BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy11017
(142 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q960T2|SAP47_DROME Synapse-associated protein of 47 kDa OS=Drosophila melanogaster
GN=Sap47 PE=1 SV=1
Length = 551
Score = 98.6 bits (244), Expect = 1e-20, Method: Composition-based stats.
Identities = 41/67 (61%), Positives = 49/67 (73%)
Query: 34 EHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTFWRNYFY 93
+ ++NF R PP GVD+EF Y T YP A+ +A+DK LE MRFELVP + E FWRNYFY
Sbjct: 282 QDRRNFVRAPPAGVDFEFSYDTAYPTAIAIMAEDKALETMRFELVPKIITEENFWRNYFY 341
Query: 94 RVSLITQ 100
RVSLI Q
Sbjct: 342 RVSLIIQ 348
>sp|Q96A49|SYAP1_HUMAN Synapse-associated protein 1 OS=Homo sapiens GN=SYAP1 PE=1 SV=1
Length = 352
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 57/94 (60%), Gaps = 7/94 (7%)
Query: 7 PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
PP VD + T Q + ++ + K+NF R+PP GV + FD+ YPVA+V L +
Sbjct: 125 PPWVDTNDEETIQQQILALSAD-------KRNFLRDPPAGVQFNFDFDQMYPVALVMLQE 177
Query: 67 DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQ 100
D+ L MRF LVP + E FWRNYFYRVSLI Q
Sbjct: 178 DELLSKMRFALVPKLVKEEVFWRNYFYRVSLIKQ 211
>sp|Q9D5V6|SYAP1_MOUSE Synapse-associated protein 1 OS=Mus musculus GN=Syap1 PE=1 SV=1
Length = 365
Score = 90.1 bits (222), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 64/106 (60%), Gaps = 8/106 (7%)
Query: 7 PPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQ 66
PP V+ + T Q + ++ + K+NF R+PP GV + FD+ YPVA+V L +
Sbjct: 139 PPWVESHDEETIQQQILALSAD-------KRNFLRDPPAGVQFNFDFDQMYPVALVMLQE 191
Query: 67 DKKLEHMRFELVPATLNETTFWRNYFYRVSLITQYFD-TSLSSIQQ 111
D+ L MRF LVP + E FWRNYFYR+SLI Q T+L++ QQ
Sbjct: 192 DELLSKMRFALVPKLVKEEVFWRNYFYRISLIKQSAQLTALAAQQQ 237
>sp|Q95028|LDH_DROME L-lactate dehydrogenase OS=Drosophila melanogaster GN=ImpL3 PE=2
SV=1
Length = 332
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 15/128 (11%)
Query: 22 VAMVTLEQDK------KLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRF 75
V ++ + DK L+H NF +NP +F + + +VT +K R
Sbjct: 48 VCLIDVCADKLQGELMDLQHGSNFLKNPQITASTDFAASANSRLCIVTAGVRQKEGESRL 107
Query: 76 ELVPATLNETTFWRNYFYRVSLITQYFDTSLSSIQQPVPEL----WPIQFLTPALVVGLS 131
LV T +N + L+ DT L + PV + W + L V+G
Sbjct: 108 SLVQ---RNTDILKNIIPK--LVEYSPDTILLMVSNPVDIMTYVAWKLSGLPKNRVIGSG 162
Query: 132 SNLYQSTY 139
+NL S +
Sbjct: 163 TNLDSSRF 170
>sp|Q5ZIK6|BSDC1_CHICK BSD domain-containing protein 1 OS=Gallus gallus GN=BSDC1 PE=2 SV=1
Length = 451
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 64 LAQDKKLEHMRFELVPATLNETTFWRNYFYRVSLITQ 100
LA + + ++VPA ++ + FW+ YFY+V + Q
Sbjct: 163 LATSPSIRALYTKMVPAAVSHSEFWQRYFYKVHRLEQ 199
>sp|Q5BJ78|BSDC1_XENTR BSD domain-containing protein 1 OS=Xenopus tropicalis GN=bsdc1 PE=2
SV=1
Length = 412
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 33/66 (50%), Gaps = 7/66 (10%)
Query: 42 NPPPGVDYEFD-----YTTQYPVAMVT--LAQDKKLEHMRFELVPATLNETTFWRNYFYR 94
N P G EFD + ++ A ++ L + + ++VPA ++ + FW+ YFY+
Sbjct: 134 NEPDGSPAEFDAWLAYWDPEHRKAEISELLVTSPSIRALYTKMVPAAVSHSEFWQRYFYK 193
Query: 95 VSLITQ 100
V + Q
Sbjct: 194 VHQLEQ 199
>sp|Q9SQ76|HXK2_SOLTU Hexokinase-2 OS=Solanum tuberosum GN=HXK2 PE=2 SV=1
Length = 496
Score = 31.2 bits (69), Expect = 2.3, Method: Composition-based stats.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 12/81 (14%)
Query: 5 NPPPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTL 64
+PPPG E +T +P+ ++ + K F+ + G D VA +T
Sbjct: 163 HPPPGRQRELGFTFSFPIMQTSINSGTLIRWTKGFSIDDTVGKDV---------VAELTK 213
Query: 65 AQDKKLEHMRFELVPATLNET 85
A K+ MR V A +N+T
Sbjct: 214 AMQKREIDMR---VSALVNDT 231
>sp|Q6NTW1|BSC1B_XENLA BSD domain-containing protein 1-B OS=Xenopus laevis GN=bsdc1-b PE=2
SV=1
Length = 417
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 76 ELVPATLNETTFWRNYFYRVSLITQ 100
++VPA ++ + FW+ YFY+V + Q
Sbjct: 182 KMVPAAVSHSEFWQRYFYKVHQLEQ 206
>sp|Q040B2|ARGB_LEUMM Acetylglutamate kinase OS=Leuconostoc mesenteroides subsp.
mesenteroides (strain ATCC 8293 / NCDO 523) GN=argB PE=3
SV=1
Length = 244
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 76 ELVPATLNETTFWRNYFYRVSLITQYFDTS---LSSIQQPVPELWPIQFLT 123
+L PA + FW+ Y+++++ DT +S + +PV ++ I+F T
Sbjct: 15 QLTPAFFDTIKFWQKQHYKIAIVHGGGDTISALMSQLNEPVQKINGIRFTT 65
>sp|Q6INU2|BSC1A_XENLA BSD domain-containing protein 1-A OS=Xenopus laevis GN=bsdc1-a PE=2
SV=1
Length = 413
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 76 ELVPATLNETTFWRNYFYRVSLITQ 100
++VPA ++ + FW+ YFY+V + Q
Sbjct: 175 KMVPAAVSHSEFWQRYFYKVHQLEQ 199
>sp|Q9NW68|BSDC1_HUMAN BSD domain-containing protein 1 OS=Homo sapiens GN=BSDC1 PE=1 SV=1
Length = 430
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 76 ELVPATLNETTFWRNYFYRVSLITQ 100
++VPA ++ + FW YFY+V + Q
Sbjct: 175 KMVPAAVSHSEFWHRYFYKVHQLEQ 199
>sp|Q80Y55|BSDC1_MOUSE BSD domain-containing protein 1 OS=Mus musculus GN=Bsdc1 PE=2 SV=1
Length = 427
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 77 LVPATLNETTFWRNYFYRVSLITQ 100
+VPA ++ + FW YFY+V + Q
Sbjct: 176 MVPAAVSHSEFWHRYFYKVHQLEQ 199
>sp|Q3SX22|BSDC1_BOVIN BSD domain-containing protein 1 OS=Bos taurus GN=BSDC1 PE=2 SV=1
Length = 461
Score = 29.3 bits (64), Expect = 8.4, Method: Composition-based stats.
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 76 ELVPATLNETTFWRNYFYRVSLITQ 100
++VPA ++ + FW YFY+V + Q
Sbjct: 206 KMVPAAVSHSEFWHRYFYKVHQLEQ 230
>sp|P17765|POLG_BYMV Genome polyprotein OS=Bean yellow mosaic virus PE=3 SV=2
Length = 3056
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 21 PVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVT 63
+A V+L ++ + K PPG + EF TTQYPV +VT
Sbjct: 1325 AIAFVSLLKEYSFDGKLIKVSATPPGREVEF--TTQYPVTLVT 1365
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,408,755
Number of Sequences: 539616
Number of extensions: 2214100
Number of successful extensions: 3754
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 3740
Number of HSP's gapped (non-prelim): 26
length of query: 142
length of database: 191,569,459
effective HSP length: 105
effective length of query: 37
effective length of database: 134,909,779
effective search space: 4991661823
effective search space used: 4991661823
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)