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKL---------------TGDDQK 53
Query: 279 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 328
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q
Sbjct: 54 FGV--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ 101
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 175 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLW-----STQTGKCVLQYSGHSGSVNSV 228
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 229 RFLPNKDLVLSASGDKSVHIW 249
+ LSAS DK++ +W
Sbjct: 72 TLTADGAYALSASWDKTLRLW 92
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 155 QTSKIVSSFKTSLLSCYKIR-----SFSGHRDGVWDVAVRPGQPV------LGSASADRT 203
+ S I+S + + + I+ + GH D V V V P + + SA D+
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 204 VRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
V+ W+ + + GH+ ++N++ P+ L+ SA D + +W
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 168 LSCYKIRS-FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVN 226
L+ ++I + F GH + + P ++ SA D + LW+ K + S V
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVF 241
Query: 227 SVRFLPNKDLVLSAS 241
S+ F PN+ + +A+
Sbjct: 242 SLAFSPNRYWLAAAT 256
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 52 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 111
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL 258
+++S S DK++ +W I +CL
Sbjct: 112 KASMIISGSRDKTIKVW--TIKGQCL 135
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 24/110 (21%)
Query: 220 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESS 278
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 9 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKL---------------TGDDQK 47
Query: 279 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 328
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q
Sbjct: 48 FGV--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ 95
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 175 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLW-----STQTGKCVLQYSGHSGSVNSV 228
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 6 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 65
Query: 229 RFLPNKDLVLSASGDKSVHIW 249
+ LSAS DK++ +W
Sbjct: 66 TLTADGAYALSASWDKTLRLW 86
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 155 QTSKIVSSFKTSLLSCYKIR-----SFSGHRDGVWDVAVRPGQPV------LGSASADRT 203
+ S I+S + + + I+ + GH D V V V P + + SA D+
Sbjct: 112 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 171
Query: 204 VRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
V+ W+ + + GH+ ++N++ P+ L+ SA D + +W
Sbjct: 172 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 217
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 168 LSCYKIRS-FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVN 226
L+ ++I + F GH + + P ++ SA D + LW+ K + S V
Sbjct: 177 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVF 235
Query: 227 SVRFLPNKDLVLSAS 241
S+ F PN+ + +A+
Sbjct: 236 SLAFSPNRYWLAAAT 250
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDK 117
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL 258
+++S S DK++ +W I +CL
Sbjct: 118 KASMIISGSRDKTIKVW--TIKGQCL 141
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 24/110 (21%)
Query: 220 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESS 278
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKL---------------TGDDQK 53
Query: 279 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 328
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q
Sbjct: 54 FGV--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ 101
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 175 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLW-----STQTGKCVLQYSGHSGSVNSV 228
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 229 RFLPNKDLVLSASGDKSVHIW 249
+ LSAS DK++ +W
Sbjct: 72 TLTADGAYALSASWDKTLRLW 92
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 155 QTSKIVSSFKTSLLSCYKIR-----SFSGHRDGVWDVAVRPGQPV------LGSASADRT 203
+ S I+S + + + I+ + GH D V V V P + + SA D+
Sbjct: 118 KASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKM 177
Query: 204 VRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
V+ W+ + + GH+ ++N++ P+ L+ SA D + +W
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLW 223
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Query: 168 LSCYKIRS-FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVN 226
L+ ++I + F GH + + P ++ SA D + LW+ K + S V
Sbjct: 183 LNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD-EVF 241
Query: 227 SVRFLPNKDLVLSAS 241
S+ F PN+ + +A+
Sbjct: 242 SLAFSPNRYWLAAAT 256
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 35/183 (19%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
R GH V DVA+ SAS D ++RLW+ Q G+C ++ GH+ V SV F P+
Sbjct: 61 RRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPD 120
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTP--------- 284
++S D ++ +W + EC+ D S +P
Sbjct: 121 NRQIVSGGRDNALRVWN--VKGECM-------HTLSRGAHTDWVSCVRFSPSLDAPVIVS 171
Query: 285 -----------------VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTIL 327
V +L GH+N V + DG ++ D VA L+D+ G L
Sbjct: 172 GGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEAL 231
Query: 328 QSL 330
+
Sbjct: 232 SEM 234
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPG--QPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNS 227
C S H D V V P PV+ S D V++W TG+ V GH+ V S
Sbjct: 142 CMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTS 201
Query: 228 VRFLPNKDLVLSASGDKSVHIW 249
V P+ L S+ D +W
Sbjct: 202 VTVSPDGSLCASSDKDGVARLW 223
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+ GH + V V V P + S+ D RLW G+ + + + +N + F P
Sbjct: 189 VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKGEALSEMAA-GAPINQICFSP 247
Query: 233 NKDLVLSASGDKSVHI 248
N+ + +A+ +K + I
Sbjct: 248 NRYWMCAAT-EKGIRI 262
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+RSF GH V D + SAS D+T+RLW TG+ ++ GH V SV
Sbjct: 58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDK 117
Query: 233 NKDLVLSASGDKSVHIWQAVINWECL 258
++S S DK++ +W I +CL
Sbjct: 118 KASXIISGSRDKTIKVW--TIKGQCL 141
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 24/110 (21%)
Query: 220 GHSGSVNSVRFLPNK-DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESS 278
GH+G V S+ + +L+LSAS DK++ I+W+ D+
Sbjct: 15 GHNGWVTSLATSAGQPNLLLSASRDKTL------ISWKL---------------TGDDQK 53
Query: 279 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 328
+ PV+ GHS++V +DG ++ASWD+ L+DV TG Q
Sbjct: 54 FGV--PVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQ 101
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 11/106 (10%)
Query: 155 QTSKIVSSFKTSLLSCYKIR-----SFSGHRDGVWDVAVRPGQPV------LGSASADRT 203
+ S I+S + + + I+ + GH D V V V P + + SA D+
Sbjct: 118 KASXIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKX 177
Query: 204 VRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
V+ W+ + + GH+ ++N++ P+ L+ SA D + +W
Sbjct: 178 VKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLW 223
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 175 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLW-----STQTGKCVLQYSGHSGSVNSV 228
+ GH V +A GQP +L SAS D+T+ W + G V + GHS V
Sbjct: 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDC 71
Query: 229 RFLPNKDLVLSASGDKSVHIW 249
+ LSAS DK++ +W
Sbjct: 72 TLTADGAYALSASWDKTLRLW 92
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 42/76 (55%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
++ +GH V D+A+ S+S D+T+RLW +TG ++ GH V SV F P+
Sbjct: 70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 234 KDLVLSASGDKSVHIW 249
+LSA ++ + +W
Sbjct: 130 NRQILSAGAEREIKLW 145
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVL---QYSGHSGSVNSVRF 230
+ F GH+ V+ VA P + SA A+R ++LW+ G+C + HS V+ VR+
Sbjct: 112 KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI-LGECKFSSAEKENHSDWVSCVRY 170
Query: 231 LP 232
P
Sbjct: 171 SP 172
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 188 VRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVH 247
V+P P S D +++W+T + + H +VN + PN + + DK +
Sbjct: 180 VQPFAPYFASVGWDGRLKVWNTNF-QIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
Query: 248 IW 249
IW
Sbjct: 239 IW 240
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 41/157 (26%)
Query: 178 GHRDGVWDVAVRPGQ------PVLGSASADRTVRLW----STQTGKCVLQY---SGHSGS 224
GH D V + Q PVL S S D+TV +W Q G + + +GH+
Sbjct: 19 GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF 78
Query: 225 VNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTP 284
V+ + +S+S DK++ +W + T
Sbjct: 79 VSDLALSQENCFAISSSWDKTLRLWD----------------------------LRTGTT 110
Query: 285 VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDV 321
K +GH + V + + D Q+++A +R L+++
Sbjct: 111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 21/95 (22%)
Query: 236 LVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVV 295
+++S S DK+V IW+ +E + P K L GH++ V
Sbjct: 41 VLISGSRDKTVMIWKLY---------------------EEEQNGYFGIPHKALTGHNHFV 79
Query: 296 IAADWLSDGEQVITASWDRVANLFDVETGTILQSL 330
+ I++SWD+ L+D+ TGT +
Sbjct: 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRF 114
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 16/134 (11%)
Query: 194 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVI 253
+L + S+D ++LW +C GH+ SVN RF P+ L+ S S D ++ +W A
Sbjct: 721 LLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDAT- 779
Query: 254 NWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWD 313
+ + L P +++ +V W +DG +++ A+ +
Sbjct: 780 -----------SANERKSINVKQFFLNLEDPQEDM---EVIVKCCSWSADGARIMVAAKN 825
Query: 314 RVANLFDVETGTIL 327
++ LFD+ T +L
Sbjct: 826 KIF-LFDIHTSGLL 838
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 72/179 (40%), Gaps = 19/179 (10%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 238
H+ VW + + L S+S D +++W+ Q KC+ GH +V R L N L L
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCIF-LRGHQETVKDFRLLKNSRL-L 1065
Query: 239 SASGDKSVHIWQAVI-----NWEC-----LVXXXXXXXXXXXXKEPDES----SITLRTP 284
S S D +V +W + ++ C L D++ S L P
Sbjct: 1066 SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLP 1125
Query: 285 VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ---SLTEPGEAIRAA 340
+ EL GH+ V + + D + T + +++V G +L L+E G A
Sbjct: 1126 LHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGG 1184
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 238
H D V+ + S AD+T++++ +TG+ +L+ H V F + +
Sbjct: 620 HTDAVYHACFSEDGQRIASCGADKTLQVFKAETGEKLLEIKAHEDEVLCCAFSTDDRFIA 679
Query: 239 SASGDKSVHIWQAV 252
+ S DK V IW ++
Sbjct: 680 TCSVDKKVKIWNSM 693
Score = 36.2 bits (82), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 177 SGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDL 236
+GH + P + A + V LW+T + V GH V+ V F P+
Sbjct: 843 TGHHSTIQYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPDGSS 902
Query: 237 VLSASGDKSVHIWQ 250
L++S D+++ +W+
Sbjct: 903 FLTSSDDQTIRLWE 916
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL 231
K + F H+ V + S SAD+T ++WS + + GH+G V F
Sbjct: 1083 KEKDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFS 1142
Query: 232 PNKDLVLSASGDKSVHIW 249
+ L+ + + + IW
Sbjct: 1143 VDSTLLATGDDNGEIRIW 1160
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 190 PGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
P +P + +AS D T+++W QT CV GH +V+ F P +++S S D ++ IW
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 250 QA 251
+
Sbjct: 256 NS 257
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRF 230
K+ F H D + +AV P +P + S S D TV+LW+ + + Q + GH V V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 231 LPNKDLVLSASG--DKSVHIW 249
P KD ASG D++V +W
Sbjct: 149 NP-KDPSTFASGCLDRTVKVW 168
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 174 RSFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWS-TQTGKCVLQYSGHSGSVNSVRF- 230
++F GH V VA P P S DRTV++WS Q+ +G VN V +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 231 -LPNKDLVLSASGDKSVHIW 249
LP+K +++AS D ++ IW
Sbjct: 194 PLPDKPYMITASDDLTIKIW 213
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 198 ASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINW 255
S D +R+++ TG+ V+ + H + S+ P K VLS S D +V +W NW
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 169 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC 214
SC + + GH V P P++ S S D T+++W++ T K
Sbjct: 219 SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 185 DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDK 244
D P +P + +AS D T+++W QT CV GH +V+ F P +++S S D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 245 SVHIWQA 251
++ IW +
Sbjct: 251 TLKIWNS 257
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRF 230
K+ F H D + +AV P +P + S S D TV+LW+ + + Q + GH V V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 231 LPNKDLVLSASG--DKSVHIW 249
P KD ASG D++V +W
Sbjct: 149 NP-KDPSTFASGCLDRTVKVW 168
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 174 RSFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWST-QTGKCVLQYSGHSGSVNSVRF- 230
++F GH V VA P P S DRTV++WS Q+ +G VN V +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 231 -LPNKDLVLSASGDKSVHIW 249
LP+K +++AS D ++ IW
Sbjct: 194 PLPDKPYMITASDDLTIKIW 213
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 198 ASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINW 255
S D +R+++ TG+ V+ + H + S+ P K VLS S D +V +W NW
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 169 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK 213
SC + + GH V P P++ S S D T+++W++ T K
Sbjct: 219 SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 185 DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDK 244
D P +P + +AS D T+++W QT CV GH +V+ F P +++S S D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 245 SVHIWQA 251
++ IW +
Sbjct: 251 TLKIWNS 257
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRF 230
K+ F H D + +AV P +P + S S D TV+LW+ + + Q + GH V V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 231 LPNKDLVLSASG--DKSVHIW 249
P KD ASG D++V +W
Sbjct: 149 NP-KDPSTFASGCLDRTVKVW 168
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 174 RSFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWST-QTGKCVLQYSGHSGSVNSVRF- 230
++F GH V VA P P S DRTV++WS Q+ +G VN V +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 231 -LPNKDLVLSASGDKSVHIW 249
LP+K +++AS D ++ IW
Sbjct: 194 PLPDKPYMITASDDLTIKIW 213
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 198 ASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINW 255
S D +R+++ TG+ V+ + H + S+ P K VLS S D +V +W NW
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Score = 28.5 bits (62), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 169 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK 213
SC + + GH V P P++ S S D T+++W++ T K
Sbjct: 219 SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYK 261
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 190 PGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
P +P + +AS D T+++W QT CV GH +V+ F P +++S S D ++ IW
Sbjct: 196 PDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIW 255
Query: 250 QA 251
+
Sbjct: 256 NS 257
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 4/81 (4%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRF 230
K+ F H D + +AV P +P + S S D TV+LW+ + + Q + GH V V F
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 231 LPNKDLVLSASG--DKSVHIW 249
P KD ASG D++V +W
Sbjct: 149 NP-KDPSTFASGCLDRTVKVW 168
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 174 RSFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWS-TQTGKCVLQYSGHSGSVNSVRF- 230
++F GH V VA P P S DRTV++WS Q+ +G VN V +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYY 193
Query: 231 -LPNKDLVLSASGDKSVHIW 249
LP+K +++AS D ++ IW
Sbjct: 194 PLPDKPYMITASDDLTIKIW 213
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 198 ASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINW 255
S D +R+++ TG+ V+ + H + S+ P K VLS S D +V +W NW
Sbjct: 73 GSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW 130
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 169 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC 214
SC + + GH V P P++ S S D T+++W++ T K
Sbjct: 219 SC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV 262
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 4/84 (4%)
Query: 169 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+C +R+ +GH+ G+ + R ++ S S+D T+RLW + G C+ GH V +
Sbjct: 285 TCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCI 342
Query: 229 RFLPNKDLVLSASGDKSVHIWQAV 252
RF NK +V S + D + +W V
Sbjct: 343 RF-DNKRIV-SGAYDGKIKVWDLV 364
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 84/184 (45%), Gaps = 36/184 (19%)
Query: 147 KTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRL 206
K + L+ T KI + + L C +I +GH V + ++ + V+ + S+D TVR+
Sbjct: 145 KIVSGLRDNTIKI---WDKNTLECKRI--LTGHTGSV--LCLQYDERVIITGSSDSTVRV 197
Query: 207 WSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVXXXXXXX 266
W TG+ + H +V +RF N ++++ S D+S+ +W
Sbjct: 198 WDVNTGEMLNTLIHHCEAVLHLRF--NNGMMVTCSKDRSIAVWDMA-------------- 241
Query: 267 XXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTI 326
+ ITLR + L+GH V D+ D + +++AS DR +++ T
Sbjct: 242 --------SPTDITLR---RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF 288
Query: 327 LQSL 330
+++L
Sbjct: 289 VRTL 292
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
R GHR V V + SAS DRT+++W+T T + V +GH + +++
Sbjct: 250 RVLVGHRAAV--NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--R 305
Query: 234 KDLVLSASGDKSVHIW 249
LV+S S D ++ +W
Sbjct: 306 DRLVVSGSSDNTIRLW 321
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 288 LLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAI 337
L GH+ V+ + D +IT S D ++DV TG +L +L EA+
Sbjct: 169 LTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV 216
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 38/186 (20%)
Query: 160 VSSFKTSLLSCY---KIRSFSGHRDG---------VWDVAVRPGQPVLGSASADRTVRLW 207
V S + +L C+ +IR + D W P+L A + +R+
Sbjct: 77 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 136
Query: 208 STQTGKCVLQYSGHSGSVNSVRFLP-NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXX 266
+ T +C+ Y GH ++N ++F P + +L+LS S D ++ +W +
Sbjct: 137 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------ 184
Query: 267 XXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTI 326
TL + GH + V++AD+ GE++++ D L+ + + +
Sbjct: 185 -------------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 231
Query: 327 LQSLTE 332
+ ++ E
Sbjct: 232 MNAIKE 237
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 38/186 (20%)
Query: 160 VSSFKTSLLSCY---KIRSFSGHRDG---------VWDVAVRPGQPVLGSASADRTVRLW 207
V S + +L C+ +IR + D W P+L A + +R+
Sbjct: 41 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 100
Query: 208 STQTGKCVLQYSGHSGSVNSVRFLP-NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXX 266
+ T +C+ Y GH ++N ++F P + +L+LS S D ++ +W +
Sbjct: 101 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------ 148
Query: 267 XXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTI 326
TL + GH + V++AD+ GE++++ D L+ + + +
Sbjct: 149 -------------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 195
Query: 327 LQSLTE 332
+ ++ E
Sbjct: 196 MNAIKE 201
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 38/186 (20%)
Query: 160 VSSFKTSLLSCY---KIRSFSGHRDG---------VWDVAVRPGQPVLGSASADRTVRLW 207
V S + +L C+ +IR + D W P+L A + +R+
Sbjct: 40 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 99
Query: 208 STQTGKCVLQYSGHSGSVNSVRFLP-NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXX 266
+ T +C+ Y GH ++N ++F P + +L+LS S D ++ +W +
Sbjct: 100 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------ 147
Query: 267 XXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTI 326
TL + GH + V++AD+ GE++++ D L+ + + +
Sbjct: 148 -------------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 327 LQSLTE 332
+ ++ E
Sbjct: 195 MNAIKE 200
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 38/186 (20%)
Query: 160 VSSFKTSLLSCY---KIRSFSGHRDG---------VWDVAVRPGQPVLGSASADRTVRLW 207
V S + +L C+ +IR + D W P+L A + +R+
Sbjct: 40 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 99
Query: 208 STQTGKCVLQYSGHSGSVNSVRFLP-NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXX 266
+ T +C+ Y GH ++N ++F P + +L+LS S D ++ +W +
Sbjct: 100 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------ 147
Query: 267 XXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTI 326
TL + GH + V++AD+ GE++++ D L+ + + +
Sbjct: 148 -------------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 194
Query: 327 LQSLTE 332
+ ++ E
Sbjct: 195 MNAIKE 200
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 77/186 (41%), Gaps = 38/186 (20%)
Query: 160 VSSFKTSLLSCY---KIRSFSGHRDG---------VWDVAVRPGQPVLGSASADRTVRLW 207
V S + +L C+ +IR + D W P+L A + +R+
Sbjct: 36 VGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRII 95
Query: 208 STQTGKCVLQYSGHSGSVNSVRFLP-NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXX 266
+ T +C+ Y GH ++N ++F P + +L+LS S D ++ +W +
Sbjct: 96 NPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD------------ 143
Query: 267 XXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTI 326
TL + GH + V++AD+ GE++++ D L+ + + +
Sbjct: 144 -------------TLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRM 190
Query: 327 LQSLTE 332
+ ++ E
Sbjct: 191 MNAIKE 196
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 173 IRSFSGHRDGVWDVAVRPGQP--VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRF 230
++SF GH V + + P + S D+ +W ++G+CV + H VNSVR+
Sbjct: 189 LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRY 248
Query: 231 LPNKDLVLSASGDKSVHIW 249
P+ D S S D + ++
Sbjct: 249 YPSGDAFASGSDDATCRLY 267
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 286 KELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAI 337
K + H+N + A + + Q++TAS D L+DVE+G +LQS G +
Sbjct: 148 KSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADV 199
Score = 32.3 bits (72), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 197 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK--DLVLSASGDKSVHIW 249
+AS D T LW ++G+ + + GH V + P++ + +S DK +W
Sbjct: 171 TASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVW 225
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 28/56 (50%)
Query: 286 KELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAA 341
+ L GH N V+ DW D +++++S D ++D T ++T P + A A
Sbjct: 58 RTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACA 113
Score = 29.6 bits (65), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 201 DRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
D T+ +W G V GH V+++R P+ S S D ++ +W
Sbjct: 305 DYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Query: 178 GHRDGVWDVAVRPG--QPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKD 235
GHRD V V P QP + SAS D+TV++W+ K +GH+G V++V P+
Sbjct: 515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS 574
Query: 236 LVLSASGDKSVHIW 249
L S D V +W
Sbjct: 575 LCASGGKDGVVLLW 588
Score = 41.2 bits (95), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 38/79 (48%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
R +GH V DV + S S D +RLW G ++ GH+ V SV F +
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLD 483
Query: 234 KDLVLSASGDKSVHIWQAV 252
++SAS D+++ +W +
Sbjct: 484 NRQIVSASRDRTIKLWNTL 502
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 168 LSCYKIRS-FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVN 226
LS K+RS +GH V VAV P + S D V LW GK + +S ++
Sbjct: 548 LSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANS-VIH 606
Query: 227 SVRFLPNKDLVLSASGDKSVHIW 249
++ F PN+ L A+ + + IW
Sbjct: 607 ALCFSPNR-YWLCAATEHGIKIW 628
Score = 33.1 bits (74), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/150 (21%), Positives = 57/150 (38%), Gaps = 34/150 (22%)
Query: 194 VLGSASADRTVRLW-----STQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHI 248
++ SAS D+++ LW G + +GHS V V + LS S D + +
Sbjct: 397 IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRL 456
Query: 249 WQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVI 308
W + + +GH+ V++ + D Q++
Sbjct: 457 WD----------------------------LAAGVSTRRFVGHTKDVLSVAFSLDNRQIV 488
Query: 309 TASWDRVANLFDVETGTILQSLTEPGEAIR 338
+AS DR L++ G +++E GE R
Sbjct: 489 SASRDRTIKLWNT-LGECKYTISEGGEGHR 517
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 23/94 (24%)
Query: 231 LPNKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLG 290
+ N D+++SAS DKS+ +W+ K+ + R L G
Sbjct: 392 IDNADIIVSASRDKSIILWK-------------------LTKDDKAYGVAQR----RLTG 428
Query: 291 HSNVVIAADWLSDGEQVITASWDRVANLFDVETG 324
HS+ V SDG+ ++ SWD L+D+ G
Sbjct: 429 HSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG 462
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
R+ GH V DV + S S D T+RLW TG ++ GH+ V SV F +
Sbjct: 80 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 139
Query: 234 KDLVLSASGDKSVHIWQAV 252
++S S DK++ +W +
Sbjct: 140 NRQIVSGSRDKTIKLWNTL 158
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 24/107 (22%)
Query: 220 GHSGSVNSVRFLPN-KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESS 278
GH+G V + P D++LSAS DK++ +W+ DE++
Sbjct: 36 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT---------------------RDETN 74
Query: 279 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGT 325
+ P + L GHS+ V SDG+ ++ SWD L+D+ TGT
Sbjct: 75 YGI--PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT 119
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 34/152 (22%)
Query: 175 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLW-----STQTGKCVLQYSGHSGSVNSV 228
+ GH V +A P P ++ SAS D+T+ +W T G GHS V+ V
Sbjct: 33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 92
Query: 229 RFLPNKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKEL 288
+ LS S D ++ +W +T T +
Sbjct: 93 VISSDGQFALSGSWDGTLRLWD----------------------------LTTGTTTRRF 124
Query: 289 LGHSNVVIAADWLSDGEQVITASWDRVANLFD 320
+GH+ V++ + SD Q+++ S D+ L++
Sbjct: 125 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 156
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 193 PVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
P++ S D+ V++W+ K + GH+G +N+V P+ L S D +W
Sbjct: 186 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 166 SLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSV 225
+L +C + GH + V V P + S D LW GK + G +
Sbjct: 201 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDII 259
Query: 226 NSVRFLPNKDLVLSASGDKSVHIW 249
N++ F PN+ + +A+G S+ IW
Sbjct: 260 NALCFSPNRYWLCAATG-PSIKIW 282
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
R+ GH V DV + S S D T+RLW TG ++ GH+ V SV F +
Sbjct: 57 RALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSD 116
Query: 234 KDLVLSASGDKSVHIWQAV 252
++S S DK++ +W +
Sbjct: 117 NRQIVSGSRDKTIKLWNTL 135
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 24/107 (22%)
Query: 220 GHSGSVNSVRFLPN-KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESS 278
GH+G V + P D++LSAS DK++ +W+ DE++
Sbjct: 13 GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLT---------------------RDETN 51
Query: 279 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGT 325
+ P + L GHS+ V SDG+ ++ SWD L+D+ TGT
Sbjct: 52 YGI--PQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGT 96
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 60/152 (39%), Gaps = 34/152 (22%)
Query: 175 SFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLW-----STQTGKCVLQYSGHSGSVNSV 228
+ GH V +A P P ++ SAS D+T+ +W T G GHS V+ V
Sbjct: 10 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDV 69
Query: 229 RFLPNKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKEL 288
+ LS S D ++ +W +T T +
Sbjct: 70 VISSDGQFALSGSWDGTLRLWD----------------------------LTTGTTTRRF 101
Query: 289 LGHSNVVIAADWLSDGEQVITASWDRVANLFD 320
+GH+ V++ + SD Q+++ S D+ L++
Sbjct: 102 VGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWN 133
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 193 PVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
P++ S D+ V++W+ K + GH+G +N+V P+ L S D +W
Sbjct: 163 PIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 166 SLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSV 225
+L +C + GH + V V P + S D LW GK + G +
Sbjct: 178 NLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDII 236
Query: 226 NSVRFLPNKDLVLSASGDKSVHIW 249
N++ F PN+ + +A+G S+ IW
Sbjct: 237 NALCFSPNRYWLCAATG-PSIKIW 259
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 32/189 (16%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL 231
K+ H D V A + + SAD+ V++W + TGK V Y HS VN F
Sbjct: 649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 708
Query: 232 PNKDLVLSASG--DKSVHIWQAVINWECLVXXXXXXXXXXXXK-EPDESSI-------TL 281
+ +L A+G D + +W + EC + PD+ + TL
Sbjct: 709 NKSNHLLLATGSNDFFLKLWD-LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 767
Query: 282 R------------TPVKELLGHSN--------VVIAADWLSDGEQVITASWDRVANLFDV 321
R VK S +V W +DG+++I A+ ++V LFD+
Sbjct: 768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDI 826
Query: 322 ETGTILQSL 330
T +L +
Sbjct: 827 HTSGLLAEI 835
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 238
H D V+ + S AD+T++++ +TG+ +L H V F + +
Sbjct: 614 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 673
Query: 239 SASGDKSVHIWQA 251
+ S DK V IW +
Sbjct: 674 TCSADKKVKIWDS 686
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 28/135 (20%)
Query: 195 LGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVIN 254
L S S D TV++W+ TG+ ++ H G+V S + S S DK+ IW
Sbjct: 1058 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW----- 1112
Query: 255 WECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDR 314
S L +P+ EL GH+ V + + DG + T +
Sbjct: 1113 -----------------------SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1149
Query: 315 VANLFDVETGTILQS 329
+++V G +L S
Sbjct: 1150 EIRIWNVSDGQLLHS 1164
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
R F+ H+ V A+ S SAD+T ++WS + + GH+G V F +
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--S 1136
Query: 234 KDLVLSASGDKS--VHIW 249
D +L A+GD + + IW
Sbjct: 1137 LDGILLATGDDNGEIRIW 1154
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 177 SGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDL 236
+GH + P + A + V LW+ + V GH V+ V F P+
Sbjct: 837 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 896
Query: 237 VLSASGDKSVHIWQ 250
L+AS D+++ +W+
Sbjct: 897 FLTASDDQTIRVWE 910
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 74/189 (39%), Gaps = 32/189 (16%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL 231
K+ H D V A + + SAD+ V++W + TGK V Y HS VN F
Sbjct: 656 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFT 715
Query: 232 PNKDLVLSASG--DKSVHIWQAVINWECLVXXXXXXXXXXXXK-EPDESSI-------TL 281
+ +L A+G D + +W + EC + PD+ + TL
Sbjct: 716 NKSNHLLLATGSNDFFLKLWD-LNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL 774
Query: 282 R------------TPVKELLGHSN--------VVIAADWLSDGEQVITASWDRVANLFDV 321
R VK S +V W +DG+++I A+ ++V LFD+
Sbjct: 775 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDI 833
Query: 322 ETGTILQSL 330
T +L +
Sbjct: 834 HTSGLLAEI 842
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 238
H D V+ + S AD+T++++ +TG+ +L H V F + +
Sbjct: 621 HTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIA 680
Query: 239 SASGDKSVHIWQA 251
+ S DK V IW +
Sbjct: 681 TCSADKKVKIWDS 693
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 54/135 (40%), Gaps = 28/135 (20%)
Query: 195 LGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVIN 254
L S S D TV++W+ TG+ ++ H G+V S + S S DK+ IW
Sbjct: 1065 LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW----- 1119
Query: 255 WECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDR 314
S L +P+ EL GH+ V + + DG + T +
Sbjct: 1120 -----------------------SFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNG 1156
Query: 315 VANLFDVETGTILQS 329
+++V G +L S
Sbjct: 1157 EIRIWNVSDGQLLHS 1171
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
R F+ H+ V A+ S SAD+T ++WS + + GH+G V F +
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAF--S 1143
Query: 234 KDLVLSASGDKS--VHIW 249
D +L A+GD + + IW
Sbjct: 1144 LDGILLATGDDNGEIRIW 1161
Score = 34.3 bits (77), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 177 SGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDL 236
+GH + P + A + V LW+ + V GH V+ V F P+
Sbjct: 844 TGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSS 903
Query: 237 VLSASGDKSVHIWQ 250
L+AS D+++ +W+
Sbjct: 904 FLTASDDQTIRVWE 917
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 16/151 (10%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 238
H V +++ P + S + D + +LW + G C ++GH +N++ F PN +
Sbjct: 194 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 253
Query: 239 SASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKE----------- 287
+ S D + ++ + E + +S L +
Sbjct: 254 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 313
Query: 288 -----LLGHSNVVIAADWLSDGEQVITASWD 313
L GH N V DG V T SWD
Sbjct: 314 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 344
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 197 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
++S D T LW +TG+ ++GH+G V S+ P+ L +S + D S +W
Sbjct: 170 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 222
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 217 QYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
+ +GH+G ++ RFL + +V S SGD + +W
Sbjct: 149 ELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 180
Score = 27.7 bits (60), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 286 KELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVE 322
+EL GH+ + +L D Q++T+S D L+D+E
Sbjct: 148 RELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIE 183
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 16/151 (10%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 238
H V +++ P + S + D + +LW + G C ++GH +N++ F PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 239 SASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKE----------- 287
+ S D + ++ + E + +S L +
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 288 -----LLGHSNVVIAADWLSDGEQVITASWD 313
L GH N V DG V T SWD
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 197 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
++S D T LW +TG+ ++GH+G V S+ P+ L +S + D S +W
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 27.7 bits (60), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 286 KELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVE 322
+EL GH+ + +L D Q++T+S D L+D+E
Sbjct: 137 RELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIE 172
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 16/151 (10%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 238
H V +++ P + S + D + +LW + G C ++GH +N++ F PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 239 SASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKE----------- 287
+ S D + ++ + E + +S L +
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 288 -----LLGHSNVVIAADWLSDGEQVITASWD 313
L GH N V DG V T SWD
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 31.6 bits (70), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 197 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
++S D T LW +TG+ ++GH+G V S+ P+ L +S + D S +W
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 286 KELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVE 322
+EL GH+ + +L D Q++T+S D L+D+E
Sbjct: 137 RELAGHTGYLSCCRFLDD-NQIVTSSGDTTCALWDIE 172
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 16/151 (10%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 238
H V +++ P + S + D + +LW + G C ++GH +N++ F PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 239 SASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKE----------- 287
+ S D + ++ + E + +S L +
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 288 -----LLGHSNVVIAADWLSDGEQVITASWD 313
L GH N V DG V T SWD
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 197 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
++S D T LW +TG+ ++GH+G V S+ P+ L +S + D S +W
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 217 QYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
+ +GH+G ++ RFL + +V S SGD + +W
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 169
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 44.3 bits (103), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/151 (21%), Positives = 54/151 (35%), Gaps = 16/151 (10%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 238
H V +++ P + S + D + +LW + G C ++GH +N++ F PN +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242
Query: 239 SASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKE----------- 287
+ S D + ++ + E + +S L +
Sbjct: 243 TGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA 302
Query: 288 -----LLGHSNVVIAADWLSDGEQVITASWD 313
L GH N V DG V T SWD
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 197 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
++S D T LW +TG+ ++GH+G V S+ P+ L +S + D S +W
Sbjct: 159 TSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLW 211
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 217 QYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
+ +GH+G ++ RFL + +V S SGD + +W
Sbjct: 138 ELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALW 169
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 173 IRSFSG-HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL 231
I++FSG H D V +AV + S S D ++L TG + Y GH V ++ L
Sbjct: 176 IKTFSGIHNDVVRHLAVVDDGHFI-SCSNDGLIKLVDXHTGDVLRTYEGHESFVYCIKLL 234
Query: 232 PNKDLVLSASGDKSVHIW 249
PN D+V S D++V IW
Sbjct: 235 PNGDIV-SCGEDRTVRIW 251
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+R++ GH V+ + + P ++ S DRTVR+WS + G + + S+ SV
Sbjct: 218 LRTYEGHESFVYCIKLLPNGDIV-SCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCXS 276
Query: 233 NKDLVLSAS 241
N D+++ +S
Sbjct: 277 NGDIIVGSS 285
Score = 34.7 bits (78), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 178 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSV---NSVRFLPNK 234
GH+ V ++ + G V+ S S D+T ++W + G V H+ SV V F NK
Sbjct: 102 GHQGNVCSLSFQDG--VVISGSWDKTAKVW--KEGSLVYNLQAHNASVWDAKVVSFSENK 157
Query: 235 DLVLSASGDKSVHIWQ 250
L+AS DK++ +WQ
Sbjct: 158 --FLTASADKTIKLWQ 171
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 197 SASADRTVRLWSTQ-TGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
S S D TVRLW + T + V Y GH G +NSV+F P+ + S D + ++
Sbjct: 223 SGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLF 276
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 64/162 (39%), Gaps = 34/162 (20%)
Query: 174 RSFSGHRDGVWDVAVRPGQPV-LGSASADRTVRLWSTQTGKCVLQY-----SGHSGSVNS 227
R +GH+ P Q L + S D+T LW TG+ + + SGH+ V S
Sbjct: 151 RVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLS 210
Query: 228 VRFLP-NKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVK 286
+ N ++ +S S D +V +W + IT R V+
Sbjct: 211 LSINSLNANMFISGSCDTTVRLW--------------------------DLRITSRA-VR 243
Query: 287 ELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 328
GH + + + DG++ T S D LFD+ TG LQ
Sbjct: 244 TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ 285
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 214 CVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKE 273
C GHSG V S+ + P K+ ++SAS D + +W A+ + +
Sbjct: 58 CCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFA 117
Query: 274 PDESSITL--------------------RTPVKELL-GHSNVVIAADWLSDGE-QVITAS 311
P+ S+ PV +L GH + ++ D E ++IT S
Sbjct: 118 PNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS 177
Query: 312 WDRVANLFDVETG 324
D+ L+DV TG
Sbjct: 178 GDQTCVLWDVTTG 190
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 7/88 (7%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGS-------V 225
+R++ GH + V P G+ S D T RL+ +TG + Y+ V
Sbjct: 242 VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIV 301
Query: 226 NSVRFLPNKDLVLSASGDKSVHIWQAVI 253
SV F + L+ + + ++W ++
Sbjct: 302 TSVAFSISGRLLFAGYSNGDCYVWDTLL 329
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 35/170 (20%)
Query: 178 GHRDGVWDVAVRP-GQPVLGSASADRTVRLWSTQTGKCVLQY-------SGHSGSVNSVR 229
GH V D+A P V+ S S D TV +W G VL GH+ V V
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 230 FLPN-KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKEL 288
+ P ++++LSA D + +W + +TL V
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTG---------------------AAVLTLGPDV--- 174
Query: 289 LGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIR 338
H + + + DW DG + T+ D+ + + GT++ P E R
Sbjct: 175 --HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR 222
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 64/170 (37%), Gaps = 35/170 (20%)
Query: 178 GHRDGVWDVAVRP-GQPVLGSASADRTVRLWSTQTGKCVLQY-------SGHSGSVNSVR 229
GH V D+A P V+ S S D TV +W G VL GH+ V V
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 230 FLPN-KDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKEL 288
+ P ++++LSA D + +W + +TL V
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDVGTG---------------------AAVLTLGPDV--- 174
Query: 289 LGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIR 338
H + + + DW DG + T+ D+ + + GT++ P E R
Sbjct: 175 --HPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTR 222
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 194 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 249
+L + SAD+TV LW + K L + H + V++ P+ + +L++SG D+ +H+W
Sbjct: 292 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 349
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 194 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 249
+L + SAD+TV LW + K L + H + V++ P+ + +L++SG D+ +H+W
Sbjct: 294 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 351
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 173 IRSFSGHRDGVW--DVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNSV 228
I + +GH VW D A +L S S D V +W + G+ + ++ HS SVNSV
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 229 RFLPNK--DLVLSASGDKSVHI 248
++ P++ L+L AS D V +
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSV 127
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 194 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 249
+L + SAD+TV LW + K L + H + V++ P+ + +L++SG D+ +H+W
Sbjct: 296 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW 353
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.4 bits (93), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 50/102 (49%), Gaps = 10/102 (9%)
Query: 162 SFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWST----QTGKCVLQ 217
+F+ LL+ GH + V VA L + S D++V +W T + +C+
Sbjct: 94 TFEMDLLAI-----IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISV 148
Query: 218 YSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAV-INWECL 258
HS V V + P++ L+ S+S D +V IW+ +WEC+
Sbjct: 149 LQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECV 190
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 173 IRSFSGHRDGVW--DVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNSV 228
I + +GH VW D A +L S S D V +W + G+ + ++ HS SVNSV
Sbjct: 48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 107
Query: 229 RFLPNK--DLVLSASGDKSVHI 248
++ P++ L+L AS D V +
Sbjct: 108 QWAPHEYGPLLLVASSDGKVSV 129
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 173 IRSFSGHRDGVW--DVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNSV 228
I + +GH VW D A +L S S D V +W + G+ + ++ HS SVNSV
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 229 RFLPNK--DLVLSASGDKSVHI 248
++ P++ L+L AS D V +
Sbjct: 106 QWAPHEYGPLLLVASSDGKVSV 127
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/199 (21%), Positives = 79/199 (39%), Gaps = 37/199 (18%)
Query: 149 TNKLKVQTSKIVSSFKTSLLSCYKIR--------SFSGHRDGVWDVAVRPGQPVLGSASA 200
TNK K + +V+ L+ +K R S GH+ GV V + P+ S+S
Sbjct: 42 TNK-KENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL 100
Query: 201 DRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVX 260
D +RLW + GK + ++ F P+ + + + V+I+
Sbjct: 101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGV--------- 151
Query: 261 XXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFD 320
E + +L T K +++ + DG+ + + + D + N+FD
Sbjct: 152 ------------ESGKKEYSLDTRGK-------FILSIAYSPDGKYLASGAIDGIINIFD 192
Query: 321 VETGTILQSLTEPGEAIRA 339
+ TG +L +L IR+
Sbjct: 193 IATGKLLHTLEGHAMPIRS 211
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%)
Query: 186 VAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKS 245
+A P L S + D + ++ TGK + GH+ + S+ F P+ L+++AS D
Sbjct: 170 IAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY 229
Query: 246 VHIW 249
+ I+
Sbjct: 230 IKIY 233
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%)
Query: 175 SFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNK 234
+ SGH V +VA P S+S+D++V++W T CV + H V V++ N
Sbjct: 243 TLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNG 302
Query: 235 DLVLSASGDKSVHIWQAVI 253
++S D+ +HI+ I
Sbjct: 303 SKIVSVGDDQEIHIYDCPI 321
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+ + GH + + P +L +AS D ++++ Q SGH+ V +V F P
Sbjct: 199 LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCP 258
Query: 233 N 233
+
Sbjct: 259 D 259
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 6/82 (7%)
Query: 173 IRSFSGHRDGVW--DVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNSV 228
I + +GH VW D A +L S S D V +W + G+ + ++ HS SVNSV
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 229 RFLPNK--DLVLSASGDKSVHI 248
++ P++ ++L AS D V +
Sbjct: 106 QWAPHEYGPMLLVASSDGKVSV 127
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 173 IRSFSGHRDGVW--DVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNSV 228
I + +GH VW D A +L S S D V +W + G+ + ++ HS SVNSV
Sbjct: 46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSV 105
Query: 229 RFLPNKD----LVLSASGDKSV 246
++ P++ LV S+ G SV
Sbjct: 106 QWAPHEYGPXLLVASSDGKVSV 127
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 37.7 bits (86), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 168 LSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNS 227
++ ++I + GH V +A R L S D V++W ++ + H+ +V +
Sbjct: 205 IANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKA 264
Query: 228 VRFLPNKDLVLSASG---DKSVHIWQA 251
V + P + +L+ G DK +H W A
Sbjct: 265 VAWCPWQSNLLATGGGTMDKQIHFWNA 291
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%)
Query: 285 VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAA 341
+ L GHS+ V W SDG Q+ + D V ++D + + T A++A A
Sbjct: 210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVA 266
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 37.7 bits (86), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Query: 194 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 249
+L + SAD+TV LW + K L + H + V++ P+ + +L++SG D+ +++W
Sbjct: 288 ILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVW 345
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.4 bits (85), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 194 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 249
+L + SAD+TV LW + K L + H + V + P+ + +L++SG D+ +++W
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 22/139 (15%)
Query: 186 VAVRPGQPV-LGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDK 244
V +P +P + S S D TV ++ K + H+ V+SVR+ P+ L S GD
Sbjct: 153 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 212
Query: 245 SVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDG 304
++ ++ V + V E D +L+ + HS V W DG
Sbjct: 213 TIVLYNGVDGTKTGVF------------EDD----SLKN-----VAHSGSVFGLTWSPDG 251
Query: 305 EQVITASWDRVANLFDVET 323
++ +AS D+ +++V T
Sbjct: 252 TKIASASADKTIKIWNVAT 270
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 8/88 (9%)
Query: 171 YKIRS-FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWS----TQTGKC---VLQYSGHS 222
+K +S F H V V P + S D T+ L++ T+TG L+ HS
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239
Query: 223 GSVNSVRFLPNKDLVLSASGDKSVHIWQ 250
GSV + + P+ + SAS DK++ IW
Sbjct: 240 GSVFGLTWSPDGTKIASASADKTIKIWN 267
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 194 VLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSASG-DKSVHIW 249
+L + SAD+TV LW + K L + H + V + P+ + +L++SG D+ +++W
Sbjct: 290 ILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 174 RSFSGHRDGVWDVAV-RPGQPVLGSASADRTVRLWSTQTGKCVLQY----SGHSGSVNSV 228
R+ GHR V D+A+ G+ VL SAS D T+RLW TG + + + H G VNS+
Sbjct: 172 RTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDG-VNSI 229
Query: 229 RFLPNKD 235
D
Sbjct: 230 ALFVGTD 236
Score = 35.4 bits (80), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 190 PGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
P L S+S D +++WS + G GH +V + + VLSAS D ++ +W
Sbjct: 146 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 205
Query: 250 QA 251
+
Sbjct: 206 EC 207
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 37.0 bits (84), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
Query: 173 IRSFSGHRDGVWDVAVRPGQP----VLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVN 226
I GH VW VA P +L S S DR V +W + G +++GH SVN
Sbjct: 50 IADLRGHEGPVWQVAW--AHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN 107
Query: 227 SVRFLPNKDLVLSASG 242
SV + P+ ++ A G
Sbjct: 108 SVCWAPHDYGLILACG 123
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 37.0 bits (84), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 174 RSFSGHRDGVWDVAV-RPGQPVLGSASADRTVRLWSTQTGKCVLQY----SGHSGSVNSV 228
R+ GHR V D+A+ G+ VL SAS D T+RLW TG + + + H G VNS+
Sbjct: 175 RTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWECGTGTTIHTFNRKENPHDG-VNSI 232
Query: 229 RFLPNKD 235
D
Sbjct: 233 ALFVGTD 239
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 190 PGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
P L S+S D +++WS + G GH +V + + VLSAS D ++ +W
Sbjct: 149 PSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLW 208
Query: 250 QA 251
+
Sbjct: 209 EC 210
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 194 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
+L SAS D T+R+W G + GHS S+ S ++ + D V+S S D SV +W
Sbjct: 261 LLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGD-DKVISCSMDGSVRLW 315
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 47/119 (39%), Gaps = 33/119 (27%)
Query: 209 TQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVXXXXXXXXX 268
T TGK + GH G ++ + F L+LSAS D ++ IW
Sbjct: 238 TPTGKLI----GHHGPISVLEFNDTNKLLLSASDDGTLRIWHG----------------- 276
Query: 269 XXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTIL 327
GHS +++A W+ D ++VI+ S D L+ ++ T+L
Sbjct: 277 -----------GNGNSQNCFYGHSQSIVSASWVGD-DKVISCSMDGSVRLWSLKQNTLL 323
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 24/172 (13%)
Query: 171 YKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK---CVLQ-YSGHSGSVN 226
+ + + SGH V + P L S D V +W + G+ LQ ++ H G+V
Sbjct: 221 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 280
Query: 227 SVRFLPNKDLVLSASG---DKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESS----- 278
+V + P + VL+ G D+ + IW V + CL P
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIWN-VCSGACLSAVDAHSQVCSILWSPHYKELISGH 339
Query: 279 -------ITLRTP----VKELLGHSNVVIAADWLSDGEQVITASWDRVANLF 319
+ + P V EL GH++ V++ DG V +A+ D L+
Sbjct: 340 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 35/152 (23%)
Query: 194 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVI 253
+G++SA+ V+LW Q K + + HS V S+ + +LS SG +S HI +
Sbjct: 163 AVGTSSAE--VQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILS-SGSRSGHIHHHDV 216
Query: 254 NWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWD 313
V L GHS V W DG + + D
Sbjct: 217 R-------------------------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND 251
Query: 314 RVANLFDVETG----TILQSLTEPGEAIRAAA 341
+ N++ G LQ+ T+ A++A A
Sbjct: 252 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.8 bits (81), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 24/172 (13%)
Query: 171 YKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK---CVLQ-YSGHSGSVN 226
+ + + SGH V + P L S D V +W + G+ LQ ++ H G+V
Sbjct: 232 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 291
Query: 227 SVRFLPNKDLVLSASG---DKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESS----- 278
+V + P + VL+ G D+ + IW V + CL P
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIWN-VCSGACLSAVDAHSQVCSILWSPHYKELISGH 350
Query: 279 -------ITLRTP----VKELLGHSNVVIAADWLSDGEQVITASWDRVANLF 319
+ + P V EL GH++ V++ DG V +A+ D L+
Sbjct: 351 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 35/152 (23%)
Query: 194 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVI 253
+G++SA+ V+LW Q K + + HS V S+ + +LS SG +S HI +
Sbjct: 174 AVGTSSAE--VQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILS-SGSRSGHIHHHDV 227
Query: 254 NWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWD 313
V L GHS V W DG + + D
Sbjct: 228 R-------------------------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND 262
Query: 314 RVANLFDVETG----TILQSLTEPGEAIRAAA 341
+ N++ G LQ+ T+ A++A A
Sbjct: 263 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Query: 179 HRDGVWDVAVRPG-QPVLGSASADRTVRLWSTQT--GKCVLQYS-GHSGSVNSVRFLPNK 234
H+ V VA+ P L +AS D+TV++W + GK YS H VN+ F P+
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L+ + ++ A W+C + P +++ R N+
Sbjct: 309 ARLLTTDQKSEIRVYSAS-QWDCPLGLIPHPHRHFQHLTPIKAAWHPRY---------NL 358
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
++ + + T R ++FD +G ++ L +P
Sbjct: 359 IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Query: 179 HRDGVWDVAVRPG-QPVLGSASADRTVRLWSTQT--GKCVLQYS-GHSGSVNSVRFLPNK 234
H+ V VA+ P L +AS D+TV++W + GK YS H VN+ F P+
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 308
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L+ + ++ A W+C + P +++ R N+
Sbjct: 309 ARLLTTDQKSEIRVYSAS-QWDCPLGLIPHPHRHFQHLTPIKAAWHPRY---------NL 358
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
++ + + T R ++FD +G ++ L +P
Sbjct: 359 IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 397
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 173 IRSFSGHRDGVWDVAVRPGQP---VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 229
+++F+ H+ V VA P Q G ++DR +R+W+ +G C+ HS V S+
Sbjct: 189 LQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS-QVCSIL 247
Query: 230 FLPNKDLVLSASG 242
+ P+ ++S G
Sbjct: 248 WSPHYKELISGHG 260
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 67/172 (38%), Gaps = 24/172 (13%)
Query: 171 YKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK---CVLQ-YSGHSGSVN 226
+ + + SGH V + P L S D V +W + G+ LQ ++ H G+V
Sbjct: 141 HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK 200
Query: 227 SVRFLPNKDLVLSASG---DKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESS----- 278
+V + P + VL+ G D+ + IW V + CL P
Sbjct: 201 AVAWCPWQSNVLATGGGTSDRHIRIWN-VCSGACLSAVDAHSQVCSILWSPHYKELISGH 259
Query: 279 -------ITLRTP----VKELLGHSNVVIAADWLSDGEQVITASWDRVANLF 319
+ + P V EL GH++ V++ DG V +A+ D L+
Sbjct: 260 GFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 58/152 (38%), Gaps = 35/152 (23%)
Query: 194 VLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVI 253
+G++SA+ V+LW Q K + + HS V S+ + +LS SG +S HI +
Sbjct: 83 AVGTSSAE--VQLWDVQQQKRLRNMTSHSARVGSLSW---NSYILS-SGSRSGHIHHHDV 136
Query: 254 NWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWD 313
V L GHS V W DG + + D
Sbjct: 137 R-------------------------VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGND 171
Query: 314 RVANLFDVETG----TILQSLTEPGEAIRAAA 341
+ N++ G LQ+ T+ A++A A
Sbjct: 172 NLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 65/159 (40%), Gaps = 14/159 (8%)
Query: 179 HRDGVWDVAVRPG-QPVLGSASADRTVRLWSTQT--GKCVLQYS-GHSGSVNSVRFLPNK 234
H+ V VA+ P L +AS D+TV++W + GK YS H VN+ F P+
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDG 309
Query: 235 DLVLSASGDKSVHIWQAVINWECLVXXXXXXXXXXXXKEPDESSITLRTPVKELLGHSNV 294
+L+ + ++ A W+C + P +++ R N+
Sbjct: 310 ARLLTTDQKSEIRVYSAS-QWDCPLGLIPHPHRHFQHLTPIKAAWHPRY---------NL 359
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEP 333
++ + + T R ++FD +G ++ L +P
Sbjct: 360 IVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP 398
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 34.3 bits (77), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL--PNKDL 236
H V DV + +AS D+T ++W + + +Q + H V ++ ++ PN
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-AIQIAQHDAPVKTIHWIKAPNYSC 143
Query: 237 VLSASGDKSVHIW 249
V++ S DK++ W
Sbjct: 144 VMTGSWDKTLKFW 156
Score = 31.6 bits (70), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 291 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQ 328
H+ V+ W DG +V TAS D+ A ++D+ + +Q
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ 122
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL 231
++ + GH +W + V + SAD +++LW G+CV + V V F
Sbjct: 66 RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKS-PVPVKRVEFS 124
Query: 232 PNKDLVLS 239
P + L+
Sbjct: 125 PCGNYFLA 132
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 177 SGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDL 236
+GH + V +L S S D + +W + G+ + GH+G++ S+
Sbjct: 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKY 88
Query: 237 VLSASGDKSVHIWQAVINWECLV 259
++ S D S+ +W V N +C+
Sbjct: 89 CVTGSADYSIKLWD-VSNGQCVA 110
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 197 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKD-LVLSASGDKSVHIW 249
S D +V++W + Y+ HS VN V P KD + LS D + +W
Sbjct: 156 SGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 43/100 (43%), Gaps = 19/100 (19%)
Query: 169 SCYKIRSFSGHRDGVWDVAVRPGQP-VLGSASADRTVRLWSTQTGKCVL----QYSG--- 220
SC I GHR + V+ P +L +ASAD V+LW + L Q++G
Sbjct: 177 SCSHI--LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKS 234
Query: 221 ---------HSGSVNSVRFLPNKDLVLSASGDKSVHIWQA 251
H+G VN + F + +L+ D + +W +
Sbjct: 235 QAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNS 274
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 204 VRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL-SASGDKSVHIWQAVINWECLV 259
V+L ++G C GH + +V + P D +L +AS D V +W CL+
Sbjct: 168 VQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLI 224
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 30.4 bits (67), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 33/161 (20%), Positives = 69/161 (42%), Gaps = 13/161 (8%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+R F GH DG + + L + D TVR W + G+ LQ + + S+ + P
Sbjct: 176 VRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCP 234
Query: 233 NKDLV---LSASGDKSVHI-----WQAVINWECLVXXXXXXXXXXXXKEPDESSI-TLRT 283
+ + + +S + +H+ +Q ++ C++ ++ + RT
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 294
Query: 284 PVKELL---GHSNVVIAADWLSDGEQVITASWDRVANLFDV 321
P + S+ V++ D D + ++T S D+ A +++V
Sbjct: 295 PYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 28.1 bits (61), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 13/98 (13%)
Query: 152 LKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQT 211
L T +I + +S +CY + A+ P V S +D + +W
Sbjct: 126 LAAPTPRIKAELTSSAPACYAL-------------AISPDSKVCFSCCSDGNIAVWDLHN 172
Query: 212 GKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
V Q+ GH+ + + + + + D +V W
Sbjct: 173 QTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSW 210
>pdb|3F9G|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.5
pdb|3F9G|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.5
Length = 303
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 133 KQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQ 192
+ KV SNP K K +++Q + S +L+CY +G GV+ A+RP
Sbjct: 90 RLKVDTSNPKTPKYKF---VRIQPGQTFS-----VLACY-----NGSPSGVYQCAMRPNH 136
Query: 193 PVLGSA 198
+ GSA
Sbjct: 137 TIKGSA 142
>pdb|3F9F|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.0
pdb|3F9F|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 6.0
pdb|3F9H|A Chain A, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 7.6
pdb|3F9H|B Chain B, Crystal Structure Of The F140a Mutant Of Sars-Coronovirus
3c-Like Protease At Ph 7.6
Length = 308
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 13/66 (19%)
Query: 133 KQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQ 192
+ KV SNP K K +++Q + S +L+CY +G GV+ A+RP
Sbjct: 90 RLKVDTSNPKTPKYKF---VRIQPGQTFS-----VLACY-----NGSPSGVYQCAMRPNH 136
Query: 193 PVLGSA 198
+ GSA
Sbjct: 137 TIKGSA 142
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 33/61 (54%), Gaps = 5/61 (8%)
Query: 194 VLGSASADRTVRLWSTQTGKCVL----QYSGHSGSVNSVRFLPNKDLVLSASGDKS-VHI 248
++ A + ++ L+ST + ++S HS SV +V+F +D VL++ G+ + I
Sbjct: 81 IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFI 140
Query: 249 W 249
W
Sbjct: 141 W 141
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 197 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLV-LSASGDKSVHIW 249
S S D +++W + Y H+ V V P+KD V LS S D + +W
Sbjct: 144 SGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|2G9B|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
pdb|2F33|A Chain A, Nmr Solution Structure Of Ca2+-Loaded Calbindin D28k
Length = 263
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 1 MVESDPLKNFLKDLIRTHNMPQSDT 25
+E++ LKNFLKDL+ N DT
Sbjct: 119 FIETEELKNFLKDLLEKANKTVDDT 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.129 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,510,724
Number of Sequences: 62578
Number of extensions: 338729
Number of successful extensions: 1282
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 647
Number of HSP's gapped (non-prelim): 483
length of query: 360
length of database: 14,973,337
effective HSP length: 100
effective length of query: 260
effective length of database: 8,715,537
effective search space: 2266039620
effective search space used: 2266039620
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (24.6 bits)