RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy11015
(360 letters)
>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor
acetylhydrolase IB subunit alpha {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 317
Score = 85.9 bits (211), Expect = 1e-19
Identities = 32/151 (21%), Positives = 53/151 (35%), Gaps = 28/151 (18%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 229
S G P L S S D+T+++W TG C++ GH V V
Sbjct: 195 PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL 254
Query: 230 FLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELL 289
F +LS + DK++ +W D + +K L
Sbjct: 255 FHSGGKFILSCADDKTLRVW-----------------DYKNKR-----------CMKTLN 286
Query: 290 GHSNVVIAADWLSDGEQVITASWDRVANLFD 320
H + V + D+ V+T S D+ +++
Sbjct: 287 AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
Score = 81.7 bits (200), Expect = 4e-18
Identities = 42/183 (22%), Positives = 66/183 (36%), Gaps = 14/183 (7%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+ SGHR V V P V+ SAS D T+++W +TG GH+ SV + F
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69
Query: 233 NKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITL----------- 281
+ L+ S S D ++ +W + + + S P+ I
Sbjct: 70 SGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWE 129
Query: 282 ---RTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIR 338
VK GH V DG + + S D+ ++ V T L E +
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 339 AAA 341
+
Sbjct: 190 CIS 192
Score = 79.0 bits (193), Expect = 3e-17
Identities = 33/183 (18%), Positives = 69/183 (37%), Gaps = 8/183 (4%)
Query: 169 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+ Y +++F+GHR+ V V ++ S S D+TVR+W T +C + H V +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191
Query: 229 RFLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKEL 288
+ P + S L + D + + + L
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST--------GMCLMTL 243
Query: 289 LGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAAGRTGGPI 348
+GH N V + S G+ +++ + D+ ++D + +++L + + P
Sbjct: 244 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 349 RAS 351
+
Sbjct: 304 VVT 306
Score = 62.1 bits (149), Expect = 2e-11
Identities = 46/182 (25%), Positives = 77/182 (42%), Gaps = 8/182 (4%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 229
IR+ GH V V++ P + SAS D+T+++W QTG CV ++GH V VR
Sbjct: 91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVR 150
Query: 230 FLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELL 289
+ L+ S S D++V +W V+ + ++L E + E +
Sbjct: 151 PNQDGTLIASCSNDQTVRVWV--------VATKECKAELREHRHVVECISWAPESSYSSI 202
Query: 290 GHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAAGRTGGPIR 349
+ G +++ S D+ ++DV TG L +L +R +GG
Sbjct: 203 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFI 262
Query: 350 AS 351
S
Sbjct: 263 LS 264
Score = 47.0 bits (110), Expect = 1e-06
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 284 PVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
L GH + V + +++AS D ++D ETG ++L ++++
Sbjct: 9 EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQD 64
Score = 44.0 bits (102), Expect = 1e-05
Identities = 8/42 (19%), Positives = 19/42 (45%)
Query: 166 SLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLW 207
+ +++ + H V + P + + S D+TV++W
Sbjct: 275 DYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G
protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}
Length = 340
Score = 80.9 bits (198), Expect = 1e-17
Identities = 37/167 (22%), Positives = 70/167 (41%), Gaps = 16/167 (9%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 229
+ +F+GH V +++ P + S + D + +LW + G C ++GH +N++
Sbjct: 174 GQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAIC 233
Query: 230 FLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDND----SDLDESKEP-------DESS 278
F PN + + S D + ++ + E + ++DN + + SK D+ +
Sbjct: 234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293
Query: 279 ITL-----RTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFD 320
+ L GH N V DG V T SWD +++
Sbjct: 294 CNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 57.8 bits (138), Expect = 4e-10
Identities = 32/185 (17%), Positives = 56/185 (30%), Gaps = 17/185 (9%)
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
R+ GH ++ + +L SAS D + +W + T V S V + + P+
Sbjct: 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPS 108
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPD-----------------E 276
+ V D I+ + + +
Sbjct: 109 GNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCAL 168
Query: 277 SSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEA 336
I GH+ V++ D ++ + D A L+DV G Q+ T
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD 228
Query: 337 IRAAA 341
I A
Sbjct: 229 INAIC 233
Score = 45.9 bits (107), Expect = 3e-06
Identities = 8/43 (18%), Positives = 18/43 (41%)
Query: 166 SLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWS 208
L + +GH + V + V + + S D +++W+
Sbjct: 298 DALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
Score = 41.6 bits (96), Expect = 9e-05
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 1/71 (1%)
Query: 271 SKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSL 330
+ I +RT + L GH + A W +D +++AS D ++D T + ++
Sbjct: 35 NNIDPVGRIQMRTR-RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAI 93
Query: 331 TEPGEAIRAAA 341
+ A
Sbjct: 94 PLRSSWVMTCA 104
Score = 38.9 bits (89), Expect = 7e-04
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 213 KCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQA 251
+ GH + ++ + + L++SAS D + IW +
Sbjct: 46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDS 84
>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 337
Score = 75.6 bits (184), Expect = 6e-16
Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 1/81 (1%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 229
H V + S D + W T G + Q S SV S
Sbjct: 255 KPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCD 313
Query: 230 FLPNKDLVLSASGDKSVHIWQ 250
+ +++ SGDK +++
Sbjct: 314 ISVDDKYIVTGSGDKKATVYE 334
Score = 56.0 bits (133), Expect = 2e-09
Identities = 11/85 (12%), Positives = 24/85 (28%), Gaps = 6/85 (7%)
Query: 178 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC-----VLQYSGHSGSVNSVRFLP 232
H + V V + + + V++W L + S + LP
Sbjct: 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107
Query: 233 NKDLVLSASGDKSVHIWQAVINWEC 257
+ ++ ++ IW
Sbjct: 108 DGCTLIVGGEASTLSIWDLAAPTPR 132
Score = 54.4 bits (129), Expect = 6e-09
Identities = 20/152 (13%), Positives = 42/152 (27%), Gaps = 30/152 (19%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 229
+ ++ + P L V + Q H V S++
Sbjct: 214 EGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY-QLHLHESCVLSLK 272
Query: 230 FLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELL 289
F +S D ++ W+ +
Sbjct: 273 FAYCGKWFVSTGKDNLLNAWR-TPYGASIFQ----------------------------S 303
Query: 290 GHSNVVIAADWLSDGEQVITASWDRVANLFDV 321
S+ V++ D D + ++T S D+ A +++V
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
Score = 37.5 bits (85), Expect = 0.002
Identities = 7/50 (14%), Positives = 18/50 (36%)
Query: 291 HSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAA 340
H + V++ + G+ ++ D + N + G + E +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCD 313
Score = 34.8 bits (78), Expect = 0.015
Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 1/44 (2%)
Query: 289 LGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
L H VV A + V T ++D+ +++
Sbjct: 48 LNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQ 90
>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 388
Score = 72.9 bits (177), Expect = 6e-15
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 169 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
S ++ GH+D V VA + S S DR V W ++G +L GH SV SV
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISV 356
Query: 229 ------RFLPNKDLVLSASGDKSVHIWQ 250
P ++ + SGD IW+
Sbjct: 357 AVANGSSLGPEYNVFATGSGDCKARIWK 384
Score = 71.0 bits (172), Expect = 3e-14
Identities = 40/169 (23%), Positives = 59/169 (34%), Gaps = 46/169 (27%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK------------CVLQYS 219
+ S +GH+D V+ V + S S DR+V+LW+ Q C + Y
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYI 305
Query: 220 GHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSI 279
GH V SV N + +LS S D+ V W D
Sbjct: 306 GHKDFVLSVATTQNDEYILSGSKDRGVLFW-----------------DKKSGN------- 341
Query: 280 TLRTPVKELLGHSNVVIAADWLS------DGEQVITASWDRVANLFDVE 322
P+ L GH N VI+ + + T S D A ++ +
Sbjct: 342 ----PLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
Score = 68.3 bits (165), Expect = 2e-13
Identities = 39/185 (21%), Positives = 70/185 (37%), Gaps = 23/185 (12%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQY-------SGHSGSVNSVRFL 231
+ + S DR VR+W ++TG V + +GH SV SV F
Sbjct: 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT 263
Query: 232 PNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGH 291
+ V+S S D+SV +W + + + D + T +GH
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQ----------------NANNKSDSKTPNSGTCEVTYIGH 307
Query: 292 SNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAAGRTGGPIRAS 351
+ V++ + E +++ S DR +D ++G L L ++ + A G +
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367
Query: 352 PLLLA 356
+ A
Sbjct: 368 YNVFA 372
Score = 51.0 bits (120), Expect = 9e-08
Identities = 14/126 (11%), Positives = 45/126 (35%), Gaps = 15/126 (11%)
Query: 191 GQPVLGSASADRTVRLWSTQTGKC----VLQYSGHSGSVNSVRFLPNKDLVLSASGDKSV 246
P + L++ + + + H+ V V+F + + + + +K+
Sbjct: 27 SVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTT 85
Query: 247 HIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQ 306
+++ V + + +D+ + + + + SS + + + DG+
Sbjct: 86 QVYR-VSDGSLVARLSDDSAANKDPENLNTSS---------SPSSDLYIRSVCFSPDGKF 135
Query: 307 VITASW 312
+ T +
Sbjct: 136 LATGAE 141
Score = 34.4 bits (77), Expect = 0.020
Identities = 12/59 (20%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Query: 280 TLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIR 338
+ + + L H++VV + +DGE + T ++ ++ V G+++ L++ A +
Sbjct: 50 EIDVELHKSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANK 107
>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos
taurus) [TaxId: 9913]}
Length = 371
Score = 69.9 bits (169), Expect = 6e-14
Identities = 12/83 (14%), Positives = 31/83 (37%), Gaps = 2/83 (2%)
Query: 177 SGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVL--QYSGHSGSVNSVRFLPNK 234
S + + A + + + V ++ K V + H+G V V + P+
Sbjct: 4 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS 63
Query: 235 DLVLSASGDKSVHIWQAVINWEC 257
+ +++ D++ ++W
Sbjct: 64 NRIVTCGTDRNAYVWTLKGRTWK 86
Score = 49.9 bits (117), Expect = 2e-07
Identities = 30/234 (12%), Positives = 65/234 (27%), Gaps = 16/234 (6%)
Query: 107 RESIINEKYPECNDMECVTNMNKNFNKQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTS 166
+ + + + ++ + S ++ + +V+ + + +
Sbjct: 128 NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187
Query: 167 LLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVN 226
+ + S V V + S D TV L V + + +
Sbjct: 188 MPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLL 247
Query: 227 SVRFLPNKDLVLSASGDKSVHIWQAVINWECL---------VSNNDNDSDLDESKEPD-- 275
+V F+ LV + V + S+ + + + D
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307
Query: 276 -ESSITLRTPVKELLGHSNVVIAADWLSDGE----QVITASWDRVANLFDVETG 324
S + H N V LS G+ Q T D +++DV +
Sbjct: 308 ASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 361
Score = 49.1 bits (115), Expect = 3e-07
Identities = 17/103 (16%), Positives = 34/103 (33%), Gaps = 26/103 (25%)
Query: 218 YSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDES 277
+S ++ + ++ + + VHI+ + +K
Sbjct: 3 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIY-----------------EKSGNK----- 40
Query: 278 SITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFD 320
V EL H+ V DW D +++T DR A ++
Sbjct: 41 ----WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79
Score = 42.9 bits (99), Expect = 4e-05
Identities = 9/65 (13%), Positives = 19/65 (29%)
Query: 157 SKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVL 216
+ V ++ S ++ H V V P + + DR +W+ +
Sbjct: 28 NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKP 87
Query: 217 QYSGH 221
Sbjct: 88 TLVIL 92
Score = 36.8 bits (83), Expect = 0.003
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 4/49 (8%)
Query: 173 IRSFSGHRDGVWDVAVRPGQP----VLGSASADRTVRLWSTQTGKCVLQ 217
S H++ V ++V G + D + +W ++ + L+
Sbjct: 318 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 366
Score = 33.3 bits (74), Expect = 0.040
Identities = 25/186 (13%), Positives = 48/186 (25%), Gaps = 31/186 (16%)
Query: 160 VSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGK------ 213
+ F+ R V + P +L + S D R++S +
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180
Query: 214 ------------CVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVSN 261
+ + S G V+ V F N V S D +V + A
Sbjct: 181 PTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA 240
Query: 262 NDNDSDLDESKEPDESSIT-------------LRTPVKELLGHSNVVIAADWLSDGEQVI 308
++ L + + S + G +V + +
Sbjct: 241 SETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARER 300
Query: 309 TASWDR 314
+ D+
Sbjct: 301 FQNLDK 306
Score = 32.1 bits (71), Expect = 0.100
Identities = 4/40 (10%), Positives = 12/40 (30%)
Query: 295 VIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPG 334
+ W D Q+ + ++++ +Q
Sbjct: 10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKE 49
>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 355
Score = 68.0 bits (164), Expect = 3e-13
Identities = 20/86 (23%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFL 231
+ + GH V + + + D+ +R++ + K +LQ SGH G V ++++
Sbjct: 4 QRTTLRGHMTSVITCLQFEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 62
Query: 232 PNKDLVLSASGDKSVHIWQAVINWEC 257
LV S S D++V +W
Sbjct: 63 HGGILV-SGSTDRTVRVWDIKKGCCT 87
Score = 61.8 bits (148), Expect = 3e-11
Identities = 13/81 (16%), Positives = 28/81 (34%), Gaps = 2/81 (2%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSV 228
R FS H + + + + ++ +++ ++GK V + + SV
Sbjct: 271 NDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 330
Query: 229 RFLPNKDLVLSASGDKSVHIW 249
F LV + D +
Sbjct: 331 NFKGKT-LVAAVEKDGQSFLE 350
Score = 44.5 bits (103), Expect = 1e-05
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 288 LLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAAGRTGGP 347
L GH VI + VIT + D++ ++D L L+ + A GG
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGI 66
Query: 348 I 348
+
Sbjct: 67 L 67
Score = 37.2 bits (84), Expect = 0.002
Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 13/183 (7%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 229
Y + GH V V+ V GS D T+ +W KC+ SGH+ + S
Sbjct: 151 PYFVGVLRGHMASVRTVSGHGNIVVSGSY--DNTLIVWDVAQMKCLYILSGHTDRIYSTI 208
Query: 230 FLPNKDLVLSASGDKSV----------HIWQAVINWECLVSNNDNDSDLDESKEPDESSI 279
+ + +SAS D ++ + + + + +
Sbjct: 209 YDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGW 268
Query: 280 TLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQS-LTEPGEAIR 338
++ H + A + ++ + + N++++ +G ++ + + + + I
Sbjct: 269 DANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328
Query: 339 AAA 341
+
Sbjct: 329 SVN 331
>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 342
Score = 67.6 bits (163), Expect = 3e-13
Identities = 13/88 (14%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC---VLQYSGHSGSVNSVR 229
++ +D + D+ + P + +L S D ++ ++ +LQ + +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63
Query: 230 FLPNKDLVLSASGDKSVHIWQAVINWEC 257
F+ N DL + + + +I
Sbjct: 64 FIDNTDLQIYVGTVQGEILKVDLIGSPS 91
Score = 62.2 bits (149), Expect = 2e-11
Identities = 19/139 (13%), Positives = 45/139 (32%), Gaps = 1/139 (0%)
Query: 114 KYPECNDMECVTNMNKNFNKQKVLASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKI 173
E + ++ K++ + S Q SS + +
Sbjct: 185 GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLN 244
Query: 174 RSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
+ V + P L +A +D + W+ QT K + ++ + V+ +
Sbjct: 245 LKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIACS 303
Query: 234 KDLVLSASGDKSVHIWQAV 252
+++ A+ D + A+
Sbjct: 304 DNILCLATSDDTFKTNAAI 322
Score = 51.0 bits (120), Expect = 8e-08
Identities = 11/101 (10%), Positives = 34/101 (33%), Gaps = 25/101 (24%)
Query: 213 KCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESK 272
+ V ++ ++ +P+K L+L S D S+ ++ D
Sbjct: 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVY-----------------KFDIQA 44
Query: 273 EPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWD 313
+ + + L + + ++ +++ + + I
Sbjct: 45 K--------NVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77
Score = 38.3 bits (87), Expect = 0.001
Identities = 4/41 (9%), Positives = 12/41 (29%)
Query: 290 GHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSL 330
+ + + ++ SWD ++ + L
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDL 49
Score = 36.4 bits (82), Expect = 0.004
Identities = 14/145 (9%), Positives = 42/145 (28%), Gaps = 17/145 (11%)
Query: 200 ADRTVRLWSTQTGKCVLQYSGHSGS----VNSVRFLPNKDLVLSASGDKSVHIWQAVINW 255
+ V+ + + SG + ++ +S D V +
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVE------ 221
Query: 256 ECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRV 315
D D+ + + + V + ++ + + TA D +
Sbjct: 222 -------FFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274
Query: 316 ANLFDVETGTILQSLTEPGEAIRAA 340
+ ++++T +++ + E
Sbjct: 275 ISCWNLQTRKKIKNFAKFNEDSVVK 299
>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 311
Score = 65.3 bits (157), Expect = 1e-12
Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 1/81 (1%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSG-SVNSV 228
H V+ + P + SASAD+T+++W+ T K + +
Sbjct: 228 EDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 287
Query: 229 RFLPNKDLVLSASGDKSVHIW 249
+ K ++S S + ++
Sbjct: 288 GIIWTKQALVSISANGFINFV 308
Score = 58.0 bits (138), Expect = 4e-10
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 1/78 (1%)
Query: 180 RDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLS 239
R + P + + +V + Y+ HS + P+ S
Sbjct: 17 RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCAS 75
Query: 240 ASGDKSVHIWQAVINWEC 257
+V IW
Sbjct: 76 GDVHGNVRIWDTTQTTHI 93
Score = 42.6 bits (98), Expect = 4e-05
Identities = 10/87 (11%), Positives = 20/87 (22%), Gaps = 2/87 (2%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTG--KCVLQYSGHSGSVNSVRF 230
++ H P S VR+W T SG V + +
Sbjct: 51 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISW 110
Query: 231 LPNKDLVLSASGDKSVHIWQAVINWEC 257
+ + + + +
Sbjct: 111 DSESKRIAAVGEGRERFGHVFLFDTGT 137
Score = 37.2 bits (84), Expect = 0.002
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 29/117 (24%)
Query: 207 WSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDS 266
+ L+ HSGSV + + P+ + SAS DK++ IW
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIW----------------- 265
Query: 267 DLDESKEPDESSITLRTPVKELLGHSNVVIAA-DWLSDGEQVITASWDRVANLFDVE 322
++ K K + + + + + +++ S + N + E
Sbjct: 266 NVATLK-----------VEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
Score = 36.4 bits (82), Expect = 0.003
Identities = 11/92 (11%), Positives = 20/92 (21%), Gaps = 29/92 (31%)
Query: 223 GSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLR 282
G+ + P D + +G SV+ +
Sbjct: 18 GTAVVLGNTPAGDKIQYCNGT-SVYTV----------------------------PVGSL 48
Query: 283 TPVKELLGHSNVVIAADWLSDGEQVITASWDR 314
T + HS+ A G +
Sbjct: 49 TDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG 80
Score = 34.9 bits (78), Expect = 0.011
Identities = 8/33 (24%), Positives = 19/33 (57%)
Query: 299 DWLSDGEQVITASWDRVANLFDVETGTILQSLT 331
W DG ++ +AS D+ +++V T + +++
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIP 277
>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein
7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}
Length = 342
Score = 63.7 bits (153), Expect = 6e-12
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 1/85 (1%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+ GH D V G + S S D T+++WS TGKC+ GH+G V S +
Sbjct: 9 PKVLKGHDDHVITCLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD 67
Query: 233 NKDLVLSASGDKSVHIWQAVINWEC 257
N + S V +
Sbjct: 68 NIIISGSTDRTLKVWNAETGECIHT 92
Score = 54.8 bits (130), Expect = 4e-09
Identities = 17/89 (19%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCV-----LQYSGHSGS 224
++ + H+ V + + ++S D TV+LW +TG+ + L+ G G
Sbjct: 250 LQTLQGPNKHQSAVTCLQFNKNFVI--TSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 307
Query: 225 VNSVRFLPNKDLVLSASGDKS----VHIW 249
V +R K + S + + + +
Sbjct: 308 VWRIRASNTKLVCAVGSRNGTEETKLLVL 336
Score = 54.0 bits (128), Expect = 8e-09
Identities = 29/162 (17%), Positives = 58/162 (35%), Gaps = 31/162 (19%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVR 229
+ + GH + V+ + V S S D ++R+W +TG C+ +GH + +
Sbjct: 167 ETCLHTLQGHTNRVYSLQFDGIHVV--SGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224
Query: 230 FLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELL 289
++++S + D +V IW
Sbjct: 225 L--KDNILVSGNADSTVKIWDIKTGQCLQTLQGP-------------------------- 256
Query: 290 GHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLT 331
+ + + VIT+S D L+D++TG +++L
Sbjct: 257 -NKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV 297
Score = 48.3 bits (113), Expect = 7e-07
Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 207 WSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECL 258
W K GH V + + ++S S D ++ +W + +CL
Sbjct: 1 WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWS-AVTGKCL 50
Score = 46.3 bits (108), Expect = 3e-06
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 283 TPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAA 341
K L GH + VI G ++++ S D ++ TG L++L + ++
Sbjct: 7 KSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQ 64
Score = 37.1 bits (84), Expect = 0.002
Identities = 38/229 (16%), Positives = 72/229 (31%), Gaps = 35/229 (15%)
Query: 142 SAQKLKTTNKLKVQTSKIVSSFKTS---LLSCYK--------------IRSFSGHRDGVW 184
+LK+ LK +++ + ++S +R+ GH GVW
Sbjct: 2 RRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVW 61
Query: 185 DVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDK 244
+R + S L ++ + + ++ V+S S D
Sbjct: 62 SSQMRDNIII----SGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDA 117
Query: 245 SVHIWQAVINWECLVSNNDNDSDLDESKEPDE------------SSITLRTPVKELLGHS 292
++ +W V + + T + L GH+
Sbjct: 118 TLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHT 177
Query: 293 NVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAA 341
N V + + DG V++ S D ++DVETG + +LT
Sbjct: 178 NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGME 224
Score = 33.2 bits (74), Expect = 0.042
Identities = 6/45 (13%), Positives = 12/45 (26%), Gaps = 4/45 (8%)
Query: 167 LLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRT----VRLW 207
+ G VW + + V S + T + +
Sbjct: 292 FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336
>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode
(Caenorhabditis elegans) [TaxId: 6239]}
Length = 299
Score = 63.5 bits (152), Expect = 6e-12
Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 1/78 (1%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYS-GHSGSVNSVRFL 231
+ GH + ++ L SA A+ + W TG + H+ + ++
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64
Query: 232 PNKDLVLSASGDKSVHIW 249
DL + D +
Sbjct: 65 SKGDLFTVSWDDHLKVVP 82
Score = 55.8 bits (132), Expect = 2e-09
Identities = 17/82 (20%), Positives = 33/82 (40%), Gaps = 2/82 (2%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC--VLQYSGHSGSVNS 227
S++ H V V+ P L + S D +V +W+ ++ H+ S +
Sbjct: 214 LAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVN 273
Query: 228 VRFLPNKDLVLSASGDKSVHIW 249
N+ ++SA D ++ W
Sbjct: 274 SVIWLNETTIVSAGQDSNIKFW 295
Score = 49.6 bits (116), Expect = 2e-07
Identities = 6/40 (15%), Positives = 16/40 (40%)
Query: 212 GKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQA 251
G GH+ ++ ++ + + SA + ++ W
Sbjct: 2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDI 41
Score = 46.1 bits (107), Expect = 3e-06
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 285 VKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
+ GH+ + A +DG+ + +A + N +D+ TG + +
Sbjct: 5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPD 52
Score = 37.3 bits (84), Expect = 0.002
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 169 SCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWS 208
S + I H + + + + SA D ++ W+
Sbjct: 257 SDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
Score = 37.3 bits (84), Expect = 0.002
Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 26/90 (28%)
Query: 232 PNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGH 291
P+ + + S D SV +W ++++ + P+ H
Sbjct: 234 PDNVRLATGSLDNSVIVW-----------------NMNKPSDH---------PIIIKGAH 267
Query: 292 SNVVIAADWLSDGEQVITASWDRVANLFDV 321
+ + + + +++A D ++V
Sbjct: 268 AMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 287
Score = 63.1 bits (151), Expect = 7e-12
Identities = 16/84 (19%), Positives = 32/84 (38%), Gaps = 2/84 (2%)
Query: 170 CYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQT-GKCVLQYSGHSGSVNSV 228
KI + S + ++ + S D + ++S + K + + H VN++
Sbjct: 205 TSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNL 264
Query: 229 RFLPNKDLVLSASGDKSVHIWQAV 252
+ LV S+ D + W V
Sbjct: 265 LWETPSTLV-SSGADACIKRWNVV 287
Score = 61.5 bits (147), Expect = 2e-11
Identities = 16/85 (18%), Positives = 30/85 (35%), Gaps = 9/85 (10%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP 232
+++ SGH G+ + V P L S S D + WS+ + HS + S+
Sbjct: 6 LKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ-----DHSNLIVSLDNSK 56
Query: 233 NKDLVLSASGDKSVHIWQAVINWEC 257
++ + D +
Sbjct: 57 AQEYSSISWDDTLKVNGITKHEFGS 81
Score = 40.3 bits (92), Expect = 2e-04
Identities = 8/39 (20%), Positives = 17/39 (43%), Gaps = 4/39 (10%)
Query: 211 TGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW 249
+ + SGH+ + ++ P ++S S D + W
Sbjct: 2 HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEW 36
Score = 39.6 bits (90), Expect = 3e-04
Identities = 14/115 (12%), Positives = 32/115 (27%), Gaps = 28/115 (24%)
Query: 207 WSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDS 266
+ S + +DLV + S D ++ I+
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIY----------------- 242
Query: 267 DLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDV 321
+ + +K L H + V W + ++++ D ++V
Sbjct: 243 SVKRPMKI----------IKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286
Score = 34.2 bits (76), Expect = 0.021
Identities = 7/41 (17%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 284 PVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETG 324
+K + GH+ + A +I+ S+D + +
Sbjct: 5 VLKTISGHNKGITALTV----NPLISGSYDGRIMEWSSSSM 41
>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 293
Score = 60.6 bits (145), Expect = 5e-11
Identities = 37/179 (20%), Positives = 72/179 (40%), Gaps = 17/179 (9%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRF- 230
+I S GV+ ++ + S D T+++W T +C +GH+GSV +++
Sbjct: 7 RIHCRSETSKGVY--CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYD 64
Query: 231 ------------LPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESS 278
+ D+ + +H +AV++ S D +S
Sbjct: 65 ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124
Query: 279 ITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAI 337
T T + L+GH V D+ D + +++AS DR +++ T +++L I
Sbjct: 125 PTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI 181
Score = 58.7 bits (140), Expect = 2e-10
Identities = 34/147 (23%), Positives = 65/147 (44%), Gaps = 29/147 (19%)
Query: 197 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIW------- 249
SAS DRT+++W+T T + V +GH + +++ LV+S S D ++ +W
Sbjct: 153 SASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGAC 210
Query: 250 ------------QAVINWECLVSNNDNDS----DLDESKEPDESSITLRTPVKELLGHSN 293
+ + +VS + DL + +P + TL ++ L+ HS
Sbjct: 211 LRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTL--CLRTLVEHSG 268
Query: 294 VVIAADWLSDGEQVITASWDRVANLFD 320
V + D Q++++S D ++D
Sbjct: 269 RVFRLQF--DEFQIVSSSHDDTILIWD 293
Score = 49.1 bits (115), Expect = 3e-07
Identities = 14/64 (21%), Positives = 29/64 (45%), Gaps = 11/64 (17%)
Query: 195 LGSASADRTVRLWSTQTG---------KCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKS 245
+ S + D +++W C+ HSG V ++F ++ ++S+S D +
Sbjct: 231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT 288
Query: 246 VHIW 249
+ IW
Sbjct: 289 ILIW 292
Score = 40.2 bits (92), Expect = 2e-04
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLW 207
+R+ H V+ + Q + S+S D T+ +W
Sbjct: 260 LRTLVEHSGRVFRLQFDEFQ--IVSSSHDDTILIW 292
Score = 37.9 bits (86), Expect = 0.001
Identities = 9/59 (15%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 282 RTPVKELLGHSNVVIAADWLS-DGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRA 339
R ++ + S L D +++++ D ++D T + LT ++
Sbjct: 2 RHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLC 60
>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 325
Score = 58.4 bits (139), Expect = 3e-10
Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 195 LGSASADRTVRLWSTQTGKCVLQYSGHSGSV--NSVRFLPNKD-LVLSASGDKSVHIW 249
+ AD T+R+W T KCV +++ + V + + ++S S D +++ +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Score = 47.2 bits (110), Expect = 1e-06
Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 6/87 (6%)
Query: 177 SGHRDGVWDVAVRPGQPVLGSASADRT-VRLW--STQTGKCVLQYSGHSGS-VNSVRFLP 232
S R+ ++ P + VR V+Q++GH S V +V+F P
Sbjct: 14 STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73
Query: 233 NKD--LVLSASGDKSVHIWQAVINWEC 257
K + S V +W + E
Sbjct: 74 IKGSQYLCSGDESGKVIVWGWTFDKES 100
Score = 41.8 bits (96), Expect = 8e-05
Identities = 18/134 (13%), Positives = 34/134 (25%), Gaps = 17/134 (12%)
Query: 137 LASNPSAQKLKTTNKLKVQTSKIVSSFKTSLLSCYKIRSFSGHR-DGVWDVAVRPGQP-- 193
L+ +P+ + S V + F+GH V V P +
Sbjct: 23 LSYDPTTNAIAYPC----GKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ 78
Query: 194 VLGSASADRTVRLWSTQTGKCVLQ--------YSGHSGSVNSVRFLPN--KDLVLSASGD 243
L S V +W K + +G ++ + + + V+ D
Sbjct: 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRD 138
Query: 244 KSVHIWQAVINWEC 257
Sbjct: 139 NFGVFISWDSGNSL 152
Score = 34.1 bits (76), Expect = 0.019
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 300 WLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAI 337
D ++ T D ++DV T +Q T + +
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQL 296
Score = 33.7 bits (75), Expect = 0.028
Identities = 6/38 (15%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 173 IRSFSGHRDGVWDVAVR---PGQPVLGSASADRTVRLW 207
++ ++ + + + V G + S S D T+ +
Sbjct: 286 VQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFY 323
Score = 32.2 bits (71), Expect = 0.094
Identities = 10/93 (10%), Positives = 26/93 (27%), Gaps = 31/93 (33%)
Query: 232 PNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGH 291
+ + D ++ +W D+ SK V++
Sbjct: 261 LDSQKFATVGADATIRVW-----------------DVTTSK-----------CVQKWTLD 292
Query: 292 SNVVIAADW---LSDGEQVITASWDRVANLFDV 321
+ + ++I+ S D N +++
Sbjct: 293 KQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 393
Score = 57.6 bits (137), Expect = 8e-10
Identities = 13/85 (15%), Positives = 26/85 (30%), Gaps = 15/85 (17%)
Query: 178 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC------VLQYSGHSGSVNSVRFL 231
H ++ V+ V S S D +++W + + H ++ V L
Sbjct: 12 AHDADIFSVSACNSFTV--SCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 232 -------PNKDLVLSASGDKSVHIW 249
LV + S + +
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFY 94
Score = 53.7 bits (127), Expect = 1e-08
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 5/110 (4%)
Query: 158 KIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ 217
+ + S S H V ++ L SA D +R W +T + +
Sbjct: 267 ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 326
Query: 218 YSGHSGSV----NSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVSNND 263
+ H + + + + D + G V + N+
Sbjct: 327 LNMHCDDIEIEEDILAVDEHGDSLAEP-GVFDVKFLKKGWRSGMGADLNE 375
Score = 45.6 bits (106), Expect = 5e-06
Identities = 31/257 (12%), Positives = 81/257 (31%), Gaps = 19/257 (7%)
Query: 91 NLNLQDKIDMLMEKLDRESIINEKYPECNDMECVTNMNKNFNKQKVLASNPSAQKLKTTN 150
+ +D+ ++ + + K ++ + ++ + + V + +
Sbjct: 95 RITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFH 154
Query: 151 KLKVQTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWS-- 208
+++ + ++ +L + S V + ++ + + TV++
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS 213
Query: 209 ----TQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDN 264
+ +S S+ SV+F P L+ A S
Sbjct: 214 TLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT------------LY 261
Query: 265 DSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETG 324
+++ E HS+ V++ + GE + +A WD +DV+T
Sbjct: 262 ETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK 321
Query: 325 TILQSLTEPGEAIRAAA 341
+ +L + I
Sbjct: 322 ERITTLNMHCDDIEIEE 338
Score = 44.8 bits (104), Expect = 1e-05
Identities = 21/165 (12%), Positives = 48/165 (29%), Gaps = 33/165 (20%)
Query: 172 KIRSFSGHRDGVWDVAVRPGQP-------VLGSASADRTVRLWSTQTGKC---------- 214
K S H+ G+ V V ++ + S + +
Sbjct: 52 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD 111
Query: 215 VLQYSGHSGSVNSVRFLPNKD-----LVLSASGDKSVHIWQAVINWECLVSNNDNDSDLD 269
+L S ++++ + D +++ + +IW D + L
Sbjct: 112 LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW-------KFHPFADESNSLT 164
Query: 270 ESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDR 314
+ P + L+ V+ + S + D G + T +
Sbjct: 165 LNWSPT---LELQGTVESPMTPSQFATSVDISERG-LIATGFNNG 205
Score = 29.8 bits (65), Expect = 0.56
Identities = 4/43 (9%), Positives = 12/43 (27%), Gaps = 2/43 (4%)
Query: 290 GHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTE 332
H + + ++ S D ++D + +
Sbjct: 12 AHDADIFSVSA--CNSFTVSCSGDGYLKVWDNKLLDNENPKDK 52
>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 360
Score = 56.8 bits (135), Expect = 1e-09
Identities = 17/187 (9%), Positives = 42/187 (22%), Gaps = 24/187 (12%)
Query: 168 LSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC-------VLQYSG 220
+ KI + + + A L S
Sbjct: 166 MEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPL 225
Query: 221 HSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWEC-----------------LVSNND 263
GS N + +P + D + ++ V +
Sbjct: 226 IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHG 285
Query: 264 NDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVET 323
+ + + +++ N + +D + V+ D F +E
Sbjct: 286 EFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK 345
Query: 324 GTILQSL 330
+++
Sbjct: 346 PEDERTV 352
Score = 27.9 bits (60), Expect = 2.2
Identities = 5/42 (11%), Positives = 9/42 (21%), Gaps = 2/42 (4%)
Query: 289 LGHSNVVIAADWLSDGEQVITASWDRVANLF--DVETGTILQ 328
+ + D + L D TG +
Sbjct: 39 VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEK 80
>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 355
Score = 51.3 bits (121), Expect = 6e-08
Identities = 16/170 (9%), Positives = 42/170 (24%), Gaps = 13/170 (7%)
Query: 176 FSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVL--QYSGHSGSVNSVRFLPN 233
+ A L + + +G + + + + P
Sbjct: 190 HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPG 249
Query: 234 KDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGHSN 293
++ LV D S+ + +
Sbjct: 250 GWQQVAYHRALDRIYL--------LVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHE 301
Query: 294 VVIAADWLSDGEQ--VITASWDRVANLFDVETGTILQSLTEPGEAIRAAA 341
+ + + D + ++ D+ + D E+G L+S+ + G +
Sbjct: 302 ID-SINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVIT 350
Score = 38.6 bits (88), Expect = 8e-04
Identities = 6/57 (10%), Positives = 21/57 (36%), Gaps = 2/57 (3%)
Query: 179 HRDGVWDVAVRP-GQPVL-GSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN 233
+ + V +P+L ++ D+T+ + ++G+ + + +
Sbjct: 298 MGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM 354
Score = 35.9 bits (81), Expect = 0.006
Identities = 17/151 (11%), Positives = 37/151 (24%), Gaps = 11/151 (7%)
Query: 196 GSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINW 255
+A + + G+ + G G + + + + AS S ++
Sbjct: 22 AHFAAVTQQFVIDGEAGRVIGMIDG--GFLPNPVVADDGSFIAHASTVFSRIARGERTDY 79
Query: 256 ECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRV 315
+ D + I L + L+G + + S
Sbjct: 80 VEVF-------DPVTLLPTAD--IELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPA 130
Query: 316 ANLFDVETGTILQSLTEPGEAIRAAAGRTGG 346
+ D+E + L P
Sbjct: 131 VGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF 161
Score = 32.1 bits (71), Expect = 0.10
Identities = 15/149 (10%), Positives = 28/149 (18%), Gaps = 13/149 (8%)
Query: 181 DGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSA 240
DG + + V ++ T V P L+
Sbjct: 57 DGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPW-MTSLTP 115
Query: 241 SGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADW 300
G + + V D + L P + +
Sbjct: 116 DGK---TLLFYQFSPAPAVGVVDLEG--------KAFKRMLDVPDCYHIFPTAPDTFFMH 164
Query: 301 LSDGEQ-VITASWDRVANLFDVETGTILQ 328
DG + + + E
Sbjct: 165 CRDGSLAKVAFGTEGTPEITHTEVFHPED 193
>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Pseudomonas putida [TaxId: 303]}
Length = 346
Score = 49.0 bits (115), Expect = 4e-07
Identities = 14/162 (8%), Positives = 43/162 (26%), Gaps = 31/162 (19%)
Query: 183 VWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQ-YSGHSGSVNSVRFLPNKDLVLSAS 241
+ + +A +TGK Q ++ + + P +
Sbjct: 211 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV 270
Query: 242 GDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAADWL 301
+ + + DL + K + + + +
Sbjct: 271 LN-RLAKY-----------------DLKQRK------------LIKAANLDHTYYCVAFD 300
Query: 302 SDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAAGR 343
G+++ +F+ +T ++++ PG + +
Sbjct: 301 KKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTPQ 342
Score = 43.2 bits (100), Expect = 3e-05
Identities = 3/73 (4%), Positives = 17/73 (23%), Gaps = 2/73 (2%)
Query: 186 VAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYS-GHSGSVNSVRFLPN-KDLVLSASGD 243
A++ G + + + + + + P+ + + +
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61
Query: 244 KSVHIWQAVINWE 256
++
Sbjct: 62 GDIYGIDLDTCKN 74
Score = 39.7 bits (91), Expect = 3e-04
Identities = 8/64 (12%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Query: 171 YKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCV--LQYSGHSGSVNSV 228
K+ + + VA L + +++ T + V ++ G S +
Sbjct: 282 RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDMSTTTP 341
Query: 229 RFLP 232
+
Sbjct: 342 QVFI 345
Score = 32.0 bits (71), Expect = 0.11
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 302 SDGEQVITASWDRVANLFDVETGTILQSLTEPG 334
+ E +I ++ ++ DV + T+ +S P
Sbjct: 6 AGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPD 38
>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Paracoccus
denitrificans [TaxId: 266]}
Length = 432
Score = 48.6 bits (115), Expect = 5e-07
Identities = 23/181 (12%), Positives = 43/181 (23%), Gaps = 38/181 (20%)
Query: 184 WDVAV----RPGQPVLG---------SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRF 230
W V V RP Q + + + L T + V+ R
Sbjct: 11 WKVHVAPEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYA-VHISRL 69
Query: 231 LPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLG 290
+ + D V++ DL E + +
Sbjct: 70 SASGRYLFVIGRDGKVNMI-----------------DLW----MKEPTTVAEIKI--GSE 106
Query: 291 HSNVVIAADWLSDGEQVI-TASWDRVANLFDVETGTILQSLTEPGEAIRAAAGRTGGPIR 349
++ + + + I A W + D ET + + G +
Sbjct: 107 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 166
Query: 350 A 350
A
Sbjct: 167 A 167
Score = 37.1 bits (85), Expect = 0.003
Identities = 13/111 (11%), Positives = 20/111 (18%), Gaps = 8/111 (7%)
Query: 173 IRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC-----VLQYSGHSGSVNS 227
V + L D V + + + S S
Sbjct: 55 KTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS 113
Query: 228 VRFLPN-KDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDES 277
K + A I E + DE + E
Sbjct: 114 KMEGWEDKYAIAGAYWPPQYVIMDG-ETLEPKKIQSTRGMTYDEQEYHPEP 163
>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 337
Score = 45.2 bits (105), Expect = 7e-06
Identities = 15/163 (9%), Positives = 36/163 (22%), Gaps = 30/163 (18%)
Query: 179 HRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVL 238
R + + +TG+ ++ +
Sbjct: 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRA 255
Query: 239 SASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIAA 298
+ + DL+++ + + + +
Sbjct: 256 -FGAYNVLESF-----------------DLEKNA------------SIKRVPLPHSYYSV 285
Query: 299 DWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGEAIRAAA 341
+ +DG V +D ET + PG A + A
Sbjct: 286 NVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328
Score = 40.2 bits (92), Expect = 3e-04
Identities = 3/56 (5%), Positives = 16/56 (28%), Gaps = 3/56 (5%)
Query: 197 SASADRTVRLWSTQTGKCV--LQYSGHSGSVNSVRFLPN-KDLVLSASGDKSVHIW 249
+ + + + T+ + + + P + + + +S+
Sbjct: 6 APARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61
Score = 39.8 bits (91), Expect = 3e-04
Identities = 6/59 (10%), Positives = 14/59 (23%), Gaps = 4/59 (6%)
Query: 178 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCV----LQYSGHSGSVNSVRFLP 232
+ V V + A + + +T + L + + F
Sbjct: 277 PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTR 335
Score = 36.7 bits (83), Expect = 0.004
Identities = 7/79 (8%), Positives = 22/79 (27%), Gaps = 6/79 (7%)
Query: 177 SGHRDGVWDVAVRP-GQPVLGSASADRTVRLWSTQTGKCVLQYSGHSG-----SVNSVRF 230
+ V P G+ + + ++ TG+ + + + S+
Sbjct: 30 ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL 89
Query: 231 LPNKDLVLSASGDKSVHIW 249
P+ + + +
Sbjct: 90 SPDGKTLAIYESPVRLELT 108
>gi|206564140|ref|YP_002234903.1|(51-382:385) putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|198040180|emb|CAR56163.1| putative amine
dehydrogenase [Burkholderia cenocepacia J2315]
gi|194561004|ref|YP_002096029.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|124876520|gb|EAY66510.1| hypothetical protein
BCPG_04901 [Burkholderia cenocepacia PC184]
gi|170737581|ref|YP_001778841.1| amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|169819769|gb|ACA94351.1| Amine dehydrogenase
[Burkholderia cenocepacia MC0-3]
gi|78061451|ref|YP_371359.1| amine dehydrogenase
[Burkholderia sp. 383] gi|77969336|gb|ABB10715.1|
Amine dehydrogenase [Burkholderia sp. 383]
gi|107025662|ref|YP_623173.1| amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116693156|ref|YP_838689.1| amine dehydrogenase
[Burkholderia cenocepacia HI2424]
gi|105895036|gb|ABF78200.1| Amine dehydrogenase
[Burkholderia cenocepacia AU 1054]
gi|116651156|gb|ABK11796.1| Amine dehydrogenase
[Burkholderia cenocepacia HI2424] E=8e-14 s/c=0.25
id=29% cov=82%
Length = 321
Score = 44.6 bits (104), Expect = 1e-05
Identities = 16/170 (9%), Positives = 43/170 (25%), Gaps = 11/170 (6%)
Query: 176 FSGHRDGVWDVAVRPGQPVLG---SASADRTVRLWSTQTGK--CVLQYSGHSGSVNSVRF 230
D D A G + VR K +S + + + +
Sbjct: 156 SDAFIDVDKDPAFVNASRYKGDYLFTTYGGNVRSADFSGDKPAFGKPWSLLTDAERAEGW 215
Query: 231 LPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLG 290
P + ++ + + S+ D + + + + ++ +
Sbjct: 216 RPGGMQQTAVQAKQNRYYVLMHKGTDG--SHKDPGTQVWVYDLKSKQRVARWDLAQQKVE 273
Query: 291 HSNVVIAADWLSDGEQVITASWDRVAN-LFDVETGTILQSLTEPGEAIRA 339
+++ D + + + D TG + + G
Sbjct: 274 P---LVSIQVSEDDKPLFYGLTATSDLVVMDARTGALQHVEKQIGNTSSL 320
Score = 38.8 bits (89), Expect = 7e-04
Identities = 13/181 (7%), Positives = 27/181 (14%), Gaps = 30/181 (16%)
Query: 181 DGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSA 240
D V + V + T + + +A
Sbjct: 27 DRKASVVATTYFSRGSHGTRTDVVEIIDNTTLDHAGEIVIPAKHA-----QHVPSPYNTA 81
Query: 241 SGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGHS--NVVIAA 298
++ A ++ S +
Sbjct: 82 FSADGKRLYVA---------------------NITPAASVTVIDAVSKKMLSEIDTAACV 120
Query: 299 DWLSDGEQVITASW--DRVANLFDVETGTILQSLTEPGEAIRAAAGRTGGPIRASPLLLA 356
G+ TA + + G + R L
Sbjct: 121 LAYPAGDDRFTALCESGKALTVTLDANGKEAKRTMSDAFIDVDKDPAFVNASRYKGDYLF 180
Query: 357 I 357
Sbjct: 181 T 181
Score = 37.3 bits (85), Expect = 0.002
Identities = 6/89 (6%), Positives = 17/89 (19%), Gaps = 20/89 (22%)
Query: 173 IRSFSGHRDGVWDVAVR----------PGQPVLGSASADRTVRLWSTQTGKCVLQYSGHS 222
++ + + PG V + + V
Sbjct: 220 MQQTAVQAKQNRYYVLMHKGTDGSHKDPGTQVWVYDLKSKQRVARWDLAQQKV------- 272
Query: 223 GSVNSVRFLP--NKDLVLSASGDKSVHIW 249
+ S++ + V +
Sbjct: 273 EPLVSIQVSEDDKPLFYGLTATSDLV-VM 300
Score = 26.9 bits (58), Expect = 4.1
Identities = 6/46 (13%), Positives = 15/46 (32%), Gaps = 3/46 (6%)
Query: 185 DVAVRP-GQPVL-GSASADRTVRLWSTQTGKCVLQYSGHSGSVNSV 228
+ V +P+ G + V + +TG + + +
Sbjct: 277 SIQVSEDDKPLFYGLTATSDLV-VMDARTGALQHVEKQIGNTSSLL 321
>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of
cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa
[TaxId: 287]}
Length = 426
Score = 44.6 bits (104), Expect = 1e-05
Identities = 20/170 (11%), Positives = 40/170 (23%), Gaps = 25/170 (14%)
Query: 178 GHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLV 237
R + + + L + K V V+ R + +
Sbjct: 18 EDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYL 76
Query: 238 LSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEPDESSITLRTPVKELLGHSNVVIA 297
L D + + D E + E +K + +V +
Sbjct: 77 LVIGRDARIDMI---------------DLWAKEPTKVAE--------IKIGIEARSVESS 113
Query: 298 ADWLSDGEQVITAS-WDRVANLFDVETGTILQSLTEPGEAIRAAAGRTGG 346
+ I + W + D ET Q ++ G +
Sbjct: 114 KFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163
Score = 29.5 bits (65), Expect = 0.73
Identities = 9/98 (9%), Positives = 22/98 (22%), Gaps = 21/98 (21%)
Query: 173 IRSFSGHRDGVWDVAVRPGQ-------PVLGSASADRTVRLWSTQTGKCVLQ-------- 217
+ G G + P A ++V ++ + Q
Sbjct: 296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWA 355
Query: 218 -YSGHSGSVNSVRFLPNKDLVL-----SASGDKSVHIW 249
+ V + D V + ++ +
Sbjct: 356 DLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393
>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain
{Paracoccus denitrificans [TaxId: 266]}
Length = 368
Score = 44.2 bits (103), Expect = 1e-05
Identities = 11/178 (6%), Positives = 44/178 (24%), Gaps = 12/178 (6%)
Query: 155 QTSKIVSSFKTSLLSCYKIRSFSGHRDGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKC 214
+ + + + ++ + ++
Sbjct: 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATM 245
Query: 215 VLQYSGHSGSVNSVRFLPNKDLVLSASGDKSVHIWQAVINWECLVSNNDNDSDLDESKEP 274
G+ + F +++ + + ++ + S L ++
Sbjct: 246 KAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMI---------LTVEHSRSCLAAAENT 296
Query: 275 DESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASW--DRVANLFDVETGTILQSL 330
+ ++ + + + A DG A+ V +++D + S+
Sbjct: 297 SSVTASVGQTSGPI-SNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSV 353
Score = 43.0 bits (100), Expect = 3e-05
Identities = 18/192 (9%), Positives = 37/192 (19%), Gaps = 25/192 (13%)
Query: 181 DGVWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLP-------- 232
G V ++ T + SV
Sbjct: 75 SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS 134
Query: 233 NKDLVLSASGDKSVHIWQA--------VINWECLVSNNDN---------DSDLDESKEPD 275
+ L+ G + + C + + L S
Sbjct: 135 SACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAA 194
Query: 276 ESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVANLFDVETGTILQSLTEPGE 335
+ + + AA G V + + T+ ++
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNES 254
Query: 336 AIRAAAGRTGGP 347
+A R+ G
Sbjct: 255 GRKADNFRSAGF 266
>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon
Methanosarcina mazei [TaxId: 2209]}
Length = 301
Score = 43.7 bits (101), Expect = 1e-05
Identities = 7/62 (11%), Positives = 16/62 (25%), Gaps = 2/62 (3%)
Query: 197 SASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN-KDLVLSASGDKSVHIWQAVINW 255
+ S + + + K S P+ + ++ + V I N
Sbjct: 7 ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65
Query: 256 EC 257
Sbjct: 66 VI 67
Score = 40.6 bits (93), Expect = 2e-04
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 173 IRSFSGHRDGVWDVAVRP-GQPVLGSASADRTVRLWSTQTGKCV 215
D +AV P G+ V + S TV + T T
Sbjct: 237 TARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVIDTATNTIT 279
Score = 36.0 bits (81), Expect = 0.005
Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 203 TVRLWSTQTGKCVLQYSGHSGSVNSVRFLPN-KDLVLSASGDKSVHIW 249
TV + T T K + + P+ K + ++ S +V +
Sbjct: 225 TVSMIDTGTNKITARIPVGPD-PAGIAVTPDGKKVYVALSFCNTVSVI 271
Score = 32.5 bits (72), Expect = 0.067
Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 2/50 (4%)
Query: 282 RTPVKELLGHSNVVIAADWLSDGEQV-ITASWDRVANLFDVETGTILQSL 330
+ + DG++V + S+ ++ D T TI ++
Sbjct: 234 NKITARIPVGPDPA-GIAVTPDGKKVYVALSFCNTVSVIDTATNTITATM 282
Score = 31.4 bits (69), Expect = 0.16
Identities = 7/52 (13%), Positives = 13/52 (25%), Gaps = 2/52 (3%)
Query: 173 IRSFSGHRDGVWDVAVRP-GQPVLGSASADRTVRLWSTQTGKCVLQYSGHSG 223
+ + P G V + + V + T T + S
Sbjct: 25 TATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS 75
>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue
{Nostoc punctiforme [TaxId: 272131]}
Length = 302
Score = 38.1 bits (87), Expect = 0.001
Identities = 11/75 (14%), Positives = 26/75 (34%), Gaps = 2/75 (2%)
Query: 183 VWDVAVRPGQPVLGSASADRTVRLWSTQTGKCVLQYSGHSGSVNSVRFLPNKDLVLSASG 242
+ ++A P + + + + ++ G V+ + F N DLV +
Sbjct: 30 LENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWN 87
Query: 243 DKSVHIWQAVINWEC 257
S+ + V +
Sbjct: 88 ADSIPVVSLVKSDGT 102
>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK,
C-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 71
Score = 26.7 bits (59), Expect = 1.1
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 21/70 (30%)
Query: 272 KEPDESSITLRTPVKELLGHSNVVIAADWLSDGEQVITASWDRVAN-------------- 317
+ P E+ + + E LG +V L G S+ +
Sbjct: 2 RVPGENLVRAVVEIVENLGSERIV----RLRVGGVTFVGSFRSESRVREGVEVDVVFDMK 57
Query: 318 ---LFDVETG 324
+FD TG
Sbjct: 58 KIHIFDKTTG 67
>d1z1za1 d.323.1.1 (A:2-130) Minor tail protein gpU {Bacteriophage
lambda [TaxId: 10710]}
Length = 129
Score = 25.5 bits (56), Expect = 5.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 247 HIWQAVINWECLVSNNDNDSDLDESKE 273
WQA ++ E + DS+LD E
Sbjct: 55 DTWQAELHIEVFLPAQVPDSELDAWME 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.129 0.367
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,228,338
Number of extensions: 53293
Number of successful extensions: 290
Number of sequences better than 10.0: 1
Number of HSP's gapped: 218
Number of HSP's successfully gapped: 119
Length of query: 360
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,226,816
Effective search space: 336147584
Effective search space used: 336147584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)