Query psy11017
Match_columns 142
No_of_seqs 91 out of 105
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 16:03:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy11017.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/11017hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x3a_A Synapse associated prot 99.9 1.2E-28 4.2E-33 179.5 4.6 95 8-109 4-98 (100)
2 1x3a_A Synapse associated prot 98.4 4.8E-08 1.6E-12 70.8 1.4 68 3-73 29-96 (100)
3 2dii_A TFIIH basal transcripti 96.6 0.00085 2.9E-08 45.3 2.1 37 55-91 14-51 (61)
4 3m8j_A FOCB protein; all-alpha 29.3 19 0.00064 26.4 1.1 16 74-89 22-37 (111)
5 4ann_A ESSB; membrane protein, 15.8 47 0.0016 26.2 1.0 21 72-92 124-144 (215)
6 3fy6_A Integron cassette prote 13.2 47 0.0016 24.6 0.3 35 57-92 86-126 (126)
7 2kwh_A RAla-binding protein 1; 13.1 1.4E+02 0.0049 19.4 2.6 33 57-89 6-41 (56)
8 1hk7_A Heat shock protein HSP8 13.0 44 0.0015 27.8 0.1 37 59-95 106-153 (288)
9 3heq_A Major prion protein; ce 11.8 77 0.0026 24.2 1.1 23 70-94 45-67 (142)
10 3q8t_A Beclin-1; autophagy, AT 11.6 46 0.0016 23.1 -0.2 24 68-91 39-62 (96)
No 1
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=99.95 E-value=1.2e-28 Score=179.50 Aligned_cols=95 Identities=43% Similarity=0.750 Sum_probs=86.8
Q ss_pred CCCCCCccccccchhHHHhhhhhhhhhhhccccccCCCCCcceeecCchhHHHHHHhhcchhhhhhchhcCcccchhhhh
Q psy11017 8 PGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHMRFELVPATLNETTF 87 (142)
Q Consensus 8 ~gVdF~fd~~~~~pvai~~L~~D~~l~DkRnFlr~PP~g~~f~FDfd~~~~~A~aLLkeDpnL~kmR~~LVPk~i~Ee~F 87 (142)
-|++++-+.+...+++ .| ..|++||+++||++.+|.||++.....|.++|++||+|++||++|||++|+|++|
T Consensus 4 ~~~g~~~~~~~ka~i~--~L-----~~D~~tfl~dP~~~~~f~Fd~d~~~~~i~~lL~~dp~L~~l~~~LVP~~v~e~~F 76 (100)
T 1x3a_A 4 GSSGTNDEETIQQQIL--AL-----SADKRNFLRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMRFALVPKLVKEEVF 76 (100)
T ss_dssp CCCCSCTTHHHHHHHH--HH-----HTCSHHHHCCCCSSSCCCCCHHHHHHHHHHHHHHCHHHHHHHHHTTTTTSCHHHH
T ss_pred ccCCCCcHHHHHHHHH--HH-----hcChHhhccCCCCcccccccHHHHHHHHHHHHHhCHHHHHHHHHHCCCCcCHHHH
Confidence 4788888888887755 44 4799999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhHHhhhhhhhcCcccc
Q psy11017 88 WRNYFYRVSLITQYFDTSLSSI 109 (142)
Q Consensus 88 WrnYFyrV~lIkq~~~l~~~~~ 109 (142)
|+||||||++|+|++++.++..
T Consensus 77 W~rYFyrv~~i~q~ee~r~l~~ 98 (100)
T 1x3a_A 77 WRNYFYRVSLIKQSAQLTSGPS 98 (100)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999999987653
No 2
>1x3a_A Synapse associated protein 1; BSD domain, homolog of the drosophila SAP47, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=98.43 E-value=4.8e-08 Score=70.80 Aligned_cols=68 Identities=31% Similarity=0.527 Sum_probs=62.6
Q ss_pred CCCCCCCCCCCccccccchhHHHhhhhhhhhhhhccccccCCCCCcceeecCchhHHHHHHhhcchhhhhh
Q psy11017 3 SRNPPPGVDYEFDYTTQYPVAMVTLEQDKKLEHKKNFTRNPPPGVDYEFDYTTQYPVAMVTLAQDKKLEHM 73 (142)
Q Consensus 3 ~r~pP~gVdF~fd~~~~~pvai~~L~~D~~l~DkRnFlr~PP~g~~f~FDfd~~~~~A~aLLkeDpnL~km 73 (142)
+++||.+.+|+|+.+...+.+..+|.+|+++.++| +-.+|.... +-+||+.|++++..|++..+++.|
T Consensus 29 l~dP~~~~~f~Fd~d~~~~~i~~lL~~dp~L~~l~-~~LVP~~v~--e~~FW~rYFyrv~~i~q~ee~r~l 96 (100)
T 1x3a_A 29 LRDPPAGVQFNFDFDQMYPVALVMLQEDELLSKMR-FALVPKLVK--EEVFWRNYFYRVSLIKQSAQLTSG 96 (100)
T ss_dssp HCCCCSSSCCCCCHHHHHHHHHHHHHHCHHHHHHH-HHTTTTTSC--HHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCCCCcccccccHHHHHHHHHHHHHhCHHHHHHH-HHHCCCCcC--HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 36788899999999999999999999999999999 899998888 788899999999999999998865
No 3
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=96.62 E-value=0.00085 Score=45.29 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=32.3
Q ss_pred chhHHHHHHhhcchhhhhhchhcCcc-cchhhhhhhhh
Q psy11017 55 TQYPVAMVTLAQDKKLEHMRFELVPA-TLNETTFWRNY 91 (142)
Q Consensus 55 ~~~~~A~aLLkeDpnL~kmR~~LVPk-~i~Ee~FWrnY 91 (142)
.--.....+|.+||+|+++.-.||=. .|+|++||.++
T Consensus 14 ~ELe~k~rlL~eN~~L~qLyk~LV~s~vIse~eFW~~r 51 (61)
T 2dii_A 14 KELEEKNRMLQEDPVLFQLYKDLVVSQVISAEEFWANR 51 (61)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHTTTSSCHHHHHHHH
T ss_pred HhHHHHHHHHHhCHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 33456889999999999999999877 99999999875
No 4
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=29.30 E-value=19 Score=26.44 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=13.9
Q ss_pred chhcCcccchhhhhhh
Q psy11017 74 RFELVPATLNETTFWR 89 (142)
Q Consensus 74 R~~LVPk~i~Ee~FWr 89 (142)
.-.|+|+.++|+.||-
T Consensus 22 ~~~LipG~vsee~F~L 37 (111)
T 3m8j_A 22 ESALSSGSMSEEQFFL 37 (111)
T ss_dssp HHCCCTTCSCHHHHHH
T ss_pred cCccCCCCCCHHHHHH
Confidence 3679999999999994
No 5
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=15.77 E-value=47 Score=26.25 Aligned_cols=21 Identities=19% Similarity=0.335 Sum_probs=16.6
Q ss_pred hhchhcCcccchhhhhhhhhh
Q psy11017 72 HMRFELVPATLNETTFWRNYF 92 (142)
Q Consensus 72 kmR~~LVPk~i~Ee~FWrnYF 92 (142)
.++-.+.|-.++|++||+.|=
T Consensus 124 Gik~~l~P~~~~ee~fL~qyK 144 (215)
T 4ann_A 124 GLQNVVDPLPVSEAEFLTRYK 144 (215)
T ss_dssp EETTTBSCCCCCHHHHHHHHH
T ss_pred cCccCCCCCCCCHHHHHHHHH
Confidence 344568888899999999984
No 6
>3fy6_A Integron cassette protein; novel, oyster POND, woodshole,USA, unknown function, structural genomics, PSI-2, protein structure initiative; 2.10A {Vibrio cholerae}
Probab=13.23 E-value=47 Score=24.64 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=19.0
Q ss_pred hHHHHHHhhcchhhhhh--chhcCcccch----hhhhhhhhh
Q psy11017 57 YPVAMVTLAQDKKLEHM--RFELVPATLN----ETTFWRNYF 92 (142)
Q Consensus 57 ~~~A~aLLkeDpnL~km--R~~LVPk~i~----Ee~FWrnYF 92 (142)
..|+-..|.+|.-.+.+ -++-|-+ |+ ...|||.||
T Consensus 86 ~EWR~~~L~~Dei~~E~~~~~~WVN~-iT~sKP~S~FW~K~F 126 (126)
T 3fy6_A 86 LEWRKGALDNDEVTRELELVAQWVNK-VTEAKPNSDFWRKYF 126 (126)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHH-HHHTSCCSHHHHHHC
T ss_pred HHHHhcCCChHHHHHHHHHHHHHHHH-HhhcCCcHHHHHhcC
Confidence 34455556666444332 2444443 22 378999998
No 7
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=13.13 E-value=1.4e+02 Score=19.40 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=28.6
Q ss_pred hHHHHHHhhcchhhhhhchhc---Ccccchhhhhhh
Q psy11017 57 YPVAMVTLAQDKKLEHMRFEL---VPATLNETTFWR 89 (142)
Q Consensus 57 ~~~A~aLLkeDpnL~kmR~~L---VPk~i~Ee~FWr 89 (142)
-.++..+-+|..-|.+++-++ .+..-+||.-|-
T Consensus 6 e~I~~El~kQe~lL~~LH~e~~ag~~~~~~eE~lWe 41 (56)
T 2kwh_A 6 AGIKEEIRRQEFLLNSLHRDLQGGIKDLSKEERLWE 41 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCchhHHHHHH
Confidence 456788899999999999999 788889999995
No 8
>1hk7_A Heat shock protein HSP82; ATPase, chaperone; 2.5A {Saccharomyces cerevisiae} SCOP: d.14.1.8
Probab=12.97 E-value=44 Score=27.83 Aligned_cols=37 Identities=16% Similarity=0.299 Sum_probs=23.3
Q ss_pred HHHHHhhcchhhhhhchhcCcccc-----------hhhhhhhhhhhhH
Q psy11017 59 VAMVTLAQDKKLEHMRFELVPATL-----------NETTFWRNYFYRV 95 (142)
Q Consensus 59 ~A~aLLkeDpnL~kmR~~LVPk~i-----------~Ee~FWrnYFyrV 95 (142)
+...+|.+|+.|++||-.||-|.+ +-+.||.+|=-.+
T Consensus 106 vSRE~LQ~~~~lk~I~k~i~kkvl~~l~~la~d~e~Y~kf~~~fg~~l 153 (288)
T 1hk7_A 106 LSREMLQQNKIMKVIRKNIVKKLIEAFNEIAEDSEQFEKFYSAFSKNI 153 (288)
T ss_dssp -------CCHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred ccHHHhccCHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHhHHH
Confidence 467899999999999999988744 2367999875443
No 9
>3heq_A Major prion protein; cell membrane, disease mutation, disulfide bond, glycoprotein, golgi apparatus, GPI-anchor, lipoprotein, membrane, polymorphism; 1.80A {Homo sapiens} PDB: 2lsb_A 2k1d_A 2lej_A 2lv1_A 2lft_A 1fkc_A 1fo7_A 3haf_A 3hj5_A 1qm0_A 1qm1_A 2kun_A 3hes_A 3her_A 1b10_A 2joh_A 2fj3_A 2jom_A 2l1h_A 2l39_A ...
Probab=11.80 E-value=77 Score=24.16 Aligned_cols=23 Identities=13% Similarity=0.270 Sum_probs=17.1
Q ss_pred hhhhchhcCcccchhhhhhhhhhhh
Q psy11017 70 LEHMRFELVPATLNETTFWRNYFYR 94 (142)
Q Consensus 70 L~kmR~~LVPk~i~Ee~FWrnYFyr 94 (142)
+..++|+.=|. -|+.+||++.+|
T Consensus 45 msrp~~~F~~~--~Ed~Ywren~~R 67 (142)
T 3heq_A 45 MSRPIIHFGSD--YEDRYYRENMHR 67 (142)
T ss_dssp CCCCCCCCSSH--HHHHHHHHHGGG
T ss_pred ccCCccCCCCh--HHHHHHHHHHHh
Confidence 34455555555 799999999998
No 10
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=11.64 E-value=46 Score=23.12 Aligned_cols=24 Identities=25% Similarity=0.400 Sum_probs=15.0
Q ss_pred hhhhhhchhcCcccchhhhhhhhh
Q psy11017 68 KKLEHMRFELVPATLNETTFWRNY 91 (142)
Q Consensus 68 pnL~kmR~~LVPk~i~Ee~FWrnY 91 (142)
.+|...+-++--....|+.|||-|
T Consensus 39 ~el~~le~E~~~L~~eE~~~w~ey 62 (96)
T 3q8t_A 39 ENLEKVQAEAERLDQEEAQYQREY 62 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHH
Confidence 344444444444456889999987
Done!